Query 028011
Match_columns 215
No_of_seqs 152 out of 1274
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:54:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04143 hypothetical protein; 100.0 1.2E-46 2.6E-51 329.8 15.2 178 3-214 34-219 (264)
2 cd02904 Macro_H2A_like Macro d 100.0 6.4E-41 1.4E-45 280.4 14.2 131 77-214 14-146 (186)
3 cd02905 Macro_GDAP2_like Macro 100.0 2.2E-40 4.7E-45 266.0 14.1 123 82-214 2-126 (140)
4 cd02906 Macro_1 Macro domain, 100.0 3.9E-39 8.5E-44 260.4 12.3 128 82-214 1-136 (147)
5 cd02908 Macro_Appr_pase_like M 100.0 3.6E-37 7.8E-42 252.5 13.8 123 82-214 1-124 (165)
6 cd02907 Macro_Af1521_BAL_like 100.0 6.5E-37 1.4E-41 253.0 14.0 129 80-214 1-131 (175)
7 cd02903 Macro_BAL_like Macro d 100.0 1.9E-36 4.2E-41 241.6 14.1 121 82-214 2-124 (137)
8 PRK00431 RNase III inhibitor; 100.0 3.9E-36 8.6E-41 248.6 13.3 129 80-214 2-131 (177)
9 COG2110 Predicted phosphatase 100.0 1.2E-35 2.5E-40 247.1 11.9 130 81-214 3-133 (179)
10 cd03330 Macro_2 Macro domain, 100.0 1.3E-33 2.8E-38 223.3 13.8 122 82-214 1-122 (133)
11 cd02900 Macro_Appr_pase Macro 100.0 4E-30 8.7E-35 215.4 13.2 134 81-214 19-172 (186)
12 smart00506 A1pp Appr-1"-p proc 100.0 1.2E-29 2.6E-34 198.3 14.5 125 82-214 1-127 (133)
13 cd02749 Macro Macro domain, a 100.0 6.4E-29 1.4E-33 197.7 14.8 125 82-213 1-129 (147)
14 KOG2633 Hismacro and SEC14 dom 99.9 1.2E-27 2.6E-32 200.9 10.0 129 71-215 21-152 (200)
15 PF01661 Macro: Macro domain; 99.9 8.2E-28 1.8E-32 183.8 8.1 110 103-214 1-112 (118)
16 PRK13341 recombination factor 99.9 8.2E-26 1.8E-30 221.6 -0.9 131 80-215 474-663 (725)
17 cd02901 Macro_Poa1p_like Macro 99.9 3.5E-22 7.7E-27 158.7 12.5 122 82-214 1-127 (140)
18 PHA02595 tk.4 hypothetical pro 99.7 3.8E-16 8.2E-21 127.2 13.3 127 82-214 2-131 (154)
19 PF14519 Macro_2: Macro-like d 99.1 2.2E-10 4.7E-15 101.1 7.2 130 81-214 42-200 (280)
20 cd03331 Macro_Poa1p_like_SNF2 98.7 1.8E-07 4E-12 76.3 12.2 125 83-212 2-137 (152)
21 PF10154 DUF2362: Uncharacteri 94.9 0.21 4.5E-06 48.2 9.9 128 80-207 252-438 (510)
22 TIGR02452 conserved hypothetic 91.8 0.38 8.2E-06 42.8 5.6 134 80-214 55-224 (266)
23 PHA03033 hypothetical protein; 86.5 2.6 5.5E-05 33.6 6.1 80 82-173 2-82 (142)
24 PHA00684 hypothetical protein 58.7 68 0.0015 25.5 7.4 91 101-214 2-92 (128)
25 PLN02214 cinnamoyl-CoA reducta 57.2 20 0.00043 32.1 4.8 41 159-202 82-125 (342)
26 PF01073 3Beta_HSD: 3-beta hyd 56.1 31 0.00068 30.3 5.9 44 159-202 67-114 (280)
27 KOG1502 Flavonol reductase/cin 51.1 32 0.0007 31.6 5.2 44 159-202 79-127 (327)
28 PF01831 Peptidase_C16: Peptid 49.9 5.7 0.00012 34.0 0.1 33 58-90 216-248 (249)
29 PLN03104 FHL FAR-RED-ELONGATED 45.9 15 0.00033 30.4 2.0 36 13-50 6-41 (201)
30 PRK15181 Vi polysaccharide bio 41.2 57 0.0012 29.1 5.2 51 159-210 91-146 (348)
31 PF13460 NAD_binding_10: NADH( 38.4 52 0.0011 25.9 4.1 35 159-201 61-95 (183)
32 PLN02657 3,8-divinyl protochlo 38.2 71 0.0015 29.4 5.5 44 158-201 136-179 (390)
33 PLN02778 3,5-epimerase/4-reduc 36.6 62 0.0014 28.4 4.7 44 158-201 57-108 (298)
34 CHL00194 ycf39 Ycf39; Provisio 36.4 81 0.0018 27.6 5.4 43 159-201 65-107 (317)
35 PLN02662 cinnamyl-alcohol dehy 34.2 1.2E+02 0.0026 26.1 6.1 44 159-202 77-125 (322)
36 PLN02725 GDP-4-keto-6-deoxyman 32.6 92 0.002 26.5 5.0 43 158-201 49-98 (306)
37 COG4295 Uncharacterized protei 28.1 95 0.0021 27.3 4.2 37 177-213 199-235 (285)
38 KOG4506 Uncharacterized conser 27.8 80 0.0017 30.0 3.9 62 144-205 417-481 (598)
39 PF05185 PRMT5: PRMT5 arginine 27.1 42 0.00091 31.9 2.0 27 80-106 240-266 (448)
40 PTZ00325 malate dehydrogenase; 26.8 1.6E+02 0.0035 26.7 5.7 44 158-201 76-122 (321)
41 PLN02986 cinnamyl-alcohol dehy 26.1 1.7E+02 0.0037 25.4 5.6 44 159-202 78-126 (322)
42 PF09039 HTH_Tnp_Mu_2: Mu DNA 24.7 48 0.001 25.5 1.6 25 179-206 50-74 (108)
43 COG0451 WcaG Nucleoside-diphos 23.2 1.7E+02 0.0036 24.8 5.0 50 160-210 66-121 (314)
44 COG2388 Predicted acetyltransf 20.9 1.3E+02 0.0028 22.8 3.2 41 160-203 40-80 (99)
45 smart00188 IL10 Interleukin-10 20.5 29 0.00063 28.0 -0.4 21 2-23 46-66 (137)
No 1
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=329.76 Aligned_cols=178 Identities=31% Similarity=0.489 Sum_probs=160.2
Q ss_pred hHHHHHHhcCCCCCCCCcCCCCCCccceeechhhHHHHhhhcccccCCCCcceeeccccccccCCCCCCCceeecCCCce
Q 028011 3 TRRLIRFLLPATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESAA 82 (215)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~f~~~~~~~ 82 (215)
+|+|+|-|| |.+.|..++++ ++.+||+||+.+..++++ ++..+..+ + .+.+
T Consensus 34 ~~~~~r~l~-n~r~p~~~~~~-----~l~~~~~~l~~~~~~~~~---------~~~~~~~~-------------~-~~~~ 84 (264)
T PRK04143 34 QQDLLRALA-NVRPALPLSDE-----YLNLQDAYLQDENAERGV---------VDLKDLQP-------------I-KYDN 84 (264)
T ss_pred HHHHHHHHh-ccCCCCCCCHH-----HHHHHHHHHHHHHhhcCc---------ccHHhcCc-------------c-CCCE
Confidence 689999999 99999888877 899999999999999888 66666532 2 3689
Q ss_pred EEEEECccceeccCCCCcEEEEcCCCCCCCC-----CcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCC
Q 028011 83 LVINKGDITKWSVDGSSDAIVNPANERMLGG-----GGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKL 157 (215)
Q Consensus 83 I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~-----gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L 157 (215)
|.||+||||++++ |||||+||+.|.++ +||+++||++||++|+++|+++++.+ ++.+++|++++|++|+|
T Consensus 85 i~i~~GDIt~l~v----DAIVNAANs~L~g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~-g~~~~~G~a~iT~~~nL 159 (264)
T PRK04143 85 IFLWQGDITRLKV----DAIVNAANSRLLGCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQ-GRKEATGQAKITRAYNL 159 (264)
T ss_pred EEEEECCcceeec----CEEEeCcccccccCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHc-CCCCCCceEEEecCCCC
Confidence 9999999999976 99999999999865 89999999999999999999987543 55899999999999999
Q ss_pred CCceEEEEecccccCC---CChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 158 PASHVIHTVGPIYDAD---SNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 158 ~~k~IIHaVgP~~~~~---~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
||+||||+|||.|+.+ ....+.|++||++||++|.+++++|||||+||||+||||++
T Consensus 160 p~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~ 219 (264)
T PRK04143 160 PAKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKE 219 (264)
T ss_pred CCCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHH
Confidence 9999999999999873 24578999999999999999999999999999999999985
No 2
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=6.4e-41 Score=280.40 Aligned_cols=131 Identities=27% Similarity=0.406 Sum_probs=120.7
Q ss_pred cCCCceEEEEECcc--ceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccC
Q 028011 77 LSESAALVINKGDI--TKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPG 154 (215)
Q Consensus 77 ~~~~~~I~I~~GDI--t~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a 154 (215)
+.-+.+|.||+||| |++++ |||||+||++|.+++||++||+++||++|++||+++.+. .+++++|++++|++
T Consensus 14 ~~~~~~i~i~~gDI~~t~~~v----DaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~~~iT~a 87 (186)
T cd02904 14 LFLGQKLSLVQSDISIGSIDV----EGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRKS--NGPLEIAGAAVSQA 87 (186)
T ss_pred hcCCCEEEEEECCccccceec----cEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHHh--cCCCCCCCEEEccC
Confidence 44478999999999 98876 999999999999999999999999999999999987643 24899999999999
Q ss_pred CCCCCceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 155 FKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 155 ~~L~~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
|+||||||||+|||.|... ..++.|++||++||++|++++++|||||+||||+||||++
T Consensus 88 ~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~ 146 (186)
T cd02904 88 HGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQ 146 (186)
T ss_pred CCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHH
Confidence 9999999999999999664 4578999999999999999999999999999999999986
No 3
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=2.2e-40 Score=266.01 Aligned_cols=123 Identities=39% Similarity=0.588 Sum_probs=116.2
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCCce
Q 028011 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASH 161 (215)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~k~ 161 (215)
+|.||+||||++++ |||||++|++|.+++||+++|++++|++|++||++.. .+++|++++|++|+|||||
T Consensus 2 ki~l~~GdIt~~~v----DaIVNaan~~l~~~ggv~~aI~~aaG~~l~~e~~~~~------~~~~G~~~~T~~~~L~~k~ 71 (140)
T cd02905 2 RIVLWEGDICNLNV----DAIVNSTNETLTDKNPISDKIFARAGSELREEIQTLG------GCRTGEAKLTKGYNLPARF 71 (140)
T ss_pred eEEEEeCccCcccC----CEEEeCCccccCCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCcEEEecCCCCCccE
Confidence 68999999999976 9999999999999999999999999999999998764 6999999999999999999
Q ss_pred EEEEecccccCCCC--hHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 162 VIHTVGPIYDADSN--PEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 162 IIHaVgP~~~~~~~--~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
|||+|||+|+.++. .++.|++||++||+.|++++++|||||+||||++|||++
T Consensus 72 VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~ 126 (140)
T cd02905 72 IIHTVGPKYNVKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPPE 126 (140)
T ss_pred EEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHH
Confidence 99999999998753 468999999999999999999999999999999999986
No 4
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=100.00 E-value=3.9e-39 Score=260.44 Aligned_cols=128 Identities=42% Similarity=0.670 Sum_probs=117.3
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCCCCC-----CCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCC
Q 028011 82 ALVINKGDITKWSVDGSSDAIVNPANERMLG-----GGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFK 156 (215)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~-----~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~ 156 (215)
+|+||+|||+++++ |||||++|+.|.+ ++||+++|++++|++|++||+++++. .++.+++|++++|++|+
T Consensus 1 ~i~v~~GdIt~~~~----DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~-~g~~~~~G~a~~T~~~~ 75 (147)
T cd02906 1 SIYLWKGDITTLKV----DAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTK-QGREEPTGQAKITPGYN 75 (147)
T ss_pred CeEEEECCcCCccC----CEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHh-cCCCCCCCeEEEEeCCC
Confidence 47899999999976 9999999999974 48999999999999999999998743 45589999999999999
Q ss_pred CCCceEEEEecccccCCC---ChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 157 LPASHVIHTVGPIYDADS---NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 157 L~~k~IIHaVgP~~~~~~---~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
|||+||||+|+|+|.... +..+.|++||++||+.|.+++++|||||+||||+||||++
T Consensus 76 L~~k~VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~ 136 (147)
T cd02906 76 LPAKYVIHTVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQE 136 (147)
T ss_pred CCCCEEEEECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHH
Confidence 999999999999998764 3578999999999999999999999999999999999986
No 5
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=100.00 E-value=3.6e-37 Score=252.51 Aligned_cols=123 Identities=58% Similarity=0.939 Sum_probs=116.2
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCCce
Q 028011 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASH 161 (215)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~k~ 161 (215)
+|+||+|||+++++ |||||++|+++.+++||+++|++++|++|++||+++. ++++|++++|++|+|+|+|
T Consensus 1 ~i~i~~GdI~~~~~----daIVn~an~~l~~~ggv~~ai~~~~G~~l~~e~~~~~------~~~~G~~v~T~~~~l~~~~ 70 (165)
T cd02908 1 KIEIIQGDITKLEV----DAIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELR------GCPTGEAVITSGYNLPAKY 70 (165)
T ss_pred CeEEEecccceeec----CEEEECCCCcccCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCCEEEeeCCCCCCCE
Confidence 58899999999976 9999999999999999999999999999999999875 6799999999999999999
Q ss_pred EEEEecccccCCC-ChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 162 VIHTVGPIYDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 162 IIHaVgP~~~~~~-~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
|||+|+|.|..+. ++.+.|++||++||+.|++++++|||||+||||++|||++
T Consensus 71 IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~ 124 (165)
T cd02908 71 VIHTVGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLD 124 (165)
T ss_pred EEEEcCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHH
Confidence 9999999998753 5678999999999999999999999999999999999985
No 6
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=100.00 E-value=6.5e-37 Score=253.01 Aligned_cols=129 Identities=40% Similarity=0.583 Sum_probs=120.2
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCC
Q 028011 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (215)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~ 159 (215)
|.+|+||+|||+++++ |||||++|+++.+++||+++|++++|++++++|+++++. .+++++|++++|++|+|+|
T Consensus 1 ~~~i~i~~GdI~~~~~----DaIVn~an~~~~~~ggv~~ai~~~~G~~l~~e~~~~~~~--~g~~~~G~~~~T~~~~L~~ 74 (175)
T cd02907 1 GVTLSVIKGDITRFPV----DAIVNAANEDLKHGGGLALAIVKAGGPEIQEESDEYVRK--NGPVPTGEVVVTSAGKLPC 74 (175)
T ss_pred CcEEEEEECCcceeec----CEEEECCCCCcCCCCCHHHHHHHHHhHHHHHHHHHHHHh--cCCCCCCcEEEecCCCCCC
Confidence 4689999999999976 999999999999999999999999999999999987643 3589999999999999999
Q ss_pred ceEEEEecccccCCC--ChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 160 SHVIHTVGPIYDADS--NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 160 k~IIHaVgP~~~~~~--~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
|||||+|+|.|+... +..+.|++||++||+.|.+++++|||||+||||++|||++
T Consensus 75 k~IiH~v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~ 131 (175)
T cd02907 75 KYVIHAVGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLE 131 (175)
T ss_pred CEEEEeCCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHH
Confidence 999999999998864 4578999999999999999999999999999999999985
No 7
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=100.00 E-value=1.9e-36 Score=241.58 Aligned_cols=121 Identities=33% Similarity=0.431 Sum_probs=112.9
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCC-CCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccC-CCcEEEccCCCCCC
Q 028011 82 ALVINKGDITKWSVDGSSDAIVNPANER-MLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCP-IGEARITPGFKLPA 159 (215)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaNs~-l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~-~G~~~iT~a~~L~~ 159 (215)
+|+|++|||+++++ |||||++|+. +.+++||+++|++++|++++++|+++.+ ++ +|++++|++|+|||
T Consensus 2 ~i~i~~GdI~~~~~----DaIVN~an~~~~~~~ggv~~aI~~~~G~~l~~~~~~~~~------~~~~G~~~vT~~~~L~~ 71 (137)
T cd02903 2 TLQVAKGDIEDETT----DVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAKL------GQTVGSVIVTKGGNLPC 71 (137)
T ss_pred EEEEEeCccCCccC----CEEEECCCCccCCCCCCHHHHHHHhccHHHHHHHHHHcC------CCCCCeEEEecCCCCCC
Confidence 68999999999976 9999999999 7899999999999999999999998763 33 69999999999999
Q ss_pred ceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 160 SHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 160 k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
|||||+++|.|..+ ..+.|++||++||+.|++++++|||||+||||++|||++
T Consensus 72 k~IiH~~~p~~~~~--~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~ 124 (137)
T cd02903 72 KYVYHVVLPNWSNG--ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKD 124 (137)
T ss_pred CEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHH
Confidence 99999999999765 678999999999999999999999999999999999985
No 8
>PRK00431 RNase III inhibitor; Provisional
Probab=100.00 E-value=3.9e-36 Score=248.58 Aligned_cols=129 Identities=52% Similarity=0.826 Sum_probs=120.2
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCC
Q 028011 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (215)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~ 159 (215)
+.+|+|++|||+++++ |||||++|+++.+++||+++|++++|++++++|+++++.+ +++++|++++|++++|+|
T Consensus 2 ~~~i~i~~Gdi~~~~~----daIVn~aN~~~~~~ggva~aI~~~~G~~l~~e~~~~~~~~--~~l~~G~~~~T~~~~l~~ 75 (177)
T PRK00431 2 GMRIEVVQGDITELEV----DAIVNAANSSLLGGGGVDGAIHRAAGPEILEECRELRQQQ--GPCPTGEAVITSAGRLPA 75 (177)
T ss_pred CcEEEEEeCCcccccC----CEEEECCCccccCCCcHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCeEEEecCCCCCC
Confidence 5689999999999865 9999999999999999999999999999999999887543 599999999999999999
Q ss_pred ceEEEEecccccCCC-ChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 160 SHVIHTVGPIYDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 160 k~IIHaVgP~~~~~~-~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
+||||+|+|.|+... ...+.|++||++||+.|++++++|||||+||||++|||++
T Consensus 76 ~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~ 131 (177)
T PRK00431 76 KYVIHTVGPVWRGGEDNEAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLE 131 (177)
T ss_pred CEEEEecCCeecCCCCcHHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHH
Confidence 999999999998764 3578999999999999999999999999999999999975
No 9
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=247.06 Aligned_cols=130 Identities=49% Similarity=0.794 Sum_probs=121.6
Q ss_pred ceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCCc
Q 028011 81 AALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPAS 160 (215)
Q Consensus 81 ~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~k 160 (215)
..|.+++||||++++ |||||+||+++.++|||++||++++|++|+++|+.....+++..+++|++++|++|+|+++
T Consensus 3 ~~i~~v~GDIt~~~~----daIVnaAN~~l~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a~ 78 (179)
T COG2110 3 TNIRVVQGDITKLEA----DAIVNAANSQLLGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPAK 78 (179)
T ss_pred ceEEEEecccceeeh----hheeecccccCCCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCCC
Confidence 479999999999976 9999999999999999999999999999999999988666666789999999999999999
Q ss_pred eEEEEecccccCCC-ChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 161 HVIHTVGPIYDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 161 ~IIHaVgP~~~~~~-~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
||||++||.|.... ...+.|..||+++|++|.+++++|||||+||||++|||++
T Consensus 79 ~ViH~vgp~~~~g~~~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~ 133 (179)
T COG2110 79 YVIHTVGPSWRGGSKDEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLE 133 (179)
T ss_pred EEEecCCCcccCCChhHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHH
Confidence 99999999998865 3468999999999999999999999999999999999975
No 10
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=100.00 E-value=1.3e-33 Score=223.32 Aligned_cols=122 Identities=40% Similarity=0.527 Sum_probs=113.1
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCCce
Q 028011 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASH 161 (215)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~k~ 161 (215)
.|++++|||+++++ |||||++|+++.+++||+++|++++|++++++|++.. .+++|++++|++++|+|||
T Consensus 1 ~i~i~~GdI~~~~~----DaIVn~~N~~~~~g~Gva~ai~~~~G~~~~~~~~~~~------~~~~G~~~~t~~~~l~~k~ 70 (133)
T cd03330 1 ELEVVQGDITKVDA----DAIVNAANSRLRMGGGVAGAIKRAGGSVIEREAVRKA------PIPVGEAVITGAGDLPARY 70 (133)
T ss_pred CEEEEEcccccccC----CEEEeCCCCCCCCCCcHHHHHHHHhCHHHHHHHHHcC------CCCCCeEEEEeCCCCCCCE
Confidence 37899999999976 9999999999999999999999999999999998742 7899999999999999999
Q ss_pred EEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 162 VIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 162 IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
|||+++|.+.. ..+.+.|++||+++|+.|++++++|||||+||||++|||++
T Consensus 71 Iih~~~~~~~~-~~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~ 122 (133)
T cd03330 71 VIHAATMEEPG-RSSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKE 122 (133)
T ss_pred EEEeCCCCCCC-CCHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHH
Confidence 99999997655 45678999999999999999999999999999999999975
No 11
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.97 E-value=4e-30 Score=215.37 Aligned_cols=134 Identities=21% Similarity=0.163 Sum_probs=112.4
Q ss_pred ceEEEEECccceecc------CCCCcEEEEcCCCCCCCCCcHHHHHHHHhC-hHHHHHHhhCCccCCCcccCCCcEEEcc
Q 028011 81 AALVINKGDITKWSV------DGSSDAIVNPANERMLGGGGADGAIHRAAG-PELREACCKVPEVRPEVRCPIGEARITP 153 (215)
Q Consensus 81 ~~I~I~~GDIt~~~v------d~~~DaIVNaaNs~l~~~gGV~~aI~~~aG-~~L~~e~~~~~~~~~~~~l~~G~~~iT~ 153 (215)
..+.+++|+++++.. .+++||||||||+.+.|+|||++||++++| ++|+++|++.+..+..+.+++|++++|+
T Consensus 19 ~~v~~~~~~~~~i~~~~~~~~~~~~DaIVnpANs~~~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it~ 98 (186)
T cd02900 19 KYVCIVNGGLETIEDSVRKLHHGHFDSIVSPANSYGYLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVVP 98 (186)
T ss_pred CCeEEEeCCceecchhhcccccCccCEEEeCCCcccCCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEec
Confidence 456777777776652 124699999999999999999999999999 7999999775533334699999999999
Q ss_pred CCCCC----------CceEEEEeccccc-CCCChHHHHHHHHHHHHHHHHHC--CCcEEEECcccccCCCccCC
Q 028011 154 GFKLP----------ASHVIHTVGPIYD-ADSNPEASLRNAYKNSLSVAKEN--NIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 154 a~~L~----------~k~IIHaVgP~~~-~~~~~~~~L~~~y~~~L~~a~~~--~ikSIAfP~IgTG~~g~P~~ 214 (215)
+++|+ ++||||++++.+. ......+.|+.||+++|++|+++ +++|||||+||||++|||++
T Consensus 99 ~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~ 172 (186)
T cd02900 99 LGRALLEKTIYCRWGIPYLIHAPTMRVPSPVITGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPE 172 (186)
T ss_pred CCCCccccccccccCCCEEEEcCcccCCCCCCCcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHH
Confidence 99999 9999999876554 22245679999999999999987 89999999999999999985
No 12
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.97 E-value=1.2e-29 Score=198.28 Aligned_cols=125 Identities=46% Similarity=0.605 Sum_probs=113.4
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHH-HHHHhhCCccCCCcccCCCcEEEccCCCCCCc
Q 028011 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPEL-REACCKVPEVRPEVRCPIGEARITPGFKLPAS 160 (215)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L-~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~k 160 (215)
.|++++|||+++++ |+|||++|+++.+++|++++|++++|+++ ++++++.. ++++++|++++|++++++++
T Consensus 1 ~i~~~~Gdi~~~~~----d~IV~~~n~~~~~~~g~a~~i~~~~g~~~~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~ 72 (133)
T smart00506 1 ILKVVKGDITKPRA----DAIVNAANSDGAHGGGVAGAIARAAGKALEKEAFRKLA----GGECPVGTAVVTEGGNLPAK 72 (133)
T ss_pred CeEEEeCCCCcccC----CEEEECCCcccCCCCcHHHHHHHHhChHHHHHHHHHhc----CCCcCCccEEEecCCCCCCC
Confidence 37899999999865 99999999999999999999999999996 66665543 23899999999999999999
Q ss_pred eEEEEecccccCC-CChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 161 HVIHTVGPIYDAD-SNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 161 ~IIHaVgP~~~~~-~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
||||+++|.|... ....+.|++||++||+.|.+++++|||||+||||++|+|.+
T Consensus 73 ~Iih~~~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~ 127 (133)
T smart00506 73 YVIHAVGPRASGHSNEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKD 127 (133)
T ss_pred EEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHH
Confidence 9999999999876 36679999999999999999999999999999999999975
No 13
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.96 E-value=6.4e-29 Score=197.72 Aligned_cols=125 Identities=41% Similarity=0.574 Sum_probs=114.3
Q ss_pred eEEEEECccce-eccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCC-C
Q 028011 82 ALVINKGDITK-WSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLP-A 159 (215)
Q Consensus 82 ~I~I~~GDIt~-~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~-~ 159 (215)
.|++++|||++ .++ |+|||++|+.+.+++|++.+|++++|++++++|++..+.+ .+++|++.+|++++++ +
T Consensus 1 ~i~~~~GDi~~~~~~----d~IVn~~n~~~~~g~gi~~ai~~~~g~~~~~~~~~~~~~~---~~~~G~~~~t~~~~~~~~ 73 (147)
T cd02749 1 KIKVVSGDITKPLGS----DAIVNAANSSGRDGGGVNLAISKKAGKELEEESKKLRKEL---ELQVGEAVLTKGYNLDGA 73 (147)
T ss_pred CEEEEECCCCCCCCC----CEEEeCCCCCCCCCChHHHHHHHHhCHHHHHHHHHHhccc---CCCCCCEEECcCCCCCcC
Confidence 37899999999 654 9999999999999999999999999999999999887432 4899999999999999 9
Q ss_pred ceEEEEecccccCCC--ChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccC
Q 028011 160 SHVIHTVGPIYDADS--NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLF 213 (215)
Q Consensus 160 k~IIHaVgP~~~~~~--~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~ 213 (215)
+||||+++|.|.... .+.+.|++||++||..|.+++++|||||.||||++|||+
T Consensus 74 ~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~~~ 129 (147)
T cd02749 74 KYLIHIVGPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGFPK 129 (147)
T ss_pred CEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCCCc
Confidence 999999999998864 356899999999999999999999999999999999954
No 14
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.2e-27 Score=200.95 Aligned_cols=129 Identities=42% Similarity=0.674 Sum_probs=116.5
Q ss_pred CCceeecCC--CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCc
Q 028011 71 EDGHFKLSE--SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGE 148 (215)
Q Consensus 71 ~~~~f~~~~--~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~ 148 (215)
....|++.+ +.+|++|+||++.+++ |||| +.+++|++.+||+++|+++.+||..+. .|++|.
T Consensus 21 ~l~~f~~~~~~~~~i~lwr~d~~~l~v----~avv------l~~g~~~~~ai~~aagp~l~~e~~~~~------~c~tG~ 84 (200)
T KOG2633|consen 21 SLEVFKIDKPDNGGISLWRGDGKTLEV----DAVV------LLGGKGVDEAIHRAAGPELPLECAYLH------GCRTGA 84 (200)
T ss_pred ccchhhccCccccCeeEeecccccccc----eeee------eccCcchhHHHHHhcCCcchHHHHhhc------CCCCCe
Confidence 345677755 7899999999999987 9998 889999999999999999999998874 699999
Q ss_pred EEEccCCCCCCceEEEEecccccCCCChH-HHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCCC
Q 028011 149 ARITPGFKLPASHVIHTVGPIYDADSNPE-ASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFLT 215 (215)
Q Consensus 149 ~~iT~a~~L~~k~IIHaVgP~~~~~~~~~-~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~t 215 (215)
+++|++++||+|+|||+|||.|......+ ..|..||++||.+|.++.++|||||+|++|++|||.++
T Consensus 85 ak~t~~~~Lpak~vIHtvgP~~~~d~~~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~ 152 (200)
T KOG2633|consen 85 AKSTGGYGLPAKRVIHTVGPRWKEDKLQECYFLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWED 152 (200)
T ss_pred eEecCCCCCceeEEEEecCchhhccchHHHHHHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHH
Confidence 99999999999999999999998876332 25999999999999999999999999999999999874
No 15
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.95 E-value=8.2e-28 Score=183.79 Aligned_cols=110 Identities=43% Similarity=0.697 Sum_probs=101.3
Q ss_pred EEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCCceEEEEecccccCC--CChHHHH
Q 028011 103 VNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDAD--SNPEASL 180 (215)
Q Consensus 103 VNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~k~IIHaVgP~~~~~--~~~~~~L 180 (215)
||++|+++.+++||+++|++++|++++++|+++.+. ++++++|++++|++++|+++||||+|+|.|... .+..+.|
T Consensus 1 Vn~~N~~~~~g~Gva~ai~~~~g~~~~~~~~~~~~~--~~~~~~G~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L 78 (118)
T PF01661_consen 1 VNAANCFLSMGGGVAKAIFKAAGPALQEECKEIKKK--GGELPVGEVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEAL 78 (118)
T ss_dssp EEEEETTSSBSSHHHHHHHHHHTHHHHHHHHHHHHH--HHSSSTTSEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHH
T ss_pred CcCCCCCCCCCchHHHHHHHhchHHHHHHHHHhhcc--cCcccCCCeeeecCCCccccceEEEecceeccccccccHHHH
Confidence 899999999999999999999999999999887532 236999999999999999999999999999743 3578999
Q ss_pred HHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 181 ~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
++||++||+.|++++++||+||+||||++|||++
T Consensus 79 ~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~ 112 (118)
T PF01661_consen 79 ESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWD 112 (118)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHH
T ss_pred HHHHHHHHHHHHHcCCcccccCcccCCCCCCCHH
Confidence 9999999999999999999999999999999975
No 16
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.90 E-value=8.2e-26 Score=221.61 Aligned_cols=131 Identities=26% Similarity=0.253 Sum_probs=117.5
Q ss_pred CceEEEEE----CccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHH---HHHHhhCCcc--------------
Q 028011 80 SAALVINK----GDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPEL---REACCKVPEV-------------- 138 (215)
Q Consensus 80 ~~~I~I~~----GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L---~~e~~~~~~~-------------- 138 (215)
+.++.+++ ||||.+++ |+|||+||+.+.+++|++++|++++|+++ +++|+++..+
T Consensus 474 ~~~~~~~~~~~~~dit~~~~----d~ivnaan~~ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~~~~ 549 (725)
T PRK13341 474 GERLAILRDRLWSDITWQRH----DRVLNLANRSLLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPVLLD 549 (725)
T ss_pred ccHHHHHHHHHhcccccccc----ceeEEccCccchhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCccccc
Confidence 67899999 99999876 99999999999999999999999999999 8888764221
Q ss_pred ------CC----------CcccCCCcEEEc------------cCCCCCCceEEEEecccccCCCChHHHHHHHHHHHHHH
Q 028011 139 ------RP----------EVRCPIGEARIT------------PGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSV 190 (215)
Q Consensus 139 ------~~----------~~~l~~G~~~iT------------~a~~L~~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~ 190 (215)
+. .+.|++|++++| ++|+|+|+||||+|||.|..... .+.|+.||+++|..
T Consensus 550 ~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~-~~~l~~~~~~~L~~ 628 (725)
T PRK13341 550 GSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLTPAGKLKLLYSIPAVGPAWALLSE-DELLYKALYSALLE 628 (725)
T ss_pred cchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcCCCCeeEEEEeccccChHhhhcCc-cchhHHHHHHHHHH
Confidence 00 258999999999 99999999999999999987644 56899999999999
Q ss_pred HHHCCCc----------EEEECcccccCCCccCCC
Q 028011 191 AKENNIQ----------YIAFTAISCGVYGYLFLT 215 (215)
Q Consensus 191 a~~~~ik----------SIAfP~IgTG~~g~P~~t 215 (215)
|++++++ |||||+||||+||||.++
T Consensus 629 Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~ 663 (725)
T PRK13341 629 AEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEEL 663 (725)
T ss_pred HHHHhcccccchhHHHHHHHhcCCccceecCCccc
Confidence 9999999 999999999999999874
No 17
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.88 E-value=3.5e-22 Score=158.71 Aligned_cols=122 Identities=19% Similarity=0.257 Sum_probs=101.9
Q ss_pred eEEEEECcccee-ccCCCCcEEEEcCCCCCCCCCcHHHHHHHHh---ChHHHHHHhhCCccCCCcccCCCcEEE-ccCCC
Q 028011 82 ALVINKGDITKW-SVDGSSDAIVNPANERMLGGGGADGAIHRAA---GPELREACCKVPEVRPEVRCPIGEARI-TPGFK 156 (215)
Q Consensus 82 ~I~I~~GDIt~~-~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~a---G~~L~~e~~~~~~~~~~~~l~~G~~~i-T~a~~ 156 (215)
.|++++|||++. ++ |+|||++|+.+.|++||+.+|.++. ..++++.|++. .+..|++.+ +.+++
T Consensus 1 ~i~~v~GDi~~~~~~----d~Iv~~~N~~~~mG~Gia~~i~~~~p~~~~~~~~~~~~~-------~~~~G~~~~~~~~~~ 69 (140)
T cd02901 1 MITYVKGDLLHAPEA----AALAHAVNCDGVMGKGIALQFKEKFPEFVEEYRAACKKK-------ELLLGGVAVLERGSS 69 (140)
T ss_pred CeEEEcCccccCCCC----CEEEEEEcCCCccChHHHHHHHHHCcHHHHHHHHHHHhc-------CCCCCcEEEEecCCC
Confidence 478999999998 55 9999999999999999999999973 23445555442 344566555 56777
Q ss_pred CCCceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 157 LPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 157 L~~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
++++||+|+++|.|.......+.|++|++++++.|++++++|||||.||||++|+|.+
T Consensus 70 ~~~~~I~~~~t~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~ 127 (140)
T cd02901 70 LVSRYIYNLPTKVHYGPKSRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWE 127 (140)
T ss_pred CCceEEEEeeccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHH
Confidence 8899999999998776555678999999999999999999999999999999999964
No 18
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.69 E-value=3.8e-16 Score=127.25 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=103.0
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEE-ccCCCCCCc
Q 028011 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARI-TPGFKLPAS 160 (215)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~i-T~a~~L~~k 160 (215)
.|++++|||++... ...++|||++|..+.||+||+.+|.++++ ++.++.++.. .++..+.|++.+ +.+++.+.+
T Consensus 2 ~i~~v~GDl~~~~~-~~~~~i~h~~N~~g~mG~GIA~~~k~~~P-~~~~~y~~~~---~~~~~~lG~~~~~~~~~~~~~~ 76 (154)
T PHA02595 2 IVDYIKGDIVALFL-QGKGNIAHGCNCFHTMGSGIAGQLAKAFP-QILEADKLTT---EGDVEKLGTFSVWEKYVGGHKA 76 (154)
T ss_pred eEEEECCccccccc-CCCceEEEeeCCCCcCChHHHHHHHHHcC-hHHHHHHHHh---cCCccccceEEEEEeeccCCCE
Confidence 37889999987742 13479999999999999999999999985 7777766553 234678999976 556677789
Q ss_pred eEEEEecccccCCCC-hHHHHHHHHHHHHHHHHHCCC-cEEEECcccccCCCccCC
Q 028011 161 HVIHTVGPIYDADSN-PEASLRNAYKNSLSVAKENNI-QYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 161 ~IIHaVgP~~~~~~~-~~~~L~~~y~~~L~~a~~~~i-kSIAfP~IgTG~~g~P~~ 214 (215)
||+|.++- |+.+.. ..+.|++|+++..+.++++++ .|||||.||||++|+|-+
T Consensus 77 ~I~nl~tq-~~~~~~~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~GlgGl~W~ 131 (154)
T PHA02595 77 YCFNLYTQ-FDPGPNLEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIAGGDWD 131 (154)
T ss_pred EEEEEecc-CCCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCCCCCHH
Confidence 99999876 766543 456799999999999999998 999999999999999853
No 19
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=99.09 E-value=2.2e-10 Score=101.13 Aligned_cols=130 Identities=24% Similarity=0.222 Sum_probs=74.9
Q ss_pred ceEEEEECccceecc---------CCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHH-HhhCCccCCCcccCCCcEE
Q 028011 81 AALVINKGDITKWSV---------DGSSDAIVNPANERMLGGGGADGAIHRAAGPELREA-CCKVPEVRPEVRCPIGEAR 150 (215)
Q Consensus 81 ~~I~I~~GDIt~~~v---------d~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e-~~~~~~~~~~~~l~~G~~~ 150 (215)
..+.+..|++..+.- +.+.||||.||||...++||.+.+|.++.|.+-.+. +++.. .+...++|++-
T Consensus 42 ~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGyMgGGFDLai~~~fggk~~E~~~r~~l---~~~y~pvGs~t 118 (280)
T PF14519_consen 42 NYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGYMGGGFDLAISEYFGGKPFENWFRAQL---GERYHPVGSCT 118 (280)
T ss_dssp --EEEEES-HHHHHHHTTSS--------EEEEEEEETT----SHHHHHHHHHHTSHHHHHHHHHHT---TTS---TT--E
T ss_pred ceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhcccCCCchhHHHHHHhCCchhHHHHHHHH---hccccCCCeeE
Confidence 448888888875531 125799999999999999999999999887654443 45433 23356899988
Q ss_pred EccC----------CCCCCceEEEEeccc------ccCCC---ChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCc
Q 028011 151 ITPG----------FKLPASHVIHTVGPI------YDADS---NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGY 211 (215)
Q Consensus 151 iT~a----------~~L~~k~IIHaVgP~------~~~~~---~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~ 211 (215)
+.+- .+..++||+|+.+.. |.... ...+.+-++++|.+..+. ..+.+|.+|.||||.+|+
T Consensus 119 vIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV 197 (280)
T PF14519_consen 119 VIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREVPYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGV 197 (280)
T ss_dssp EEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT--
T ss_pred EEECchhhhhhhcccccCceEEEECCccccCCCcccchhHHHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCC
Confidence 8664 234678999996532 22211 123556678888887654 469999999999999999
Q ss_pred cCC
Q 028011 212 LFL 214 (215)
Q Consensus 212 P~~ 214 (215)
|++
T Consensus 198 ~p~ 200 (280)
T PF14519_consen 198 PPE 200 (280)
T ss_dssp -HH
T ss_pred CHH
Confidence 974
No 20
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=98.75 E-value=1.8e-07 Score=76.26 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=92.0
Q ss_pred EEEEECccceeccC-CCCcEEEEcCCCCCCCC-CcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCC----
Q 028011 83 LVINKGDITKWSVD-GSSDAIVNPANERMLGG-GGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFK---- 156 (215)
Q Consensus 83 I~I~~GDIt~~~vd-~~~DaIVNaaNs~l~~~-gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~---- 156 (215)
|+.++||+|.-..+ .+...|++..|....++ +|++.+|.++. |+..++.+..-+ .+.+..|++.+.+...
T Consensus 2 I~yv~GD~~~p~~~~~~~~iI~H~cN~~G~WG~gGia~al~~k~-p~~~~~Y~~~~~---~~dl~LG~~~li~v~~~~~~ 77 (152)
T cd03331 2 VRYVYGDVTHPSAVCAEDAIIVHCVDDSGHWGRGGLFTALEKRS-DQPRKAYELAGK---MKDLHLGDLHLFPIDDKNSR 77 (152)
T ss_pred eEEEeCccCCCCccCCCCeEEEEEECCCCCCCcchHHHHHHHhC-CcHHHHHHHHHh---cCCCccccEEEEEeccccCC
Confidence 78899999987542 22459999999999999 68999999887 544444443211 1256789999886522
Q ss_pred C-CCceEEEEecccccCCC----ChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCcc
Q 028011 157 L-PASHVIHTVGPIYDADS----NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYL 212 (215)
Q Consensus 157 L-~~k~IIHaVgP~~~~~~----~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P 212 (215)
. +..||...++....... -+...|+.|+..+-..|.. +-.||.+|-|++|.+|+|
T Consensus 78 ~~~~~~va~l~~q~~~~~~~~~~~~~~aL~~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~ 137 (152)
T cd03331 78 LKGPDWVALIVAQHRDKSNPLSGIKLSALEKGLKKIYFAAKQ-KSASVHLPRIGHSTKSFN 137 (152)
T ss_pred CCCCeEEEEEEeEccCCCCCCCccCHHHHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCC
Confidence 1 23689899888755442 2457888898888887765 458999999999999986
No 21
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=94.94 E-value=0.21 Score=48.21 Aligned_cols=128 Identities=19% Similarity=0.172 Sum_probs=86.3
Q ss_pred CceEEEEECccceeccC--C-----------------CCcEEEEcCCCCCCCCCcHHHHHHHHhC-------hHHHHHHh
Q 028011 80 SAALVINKGDITKWSVD--G-----------------SSDAIVNPANERMLGGGGADGAIHRAAG-------PELREACC 133 (215)
Q Consensus 80 ~~~I~I~~GDIt~~~vd--~-----------------~~DaIVNaaNs~l~~~gGV~~aI~~~aG-------~~L~~e~~ 133 (215)
...++++.+|++++-.. . .--++|--++.++....|..+.+.+.|- +.|.++..
T Consensus 252 mhN~RLi~~~~ldlc~~~~~~~~~~~Rlq~alsLYS~~Lsg~Vllvd~~~~~~~~~~~~f~~~C~~sTefHF~~i~~Ql~ 331 (510)
T PF10154_consen 252 MHNLRLISADPLDLCRPLRGDYSKPQRLQTALSLYSSSLSGLVLLVDNRINSYSGIKKDFARVCEQSTEFHFPSIDEQLE 331 (510)
T ss_pred HhhhhhcccCHHHhcCCCcccccchhHHHHHHHHhccCceeEEEEeCCCcccccchHHHHHHHHHhhcccCcCCHHHHHH
Confidence 45778888887765320 0 1246777777778778888888887775 22222211
Q ss_pred hC----C---------c-----------------cCCCcccCCCcEEEccCCCCC-CceEEEEeccc-ccCCC-ChHHHH
Q 028011 134 KV----P---------E-----------------VRPEVRCPIGEARITPGFKLP-ASHVIHTVGPI-YDADS-NPEASL 180 (215)
Q Consensus 134 ~~----~---------~-----------------~~~~~~l~~G~~~iT~a~~L~-~k~IIHaVgP~-~~~~~-~~~~~L 180 (215)
.. . . ......+.+|+++||.-.||. +..|+|.|.-. ...+. ++..-+
T Consensus 332 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~yitrhsnl~~~~vvfhlv~d~~~~~~~~~~r~~~ 411 (510)
T PF10154_consen 332 KIQESVLYARRQRESRSKSQIDSNNSNGGSEGKPKRGSSTLKPGDFYITRHSNLSDVHVVFHLVVDDSLRSSNINSRHPI 411 (510)
T ss_pred HHHHHHhhhhhhhhcccccccCcccccccCCcccccCCCcCCCCceEEecccCcccceEEEEEEecCccccCCCCCcChH
Confidence 11 0 0 011245689999999999997 46689988532 11111 445678
Q ss_pred HHHHHHHHHHHHHCCCcEEEECccccc
Q 028011 181 RNAYKNSLSVAKENNIQYIAFTAISCG 207 (215)
Q Consensus 181 ~~~y~~~L~~a~~~~ikSIAfP~IgTG 207 (215)
-..++|+|+.|..+++.+|.+|.+-+.
T Consensus 412 ~~glrnil~~~~~~~i~t~~iplll~~ 438 (510)
T PF10154_consen 412 ILGLRNILRTASRYDITTLTIPLLLVH 438 (510)
T ss_pred HHHHHHHHHHHHHcCCCeeeehhhhcC
Confidence 889999999999999999999998664
No 22
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=91.82 E-value=0.38 Score=42.77 Aligned_cols=134 Identities=22% Similarity=0.261 Sum_probs=77.2
Q ss_pred CceEEEEECccceecc-----C-CCCcEEEEcCCCCCCCCCcHHH------HHHHHhC--hHH--HHHHhhCCccCCCcc
Q 028011 80 SAALVINKGDITKWSV-----D-GSSDAIVNPANERMLGGGGADG------AIHRAAG--PEL--REACCKVPEVRPEVR 143 (215)
Q Consensus 80 ~~~I~I~~GDIt~~~v-----d-~~~DaIVNaaNs~l~~~gGV~~------aI~~~aG--~~L--~~e~~~~~~~~~~~~ 143 (215)
..+|.|+.+|-.+.-. . ..-=++.|.||...-+||=+.+ +|.+..+ +.| ..+....-+ +...+
T Consensus 55 ~t~i~V~~~dtl~aA~~L~~~~~~~~v~vLNfASa~~PGGG~l~Ga~AQEE~Lcr~S~Ly~sL~~~~~~Y~~~r-~~~~p 133 (266)
T TIGR02452 55 RTELKVVNESTLHAAVRLKESYFAGKVALLNFASAKNPGGGFLNGAQAQEESLCRASALYPCLIKFNEYYEFHR-HQRSP 133 (266)
T ss_pred CceEEEEcCCHHHHHHHHHhhccCCCeEEEeccCcCCCCCCcccCccchHHHHHHhccHHHHHhcchhHhhhhc-ccCCC
Confidence 4679999999543211 0 1235899999887665541111 2333222 122 111111100 11224
Q ss_pred cCCCcEEEccC--------CC-CCCce---EEEEecccccCC-----C---ChHHHHHHHHHHHHHHHHHCCCcEEEECc
Q 028011 144 CPIGEARITPG--------FK-LPASH---VIHTVGPIYDAD-----S---NPEASLRNAYKNSLSVAKENNIQYIAFTA 203 (215)
Q Consensus 144 l~~G~~~iT~a--------~~-L~~k~---IIHaVgP~~~~~-----~---~~~~~L~~~y~~~L~~a~~~~ikSIAfP~ 203 (215)
+..-.++.+|. +. |+-.+ ||-++.|.+... . +..+.++.-++.+|..|..+|.+++.+-+
T Consensus 134 l~~~~~IYSP~V~vFR~d~g~~l~~p~~vsvIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA 213 (266)
T TIGR02452 134 LYSDRAIYSPNVPVFRNDDGDLLNEPFLASFITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGA 213 (266)
T ss_pred CCCCceEECCCcEEEECCCCCcccCCceeeEEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 44444444442 22 22222 566666776421 1 12478888999999999999999999999
Q ss_pred ccccCCCccCC
Q 028011 204 ISCGVYGYLFL 214 (215)
Q Consensus 204 IgTG~~g~P~~ 214 (215)
+|||.|+-|++
T Consensus 214 ~GCG~f~N~p~ 224 (266)
T TIGR02452 214 WGCGVFGNDPA 224 (266)
T ss_pred ccccccCCCHH
Confidence 99999999975
No 23
>PHA03033 hypothetical protein; Provisional
Probab=86.54 E-value=2.6 Score=33.63 Aligned_cols=80 Identities=13% Similarity=-0.000 Sum_probs=54.6
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHH-HHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCCc
Q 028011 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGAD-GAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPAS 160 (215)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~-~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~k 160 (215)
++.-+.|+|.++-...+...++......+.||.|++ --+.+..|. .++.++. ...+|++.+-.-. -|
T Consensus 2 ~i~eIng~~~DLFS~p~~~sLaHCIsAD~~MGaGIA~v~FKkkyg~--V~eLk~Q-------kk~~GeVAvLk~d---~R 69 (142)
T PHA03033 2 KIEYINENIWDFLSDDDNINIISFISADFILCKDDCFIYIKKKYNS--IKELKKQ-------KKKKGEVAYIYKN---NK 69 (142)
T ss_pred ceEEecCcchhhhcCCCcceEeeeehhhhhcCCChhhhhHHHHhCC--HHHHHhh-------ccCCCeEEEEecC---CE
Confidence 466788966555433355788888889999999999 777776776 3335443 3356777665544 37
Q ss_pred eEEEEecccccCC
Q 028011 161 HVIHTVGPIYDAD 173 (215)
Q Consensus 161 ~IIHaVgP~~~~~ 173 (215)
||+..+.-.|-.+
T Consensus 70 yIYYLITKdyie~ 82 (142)
T PHA03033 70 YIIYIIIADYIED 82 (142)
T ss_pred EEEEEEeHHHHHH
Confidence 9999998776553
No 24
>PHA00684 hypothetical protein
Probab=58.72 E-value=68 Score=25.53 Aligned_cols=91 Identities=19% Similarity=0.198 Sum_probs=58.6
Q ss_pred EEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCCceEEEEecccccCCCChHHHH
Q 028011 101 AIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASL 180 (215)
Q Consensus 101 aIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~k~IIHaVgP~~~~~~~~~~~L 180 (215)
+-|-.+|....+++|-+..-.+..|...= -+.=..| .+|.+|.+. .++...-+.+.+
T Consensus 2 IFVFGSNlaG~Hg~GAA~~A~~~~GA~~G-----------~g~G~~G-----~SYAIPT~~-------~~~l~~~~l~~I 58 (128)
T PHA00684 2 IFVFGSNLAGAHGAGAAAAAHKEHGAAWG-----------VGEGRTG-----HSYAIPTKA-------GTVISTLSLPDI 58 (128)
T ss_pred eEEecCCccccccchHHHHHHHHhChhhc-----------cccCCCC-----ceeeccccc-------CCccccccHHHH
Confidence 46788888888998877655554432110 0011223 233333221 111111245789
Q ss_pred HHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 181 ~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
+..+..-+..|.++--.+.-+..||||+.||..+
T Consensus 59 ~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~ 92 (128)
T PHA00684 59 GAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDA 92 (128)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeeeccccccCCHH
Confidence 9999999999999999999999999999998653
No 25
>PLN02214 cinnamoyl-CoA reductase
Probab=57.18 E-value=20 Score=32.10 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=28.1
Q ss_pred CceEEEEecccccCCCChHHHHH---HHHHHHHHHHHHCCCcEEEEC
Q 028011 159 ASHVIHTVGPIYDADSNPEASLR---NAYKNSLSVAKENNIQYIAFT 202 (215)
Q Consensus 159 ~k~IIHaVgP~~~~~~~~~~~L~---~~y~~~L~~a~~~~ikSIAfP 202 (215)
+++|||+++|.... ....+. ....++|+.|.+.+++.|.+.
T Consensus 82 ~d~Vih~A~~~~~~---~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 82 CDGVFHTASPVTDD---PEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred CCEEEEecCCCCCC---HHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 68999999986422 222332 356678888888888877764
No 26
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=56.10 E-value=31 Score=30.25 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=30.3
Q ss_pred CceEEEEecccccCCC-ChH---HHHHHHHHHHHHHHHHCCCcEEEEC
Q 028011 159 ASHVIHTVGPIYDADS-NPE---ASLRNAYKNSLSVAKENNIQYIAFT 202 (215)
Q Consensus 159 ~k~IIHaVgP~~~~~~-~~~---~~L~~~y~~~L~~a~~~~ikSIAfP 202 (215)
|+.|||++.|.-.... ..+ +.=...-+++|+.|.+.+++.+.+.
T Consensus 67 ~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVyt 114 (280)
T PF01073_consen 67 VDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYT 114 (280)
T ss_pred CceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 6799999987533332 122 2222677889999999999988774
No 27
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=51.08 E-value=32 Score=31.56 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=30.2
Q ss_pred CceEEEEecccccCCCC-hHHHHH---HHHHHHHHHHHHCC-CcEEEEC
Q 028011 159 ASHVIHTVGPIYDADSN-PEASLR---NAYKNSLSVAKENN-IQYIAFT 202 (215)
Q Consensus 159 ~k~IIHaVgP~~~~~~~-~~~~L~---~~y~~~L~~a~~~~-ikSIAfP 202 (215)
|++|||++.|.-....+ ..+.+. +...|+|+.|.+.+ ++.|.+.
T Consensus 79 cdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~T 127 (327)
T KOG1502|consen 79 CDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYT 127 (327)
T ss_pred CCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEe
Confidence 89999999996554332 223443 55667888887766 8877774
No 28
>PF01831 Peptidase_C16: Peptidase C16 family; InterPro: IPR002705 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry contains coronavirus cysteine endopeptidases that belong to MEROPS peptidase families C30 (clan PA) and C16 (subfamiles C16A and C16B, clan CA). These peptidase are involved in viral polyprotein processing. All coronaviruses encodes between one and two accessory cysteine proteinases that recognise and process one or two sites in the amino-terminal half of the replicase polyprotein during assembly of the viral replication complex. MHV, HCoV and TGEV encode two accesssory proteinases, called coronavirus papain-like proteinase 1 and 2 (PL1-PRO and PL2-PRO). IBV and SARS encodes only one called PL-PRO []. Coronavirus papain-like proteinases 1 and 2 have restricted specificities, cleaving respectively two and one bond(s)in the polyprotein. This restricted activity may be due to extended specificity sites: Arg or Lys at the cleavage site position P5 are required for PL1-PRO [], and Phe at the cleavage site position P6 is required for PL2-PRO []. PL1-PRO releases p28 and p65 from the N terminus of the polyprotein; PL2-PRO cleaves between p210 and p150. ; GO: 0003968 RNA-directed RNA polymerase activity, 0008234 cysteine-type peptidase activity, 0006508 proteolysis
Probab=49.93 E-value=5.7 Score=34.02 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=29.3
Q ss_pred ccccccccCCCCCCCceeecCCCceEEEEECcc
Q 028011 58 VSVTMSFSSDQRSEDGHFKLSESAALVINKGDI 90 (215)
Q Consensus 58 ~~~~~~~~~~~~~~~~~f~~~~~~~I~I~~GDI 90 (215)
+++.|+|+|++......|...-.+++..++|||
T Consensus 216 vghgmsfsms~feiaqlyg~citpnvcfvkgdi 248 (249)
T PF01831_consen 216 VGHGMSFSMSSFEIAQLYGSCITPNVCFVKGDI 248 (249)
T ss_pred eecceeEecCHHHHHHHhccccCCceEEEeccc
Confidence 556799999999999889888789999999998
No 29
>PLN03104 FHL FAR-RED-ELONGATED HYPOCOTYL1-LIKE; Provisional
Probab=45.92 E-value=15 Score=30.41 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=29.5
Q ss_pred CCCCCCCcCCCCCCccceeechhhHHHHhhhcccccCC
Q 028011 13 ATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTISVGD 50 (215)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 50 (215)
|.-.|+++||.|..+.++.+ +.|...+|+|..+..+
T Consensus 6 nnekPSeinSnIltf~Iv~v--E~ldvSKKRK~qaeeS 41 (201)
T PLN03104 6 NNEKPSEINSNILTFMIVAV--ESLDVSKKRKLQAEES 41 (201)
T ss_pred CCCCcchhcccccchheeee--hhhhhhhhhhcccccc
Confidence 55689999999988888887 7799999998874433
No 30
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=41.17 E-value=57 Score=29.10 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=32.2
Q ss_pred CceEEEEecccccCCC--ChHHHH---HHHHHHHHHHHHHCCCcEEEECcccccCCC
Q 028011 159 ASHVIHTVGPIYDADS--NPEASL---RNAYKNSLSVAKENNIQYIAFTAISCGVYG 210 (215)
Q Consensus 159 ~k~IIHaVgP~~~~~~--~~~~~L---~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g 210 (215)
+++|||.++....... +..... -.+-.++|+.|.+.+++.+.++. ++++||
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S-S~~vyg 146 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA-SSSTYG 146 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee-chHhhC
Confidence 5799999975321111 122222 24566888999999999988855 445565
No 31
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=38.41 E-value=52 Score=25.90 Aligned_cols=35 Identities=31% Similarity=0.492 Sum_probs=28.6
Q ss_pred CceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEE
Q 028011 159 ASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAF 201 (215)
Q Consensus 159 ~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAf 201 (215)
|+.|||+++|.+. + ...++++++.+.+.+++.+.+
T Consensus 61 ~d~vi~~~~~~~~------~--~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 61 ADAVIHAAGPPPK------D--VDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp SSEEEECCHSTTT------H--HHHHHHHHHHHHHTTSSEEEE
T ss_pred cchhhhhhhhhcc------c--cccccccccccccccccccee
Confidence 7899999988654 1 677888888888999988776
No 32
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=38.20 E-value=71 Score=29.36 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=28.8
Q ss_pred CCceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEE
Q 028011 158 PASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAF 201 (215)
Q Consensus 158 ~~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAf 201 (215)
+++.|||++++.+....+..+.-.....++++.|.+.+++.+.+
T Consensus 136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~ 179 (390)
T PLN02657 136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVL 179 (390)
T ss_pred CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEE
Confidence 47899999887543222222222345668888888889887765
No 33
>PLN02778 3,5-epimerase/4-reductase
Probab=36.62 E-value=62 Score=28.37 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=27.6
Q ss_pred CCceEEEEecccccCC-----CChHHHHH---HHHHHHHHHHHHCCCcEEEE
Q 028011 158 PASHVIHTVGPIYDAD-----SNPEASLR---NAYKNSLSVAKENNIQYIAF 201 (215)
Q Consensus 158 ~~k~IIHaVgP~~~~~-----~~~~~~L~---~~y~~~L~~a~~~~ikSIAf 201 (215)
.+++|||++++..... .+..+.+. ....++++.|.+.+++-|.+
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4689999998753211 12222222 34557888898889886654
No 34
>CHL00194 ycf39 Ycf39; Provisional
Probab=36.44 E-value=81 Score=27.64 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=26.9
Q ss_pred CceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEE
Q 028011 159 ASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAF 201 (215)
Q Consensus 159 ~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAf 201 (215)
++.|||+++..+.......+.=.....++++.|.+.+++.+.+
T Consensus 65 ~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~ 107 (317)
T CHL00194 65 VTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIF 107 (317)
T ss_pred CCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEE
Confidence 5678898776554321111112245578888888889987766
No 35
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=34.17 E-value=1.2e+02 Score=26.09 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=26.9
Q ss_pred CceEEEEecccccCCCChH-HHHH---HHHHHHHHHHHHC-CCcEEEEC
Q 028011 159 ASHVIHTVGPIYDADSNPE-ASLR---NAYKNSLSVAKEN-NIQYIAFT 202 (215)
Q Consensus 159 ~k~IIHaVgP~~~~~~~~~-~~L~---~~y~~~L~~a~~~-~ikSIAfP 202 (215)
+++|||.++|......... ..+. ....++|+.|.+. +++.+.+.
T Consensus 77 ~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~ 125 (322)
T PLN02662 77 CEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVT 125 (322)
T ss_pred CCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 5799999998543221222 2222 3456677777776 78877763
No 36
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=32.61 E-value=92 Score=26.54 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=27.6
Q ss_pred CCceEEEEecccc----cCCCChHHH---HHHHHHHHHHHHHHCCCcEEEE
Q 028011 158 PASHVIHTVGPIY----DADSNPEAS---LRNAYKNSLSVAKENNIQYIAF 201 (215)
Q Consensus 158 ~~k~IIHaVgP~~----~~~~~~~~~---L~~~y~~~L~~a~~~~ikSIAf 201 (215)
.+++|||++++.- ... ..... -.....++|+.|.+.+++.+.+
T Consensus 49 ~~d~Vih~A~~~~~~~~~~~-~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 49 KPTYVILAAAKVGGIHANMT-YPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred CCCEEEEeeeeecccchhhh-CcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 3579999998631 111 12222 2235667888898999888877
No 37
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.06 E-value=95 Score=27.31 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccC
Q 028011 177 EASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLF 213 (215)
Q Consensus 177 ~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~ 213 (215)
.+.|..-.+.+|.+|..++.+.+.+-+.|||+|+=.+
T Consensus 199 ~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdP 235 (285)
T COG4295 199 REALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDP 235 (285)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCH
Confidence 4678888999999999999999999999999998654
No 38
>KOG4506 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.80 E-value=80 Score=30.00 Aligned_cols=62 Identities=18% Similarity=0.125 Sum_probs=40.5
Q ss_pred cCCCcEEEccCCCCCC-ceEEEEeccc-ccCCC-ChHHHHHHHHHHHHHHHHHCCCcEEEECccc
Q 028011 144 CPIGEARITPGFKLPA-SHVIHTVGPI-YDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAIS 205 (215)
Q Consensus 144 l~~G~~~iT~a~~L~~-k~IIHaVgP~-~~~~~-~~~~~L~~~y~~~L~~a~~~~ikSIAfP~Ig 205 (215)
+-+|++.++....+.- ..++|.+.-. ...+. ++..---..++|+++.|..+.+.+|.+|.|-
T Consensus 417 llP~eal~qd~sc~seihiafHL~VDd~lkS~eInaR~P~iaGlRNIiktaar~d~sTIhIPLLL 481 (598)
T KOG4506|consen 417 LLPGEALIQDHSCLSEIHIAFHLCVDDHLKSGEINARDPAIAGLRNIIKTAARHDISTIHIPLLL 481 (598)
T ss_pred cCchhhhhcCccccchhheeeEeeehhhhhcCCccCcCcHHHHHHHHHHHHHhcCCceeeeeeEE
Confidence 4468888877766643 3457765322 11111 2333334678999999999999999999874
No 39
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=27.05 E-value=42 Score=31.95 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=20.2
Q ss_pred CceEEEEECccceeccCCCCcEEEEcC
Q 028011 80 SAALVINKGDITKWSVDGSSDAIVNPA 106 (215)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaa 106 (215)
+.+|.|++||+.+++...++|+||.=-
T Consensus 240 ~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 240 GDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp TTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred CCeEEEEeCcccCCCCCCceeEEEEec
Confidence 368999999999998766899999875
No 40
>PTZ00325 malate dehydrogenase; Provisional
Probab=26.83 E-value=1.6e+02 Score=26.68 Aligned_cols=44 Identities=9% Similarity=0.045 Sum_probs=33.4
Q ss_pred CCceEEEEecccccCCCChHHHHHH---HHHHHHHHHHHCCCcEEEE
Q 028011 158 PASHVIHTVGPIYDADSNPEASLRN---AYKNSLSVAKENNIQYIAF 201 (215)
Q Consensus 158 ~~k~IIHaVgP~~~~~~~~~~~L~~---~y~~~L~~a~~~~ikSIAf 201 (215)
.|+.|||++|+.-..+.+-.+.|.. .++++++...+.+.+.|.+
T Consensus 76 gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~ivi 122 (321)
T PTZ00325 76 GADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVG 122 (321)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 4789999999864433333566776 8899999999999988776
No 41
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=26.10 E-value=1.7e+02 Score=25.39 Aligned_cols=44 Identities=23% Similarity=0.426 Sum_probs=26.1
Q ss_pred CceEEEEecccccCCCCh-HHHHH---HHHHHHHHHHHHC-CCcEEEEC
Q 028011 159 ASHVIHTVGPIYDADSNP-EASLR---NAYKNSLSVAKEN-NIQYIAFT 202 (215)
Q Consensus 159 ~k~IIHaVgP~~~~~~~~-~~~L~---~~y~~~L~~a~~~-~ikSIAfP 202 (215)
+++|||+++|......+. ...+. ....++|+.|.+. +++.|.+.
T Consensus 78 ~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~ 126 (322)
T PLN02986 78 CDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILT 126 (322)
T ss_pred CCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEe
Confidence 579999999853221111 12233 3345677777764 67777764
No 42
>PF09039 HTH_Tnp_Mu_2: Mu DNA binding, I gamma subdomain; InterPro: IPR015126 This domain is responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated []. ; PDB: 2EZL_A 2EZH_A 2EZI_A 2EZK_A.
Probab=24.71 E-value=48 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEECcccc
Q 028011 179 SLRNAYKNSLSVAKENNIQYIAFTAISC 206 (215)
Q Consensus 179 ~L~~~y~~~L~~a~~~~ikSIAfP~IgT 206 (215)
.+..||+.....|.++|+ .+|+..|
T Consensus 50 s~~~cyrr~~~~a~~~Gw---~iPS~~t 74 (108)
T PF09039_consen 50 SFSACYRRLKRAAKENGW---PIPSEKT 74 (108)
T ss_dssp -HHHHHHHHHHHHHHHT--------HHH
T ss_pred CHHHHHHHHHHHHHHcCC---CCCCHHH
Confidence 689999999999999997 6887665
No 43
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=23.24 E-value=1.7e+02 Score=24.82 Aligned_cols=50 Identities=26% Similarity=0.175 Sum_probs=33.7
Q ss_pred ceEEEEecccccCCCC------hHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCC
Q 028011 160 SHVIHTVGPIYDADSN------PEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYG 210 (215)
Q Consensus 160 k~IIHaVgP~~~~~~~------~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g 210 (215)
+.|||+++..+..... ....-....+++|+.|...+.+.+.+ .-+.+.++
T Consensus 66 d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~-~ss~~~~~ 121 (314)
T COG0451 66 DAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVF-ASSVSVVY 121 (314)
T ss_pred CEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE-eCCCceEC
Confidence 6899999876544331 12334456778888888899999999 44444443
No 44
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=20.92 E-value=1.3e+02 Score=22.81 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=31.6
Q ss_pred ceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECc
Q 028011 160 SHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTA 203 (215)
Q Consensus 160 k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~ 203 (215)
..|.|+..|.|-.+.- .=...+..+|+.|.+.+++-|.+|.
T Consensus 40 i~i~HT~V~d~lrGqG---ia~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 40 IIIDHTYVPDELRGQG---IAQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred EEEecCcCCHHHcCCc---HHHHHHHHHHHHHHHcCCeEcccch
Confidence 5788999888766542 2345577889999999999998886
No 45
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=20.52 E-value=29 Score=27.95 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=16.9
Q ss_pred hhHHHHHHhcCCCCCCCCcCCC
Q 028011 2 LTRRLIRFLLPATQLPQATNSS 23 (215)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (215)
.++++||||| ++-+|++.+.+
T Consensus 46 ~l~ell~FYL-d~V~p~a~~~~ 66 (137)
T smart00188 46 ALSEMIQFYL-EEVMPQAENHG 66 (137)
T ss_pred HHHHHHHHHH-HHHHHHHhcCC
Confidence 3689999999 77788886665
Done!