Query 028013
Match_columns 215
No_of_seqs 149 out of 613
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 07:26:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028013.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028013hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l6ja1 a.20.1.2 (A:29-105) Ge 22.5 17 0.0012 22.6 1.5 16 4-19 36-51 (77)
2 d1su3a1 a.20.1.2 (A:32-98) Fib 13.1 46 0.0033 19.9 1.8 14 5-18 27-40 (67)
3 d1ug7a_ a.24.24.1 (A:) Domain 10.8 80 0.0058 21.2 2.6 41 6-46 34-78 (128)
4 d1lbua1 a.20.1.1 (A:1-83) Zn2+ 9.5 74 0.0054 19.3 2.0 16 4-19 43-58 (83)
5 d1slma1 a.20.1.2 (A:16-80) Str 8.7 88 0.0064 18.4 2.0 14 5-18 26-39 (65)
6 d1i11a_ a.21.1.1 (A:) Sox-5 {M 6.6 1.2E+02 0.0091 17.4 2.0 23 54-76 33-55 (70)
7 d2lefa_ a.21.1.1 (A:) Lymphoid 6.5 1E+02 0.0073 18.7 1.6 23 54-76 33-55 (86)
8 d1hsma_ a.21.1.1 (A:) High mob 6.4 99 0.0072 18.3 1.5 22 55-76 34-55 (79)
9 d1ckta_ a.21.1.1 (A:) High mob 6.3 99 0.0072 17.8 1.4 23 54-76 34-56 (71)
10 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 4.3 1.7E+02 0.012 17.4 1.6 23 54-76 33-55 (80)
No 1
>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.47 E-value=17 Score=22.61 Aligned_cols=16 Identities=25% Similarity=0.113 Sum_probs=10.9
Q ss_pred chhhHHHHHHHHHHHH
Q 028013 4 SEQTVTAIKSYQNQAQ 19 (215)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (215)
++++..|||.||+..-
T Consensus 36 ~~~~~~AIk~fQ~f~g 51 (77)
T d1l6ja1 36 SKSLGPALLLLQKQLS 51 (77)
T ss_dssp ---CHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcC
Confidence 4567899999998753
No 2
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.09 E-value=46 Score=19.88 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHH
Q 028013 5 EQTVTAIKSYQNQA 18 (215)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (215)
++...|||.+|+..
T Consensus 27 ~~~~~Aik~fQ~f~ 40 (67)
T d1su3a1 27 GPVVEKLKQMQEFF 40 (67)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 45678999999864
No 3
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.83 E-value=80 Score=21.23 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhccC---CCCc-hhHHHHHHHHHHHH
Q 028013 6 QTVTAIKSYQNQAQVLVKNYIIA---DPFI-PYTSILAGLLACKV 46 (215)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l-~~~~i~~s~~~~~~ 46 (215)
|-|.|++.||.-++.....-.-+ +|+- -..-+++-++.|.=
T Consensus 34 QLVEA~dEYq~lar~L~k~~~~q~~~~~FtEdqKK~l~kIAtCLe 78 (128)
T d1ug7a_ 34 QLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLE 78 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHHH
Confidence 77899999999999888776433 2222 23556667776654
No 4
>d1lbua1 a.20.1.1 (A:1-83) Zn2+ DD-carboxypeptidase, N-terminal domain {Streptomyces albus G [TaxId: 1962]}
Probab=9.54 E-value=74 Score=19.31 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=12.9
Q ss_pred chhhHHHHHHHHHHHH
Q 028013 4 SEQTVTAIKSYQNQAQ 19 (215)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (215)
.+.|..|+|.+|+...
T Consensus 43 g~~t~~AV~~FQ~~~g 58 (83)
T d1lbua1 43 GPATKAAVQRFQSAYG 58 (83)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 5789999999998653
No 5
>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}
Probab=8.67 E-value=88 Score=18.39 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHH
Q 028013 5 EQTVTAIKSYQNQA 18 (215)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (215)
++...|||.+|+..
T Consensus 26 ~~l~~Ai~~~Q~f~ 39 (65)
T d1slma1 26 GPVVKKIREMQKFL 39 (65)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 35677999998753
No 6
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.55 E-value=1.2e+02 Score=17.42 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=16.5
Q ss_pred hHhhhhhhhcCCCcchhhhhhhh
Q 028013 54 ISTFYFKAYNGLTKIQRMEWNNR 76 (215)
Q Consensus 54 ls~~l~k~y~~L~~~~k~~w~~r 76 (215)
+++.+...++.|+..+|..|...
T Consensus 33 isk~lg~~Wk~ls~~eK~~y~~~ 55 (70)
T d1i11a_ 33 ISKILGSRWKAMTNLEKQPYYEE 55 (70)
T ss_dssp HHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Confidence 44455578899999888777653
No 7
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.49 E-value=1e+02 Score=18.73 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=17.7
Q ss_pred hHhhhhhhhcCCCcchhhhhhhh
Q 028013 54 ISTFYFKAYNGLTKIQRMEWNNR 76 (215)
Q Consensus 54 ls~~l~k~y~~L~~~~k~~w~~r 76 (215)
+|..+...|+.|++.+|..|...
T Consensus 33 Isk~lg~~Wk~ls~~eK~~y~~~ 55 (86)
T d2lefa_ 33 INQILGRRWHALSREEQAKYYEL 55 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Confidence 44555678999999999888764
No 8
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=6.43 E-value=99 Score=18.28 Aligned_cols=22 Identities=5% Similarity=0.111 Sum_probs=15.8
Q ss_pred HhhhhhhhcCCCcchhhhhhhh
Q 028013 55 STFYFKAYNGLTKIQRMEWNNR 76 (215)
Q Consensus 55 s~~l~k~y~~L~~~~k~~w~~r 76 (215)
++.+.+.|+.|+..+|..|..+
T Consensus 34 ~k~~~~~W~~ls~~eK~~y~~~ 55 (79)
T d1hsma_ 34 AKKLGEMWNNTAADDKQPYEKK 55 (79)
T ss_dssp HHHHHHHHHTSCSTTTHHHHHH
T ss_pred HHHHhhHHhcCCHHHHHHHHHH
Confidence 3344568889998888877664
No 9
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.34 E-value=99 Score=17.81 Aligned_cols=23 Identities=4% Similarity=0.147 Sum_probs=16.2
Q ss_pred hHhhhhhhhcCCCcchhhhhhhh
Q 028013 54 ISTFYFKAYNGLTKIQRMEWNNR 76 (215)
Q Consensus 54 ls~~l~k~y~~L~~~~k~~w~~r 76 (215)
+++.+.+.++.|++.+|..|..+
T Consensus 34 i~k~~~~~Wk~ls~~eK~~y~~~ 56 (71)
T d1ckta_ 34 FSKKCSERWKTMSAKEKGKFEDM 56 (71)
T ss_dssp HHHHHHHHHHTCCTTTSHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455568889998888777653
No 10
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.33 E-value=1.7e+02 Score=17.40 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=17.0
Q ss_pred hHhhhhhhhcCCCcchhhhhhhh
Q 028013 54 ISTFYFKAYNGLTKIQRMEWNNR 76 (215)
Q Consensus 54 ls~~l~k~y~~L~~~~k~~w~~r 76 (215)
+|+.+...|+.|++++|..|..+
T Consensus 33 isk~~g~~W~~l~~eeK~~y~~~ 55 (80)
T d1gt0d_ 33 ISKRLGAEWKLLSETEKRPFIDE 55 (80)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCCHHHHHHHHHH
Confidence 45555678899999988877664
Done!