Query 028013
Match_columns 215
No_of_seqs 149 out of 613
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 07:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9p_A Pheromone alpha factor 33.1 28 0.00097 23.5 2.5 23 188-212 40-62 (80)
2 1m45_B IQ2, IQ2 motif from MYO 17.0 64 0.0022 16.5 1.4 19 6-24 1-19 (26)
3 3t98_A Nuclear pore complex pr 10.5 2.2E+02 0.0075 17.4 2.7 23 2-24 14-36 (51)
4 2lx0_A Membrane fusion protein 8.9 2.7E+02 0.0094 14.7 2.7 18 196-213 2-19 (32)
5 3fga_D Shugoshin-like 1; PP2A, 8.4 1.6E+02 0.0056 17.6 1.5 15 8-22 2-16 (47)
6 1ug7_A 2610208M17RIK protein; 7.5 2.7E+02 0.0094 20.3 2.6 40 6-45 34-77 (128)
7 2ls4_A High affinity copper up 8.2 1.2E+02 0.0041 15.9 0.0 12 120-131 10-21 (26)
8 1bin_A Leghemoglobin A; heme, 5.5 7.7E+02 0.027 16.8 7.5 19 1-19 1-19 (143)
9 1lbu_A Muramoyl-pentapeptide c 5.3 3.1E+02 0.011 21.1 2.1 16 3-18 42-57 (213)
10 1td6_A F10_ORF294, hypothetica 5.3 1.2E+03 0.042 19.0 5.7 41 26-69 82-122 (306)
No 1
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=33.07 E-value=28 Score=23.52 Aligned_cols=23 Identities=17% Similarity=0.611 Sum_probs=17.9
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHHH
Q 028013 188 WYLDTAGMKRSTTYLVNGVIIFFAW 212 (215)
Q Consensus 188 w~L~~~G~~~s~~y~iNg~l~~~tF 212 (215)
|++.| .++|+++.+|+..+++..
T Consensus 40 ~lltk--krrspiF~lN~~~L~l~i 62 (80)
T 2k9p_A 40 WITSR--SRKTPIFIINQVSLFLII 62 (80)
T ss_dssp HHHTC--CSCCCHHHHHHHHHHHHH
T ss_pred HHHhc--cccChhhHHHHHHHHHHH
Confidence 55544 678999999999887754
No 2
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=17.04 E-value=64 Score=16.46 Aligned_cols=19 Identities=32% Similarity=0.294 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 028013 6 QTVTAIKSYQNQAQVLVKN 24 (215)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (215)
|.-.|||-.||+...++-+
T Consensus 1 qisqaikylqnnikgfiir 19 (26)
T 1m45_B 1 QISQAIKYLQNNIKGFIIR 19 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHhccceEEEe
Confidence 3457899999998877654
No 3
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=10.55 E-value=2.2e+02 Score=17.38 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=17.8
Q ss_pred CcchhhHHHHHHHHHHHHHHhhh
Q 028013 2 AMSEQTVTAIKSYQNQAQVLVKN 24 (215)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (215)
.+.+++...||.|+.|-++=.+.
T Consensus 14 ~lD~~~~~eik~~L~~QQ~g~~~ 36 (51)
T 3t98_A 14 YIDADLLREIKQHLKQQQEGLSH 36 (51)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999988765544
No 4
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=8.87 E-value=2.7e+02 Score=14.74 Aligned_cols=18 Identities=17% Similarity=0.482 Sum_probs=13.8
Q ss_pred CCChhHHHHHHHHHHHHh
Q 028013 196 KRSTTYLVNGVIIFFAWL 213 (215)
Q Consensus 196 ~~s~~y~iNg~l~~~tFf 213 (215)
+++.+-.+.|+.-++||+
T Consensus 2 khtiweviaglvalltfl 19 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLTFL 19 (32)
T ss_dssp CSSSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 456677888888888875
No 5
>3fga_D Shugoshin-like 1; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens}
Probab=8.40 E-value=1.6e+02 Score=17.57 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHh
Q 028013 8 VTAIKSYQNQAQVLV 22 (215)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (215)
-|.+|+||.+-....
T Consensus 2 st~LK~~Q~NNr~La 16 (47)
T 3fga_D 2 STLLKNYQDNNKMLV 16 (47)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhhHHHH
Confidence 467888887655443
No 6
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=7.48 E-value=2.7e+02 Score=20.31 Aligned_cols=40 Identities=28% Similarity=0.339 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhccC--CC-Cchh-HHHHHHHHHHH
Q 028013 6 QTVTAIKSYQNQAQVLVKNYIIA--DP-FIPY-TSILAGLLACK 45 (215)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~--~~-~l~~-~~i~~s~~~~~ 45 (215)
|-+.|+++||+-+......-.-+ ++ +-.- ..+++-++.|.
T Consensus 34 QvvEA~deY~~La~~lkk~~~s~~~~~~fte~qkk~i~KiatcL 77 (128)
T 1ug7_A 34 QLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCL 77 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH
Confidence 67899999999887777766433 22 2222 44555666554
No 7
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=8.21 E-value=1.2e+02 Score=15.86 Aligned_cols=12 Identities=42% Similarity=0.833 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHH
Q 028013 120 GLGVSVGYFLAD 131 (215)
Q Consensus 120 ~~~is~GYFi~D 131 (215)
++.-.+|||+++
T Consensus 10 vlGa~~Gyf~F~ 21 (26)
T 2ls4_A 10 AAGAGTGYFLFS 21 (26)
Confidence 345567888874
No 8
>1bin_A Leghemoglobin A; heme, nitrogen fixation, multigene family, oxygen transport; HET: HEM; 2.20A {Glycine max} SCOP: a.1.1.2 PDB: 1fsl_A*
Probab=5.45 E-value=7.7e+02 Score=16.82 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=12.7
Q ss_pred CCcchhhHHHHHHHHHHHH
Q 028013 1 MAMSEQTVTAIKSYQNQAQ 19 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (215)
|.+|++....||.--..+.
T Consensus 1 m~lt~~~~~~v~~sw~~v~ 19 (143)
T 1bin_A 1 VAFTEKQDALVSSSFEAFK 19 (143)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 6788888777765544443
No 9
>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1
Probab=5.30 E-value=3.1e+02 Score=21.06 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=12.9
Q ss_pred cchhhHHHHHHHHHHH
Q 028013 3 MSEQTVTAIKSYQNQA 18 (215)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (215)
..++|..|+|.+|+..
T Consensus 42 fg~~t~~AV~~FQ~~~ 57 (213)
T 1lbu_A 42 FGPATKAAVQRFQSAY 57 (213)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHc
Confidence 3578999999999853
No 10
>1td6_A F10_ORF294, hypothetical protein Mg237 homolog; alpha helical, structural genomics, PSI, protein structure initiative; 2.50A {Mycoplasma pneumoniae} SCOP: a.234.1.1
Probab=5.28 E-value=1.2e+03 Score=18.96 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=23.2
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHhHhhhhhhhcCCCcch
Q 028013 26 IIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQ 69 (215)
Q Consensus 26 ~~~~~~l~~~~i~~s~~~~~~i~~ls~~ls~~l~k~y~~L~~~~ 69 (215)
+++.|+++.+.+. + |-++.+.+++.+-..=+..+.+|++++
T Consensus 82 ELdtpYlp~~lv~--~-Fqsl~~~v~~~Lyene~~~lesL~~ee 122 (306)
T 1td6_A 82 ELAAPYLPKPLVS--F-FQSLLQLVNHDLLEQQNAALASLPAAK 122 (306)
T ss_dssp HTTCTTSCHHHHH--H-HHHHHHHHHHHHHHHHCGGGGGCCHHH
T ss_pred HhcCCcccHHHHH--H-HHHHHHHhhHHHHHhhHHHHhcCCHHH
Confidence 6899999998543 2 223446666665322224555555443
Done!