Query 028011
Match_columns 215
No_of_seqs 152 out of 1274
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 07:23:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q6z_A Poly [ADP-ribose] polym 100.0 3E-40 1E-44 280.7 11.3 135 74-214 30-166 (214)
2 3q71_A Poly [ADP-ribose] polym 100.0 1.2E-39 4.2E-44 278.2 13.2 131 77-214 35-167 (221)
3 1yd9_A Core histone macro-H2A. 100.0 1.5E-39 5.1E-44 272.3 13.0 131 77-214 15-145 (193)
4 2xd7_A Core histone macro-H2A. 100.0 2E-39 6.9E-44 271.5 13.5 131 77-214 15-148 (193)
5 1spv_A Putative polyprotein/ph 100.0 4.7E-39 1.6E-43 267.4 14.9 129 80-214 2-131 (184)
6 2x47_A Macro domain-containing 100.0 6.5E-39 2.2E-43 275.9 13.9 132 73-214 52-187 (235)
7 4abl_A Poly [ADP-ribose] polym 100.0 7.4E-39 2.5E-43 266.3 13.5 128 67-214 9-136 (183)
8 3eti_A X (ADRP) domain, macro 100.0 2.2E-38 7.4E-43 260.3 7.5 122 80-214 9-134 (168)
9 2dx6_A Hypothetical protein TT 100.0 3.7E-37 1.3E-41 249.9 13.1 121 82-214 3-123 (159)
10 3kh6_A Poly [ADP-ribose] polym 100.0 1.3E-36 4.6E-41 255.7 13.2 126 69-214 22-147 (199)
11 3ejf_A Non-structural protein 100.0 3.4E-37 1.2E-41 254.8 7.6 128 77-214 10-141 (176)
12 3gqe_A Non-structural protein 100.0 2.6E-36 8.8E-41 248.0 11.7 118 80-215 3-122 (168)
13 1vhu_A Hypothetical protein AF 100.0 1.1E-36 3.7E-41 258.3 8.4 127 80-214 20-159 (211)
14 3gpg_A NSP3, non-structural pr 100.0 5.7E-36 2E-40 245.9 10.5 118 80-215 9-128 (168)
15 1njr_A 32.1 kDa protein in ADH 100.0 6E-36 2.1E-40 263.6 10.9 173 3-214 2-203 (284)
16 2acf_A Replicase polyprotein 1 100.0 3.3E-36 1.1E-40 250.2 8.6 125 80-214 19-143 (182)
17 3ejg_A Non-structural protein 100.0 1.2E-35 4E-40 248.7 8.9 123 80-214 37-159 (193)
18 2vri_A Non-structural protein 100.0 3.2E-35 1.1E-39 242.5 7.7 133 68-214 6-138 (174)
19 4gua_A Non-structural polyprot 100.0 4.9E-32 1.7E-36 253.9 11.0 117 80-214 343-461 (670)
20 2jyc_A Uncharacterized protein 99.9 1.9E-27 6.5E-32 193.6 11.9 122 77-214 16-138 (160)
21 2eee_A Uncharacterized protein 99.9 1.2E-27 4.2E-32 192.2 10.4 119 80-214 8-127 (149)
22 2fg1_A Conserved hypothetical 99.9 6.9E-26 2.3E-30 183.4 9.7 126 82-214 5-136 (158)
23 3sig_A PArg, poly(ADP-ribose) 97.6 2.5E-05 8.6E-10 68.2 3.3 53 162-214 172-230 (277)
24 2kwv_A RAD30 homolog B, DNA po 70.7 0.45 1.5E-05 30.4 -1.3 35 12-46 8-42 (48)
25 3dhn_A NAD-dependent epimerase 51.4 15 0.00052 28.6 4.1 43 159-202 68-110 (227)
26 2khu_A Immunoglobulin G-bindin 48.8 3.3 0.00011 30.6 -0.3 33 13-45 61-93 (108)
27 3h2s_A Putative NADH-flavin re 31.3 44 0.0015 25.7 3.8 41 159-202 63-103 (224)
28 3ew7_A LMO0794 protein; Q8Y8U8 24.5 70 0.0024 24.3 3.9 46 159-208 62-107 (221)
29 3m2p_A UDP-N-acetylglucosamine 24.3 1.3E+02 0.0044 24.4 5.7 52 158-210 62-114 (311)
30 2c29_D Dihydroflavonol 4-reduc 23.9 1.3E+02 0.0045 24.7 5.7 52 159-210 78-134 (337)
31 3sxp_A ADP-L-glycero-D-mannohe 23.2 1.4E+02 0.0048 24.9 5.8 43 158-201 90-135 (362)
32 3gpi_A NAD-dependent epimerase 20.7 25 0.00087 28.5 0.5 45 158-202 63-107 (286)
33 4hc4_A Protein arginine N-meth 20.7 81 0.0028 27.8 3.9 40 81-120 132-171 (376)
No 1
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=100.00 E-value=3e-40 Score=280.72 Aligned_cols=135 Identities=36% Similarity=0.541 Sum_probs=123.6
Q ss_pred eeecCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcc
Q 028011 74 HFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITP 153 (215)
Q Consensus 74 ~f~~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~ 153 (215)
.+.+.++.+|.||+||||++++ |||||+||+.|.+++||++||++++|++|++||+++++. .+.+++|++++|+
T Consensus 30 ~~~~~~g~~I~v~~GDIt~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~ 103 (214)
T 3q6z_A 30 RTVLAPGVVLIVQQGDLARLPV----DVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKR--EGRLLPGNATISK 103 (214)
T ss_dssp EEEEETTEEEEEEECCTTSCSS----SEEEEEECTTCCCCSHHHHHHHHHHCTHHHHHHHHHHHH--HCCCCTTCEEEEE
T ss_pred EEEcCCCcEEEEEecccccCcC----CEEEeCCCCCCCCCchHHHHHHHhhhHHHHHHHHHHHHH--cCCCCCCeEEEEc
Confidence 4566778999999999999976 999999999999999999999999999999999987643 2489999999999
Q ss_pred CCCCCCceEEEEecccccCCCC--hHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 154 GFKLPASHVIHTVGPIYDADSN--PEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 154 a~~L~~k~IIHaVgP~~~~~~~--~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
+|+||||||||+|||.|+.+.. +.+.|++||++||++|++++++|||||+||||+||||++
T Consensus 104 ~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~ 166 (214)
T 3q6z_A 104 AGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLG 166 (214)
T ss_dssp CTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHH
T ss_pred CCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHH
Confidence 9999999999999999987542 357999999999999999999999999999999999975
No 2
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=278.16 Aligned_cols=131 Identities=22% Similarity=0.353 Sum_probs=120.4
Q ss_pred cCCCceEEEEECccceeccCCCCcEEEEcCCCCC-CCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCC
Q 028011 77 LSESAALVINKGDITKWSVDGSSDAIVNPANERM-LGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGF 155 (215)
Q Consensus 77 ~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l-~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~ 155 (215)
+.++.+|.||+||||++++ |||||+||+.| .+++||++||+++||++|++||+++.+ ++++++|++++|++|
T Consensus 35 t~~g~~I~i~~GDIt~~~v----DAIVNaAN~~l~~~gGGV~~AI~~aaG~~L~~ec~~~~~---~~~~~~G~a~iT~g~ 107 (221)
T 3q71_A 35 SPGGLQMLLVKEGVQNAKT----DVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQ---GVAVSMGTVLKTSSW 107 (221)
T ss_dssp CTTCCEEEEEESCGGGCCS----SEEEEECCTTCCTTSSHHHHHHHHHHCTHHHHHHHHHHH---TSCCCTTCEEEEECT
T ss_pred ecCCcEEEEEeCcccCCcC----CEEEECCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHhc---cCCCCCCeEEEEcCC
Confidence 4457999999999999876 99999999999 588999999999999999999998752 458999999999999
Q ss_pred CCCCceEEEEecccccCCCC-hHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 156 KLPASHVIHTVGPIYDADSN-PEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 156 ~L~~k~IIHaVgP~~~~~~~-~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
+||||||||+|||.|+.+.. +.+.|++||++||++|++++++|||||+||||+||||++
T Consensus 108 ~Lp~k~VIHtVgP~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~ 167 (221)
T 3q71_A 108 NLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKN 167 (221)
T ss_dssp TSSSSEEEEECCCCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHH
T ss_pred CCCCCEEEEeCCCCCcCCCchHHHHHHHHHHHHHHHHHHhCCceEeeccccCCCCCCCHH
Confidence 99999999999999987653 458999999999999999999999999999999999975
No 3
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=100.00 E-value=1.5e-39 Score=272.33 Aligned_cols=131 Identities=27% Similarity=0.445 Sum_probs=120.5
Q ss_pred cCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCC
Q 028011 77 LSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFK 156 (215)
Q Consensus 77 ~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~ 156 (215)
...+.+|+|++||||++++ |||||+||+.|.+++||++||++++|++|++||+++++. .+.+++|++++|++|+
T Consensus 15 ~~~~~~i~i~~GDIt~~~~----DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~~~~ 88 (193)
T 1yd9_A 15 LFLGQKLQVVQADIASIDS----DAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLELRKK--NGPLEVAGAAVSAGHG 88 (193)
T ss_dssp CTTSCEEEEECSCGGGCCC----SEEEEECCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHH--HCSCCTTCEEEEECTT
T ss_pred cCCCCEEEEEeCccCcCcC----CEEEECCCccCCCCchHHHHHHHHhhHHHHHHHHHHHHH--cCCCCCCCEEEecCCC
Confidence 4447899999999999976 999999999999999999999999999999999987643 2389999999999999
Q ss_pred CCCceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 157 LPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 157 L~~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
||||||||+|||.|+. ....+.|++||++||++|.+++++|||||+||||+||||++
T Consensus 89 L~~k~VIH~vgP~~~~-~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~ 145 (193)
T 1yd9_A 89 LPAKFVIHCNSPVWGS-DKCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQ 145 (193)
T ss_dssp SSSSEEEEECCCCTTS-TTHHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHH
T ss_pred CCCCEEEEeCCCCcCC-cchHHHHHHHHHHHHHHHHHhCCceEeecccccCCCCCCHH
Confidence 9999999999999975 35678999999999999999999999999999999999975
No 4
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=271.45 Aligned_cols=131 Identities=24% Similarity=0.343 Sum_probs=121.2
Q ss_pred cCCCceEEEEECcccee---ccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcc
Q 028011 77 LSESAALVINKGDITKW---SVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITP 153 (215)
Q Consensus 77 ~~~~~~I~I~~GDIt~~---~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~ 153 (215)
+..+.+|++++||||++ ++ |||||+||+.|.+++||++||++++|++|++||+++++. .+.+++|++++|+
T Consensus 15 ~~~~~~i~i~~GDIt~~~~~~~----DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~ 88 (193)
T 2xd7_A 15 LVLGQKLSLTQSDISHIGSMRV----EGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKS--QGPLEVAEAAVSQ 88 (193)
T ss_dssp CTTSCEEEEEECCGGGGGGCCC----SEEEEEECTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHH--TCSCCTTCEEEEE
T ss_pred cCCCCEEEEEeCcccccCCCCC----CEEEECCCccCCCccHHHHHHHHHhhHHHHHHHHHHHHH--cCCCCCCCeEEee
Confidence 34478999999999999 76 999999999999999999999999999999999987643 2489999999999
Q ss_pred CCCCCCceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 154 GFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 154 a~~L~~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
+|+||||||||+|||.|+.. ...+.|++||++||++|.+++++|||||+||||+||||++
T Consensus 89 ~~~L~~k~VIH~vgP~~~~~-~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~ 148 (193)
T 2xd7_A 89 SSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQ 148 (193)
T ss_dssp CTTSSSSEEEEEECCCTTST-THHHHHHHHHHHHHHHHHHTTCSEEEECCCCCSTTCCCHH
T ss_pred CCCCCCCEEEEECCCcCCCc-chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHH
Confidence 99999999999999999754 5678999999999999999999999999999999999975
No 5
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=100.00 E-value=4.7e-39 Score=267.36 Aligned_cols=129 Identities=50% Similarity=0.798 Sum_probs=118.9
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCC
Q 028011 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (215)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~ 159 (215)
+.+|++++||||++++ |||||+||+.+.+++||++||++++|++|++||+++++. .+.+++|++++|++|+|||
T Consensus 2 ~~~i~i~~GDIt~~~~----DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~e~~~~~~~--~g~~~~G~a~iT~~~~L~~ 75 (184)
T 1spv_A 2 KTRIHVVQGDITKLAV----DVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ--QGDCPTGHAVITLAGDLPA 75 (184)
T ss_dssp -CCEEEEESCGGGCCC----SEEEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHHHHHH--HCSCCTTCEEEECCTTSSS
T ss_pred CCeEEEEeCcCCcCCC----CEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHHh--cCCCCCCCEEEeeCCCCCC
Confidence 3579999999999976 999999999999999999999999999999999988642 2489999999999999999
Q ss_pred ceEEEEecccccCCC-ChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 160 SHVIHTVGPIYDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 160 k~IIHaVgP~~~~~~-~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
|||||+|||.|+.+. ...+.|++||++||++|.+++++|||||+||||+||||++
T Consensus 76 k~VIH~vgP~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~ 131 (184)
T 1spv_A 76 KAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRA 131 (184)
T ss_dssp SEEEEECCCCCSSSSSSHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHH
T ss_pred CEEEEEcCCcccCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHH
Confidence 999999999998754 4678999999999999999999999999999999999975
No 6
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.5e-39 Score=275.94 Aligned_cols=132 Identities=46% Similarity=0.790 Sum_probs=120.0
Q ss_pred ceeecCC--CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEE
Q 028011 73 GHFKLSE--SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEAR 150 (215)
Q Consensus 73 ~~f~~~~--~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~ 150 (215)
..|+... |.+|+|++||||++++ |||||+||+.|.+++||++||++++|++|++||+++. .+++|+++
T Consensus 52 ~~~~~~~~~~~~i~i~~GDIt~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~g------~~~~G~a~ 121 (235)
T 2x47_A 52 PRYKKDKQLNEKISLLRSDITKLEV----DAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQ------SCKTGKAK 121 (235)
T ss_dssp -CCCCCHHHHTTEEEEESCGGGEES----SEEEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHTSC------CCCBTCEE
T ss_pred CCCCcccccCCEEEEEeCccCcccC----CEEEEecCcccCCccHHHHHHHHHhCHHHHHHHHHhC------CCCCCceE
Confidence 3455533 6899999999999976 9999999999999999999999999999999998752 79999999
Q ss_pred EccCCCCCCceEEEEecccccCCC--ChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 151 ITPGFKLPASHVIHTVGPIYDADS--NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 151 iT~a~~L~~k~IIHaVgP~~~~~~--~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
+|++|+|||+||||+|||.|+... ...+.|++||++||++|.+++++|||||+||||+||||++
T Consensus 122 iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfP~IstG~~g~p~~ 187 (235)
T 2x47_A 122 ITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCE 187 (235)
T ss_dssp EEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTCSTTSCCHH
T ss_pred EecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHH
Confidence 999999999999999999997643 3568999999999999999999999999999999999975
No 7
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=100.00 E-value=7.4e-39 Score=266.30 Aligned_cols=128 Identities=24% Similarity=0.276 Sum_probs=118.9
Q ss_pred CCCCCCceeecCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCC
Q 028011 67 DQRSEDGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPI 146 (215)
Q Consensus 67 ~~~~~~~~f~~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~ 146 (215)
++..+.+.+++. +.+|++++||||++++ |||||+||+++.+++||++||++++|++|++||+++. .+++
T Consensus 9 ~~~~~~~~~~ig-~~~i~i~~GDIt~~~~----DaIVNaaN~~l~~ggGV~~aI~~aaG~~l~~ec~~~~------~~~~ 77 (183)
T 4abl_A 9 SPDSGVYEMKIG-SIIFQVASGDITKEEA----DVIVNSTSNSFNLKAGVSKAILECAGQNVERECSQQA------QQRK 77 (183)
T ss_dssp CSSTTCEEEEET-TEEEEEEESCGGGCBC----SEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHH------HHSC
T ss_pred cCCCCceEEEEC-CEEEEEEeCcccCccc----CEEEECCCCCCCCCccHHHHHHHHhhHHHHHHHHHhc------CCCC
Confidence 345566677775 6999999999999876 9999999999999999999999999999999999874 7899
Q ss_pred CcEEEccCCCCCCceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 147 GEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 147 G~~~iT~a~~L~~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
|++++|++|+||||||||+|||.| |++||++||++|++++++|||||+||||++|||++
T Consensus 78 G~a~iT~~~~L~~k~VIH~vgP~~---------L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~ 136 (183)
T 4abl_A 78 NDYIITGGGFLRCKNIIHVIGGND---------VKSSVSSVLQECEKKNYSSICLPAIGTGNAKQHPD 136 (183)
T ss_dssp CSEEEEECTTSBSSEEEEEETTSC---------HHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHH
T ss_pred CceEEecCCCCCCCEEEEeCcHHH---------HHHHHHHHHHHHHHcCCCeEeeccccCCCCCcCHH
Confidence 999999999999999999999976 99999999999999999999999999999999975
No 8
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=100.00 E-value=2.2e-38 Score=260.34 Aligned_cols=122 Identities=24% Similarity=0.274 Sum_probs=111.4
Q ss_pred CceEEEEECccce----eccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCC
Q 028011 80 SAALVINKGDITK----WSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGF 155 (215)
Q Consensus 80 ~~~I~I~~GDIt~----~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~ 155 (215)
..+|++|+||||+ +++ |||||+||++|.+++||++||++++|++|++||+++++.+ +++++|++++|++|
T Consensus 9 ~~~i~l~~GDIt~~~~~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~--g~~~~G~a~iT~g~ 82 (168)
T 3eti_A 9 AGKVSFYQGDLDVLINFLEP----DVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSS--KAIAPGNAVLFENV 82 (168)
T ss_dssp ETTEEEEESCHHHHHHHHCC----SEEEEEECTTCCCCSTTHHHHHHHTTTHHHHHHHHHHTTS--CCCCTTEEEEEEEE
T ss_pred CCeEEEEeCcccccCCCCCC----CEEEeCCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCEEEecCC
Confidence 4689999999999 665 9999999999999999999999999999999999987533 48999999999999
Q ss_pred CCCCceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 156 KLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 156 ~L~~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
||++||||+|||.|... .+.+.|++||++||++ .+|||||+||||+||||++
T Consensus 83 -l~~~~VIHtVgP~~~~~-~~~~~L~~~y~~~L~~-----~~SIAfP~IstG~~g~P~~ 134 (168)
T 3eti_A 83 -LEHLSVMNAVGPRNGDS-RVEGKLCNVYKAIAKC-----DGKILTPLISVGIFKVKLE 134 (168)
T ss_dssp -ETTEEEEEEECCCTTST-THHHHHHHHHHHHHTS-----CSCEEECCTTBSTTCBCHH
T ss_pred -CCccEEEEecCCCCCcc-hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHH
Confidence 99999999999999653 5678999999999974 4899999999999999975
No 9
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=100.00 E-value=3.7e-37 Score=249.89 Aligned_cols=121 Identities=34% Similarity=0.483 Sum_probs=114.1
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCCce
Q 028011 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASH 161 (215)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~k~ 161 (215)
+|++++|||+++++ |||||++|+++.+++||+++|++++|++++++|++.. .+++|++++|++++|||+|
T Consensus 3 ~i~i~~GDI~~~~~----daIVnaaN~~l~~ggGv~~aI~~~~G~~l~~~c~~~g------~~~~G~a~it~~~~L~~~~ 72 (159)
T 2dx6_A 3 RIRVVQGDITEFQG----DAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIG------KIRVGEAAVTGAGNLPVRY 72 (159)
T ss_dssp EEEEEESCGGGCCS----SEEEEEEETTCCCCSTTHHHHHHHHCTHHHHHHHHHC------CCCTTCEEEEECTTSSSSE
T ss_pred EEEEEECcCCcCCC----CEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHhcC------CCCCCcEEEecCCCCCCCE
Confidence 68999999999876 9999999999999999999999999999999998742 7999999999999999999
Q ss_pred EEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 162 VIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 162 IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
|||+|||.|. . ...+.|++||++||++|.+++++|||||+||||++|||++
T Consensus 73 Vih~vgp~~~-~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~ 123 (159)
T 2dx6_A 73 VIHAAVLGDE-P-ASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVE 123 (159)
T ss_dssp EEEEEEESSS-C-CCHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHH
T ss_pred EEEEeCCCCC-C-chHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCCCCCHH
Confidence 9999999997 3 4578999999999999999999999999999999999975
No 10
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=100.00 E-value=1.3e-36 Score=255.70 Aligned_cols=126 Identities=24% Similarity=0.335 Sum_probs=115.7
Q ss_pred CCCCceeecCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCc
Q 028011 69 RSEDGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGE 148 (215)
Q Consensus 69 ~~~~~~f~~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~ 148 (215)
....+.+++. +.+|++++||||++++ |||||+||+.+.+++||++||++++|++|++||+++. .+++|+
T Consensus 22 ~~~~~~~~i~-~~~i~i~~GDIt~~~v----DaIVNaaN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~------~~~~G~ 90 (199)
T 3kh6_A 22 SMTAYEMKIG-AITFQVATGDIATEQV----DVIVNSTARTFNRKSGVSRAILEGAGQAVESECAVLA------AQPHRD 90 (199)
T ss_dssp CCCEEEEEET-TEEEEEEESCGGGCCS----SEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHH------TSCCCS
T ss_pred CCCceEEEEC-CEEEEEEecccccCcC----CEEEECCCCCCCCCchHHHHHHHHhhHHHHHHHHHhC------CCCCCe
Confidence 3344555664 6899999999999876 9999999999999999999999999999999999864 789999
Q ss_pred EEEccCCCCCCceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 149 ARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 149 ~~iT~a~~L~~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
+++|++|+||||||||+|||. .|++||++||++|++++++|||||+||||++|||++
T Consensus 91 a~iT~g~~L~~k~VIH~vgp~---------~L~~~y~~~L~~a~~~~i~SIAfP~IgtG~~G~p~~ 147 (199)
T 3kh6_A 91 FIITPGGCLKCKIIIHVPGGK---------DVRKTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPI 147 (199)
T ss_dssp SEEEECTTSSSSEEEEEETTS---------CHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHH
T ss_pred EEEecCCCCCCCEEEEeCCCH---------HHHHHHHHHHHHHHHcCCCEEeecccccCCCCcCHH
Confidence 999999999999999999984 499999999999999999999999999999999975
No 11
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=100.00 E-value=3.4e-37 Score=254.83 Aligned_cols=128 Identities=27% Similarity=0.319 Sum_probs=114.8
Q ss_pred cCCCceEEEEECccceeccCC----CCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEc
Q 028011 77 LSESAALVINKGDITKWSVDG----SSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARIT 152 (215)
Q Consensus 77 ~~~~~~I~I~~GDIt~~~vd~----~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT 152 (215)
...+.+|++|+||||++++|. ++|||||+||++|.+++||++|||+++|++|++||+++++.+ ++++ +++|
T Consensus 10 ~~~~~~i~v~~GDIt~~~vDa~~~~~~DaIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~--g~~~---a~iT 84 (176)
T 3ejf_A 10 KPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKH--GPQQ---RLVT 84 (176)
T ss_dssp CCSSCEEEEEESCHHHHHHHHHHHHSSEEEEEECCTTCCCCSHHHHHHHHHHCHHHHHHHHHHHHHH--CCCS---EEEE
T ss_pred CCCCceEEEEeeeCeEEeecccccCCCCEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHhc--CCCC---eeec
Confidence 445789999999999998742 678999999999999999999999999999999999986432 3566 8999
Q ss_pred cCCCCCCceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 153 PGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 153 ~a~~L~~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
+|++|+++||||+|||.|... +.++.|++||++||+ ++++|||||+||||+||||++
T Consensus 85 ~G~~l~t~~VIHtVGP~~~~~-~~~~~L~~~y~~~L~----~~~~SIAfPaIstGi~g~P~~ 141 (176)
T 3ejf_A 85 PSFVKGIQCVNNVVGPRHGDN-NLHEKLVAAYKNVLV----DGVVNYVVPVLSLGIFGVDFK 141 (176)
T ss_dssp CCCSTTEEEEEEECCCCTTCS-CHHHHHHHHHHTTCC----TTCCEEEEECCCTTSTTCCHH
T ss_pred ccccccCCEEEEeCCCCCCCc-cHHHHHHHHHHHHHH----cCCcEEEECccccCCCCCCHH
Confidence 999999999999999999653 567899999999998 999999999999999999975
No 12
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=100.00 E-value=2.6e-36 Score=247.98 Aligned_cols=118 Identities=27% Similarity=0.450 Sum_probs=108.0
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCC
Q 028011 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (215)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~ 159 (215)
+++|.+|+||||++++ |||||+||+.|.+++||+++|++++|++++ .+.+++|++++|++ +|
T Consensus 3 ~~~i~v~~GDIt~~~v----DAIVNaAN~~l~~ggGV~~aI~~aaG~~l~-----------~~~~~~G~a~iT~~---~~ 64 (168)
T 3gqe_A 3 APSYHVVRGDIATATE----GVIINAANSKGQPGGGVCGALYKKFPESFD-----------LQPIEVGKARLVKG---AA 64 (168)
T ss_dssp CCEEEEEESCGGGCCS----SEEEEEECTTSCCTTGGGSHHHHHCGGGCC-----------CCCCCTTCEEEECC---TT
T ss_pred CCeEEEEeCcccCccc----CEEEeCCCcccCCCccHHHHHHHHhhHHhc-----------CCCcCCCcEEEEcC---CC
Confidence 5799999999999876 999999999999999999999999999753 24899999999998 49
Q ss_pred ceEEEEecccccCCCC--hHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCCC
Q 028011 160 SHVIHTVGPIYDADSN--PEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFLT 215 (215)
Q Consensus 160 k~IIHaVgP~~~~~~~--~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~t 215 (215)
|||||+|||.|+.... +.+.|++||++||++|.+++++|||||+||||+||||++.
T Consensus 65 k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~ 122 (168)
T 3gqe_A 65 KHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDR 122 (168)
T ss_dssp CCEEEEECCCTTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCC
T ss_pred CEEEEcCCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHH
Confidence 9999999999987652 3578999999999999999999999999999999999874
No 13
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=100.00 E-value=1.1e-36 Score=258.25 Aligned_cols=127 Identities=35% Similarity=0.500 Sum_probs=117.2
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhC----hHHHHHHhhCCccCCCcc--cCCCcEEEcc
Q 028011 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAG----PELREACCKVPEVRPEVR--CPIGEARITP 153 (215)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG----~~L~~e~~~~~~~~~~~~--l~~G~~~iT~ 153 (215)
+.+|++++||||++++ |||||+||+.+.+++||++||++++| ++|+++|+++++.. +. +++|++++|+
T Consensus 20 ~~~i~i~~GDIt~~~v----DaIVNaaN~~l~~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~~--g~~~~~~G~a~iT~ 93 (211)
T 1vhu_A 20 DITLKLAQGDITQYPA----KAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQF--GRDYIDHGEVVVTP 93 (211)
T ss_dssp TEEEEEEESCGGGSCC----SEEEEEECTTCCCCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHH--SSSCCCTTCCEEEE
T ss_pred CEEEEEEecccCcCCC----CEEEECCCccccCccHHHHHHHHHhCCCchHHHHHHHHHHHHHc--CCCcccCCcEEEEE
Confidence 5799999999999976 99999999999999999999999999 99999999876432 24 9999999999
Q ss_pred CCCCCC---ceEEEEecc----cccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 154 GFKLPA---SHVIHTVGP----IYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 154 a~~L~~---k~IIHaVgP----~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
+|+||| |||||+||| .|.. ...+.|++||++||++|.+++++|||||+||||+||||++
T Consensus 94 ~~~L~~~g~k~VIH~vgP~~~~~~~~--~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~ 159 (211)
T 1vhu_A 94 AMNLEERGIKYVFHTVGPICSGMWSE--ELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLE 159 (211)
T ss_dssp CGGGGGGTCCEEEEEECCCCTTCCCH--HHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHH
T ss_pred CCCCCccCcCEEEEecCCccccccCc--chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHH
Confidence 999999 999999999 8853 5678999999999999999999999999999999999975
No 14
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=100.00 E-value=5.7e-36 Score=245.90 Aligned_cols=118 Identities=25% Similarity=0.331 Sum_probs=106.8
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCC
Q 028011 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (215)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~ 159 (215)
.+...||+||||++++ |||||+||+.|.+++||++||++++|++++ .+.+++|++++|+++ |
T Consensus 9 ~~~~~~~~GDIt~~~v----DAIVNaAN~~l~~ggGV~~aI~~aaG~~l~-----------~~~~~~G~a~iT~~~---~ 70 (168)
T 3gpg_A 9 APSYRVKRMDIAKNDE----ECVVNAANPRGLPGDGVCKAVYKKWPESFK-----------NSATPVGTAKTVMCG---T 70 (168)
T ss_dssp CCCC-CEESCGGGCCS----SCEEEECCTTCCCCSHHHHHHHHHCGGGGT-----------TCCCCTTCEEEEEET---T
T ss_pred CCceEEEeCcCCcccC----CEEEeCCCcccCCCchHHHHHHHHhhHHhh-----------cCCCCCCCEEEecCC---C
Confidence 5678899999999976 999999999999999999999999999763 248999999999994 9
Q ss_pred ceEEEEecccccCCCC--hHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCCC
Q 028011 160 SHVIHTVGPIYDADSN--PEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFLT 215 (215)
Q Consensus 160 k~IIHaVgP~~~~~~~--~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~t 215 (215)
|||||+|||.|+.+.. +.+.|++||++||++|++++++|||||+||||+||||++.
T Consensus 71 k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~ 128 (168)
T 3gpg_A 71 YPVIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDR 128 (168)
T ss_dssp EEEEEECCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCC
T ss_pred CEEEEeCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHH
Confidence 9999999999988653 3578999999999999999999999999999999999874
No 15
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=100.00 E-value=6e-36 Score=263.62 Aligned_cols=173 Identities=18% Similarity=0.132 Sum_probs=130.5
Q ss_pred hHHHHHHhcCCCCCCCCcCCCCCCccceeechhhHHHHhhhcccccCCCCcceeeccccccccCCCCCCCceeecCCCce
Q 028011 3 TRRLIRFLLPATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESAA 82 (215)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~f~~~~~~~ 82 (215)
||.+-|+-|=|++. +. ...+...|+++++.|.++.... ++. .+.+
T Consensus 2 ~~~~~~~~l~n~~~------~m-~i~l~d~~~~~v~a~~~~~~~~---------------------------~~~-~~~~ 46 (284)
T 1njr_A 2 TGSLNRHSLLNGVK------KM-RIILCDTNEVVTNLWQESIPHA---------------------------YIQ-NDKY 46 (284)
T ss_dssp --------------------CC-EEEEEESCHHHHHHHHHHCC-----------------------------------CC
T ss_pred CCCcchhHhhcCcc------cc-eEEEECCCHHHHHHHHHHhhhh---------------------------cCC-CCCE
Confidence 45555555546665 11 3458889999999999774420 011 1468
Q ss_pred EEEEECcccee--------c-cCCCCcEEEEcCCCCCCCCCcHHHHHHHHhC-hHHHHHHhhCCccCCCcccCCCcEEEc
Q 028011 83 LVINKGDITKW--------S-VDGSSDAIVNPANERMLGGGGADGAIHRAAG-PELREACCKVPEVRPEVRCPIGEARIT 152 (215)
Q Consensus 83 I~I~~GDIt~~--------~-vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG-~~L~~e~~~~~~~~~~~~l~~G~~~iT 152 (215)
|.|++||||++ . +++++||||||||+.+.++|||++||++++| +.++++|+++++ .+.+++|++++|
T Consensus 47 i~i~~GDIt~l~~~~~~~~~~~~~~vDAIVNaANs~l~~gGGVd~AI~raaGg~~l~~ec~~~~~---~g~~~~G~a~iT 123 (284)
T 1njr_A 47 LCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGYLGGGFDKALYNYFGGKPFETWFRNQLG---GRYHTVGSATVV 123 (284)
T ss_dssp EEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCCCCSSHHHHHHHHHTSHHHHHHHHHHTT---TSCCCTTCCEEE
T ss_pred EEEEeCCHhhhhhhccccccccCCCccEEEeCCCCCCCCCchHHHHHHHhhCcHHHHHHHHHHHh---cCCCCCCeEEEE
Confidence 99999999999 0 1123499999999999999999999999975 788999998763 247999999999
Q ss_pred cCC----------CCCCceEEEEecccccCCC---------ChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccC
Q 028011 153 PGF----------KLPASHVIHTVGPIYDADS---------NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLF 213 (215)
Q Consensus 153 ~a~----------~L~~k~IIHaVgP~~~~~~---------~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~ 213 (215)
+++ +||||||||+|||.|.... ...+.|++||+++|+.| +++++|||||+||||+||||+
T Consensus 124 ~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~~~p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv~G~P~ 202 (284)
T 1njr_A 124 DLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGYAGVPP 202 (284)
T ss_dssp EGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCTTCHHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCSTTCCCH
T ss_pred ECCcccccccchhcCCCCEEEEeCCCccCCCCCcccccccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccCCCCCH
Confidence 999 9999999999999997652 13589999999999999 999999999999999999997
Q ss_pred C
Q 028011 214 L 214 (215)
Q Consensus 214 ~ 214 (215)
+
T Consensus 203 ~ 203 (284)
T 1njr_A 203 I 203 (284)
T ss_dssp H
T ss_pred H
Confidence 5
No 16
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=100.00 E-value=3.3e-36 Score=250.20 Aligned_cols=125 Identities=26% Similarity=0.390 Sum_probs=110.1
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCC
Q 028011 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (215)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~ 159 (215)
+.+|+||+||||++..+.++|||||+||+.|.+++||++||++++|++|++||+++++. .+++++|++++|++|+|+
T Consensus 19 ~~~i~i~~GDIt~~~~~~~vDAIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~~~~L~- 95 (182)
T 2acf_A 19 TDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL--NGPLTVGGSCLLSGHNLA- 95 (182)
T ss_dssp SSSEEEEESCHHHHHHHHCCSEEEEECCTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHH--HCCCCTTCEEEEECTTTC-
T ss_pred CCeEEEEeCcccccccCCCCCEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHHH--cCCCCCCcEEEeeCCCCC-
Confidence 67999999999999211123999999999999999999999999999999999987643 248999999999999996
Q ss_pred ceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 160 SHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 160 k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
+||||+|||.|+.+ ...+.|++||+++ ++++|||||+||||+||||++
T Consensus 96 ~~VIH~vgP~~~~~-~~~~~L~~~y~~~------~~~~SIAfP~IstGi~G~p~~ 143 (182)
T 2acf_A 96 KKCLHVVGPNLNAG-EDIQLLKAAYENF------NSQDILLAPLLSAGIFGAKPL 143 (182)
T ss_dssp SEEEEECCCCGGGT-CCTTHHHHHHHGG------GGSSEEEECCTTCGGGCCCHH
T ss_pred ceEEEECCCCCCCC-chHHHHHHHHHHh------cCCCEEEECCcccCCCCCCHH
Confidence 79999999999865 3567999999996 789999999999999999975
No 17
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=100.00 E-value=1.2e-35 Score=248.73 Aligned_cols=123 Identities=21% Similarity=0.276 Sum_probs=108.3
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCC
Q 028011 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (215)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~ 159 (215)
+.+|.+|+||||++..+.++|||||+||+.|.+++||++||++++|++|++||+++++.+ ++|++|++++|++|+|
T Consensus 37 ~~~i~l~~GDIt~~~~~~~vDAIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~l~~~~--g~~~~G~a~iT~~~~L-- 112 (193)
T 3ejg_A 37 HDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLA--GKVKVGTGVMVECDSL-- 112 (193)
T ss_dssp ETTEEEEECCHHHHHHHCCCSEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHHH--CSCCTTCEEEEEETTE--
T ss_pred CCeEEEEeCcccccCcCCCcCEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHHc--CCCCCCCEEEecCCCe--
Confidence 579999999999931011349999999999999999999999999999999999886432 3899999999999999
Q ss_pred ceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 160 SHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 160 k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
||||+|||.|.. .+.+.|++||++||+. .+|||||+||||+||||++
T Consensus 113 -~VIHtVGP~~~~--~~~~~L~~~y~~~L~~-----~~SIAfPaIstGi~G~P~~ 159 (193)
T 3ejg_A 113 -RIFNVVGPRKGK--HERDLLIKAYNTINNE-----QGTPLTPILSCGIFGIKLE 159 (193)
T ss_dssp -EEEEEECCCSST--THHHHHHHHHHHHHHS-----SSCEEECCTTCGGGCCCHH
T ss_pred -eEEEecCCCCCc--hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHH
Confidence 999999999965 5778999999999973 3799999999999999975
No 18
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=100.00 E-value=3.2e-35 Score=242.50 Aligned_cols=133 Identities=24% Similarity=0.279 Sum_probs=114.7
Q ss_pred CCCCCceeecCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCC
Q 028011 68 QRSEDGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIG 147 (215)
Q Consensus 68 ~~~~~~~f~~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G 147 (215)
+.+...+|.. +.+|.+++||||++..+.++|||||+||++|.+++||++||++++|++|++||+++++. .+.+++|
T Consensus 6 ~~~~~~pf~~--~~~i~i~~GDIt~~~~~~~~DaIVNaaN~~l~~ggGv~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G 81 (174)
T 2vri_A 6 AAPFTKPFAV--YKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISS--NGPLKVG 81 (174)
T ss_dssp TTEECCCSEE--ETTEEEEESCHHHHTTTSCCSEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHH--HCSCCTT
T ss_pred CCCcCCccCC--CCeEEEEeccccccccCCCccEEEECCCccCCCCCcHhHHHHHHhhHHHHHHHHHHHHh--cCCCCCC
Confidence 4455666766 57899999999998322245999999999999999999999999999999999987642 2489999
Q ss_pred cEEEccCCCCCCceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 148 EARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 148 ~~~iT~a~~L~~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
++++|++++| ||||+|||.|... ..+.|++||++||++ .+|||||+||||+||||++
T Consensus 82 ~a~iT~~~~l---~VIH~vgP~~~~~--~~~~L~~~y~~~L~~-----~~SIAfP~IstG~~g~p~~ 138 (174)
T 2vri_A 82 AGVMLECEKF---NVFNVVGPRTGKH--EHSLLVEAYNSILFE-----NGIPLMPLLSCGIFGVRIE 138 (174)
T ss_dssp CEEEEECSSC---EEEEEECCCSSTT--HHHHHHHHHHHHHHS-----SSCEEEECSSCGGGCCCHH
T ss_pred eEEEEECCCC---EEEEEcCCCCCcc--hHHHHHHHHHHHHhh-----CCcEEeCccccCCCCCCHH
Confidence 9999999998 9999999999642 678999999999984 3599999999999999975
No 19
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=99.97 E-value=4.9e-32 Score=253.89 Aligned_cols=117 Identities=26% Similarity=0.355 Sum_probs=108.2
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCC
Q 028011 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (215)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~ 159 (215)
-+.++|++||||+.++ |||||+||+.+.+|+||++|||+++|+++.+ +.+++|++++|+++ .
T Consensus 343 APsfrIIRgDITk~~v----DAIVNAANtsL~gGgGVdGAIhraaG~~ll~-----------~~~~tG~AkIT~g~---a 404 (670)
T 4gua_A 343 APSYRTKRENIADCQE----EAVVNAANPLGRPGEGVCRAIYKRWPTSFTD-----------SATETGTARMTVCL---G 404 (670)
T ss_dssp CCCEEEECSCGGGCCS----SEEEEECCTTCCCCSSHHHHHHHHCGGGGTT-----------CCCCTTCEEEEEET---T
T ss_pred CcceeEEecccccccc----CEEEeCCCCCCCCcCCHhHHHHHHhhHHHhc-----------CCCCcceEEEecCC---C
Confidence 5799999999999976 9999999999999999999999999998764 26789999999998 5
Q ss_pred ceEEEEecccccCCCCh--HHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 160 SHVIHTVGPIYDADSNP--EASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 160 k~IIHaVgP~~~~~~~~--~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
|||||+|||.|+++.+. .++|++||+++|++|.+++++|||||+||||+||||++
T Consensus 405 KyIIHtVGPvw~~g~~~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~PKd 461 (670)
T 4gua_A 405 KKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKD 461 (670)
T ss_dssp EEEEEECCCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTTSC
T ss_pred ceEEEcCCCCccCCCCchHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCCHH
Confidence 99999999999987643 36899999999999999999999999999999999986
No 20
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=99.95 E-value=1.9e-27 Score=193.60 Aligned_cols=122 Identities=14% Similarity=0.170 Sum_probs=107.1
Q ss_pred cCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCC
Q 028011 77 LSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFK 156 (215)
Q Consensus 77 ~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~ 156 (215)
+.++.+|++++||||+.. .+|||||++|+++.+++||+++|++++|. + .+|++ +.+++|++++|+++
T Consensus 16 ~~~~~~i~~v~GDIt~~~---~~daIVnaaN~~~~~GgGVa~ai~~~~p~-~-~e~~~-------~~~~~G~a~it~~~- 82 (160)
T 2jyc_A 16 DPEGSRITYVKGDLFACP---KTDSLAHCISEDCRMGAGIAVLFKKKFGG-V-QELLN-------QQKKSGEVAVLKRD- 82 (160)
T ss_dssp CCCSCSEEEEESCSSSSC---SSCEEEEEECTTCCCCSSTHHHHHHHHCC-H-HHHHH-------HCCCTTCEEEEEET-
T ss_pred cCCCceEEEEeCcCCCCC---CCCEEEEccCCcCCCCCcHHHHHHHHChH-H-HHHhc-------cCCCCCcEEEEecC-
Confidence 344779999999999875 14999999999999999999999999955 4 57865 27899999999985
Q ss_pred CCCceEEEEeccc-ccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 157 LPASHVIHTVGPI-YDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 157 L~~k~IIHaVgP~-~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
.+||||++||. |.. ....+.|++||+++++.|.+++++|||||.||||++|||.+
T Consensus 83 --~~~Vih~vg~~~~~~-~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p~~ 138 (160)
T 2jyc_A 83 --GRYIYYLITKKRASH-KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWE 138 (160)
T ss_dssp --TEEEEEEECSSSTTS-CCCHHHHHHHHHHHHHHHHHHTCCEEEEESCCSSCSSSCHH
T ss_pred --CcEEEEEecCCCCCC-CChHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHH
Confidence 69999999998 654 45578999999999999999999999999999999999964
No 21
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=99.95 E-value=1.2e-27 Score=192.24 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=105.1
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCC
Q 028011 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (215)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~ 159 (215)
+.+|++++||||+.. .+|||||++|+++.|++||+++|+++++ ++ ++|++ +.+++|++++|+++ +
T Consensus 8 ~~~i~~v~GDIt~~~---~~daIVnaaN~~~~~G~Gva~ai~~~~p-~~-~~~~~-------~~~~~G~a~it~~~---~ 72 (149)
T 2eee_A 8 GSRITYVKGDLFACP---KTDSLAHCISEDCRMGAGIAVLFKKKFG-GV-QELLN-------QQKKSGEVAVLKRD---G 72 (149)
T ss_dssp SCCCEEECSCSSSSC---SSCEEEEEEETTCCCCSTTHHHHHHHTC-CH-HHHHT-------TCCCTTCEEEEESS---S
T ss_pred CeeEEEEecccccCC---CCcEEEEEeCCCCCcCCcHHHHHHHHCc-HH-HHHhc-------ccCCCccEEEEEcC---C
Confidence 568999999999975 1499999999999999999999999995 45 57764 27899999999985 6
Q ss_pred ceEEEEeccc-ccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 160 SHVIHTVGPI-YDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 160 k~IIHaVgP~-~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
+||||+++|. |.. ....+.|++||+++++.|.+++++|||||.||||++|||.+
T Consensus 73 ~~Vih~v~~~~~~~-~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~ 127 (149)
T 2eee_A 73 RYIYYLITKKRASH-KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWE 127 (149)
T ss_dssp SEEEEEEEESSTTS-CCCHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHH
T ss_pred CEEEEEEecCCCCC-CCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHH
Confidence 9999999998 654 44578999999999999999999999999999999999964
No 22
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=99.93 E-value=6.9e-26 Score=183.45 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=105.3
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCCCCce
Q 028011 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASH 161 (215)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L~~k~ 161 (215)
.|++++||||+... .++|||||++|+.+.+++||+++|++++ +++.++|++..+. .+.+++|++.+|+++ +.+|
T Consensus 5 ~i~~v~GDit~~~~-~~~daIvn~~N~~~~~G~Gva~ai~~~~-p~~~~~~~~~~~~--~~~~~~G~~~i~~~~--~~~~ 78 (158)
T 2fg1_A 5 EILYIKGDATAPIG-SGVKVITHICNDIGGWGKGFVLALSKKW-KMPEEAYRQWYKS--QEEFTLGAVQFVNVE--NKLY 78 (158)
T ss_dssp CCEEEESCTTSCCS-SSCEEEEEEEETTCCCCSTHHHHHHHHC-SHHHHHHHHHHHH--TSSCSTTCEEEEEEE--TTEE
T ss_pred EEEEEecccCCCCC-CCCeEEEEEecCCCCcCccHHHHHHHHC-ChHHHHHHHHHhh--ccCcCCccEEEEecC--CCeE
Confidence 68899999998211 1349999999999999999999999999 7888777654432 237899999999984 2499
Q ss_pred EEEEeccc-ccCCC-C----hHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 162 VIHTVGPI-YDADS-N----PEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 162 IIHaVgP~-~~~~~-~----~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
|||+++|. |.... . ..+.|++||+++++.|.+++. |||||.||||++|+|.+
T Consensus 79 Vi~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~ 136 (158)
T 2fg1_A 79 VANMIGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHKA-SVHMPRIGCGLAGGKWE 136 (158)
T ss_dssp EEEEEEESSSSCCTTCCCSBCHHHHHHHHHHHHHHHHHHTC-EEEECCTTCSTTCCCHH
T ss_pred EEEEEEEcccCCCCCCCccccHHHHHHHHHHHHHHHHHhCC-eEEecCcCCCCCCCCHH
Confidence 99999998 76433 1 578999999999999999997 99999999999999964
No 23
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=97.63 E-value=2.5e-05 Score=68.25 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=45.2
Q ss_pred EEEEecccccCCC------ChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011 162 VIHTVGPIYDADS------NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL 214 (215)
Q Consensus 162 IIHaVgP~~~~~~------~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~ 214 (215)
||.++.|+|..-. ...+.|+..|+++|..|.++|.++|+||++|||+||.|++
T Consensus 172 vit~aApn~~~~~~~~~~~~~~~~l~~rir~vL~iA~~~g~~~LVLGA~GCGvfgnpp~ 230 (277)
T 3sig_A 172 FLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPA 230 (277)
T ss_dssp EEEECCCCHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHH
T ss_pred EEEecCCCCccccCccchHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCcCCCCHH
Confidence 7888888774311 1247899999999999999999999999999999999975
No 24
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=70.70 E-value=0.45 Score=30.39 Aligned_cols=35 Identities=14% Similarity=0.397 Sum_probs=31.1
Q ss_pred CCCCCCCCcCCCCCCccceeechhhHHHHhhhccc
Q 028011 12 PATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTI 46 (215)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 46 (215)
|-..||..+|++.|+-+=..+|.|.|..|.+++..
T Consensus 8 p~~~lP~~VD~eVF~~LP~dIQ~Ells~~~~e~~~ 42 (48)
T 2kwv_A 8 PLQALPEGVDQEVFKQLPADIQEEILSGKSRENLK 42 (48)
T ss_dssp CTTSSCTTCCGGGTTTSCHHHHHHHTTCCCSCCCC
T ss_pred ccccCCCCCCHHHHHHCcHHHHHHHHhcchHHhhc
Confidence 56689999999999999999999999999988554
No 25
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=51.44 E-value=15 Score=28.64 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=26.3
Q ss_pred CceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEEC
Q 028011 159 ASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFT 202 (215)
Q Consensus 159 ~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP 202 (215)
++.|||++++.|.... ..+.-.....++++.|.+.+++.+.+-
T Consensus 68 ~d~vi~~a~~~~~~~~-~~~~n~~~~~~l~~~~~~~~~~~~v~~ 110 (227)
T 3dhn_A 68 ADAVISAFNPGWNNPD-IYDETIKVYLTIIDGVKKAGVNRFLMV 110 (227)
T ss_dssp CSEEEECCCC-------CCSHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCEEEEeCcCCCCChh-HHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 5789999998765432 111223456778888888898887773
No 26
>2khu_A Immunoglobulin G-binding protein G, DNA polymerase IOTA; UBM, ubiquitin-binding domain, translesion synthesis, TLS, ubiquitin-binding protein; NMR {Streptococcus SP} PDB: 2khw_A 2l0f_B*
Probab=48.79 E-value=3.3 Score=30.58 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=28.8
Q ss_pred CCCCCCCcCCCCCCccceeechhhHHHHhhhcc
Q 028011 13 ATQLPQATNSSTFPKSRTSVSDNSLATRAKAKT 45 (215)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 45 (215)
...+|..+|...|.++-..+|.|.|+.|++...
T Consensus 61 ~i~~Ps~VDP~VFyeLP~eVQ~ELla~Wr~~~~ 93 (108)
T 2khu_A 61 KITFPSDIDPQVFYELPEAVQKELLAEWKRTGS 93 (108)
T ss_dssp CCCCCTTCCHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCCCHHHHHHccHHHHHHHHHHHHHhCC
Confidence 456799999999999999999999999997743
No 27
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=31.26 E-value=44 Score=25.73 Aligned_cols=41 Identities=7% Similarity=0.124 Sum_probs=28.6
Q ss_pred CceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEEC
Q 028011 159 ASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFT 202 (215)
Q Consensus 159 ~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP 202 (215)
++.|||++|+.|.... ...-....+++++.|.+.+ +.+.+.
T Consensus 63 ~d~vi~~ag~~~~~~~--~~~n~~~~~~l~~a~~~~~-~~~v~~ 103 (224)
T 3h2s_A 63 VDAVVDALSVPWGSGR--GYLHLDFATHLVSLLRNSD-TLAVFI 103 (224)
T ss_dssp CSEEEECCCCCTTSSC--THHHHHHHHHHHHTCTTCC-CEEEEE
T ss_pred CCEEEECCccCCCcch--hhHHHHHHHHHHHHHHHcC-CcEEEE
Confidence 5789999999875432 2234445678888888888 666664
No 28
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=24.49 E-value=70 Score=24.30 Aligned_cols=46 Identities=11% Similarity=0.071 Sum_probs=28.9
Q ss_pred CceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccC
Q 028011 159 ASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGV 208 (215)
Q Consensus 159 ~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~ 208 (215)
++.|||++|+.... ...-....+++++.+.+.+.+.+.+..=..+.
T Consensus 62 ~d~vi~~ag~~~~~----~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~ 107 (221)
T 3ew7_A 62 QNVVVDAYGISPDE----AEKHVTSLDHLISVLNGTVSPRLLVVGGAASL 107 (221)
T ss_dssp CSEEEECCCSSTTT----TTSHHHHHHHHHHHHCSCCSSEEEEECCCC--
T ss_pred CCEEEECCcCCccc----cchHHHHHHHHHHHHHhcCCceEEEEecceEE
Confidence 57899999885322 11234566778888888878888775433333
No 29
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=24.30 E-value=1.3e+02 Score=24.43 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=32.0
Q ss_pred CCceEEEEecccccCCC-ChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCC
Q 028011 158 PASHVIHTVGPIYDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYG 210 (215)
Q Consensus 158 ~~k~IIHaVgP~~~~~~-~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g 210 (215)
.++.|||++++...... ...+.=....+++++.|.+.+++.+.+.. +++++|
T Consensus 62 ~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~S-S~~vyg 114 (311)
T 3m2p_A 62 DVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYAS-TISAYS 114 (311)
T ss_dssp TCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEE-EGGGCC
T ss_pred CCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc-cHHHhC
Confidence 46899999987543211 11222234567888888899999877733 234444
No 30
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Probab=23.86 E-value=1.3e+02 Score=24.66 Aligned_cols=52 Identities=15% Similarity=0.235 Sum_probs=29.1
Q ss_pred CceEEEEecccccCCCChH-HHH---HHHHHHHHHHHHHCC-CcEEEECcccccCCC
Q 028011 159 ASHVIHTVGPIYDADSNPE-ASL---RNAYKNSLSVAKENN-IQYIAFTAISCGVYG 210 (215)
Q Consensus 159 ~k~IIHaVgP~~~~~~~~~-~~L---~~~y~~~L~~a~~~~-ikSIAfP~IgTG~~g 210 (215)
++.|||+++|.-....+.. ..+ -....++++.|.+.+ ++.|.+-.=..+.++
T Consensus 78 ~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~ 134 (337)
T 2c29_D 78 CTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNI 134 (337)
T ss_dssp CSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSC
T ss_pred CCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhccc
Confidence 5789999987521111222 122 234567777777766 788877443333443
No 31
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=23.16 E-value=1.4e+02 Score=24.85 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=26.9
Q ss_pred CCceEEEEecccccCCCChHHHHH---HHHHHHHHHHHHCCCcEEEE
Q 028011 158 PASHVIHTVGPIYDADSNPEASLR---NAYKNSLSVAKENNIQYIAF 201 (215)
Q Consensus 158 ~~k~IIHaVgP~~~~~~~~~~~L~---~~y~~~L~~a~~~~ikSIAf 201 (215)
.++.|||++++.-....+....+. ....++++.|.+.+.+ |.+
T Consensus 90 ~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~ 135 (362)
T 3sxp_A 90 HFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIY 135 (362)
T ss_dssp CCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEE
T ss_pred CCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEE
Confidence 468999999854221122233333 4566788888888887 554
No 32
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=20.73 E-value=25 Score=28.49 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=26.7
Q ss_pred CCceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEEC
Q 028011 158 PASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFT 202 (215)
Q Consensus 158 ~~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP 202 (215)
.++.|||++++.........+.-.....++++.|.+.+++.+.+.
T Consensus 63 ~~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~ 107 (286)
T 3gpi_A 63 RPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFV 107 (286)
T ss_dssp CCSEEEECHHHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 378999999875422111111112345677777777888887773
No 33
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=20.67 E-value=81 Score=27.84 Aligned_cols=40 Identities=15% Similarity=0.046 Sum_probs=27.9
Q ss_pred ceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHH
Q 028011 81 AALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAI 120 (215)
Q Consensus 81 ~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI 120 (215)
.+|.+++||++++....++|+||.-.-..+....++-..+
T Consensus 132 ~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l~~e~~l~~~ 171 (376)
T 4hc4_A 132 DRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHESMLSSV 171 (376)
T ss_dssp TTEEEEESCTTTCCCSSCEEEEECCCCBTTBTTTCSHHHH
T ss_pred ceEEEEeeeeeeecCCccccEEEeecccccccccchhhhH
Confidence 5799999999988766688999985544444444433333
Done!