Query 028014
Match_columns 215
No_of_seqs 105 out of 419
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:57:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0440 Cell cycle-associated 100.0 3.7E-83 8.1E-88 547.2 20.0 205 9-215 37-242 (243)
2 KOG1903 Cell cycle-associated 100.0 7.5E-80 1.6E-84 506.6 17.3 207 7-213 10-217 (217)
3 PF03637 Mob1_phocein: Mob1/ph 100.0 1.5E-78 3.2E-83 507.3 18.4 175 29-205 1-175 (175)
4 KOG1852 Cell cycle-associated 100.0 8.5E-41 1.8E-45 275.1 8.2 182 15-204 26-210 (223)
5 KOG3261 Uncharacterized conser 31.7 37 0.00081 28.9 2.3 18 151-168 121-139 (202)
6 cd00397 DNA_BRE_C DNA breaking 28.7 1.9E+02 0.0042 21.5 5.8 32 126-157 84-115 (164)
7 PHA03074 late transcription fa 23.9 1E+02 0.0022 27.0 3.6 85 108-194 58-146 (225)
8 PF12387 Peptidase_C74: Pestiv 23.6 3.7E+02 0.0081 23.1 6.8 69 131-202 25-106 (200)
9 PF08945 Bclx_interact: Bcl-x 22.8 67 0.0015 20.8 1.7 30 43-72 6-35 (40)
10 PF15192 TMEM213: TMEM213 fami 22.8 57 0.0012 24.1 1.6 20 42-61 33-52 (82)
11 PF06798 PrkA: PrkA serine pro 22.0 2.6E+02 0.0056 24.8 5.9 72 141-214 167-240 (254)
12 PF12431 CitT: Transcriptional 20.5 82 0.0018 18.9 1.7 9 45-53 21-29 (30)
13 KOG2321 WD40 repeat protein [G 20.0 1.1E+02 0.0024 30.8 3.4 59 46-109 13-78 (703)
No 1
>KOG0440 consensus Cell cycle-associated protein Mob1-1 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.7e-83 Score=547.16 Aligned_cols=205 Identities=65% Similarity=1.117 Sum_probs=200.2
Q ss_pred CCCccCCCCCCCCCCccchHHHHHHHHhcC-CchhHhhcCCCCCCchhHHHHhHHHHHhhhhhhhhhhccccCCCCCCCC
Q 028014 9 NQRTFRPKKSAPSGSKGAQLRKHIDATLGS-GNLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTAENCPTM 87 (215)
Q Consensus 9 ~~~t~~p~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~V~lP~g~d~neWlA~h~~~f~~~in~l~~~~~e~CT~~tCP~M 87 (215)
..+++++++..++++.++++.++++++|++ |||+++|+||+|+|+|||||+|++|||++||+|||+|+|+||+++||.|
T Consensus 37 ~~~~~~~k~~~~~~s~~~~~~~~~e~~l~s~g~l~~aV~LP~G~D~nEWlA~nt~~fF~qvN~lYGtitEfCT~~sCp~M 116 (243)
T KOG0440|consen 37 AAKPFRKKEASASLSVRPQAKYLAEATLGSSGNLREAVKLPEGEDLNEWLAVNTLDFFNQVNLLYGTITEFCTQQSCPHM 116 (243)
T ss_pred ccccccccccCcccCccHHHHHHHHHhhcccccHHHHhcCCCCCchhhHHHHhHHHHHHHHHHHHHHHHHHcCcccCccc
Confidence 457788899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEeccCCCCCCCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhH
Q 028014 88 TAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHF 167 (215)
Q Consensus 88 sag~~~~ylw~d~~~~~~p~~~sA~~Yi~~~~~w~~~~l~d~~~FPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~ 167 (215)
+||++++|+|+|+. +||++||||||||++|+||+++++||+||||++|.+||+||.+.||+|+|||||||||||++||
T Consensus 117 sag~~yeY~W~D~~--~kp~~~sApqYId~lmtw~q~~~dde~iFPtK~g~~FP~nF~~~vk~Ilr~lFrvyAHiY~~Hf 194 (243)
T KOG0440|consen 117 SAGPNYEYLWADEK--GKPVRVSAPQYIDYLMTWCQNQLDDENIFPTKYGNPFPGNFESVVKKILRRLFRVYAHIYHSHF 194 (243)
T ss_pred cCCCcceeeeeccc--CCccccCchHHHHHHHHHHHHhccccccCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999976 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHhhCCCCCCCcCchHHHHHHhhcCC
Q 028014 168 QKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSIIVPY 215 (215)
Q Consensus 168 ~~~~~l~~e~hlNt~fkhF~~F~~ef~Li~~kel~Pl~~li~~l~~~~ 215 (215)
+.+.+|++++|||++||||++|++||+|||+||++||++||+.|..+|
T Consensus 195 ~~i~~L~l~ahlNt~F~Hf~~f~~eF~LiD~kE~aPl~~Li~~l~~~d 242 (243)
T KOG0440|consen 195 DEIVALQLEAHLNTSFKHFILFAREFQLLDKKETAPLLELIESLLSQD 242 (243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccCHHhhhhHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999998775
No 2
>KOG1903 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.5e-80 Score=506.56 Aligned_cols=207 Identities=55% Similarity=1.074 Sum_probs=204.2
Q ss_pred CCCCCccCCCCCCCCCCccchHHHHHHHHhcCC-chhHhhcCCCCCCchhHHHHhHHHHHhhhhhhhhhhccccCCCCCC
Q 028014 7 GRNQRTFRPKKSAPSGSKGAQLRKHIDATLGSG-NLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTAENCP 85 (215)
Q Consensus 7 ~~~~~t~~p~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~V~lP~g~d~neWlA~h~~~f~~~in~l~~~~~e~CT~~tCP 85 (215)
..+.+||||||++++|+.||++++-+|++|.+| ||+.+|+||+|+|.|+|+|+|++||||.||++||+++|+||++|||
T Consensus 10 fnK~KTFRPkkkF~~GT~Rf~LhK~AqAsL~sG~dLr~aV~LPpgEn~nDW~AVHvVDFFNRiNLiYGTise~Cte~sCP 89 (217)
T KOG1903|consen 10 FNKDKTFRPKKKFEPGTQRFELHKKAQASLNSGLDLRSAVRLPPGENLNDWLAVHVVDFFNRINLIYGTISEFCTETSCP 89 (217)
T ss_pred HccCCccCCCCCCCCCceeeehHHHHHHHHhcCcchHHhccCCCCCCccceeeeehhhhhhhhHhhhhhHhhhccccCCC
Confidence 478899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeEeccCCCCCCCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 028014 86 TMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHS 165 (215)
Q Consensus 86 ~Msag~~~~ylw~d~~~~~~p~~~sA~~Yi~~~~~w~~~~l~d~~~FPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~ 165 (215)
+|++|+.++|+|+|+..|+||+.+|||+||+++||||+.+||||.+||+..|+|||+||.++|++|+.||||||.|+|.|
T Consensus 90 ~MsGG~rYEY~WqD~~~ykkPt~L~Ap~Ym~lLMDWIE~~INnE~vFPt~~~vpFPKnF~qi~~KILtRLFRVFVHVYIH 169 (217)
T KOG1903|consen 90 VMSGGPRYEYRWQDERKYKKPTALSAPRYMALLMDWIEVQINNEEVFPTSVGVPFPKNFLQICKKILTRLFRVFVHVYIH 169 (217)
T ss_pred cccCCCcceeEecccccccCCccCCcHHHHHHHHHHHHHhccccccccccCCCCCcHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcchhHHHHHHHHHHHHHHhhCCCCCCCcCchHHHHHHhhc
Q 028014 166 HFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSIIV 213 (215)
Q Consensus 166 H~~~~~~l~~e~hlNt~fkhF~~F~~ef~Li~~kel~Pl~~li~~l~~ 213 (215)
||+.+.++|+|+|+|||||||++|++||+|||.||||||+|+.++++.
T Consensus 170 HFDri~~mGaE~HvNtcYKHFYyFv~Ef~li~~kELEpLkeMT~R~c~ 217 (217)
T KOG1903|consen 170 HFDRILSMGAEAHVNTCYKHFYYFVTEFGLIDTKELEPLKEMTERICH 217 (217)
T ss_pred hhHHHHHhccHHHHHHHHHHHHHHhhhccccchhhcchHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999873
No 3
>PF03637 Mob1_phocein: Mob1/phocein family; InterPro: IPR005301 Mob1 is an essential Saccharomyces cerevisiae (Baker's yeast) protein, identified from a two-hybrid screen, that binds Mps1p, a protein kinase essential for spindle pole body duplication and mitotic checkpoint regulation. Mob1 contains no known structural motifs; however MOB1 is a member of a conserved gene family and shares sequence similarity with a nonessential yeast gene, MOB2. Mob1 is a phosphoprotein in vivo and a substrate for the Mps1p kinase in vitro. Conditional alleles of MOB1 cause a late nuclear division arrest at restrictive temperature []. This family also includes phocein Q9QYW3 from SWISSPROT, a rat protein that by yeast two hybrid interacts with striatin [].; PDB: 2HJN_A 1PI1_A 1R3B_A.
Probab=100.00 E-value=1.5e-78 Score=507.29 Aligned_cols=175 Identities=67% Similarity=1.218 Sum_probs=159.8
Q ss_pred HHHHHHHhcCCchhHhhcCCCCCCchhHHHHhHHHHHhhhhhhhhhhccccCCCCCCCCCCCCCceeEeccCCCCCCCcc
Q 028014 29 RKHIDATLGSGNLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTAENCPTMTAGPKYEYRWADGVQIKKPIE 108 (215)
Q Consensus 29 ~~~~~~~l~~~~l~~~V~lP~g~d~neWlA~h~~~f~~~in~l~~~~~e~CT~~tCP~Msag~~~~ylw~d~~~~~~p~~ 108 (215)
|++++++|++|||+++|+||+|+|+|||||+|++|||++||++||+++|+||++|||+|+||++|+|+|+|++ ++|++
T Consensus 1 ~~~~~~~l~~~~l~~~V~lP~g~d~~eWla~~~~~f~~~in~l~~~v~e~Ct~~tCP~Msag~~~~Ylw~d~~--~kp~~ 78 (175)
T PF03637_consen 1 QQYVQATLGKGNLRTLVKLPKGVDENEWLAVHTVDFFNEINLLYGVVSEFCTPETCPTMSAGPNWEYLWADHK--KKPVK 78 (175)
T ss_dssp HHHHHHHCCGG-HHHHCS-STT--HHHHHHHHHHHHHHHHHHHHHHHGGGS-TTTTSSEESSTTCEE-BSSST--TS-BS
T ss_pred CHHHHHHHhcCCHHHHhcCcCCCChhhHHHHhhHHHHHHHHHHHhhccCcCCcccCcCccCCccceeeeeccC--CCCcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999976 68999
Q ss_pred cChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcchhHHHHHHHHHHH
Q 028014 109 VSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFIL 188 (215)
Q Consensus 109 ~sA~~Yi~~~~~w~~~~l~d~~~FPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~fkhF~~ 188 (215)
||||+||+++|+|++++|+|+++|||+.|++||++|.++|++|||||||||||||++||+.|.++|+++|||++||||++
T Consensus 79 ~~A~~Yi~~~l~w~~~~l~d~~iFPt~~~~~fp~~f~~~v~~I~rrLfRvyaHiY~~H~~~~~~l~~~~hln~~F~hF~~ 158 (175)
T PF03637_consen 79 CSAPQYIDHLLDWIQSQLNDEKIFPTKPGVPFPKNFKKTVKKIFRRLFRVYAHIYHHHFEQFVELELEAHLNTCFKHFVL 158 (175)
T ss_dssp --HHHHHHHHHHHHHHHHTSTTTSSSSTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHccCcccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCCcCchH
Q 028014 189 FTCEFGLIDKKELGPLQ 205 (215)
Q Consensus 189 F~~ef~Li~~kel~Pl~ 205 (215)
|++||+||+++|++||+
T Consensus 159 f~~eF~Li~~~el~pL~ 175 (175)
T PF03637_consen 159 FAREFDLIDEKELEPLQ 175 (175)
T ss_dssp HHHHHT-S-GGGGGGGH
T ss_pred HHHHhCCCCHHHhcccC
Confidence 99999999999999996
No 4
>KOG1852 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.5e-41 Score=275.08 Aligned_cols=182 Identities=22% Similarity=0.407 Sum_probs=172.8
Q ss_pred CCCCCCCCCccchHHHHHHHHhcCC--chhHhhcCCCCCCchhHHHHhHHHHHhhhhhhhhhhccccCCCCCCCCCCCCC
Q 028014 15 PKKSAPSGSKGAQLRKHIDATLGSG--NLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTAENCPTMTAGPK 92 (215)
Q Consensus 15 p~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~V~lP~g~d~neWlA~h~~~f~~~in~l~~~~~e~CT~~tCP~Msag~~ 92 (215)
|..++.++.+..++|+||+++|+++ |+..+..+|+|.|+++|.++|+++|+.++|.|...++..|.++||.+|+|++.
T Consensus 26 pde~feemdstlavqqyiqq~ikadpsnv~~iltppe~qdegvwkyehlrqfc~elnglav~lq~ec~p~tctqmtateq 105 (223)
T KOG1852|consen 26 PDESFEEMDSTLAVQQYIQQNIKADPSNVDKILTPPEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQ 105 (223)
T ss_pred CcchHHHHHhHHHHHHHHHHHhccCchhHHHhcCCCcccccchhhHHHHHHHHHHhhhHHHHHhcccCchHhhhhhhHhH
Confidence 5667889999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeccCCCCCCCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 028014 93 YEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKIVS 172 (215)
Q Consensus 93 ~~ylw~d~~~~~~p~~~sA~~Yi~~~~~w~~~~l~d~~~FPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~~~ 172 (215)
|.|||++| |.|.+|||++|..|++|....+||+.+.||++.++. ......+.+++||+||||+|+|+||+..|..
T Consensus 106 wiflcaah---ktpkecpaidytrhtldgaacllnsnkyfpsrvsik--essv~klgsvcrrvyrifsha~fhhr~ifde 180 (223)
T KOG1852|consen 106 WIFLCAAH---KTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIK--ESSVAKLGSVCRRVYRIFSHAYFHHRKIFDE 180 (223)
T ss_pred HHhhhhhc---CCcccCCcccchhhccccccccccCCccCCcccchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 599999999999999999999999999999999887 6779999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHHHhhCCCCCCCc-Cch
Q 028014 173 LKEEAHLNTCFKHFILFTCEFGLIDKKEL-GPL 204 (215)
Q Consensus 173 l~~e~hlNt~fkhF~~F~~ef~Li~~kel-~Pl 204 (215)
++.|+||+. +|..|+..|+|++++.| .|+
T Consensus 181 fe~etylc~---rft~~v~kynlms~e~livpi 210 (223)
T KOG1852|consen 181 FENETYLCH---RFTKFVSKYNLMSKENLIVPI 210 (223)
T ss_pred hhhhhHHHH---HHHHHHHhhhhccccceeeec
Confidence 999999997 66678899999999987 665
No 5
>KOG3261 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.67 E-value=37 Score=28.91 Aligned_cols=18 Identities=50% Similarity=0.901 Sum_probs=14.2
Q ss_pred HHHHHHHHH-HHHhhhhHH
Q 028014 151 IFKRLFRVY-AHIYHSHFQ 168 (215)
Q Consensus 151 I~rrLfRVy-aHiY~~H~~ 168 (215)
=|||-|||. |-.|+.||.
T Consensus 121 ~frRkFRVI~a~~y~k~fa 139 (202)
T KOG3261|consen 121 EFRRKFRVIHAPLYFKHFA 139 (202)
T ss_pred HHHhheeeeccHHHHHHhh
Confidence 589999975 778888874
No 6
>cd00397 DNA_BRE_C DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site residues. The best-studied members of this diverse superfamily include human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl gener
Probab=28.70 E-value=1.9e+02 Score=21.55 Aligned_cols=32 Identities=38% Similarity=0.526 Sum_probs=21.3
Q ss_pred hCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 028014 126 LDDESIFPQKLGAPFPSNFKEVVKTIFKRLFR 157 (215)
Q Consensus 126 l~d~~~FPt~~~~~FP~~F~~~v~~I~rrLfR 157 (215)
..++.+|++..+.+........+..+++++..
T Consensus 84 ~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (164)
T cd00397 84 GDEEYLFPSRRGGPAATLSRRNVKRIFKAAGR 115 (164)
T ss_pred CCCCceeecCCCCCccCCcHHHHHHHHHHHHH
Confidence 46788999987766554455566666666554
No 7
>PHA03074 late transcription factor VLTF-3; Provisional
Probab=23.90 E-value=1e+02 Score=27.01 Aligned_cols=85 Identities=15% Similarity=0.292 Sum_probs=58.3
Q ss_pred ccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHH----HHHHHHHHHHHHHHhhhhHHHHHhhcchhHHHHHH
Q 028014 108 EVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVV----KTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCF 183 (215)
Q Consensus 108 ~~sA~~Yi~~~~~w~~~~l~d~~~FPt~~~~~FP~~F~~~v----~~I~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~f 183 (215)
+++-.+=.+.+.+-...++++..+=+.+....|=.+|.+.= ++=+|..|-+.-|+=-.-.. + .-+--.-++-.|
T Consensus 58 rlls~qcs~~ii~ell~lm~kn~i~~~didan~vs~fLK~~~~inkKdYklvfeiiN~~~~e~ln-L-ttekInei~eIF 135 (225)
T PHA03074 58 RLLSNQCSGEIISELLELMNKNQISTKDVDANFVSSFLKAKERINKKDYKLVFEIINQVKDEKLN-L-TTEKINEVVEIF 135 (225)
T ss_pred HHHHhHhhHHHHHHHHHHHHHccCChhhhhHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhccc-c-cHHHHHHHHHHH
Confidence 45556777777888888889998888888877777787665 45577777666654332222 1 112234567899
Q ss_pred HHHHHHHHhhC
Q 028014 184 KHFILFTCEFG 194 (215)
Q Consensus 184 khF~~F~~ef~ 194 (215)
+||+.|+++..
T Consensus 136 k~lvfF~qent 146 (225)
T PHA03074 136 KHLVFFCQENT 146 (225)
T ss_pred HHHHHHHhccC
Confidence 99999999864
No 8
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=23.57 E-value=3.7e+02 Score=23.05 Aligned_cols=69 Identities=19% Similarity=0.311 Sum_probs=47.1
Q ss_pred CCCCCCCCCCCcch-HHHHHHH-----------HHHHHHHHHHHhhhhHHHHHhhcchhHHHHHHHHHHHHHHhhCC-CC
Q 028014 131 IFPQKLGAPFPSNF-KEVVKTI-----------FKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGL-ID 197 (215)
Q Consensus 131 ~FPt~~~~~FP~~F-~~~v~~I-----------~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~fkhF~~F~~ef~L-i~ 197 (215)
+||++....+-.++ ++.++.+ +=-+|-+.--+|+-|...++++..-+.+-+ +++.-.-|-|- +|
T Consensus 25 lfPS~qk~~~~~~~~lpllra~LIsCiSS~Wq~~Yl~yL~ie~~Yy~H~kIIeEiaGgtN~iS---R~iAaliElNW~~d 101 (200)
T PF12387_consen 25 LFPSRQKGGSCTGFLLPLLRAILISCISSKWQCFYLLYLIIELSYYMHRKIIEEIAGGTNFIS---RLIAALIELNWAMD 101 (200)
T ss_pred EccccccCCCCccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHH---HHHHHHHHhhcccc
Confidence 68988766554443 6666643 445778888999999999999877765444 77766666553 45
Q ss_pred CCCcC
Q 028014 198 KKELG 202 (215)
Q Consensus 198 ~kel~ 202 (215)
++|..
T Consensus 102 ~eE~k 106 (200)
T PF12387_consen 102 EEESK 106 (200)
T ss_pred chhhc
Confidence 55544
No 9
>PF08945 Bclx_interact: Bcl-x interacting, BH3 domain; InterPro: IPR015040 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Members of this entry induce apoptosis. The isoform BimL is more potent than the isoform BimEL. They form heterodimers with a number of antiapoptotic Bcl-2 proteins including Mcl-1, Bcl-2, Bcl-X(L), BFL-1, and BHRF1, but do not heterodimerise with proapoptotic proteins such as BAD, BOK, BAX or BAK. They are peripheral membrane proteins, associated with intracytoplasmic membranes. The BH3 motif is required for Bcl-2 binding and cytotoxicity. After antigen-driven expansion, the majority of T cells involved in an immune response die rapidly by apoptosis dependent on the Bcl-2 related proteins; Bim and Bax or Bak []. Bcl-xL regulates Bax and Bim is an important regulator of bcl-x deficiency induced cell death during hematopoiesis and testicular development in mice []. Bim(L) displaces Bcl-x(L) in the mitochondria and promotes Bax translocation during TNFalpha-induced apoptosis []. A potent inhibitor of antiapoptotic Bcl-2 family members, including Bcl-X(L), is AT-101 []. The immunophilin protein FKBP8 and its splice variant are Bcl-XL-interacting proteins and regulate the apoptotic signalling pathways in the RPE []. This protein is a long alpha helix, required for interaction with Bcl-x. It is found in BAM, Bim and Bcl2-like protein 11 []. ; PDB: 2NL9_B 2V6Q_B 3KJ0_B 3KJ1_B 3FDL_B 3D7V_B 3IO8_D 2K7W_B 2VM6_B 3IO9_B ....
Probab=22.80 E-value=67 Score=20.77 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=19.4
Q ss_pred HhhcCCCCCCchhHHHHhHHHHHhhhhhhh
Q 028014 43 EAVRLPPGEDLNEWLAVNTVDFFNQVNLLY 72 (215)
Q Consensus 43 ~~V~lP~g~d~neWlA~h~~~f~~~in~l~ 72 (215)
+.-+.|..+....|||.-++.+=++.|..|
T Consensus 6 qsq~~P~~~~PE~wiAqELRRIgDEFnasy 35 (40)
T PF08945_consen 6 QSQAEPVDMRPEIWIAQELRRIGDEFNASY 35 (40)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCccCCHHHHHHHHHHHHHHHhcccc
Confidence 344678888899999999999999998877
No 10
>PF15192 TMEM213: TMEM213 family
Probab=22.76 E-value=57 Score=24.10 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.2
Q ss_pred hHhhcCCCCCCchhHHHHhH
Q 028014 42 REAVRLPPGEDLNEWLAVNT 61 (215)
Q Consensus 42 ~~~V~lP~g~d~neWlA~h~ 61 (215)
..+.-++.|||+.-|||.-+
T Consensus 33 ~Aa~CC~~gvDeyGWIAAAV 52 (82)
T PF15192_consen 33 QAARCCHAGVDEYGWIAAAV 52 (82)
T ss_pred HHHHHhccCCchhhHHHHHH
Confidence 56777899999999999875
No 11
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=21.98 E-value=2.6e+02 Score=24.83 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=44.2
Q ss_pred CcchHHHHHHHHHHHHHHHH-HHhhhhHHHHHhhcchhHHHHHHHHHHHHHH-hhCCCCCCCcCchHHHHHHhhcC
Q 028014 141 PSNFKEVVKTIFKRLFRVYA-HIYHSHFQKIVSLKEEAHLNTCFKHFILFTC-EFGLIDKKELGPLQELIDSIIVP 214 (215)
Q Consensus 141 P~~F~~~v~~I~rrLfRVya-HiY~~H~~~~~~l~~e~hlNt~fkhF~~F~~-ef~Li~~kel~Pl~~li~~l~~~ 214 (215)
|++|...|.+..-++-|-=. -.| .-++.+.. -++.+|=.-.++++.+.. .++-.|++...-...+|+.|++.
T Consensus 167 ~~~FR~ei~~~~~~~~~~g~~~~~-~~~e~Lr~-~iEkkL~~d~~~~~~~~t~~~k~~d~e~~~~~~~~i~rL~~~ 240 (254)
T PF06798_consen 167 KKDFRREIIKYISALAREGKKFDY-TSYERLRE-AIEKKLFSDVKDLIKIITESSKTPDKEQQRKIDEVIERLIKK 240 (254)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCh-hhhHHHHH-HHHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHHc
Confidence 57888876665522211100 003 22333332 456667666788888887 77777888888889999998553
No 12
>PF12431 CitT: Transcriptional regulator
Probab=20.53 E-value=82 Score=18.88 Aligned_cols=9 Identities=56% Similarity=0.726 Sum_probs=7.4
Q ss_pred hcCCCCCCc
Q 028014 45 VRLPPGEDL 53 (215)
Q Consensus 45 V~lP~g~d~ 53 (215)
-.||+|+|.
T Consensus 21 ~~LPKGID~ 29 (30)
T PF12431_consen 21 ERLPKGIDE 29 (30)
T ss_pred cCCCCCccc
Confidence 569999985
No 13
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=20.01 E-value=1.1e+02 Score=30.82 Aligned_cols=59 Identities=20% Similarity=0.444 Sum_probs=42.8
Q ss_pred cCCCCCCchhHHHHhHHH-------HHhhhhhhhhhhccccCCCCCCCCCCCCCceeEeccCCCCCCCccc
Q 028014 46 RLPPGEDLNEWLAVNTVD-------FFNQVNLLYGTLTEFCTAENCPTMTAGPKYEYRWADGVQIKKPIEV 109 (215)
Q Consensus 46 ~lP~g~d~neWlA~h~~~-------f~~~in~l~~~~~e~CT~~tCP~Msag~~~~ylw~d~~~~~~p~~~ 109 (215)
.+-.|-..-+||+--... .++.| ..|+++=-++.|..|+.++.-+|+|+-+. |++.++|
T Consensus 13 nvS~~kslP~Wls~r~kR~lkkd~~~~~ri----eLiQdfe~p~ast~ik~s~DGqY~lAtG~-YKP~ikv 78 (703)
T KOG2321|consen 13 NVSAGKSLPDWLSDRRKRQLKKDVDYRQRI----ELIQDFEMPTASTRIKVSPDGQYLLATGT-YKPQIKV 78 (703)
T ss_pred EeecCCCchhhhhhHHHHHHhhchHHHHHH----HHHHhcCCccccceeEecCCCcEEEEecc-cCCceEE
Confidence 344677888999965433 33333 34688888889999999999999999774 6666654
Done!