Query 028014
Match_columns 215
No_of_seqs 105 out of 419
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjn_A MPS1 binder 1, maintena 100.0 1.7E-83 5.7E-88 556.4 21.9 206 8-214 29-236 (236)
2 1pi1_A MOB1A; mitotic EXIT net 100.0 2.4E-82 8.4E-87 532.9 18.6 182 33-214 2-183 (185)
3 1ae9_A Lambda integrase; DNA r 29.2 64 0.0022 23.9 4.3 31 124-157 88-118 (179)
4 3ee1_A Effector protein VIRA; 22.4 30 0.001 29.8 1.3 43 107-154 147-189 (400)
5 2kwv_A RAD30 homolog B, DNA po 20.9 29 0.001 22.4 0.7 18 40-57 5-22 (48)
6 3g46_A Globin-1; oxygen transp 13.3 3E+02 0.01 20.3 5.0 28 143-170 28-57 (146)
7 1z19_A Integrase; protein-DNA 10.9 2.9E+02 0.0099 21.5 4.5 31 124-157 191-221 (283)
8 4aya_A DNA-binding protein inh 10.9 1.7E+02 0.0057 21.5 2.7 25 110-134 68-92 (97)
9 3arc_F Cytochrome B559 subunit 10.6 1E+02 0.0036 19.3 1.2 11 53-63 16-26 (44)
10 2kn0_A FN14; tweak, TNF recept 10.2 1E+02 0.0034 21.0 1.1 24 76-101 30-53 (66)
No 1
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-83 Score=556.44 Aligned_cols=206 Identities=47% Similarity=0.881 Sum_probs=185.1
Q ss_pred CCCCccCCCCCCCCCCccchHHHHHHHHhcCC-chhHhhcCCCCCCchhHHHHhHHHHHhhhhhhhhhhccccCCCCCCC
Q 028014 8 RNQRTFRPKKSAPSGSKGAQLRKHIDATLGSG-NLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTAENCPT 86 (215)
Q Consensus 8 ~~~~t~~p~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~V~lP~g~d~neWlA~h~~~f~~~in~l~~~~~e~CT~~tCP~ 86 (215)
++++++...++.++|+++|+++++++++|++| |++++|++|+|+|+|||||+|++||||+||++||+++|+||++|||+
T Consensus 29 ~~~~~~~~~~~~~~g~~~~~l~~~~~~~l~~g~~l~~~V~lP~g~D~neWlA~h~~dFfn~in~lyg~ise~CT~~tCP~ 108 (236)
T 2hjn_A 29 SHQKPFLQPQAGTTVTTHQDIKQIVEMTLGSEGVLNQAVKLPRGEDENEWLAVHCVDFYNQINMLYGSITEFCSPQTCPR 108 (236)
T ss_dssp CCCCCCC------------CHHHHHHHHHHGGGC---CCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGCCTTTCSS
T ss_pred CCCCCCCCcCCCCCCccHHHHHHHHHHHhcCCcCHHHHhcCcCCCchhhHHHHHHHHHHHHHHHHHHHHHcccCcccCCC
Confidence 45567744557899999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEeccCCCCCCCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchH-HHHHHHHHHHHHHHHHHhhh
Q 028014 87 MTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFK-EVVKTIFKRLFRVYAHIYHS 165 (215)
Q Consensus 87 Msag~~~~ylw~d~~~~~~p~~~sA~~Yi~~~~~w~~~~l~d~~~FPt~~~~~FP~~F~-~~v~~I~rrLfRVyaHiY~~ 165 (215)
|+||++|+|+|+|+++ ++|++|||||||+++|+||+++|+|+++|||+.|++||++|+ +.|++|||||||||||||+|
T Consensus 109 MsAg~~~~YlW~d~~~-kkp~~~~A~~Yi~~lm~wi~~~l~de~iFPs~~~~~FP~~F~~~~v~~I~RRLfRVyAHiY~~ 187 (236)
T 2hjn_A 109 MIATNEYEYLWAFQKG-QPPVSVSAPKYVECLMRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCH 187 (236)
T ss_dssp CBSSTTEEECBCSSTT-SCCBCCCHHHHHHHHHHHHHHHHTCTTTSCSSTTCCCCTTHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCeeEEeccCCC-CCCeeeCHHHHHHHHHHHHHHhccCCccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999976 799999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHhhcchhHHHHHHHHHHHHHHhhCCCCCCCcCchHHHHHHhhcC
Q 028014 166 HFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSIIVP 214 (215)
Q Consensus 166 H~~~~~~l~~e~hlNt~fkhF~~F~~ef~Li~~kel~Pl~~li~~l~~~ 214 (215)
||+.|.++|+|+|||+|||||++|+++|+||+++|++||++||+.|+++
T Consensus 188 Hf~~~~~l~~e~hLNt~FkHF~~F~~ef~Li~~kel~PL~~li~~l~~~ 236 (236)
T 2hjn_A 188 HFNEILELNLQTVLNTSFRHFCLFAQEFELLRPADFGPLLELVMELRDR 236 (236)
T ss_dssp SHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSCGGGGGGGHHHHHHHCC-
T ss_pred HHHHHHHcccchhhhhhHHHHHHHHHHhcCCCHHHhhhHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999763
No 2
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=100.00 E-value=2.4e-82 Score=532.88 Aligned_cols=182 Identities=69% Similarity=1.260 Sum_probs=178.8
Q ss_pred HHHhcCCchhHhhcCCCCCCchhHHHHhHHHHHhhhhhhhhhhccccCCCCCCCCCCCCCceeEeccCCCCCCCcccChH
Q 028014 33 DATLGSGNLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTAENCPTMTAGPKYEYRWADGVQIKKPIEVSAP 112 (215)
Q Consensus 33 ~~~l~~~~l~~~V~lP~g~d~neWlA~h~~~f~~~in~l~~~~~e~CT~~tCP~Msag~~~~ylw~d~~~~~~p~~~sA~ 112 (215)
+++|++||++++|++|+|+|+|||||+|++||||+||++||+++|+||++|||+|+||++|+|+|+|++++++|++||||
T Consensus 2 ~~~l~~g~l~~~v~lP~g~d~~eWla~~~~df~~~in~ly~~i~e~Ct~~tCP~MsAg~~~~Ylw~d~~~~kkp~~~~A~ 81 (185)
T 1pi1_A 2 EATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSAP 81 (185)
T ss_dssp CCCTTCCCHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTTCSSEESSTTCEECBCCSSSCCSCBCCCHH
T ss_pred ccchhcCcHHHHhcCcCCCchhhhHHHHHHHHHHHHHHHHHHHhcccCcccCccccCCCCeEEEEecCCCCCCCcccCHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999878899999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcchhHHHHHHHHHHHHHHh
Q 028014 113 KYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCE 192 (215)
Q Consensus 113 ~Yi~~~~~w~~~~l~d~~~FPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~fkhF~~F~~e 192 (215)
|||+++|+|++++|+|+++|||+.|++||++|++.|++|||||||||||||+|||+.|.++|+|+|||+|||||++|+++
T Consensus 82 ~Yi~~~m~wi~~~l~d~~iFPs~~~~~fp~~f~~~~~~I~rRLfRVyaHiY~~Hf~~~~~l~~e~hlNt~f~hF~~F~~e 161 (185)
T 1pi1_A 82 KYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQE 161 (185)
T ss_dssp HHHHHHHHHHHHHHTCTTTSCSSTTSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcceehhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCcCchHHHHHHhhcC
Q 028014 193 FGLIDKKELGPLQELIDSIIVP 214 (215)
Q Consensus 193 f~Li~~kel~Pl~~li~~l~~~ 214 (215)
|+||+++|++||++||+.|++.
T Consensus 162 f~Li~~kel~Pl~~li~~~~~~ 183 (185)
T 1pi1_A 162 FNLIDRRELAPLQELIEKLGSK 183 (185)
T ss_dssp HTCSCGGGGGGGHHHHHHSSCC
T ss_pred hCCCCHHHHHhHHHHHHHHhcc
Confidence 9999999999999999999865
No 3
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=29.15 E-value=64 Score=23.89 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=20.2
Q ss_pred HhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 028014 124 SQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFR 157 (215)
Q Consensus 124 ~~l~d~~~FPt~~~~~FP~~F~~~v~~I~rrLfR 157 (215)
..-.++-+||+..|.+... ..+..+++++.+
T Consensus 88 ~~~~~~~lF~~~~g~~~~~---~~~~~~~~~~~~ 118 (179)
T 1ae9_A 88 EILGGETIIASTRREPLSS---GTVSRYFMRARK 118 (179)
T ss_dssp HHTCCSBSSCCTTSCCCCH---HHHHHHHHHHHH
T ss_pred ccCCCCeEEEcCCCCcCCh---hHHHHHHHHHHH
Confidence 3456888999998877543 445555555544
No 4
>3ee1_A Effector protein VIRA; beta barrels, six-stranded beta barrel, hydrolase, protease, secreted, thiol protease, virulence; 3.01A {Shigella flexneri}
Probab=22.38 E-value=30 Score=29.84 Aligned_cols=43 Identities=23% Similarity=0.436 Sum_probs=33.7
Q ss_pred cccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHH
Q 028014 107 IEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKR 154 (215)
Q Consensus 107 ~~~sA~~Yi~~~~~w~~~~l~d~~~FPt~~~~~FP~~F~~~v~~I~rr 154 (215)
+--|||+-|+.+..-+...+-+...||.+.. +|-..--.|+|-
T Consensus 147 thkpapevietaincctsiipnddyfpvkdt-----dfnsvwhdiyrd 189 (400)
T 3ee1_A 147 THKPAPEVIETAINCCTSIIPNDDYFPVKDT-----DFNSVWHDIYRD 189 (400)
T ss_dssp CSSCCHHHHHHHHHSCEEECCCCSBCCCCTT-----TTTTHHHHHHHH
T ss_pred cCCCCHHHHHHHHhhhccccCCCCccccccC-----chhhHHHHHHHH
Confidence 4568999999999999999999999999862 444444555554
No 5
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=20.90 E-value=29 Score=22.38 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=12.8
Q ss_pred chhHhhcCCCCCCchhHH
Q 028014 40 NLREAVRLPPGEDLNEWL 57 (215)
Q Consensus 40 ~l~~~V~lP~g~d~neWl 57 (215)
|..-+..||+|+|..+.-
T Consensus 5 ~~~p~~~lP~~VD~eVF~ 22 (48)
T 2kwv_A 5 SDLPLQALPEGVDQEVFK 22 (48)
T ss_dssp --CCTTSSCTTCCGGGTT
T ss_pred ccCccccCCCCCCHHHHH
Confidence 556677999999987653
No 6
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=13.31 E-value=3e+02 Score=20.31 Aligned_cols=28 Identities=14% Similarity=0.212 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHHHHHHHHH--hhhhHHHH
Q 028014 143 NFKEVVKTIFKRLFRVYAHI--YHSHFQKI 170 (215)
Q Consensus 143 ~F~~~v~~I~rrLfRVyaHi--Y~~H~~~~ 170 (215)
+-...-..+|.|||..|=-+ ||.|+..+
T Consensus 28 ~~~~~g~~~~~rlF~~~P~~k~~F~~~~~~ 57 (146)
T 3g46_A 28 DKKGNGVALMTTLFADNQETIGYFKRLGDV 57 (146)
T ss_dssp GHHHHHHHHHHHHHHHCGGGGGGGGGGCCG
T ss_pred CHHHHHHHHHHHHHHHCHHHHHHHHHHcCC
Confidence 34566678888888887554 77776443
No 7
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=10.92 E-value=2.9e+02 Score=21.46 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=19.6
Q ss_pred HhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 028014 124 SQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFR 157 (215)
Q Consensus 124 ~~l~d~~~FPt~~~~~FP~~F~~~v~~I~rrLfR 157 (215)
..-.++-+||+..|.+.. ...+...++++.+
T Consensus 191 ~~~~~~~lF~~~~g~~~~---~~~~~~~~~~~~~ 221 (283)
T 1z19_A 191 EILGGETIIASTRREPLS---SGTVSRYFMRARK 221 (283)
T ss_dssp HHHCSSBSSCCTTSSCCC---HHHHHHHHHHHHH
T ss_pred HhCCCCceEeCCCCCcCC---hhhHHHHHHHHHH
Confidence 344688899998887653 3445555555543
No 8
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=10.89 E-value=1.7e+02 Score=21.48 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=17.2
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCCCC
Q 028014 110 SAPKYVEYLMDWIESQLDDESIFPQ 134 (215)
Q Consensus 110 sA~~Yi~~~~~w~~~~l~d~~~FPt 134 (215)
-|++||.++..-.++.-.+...|-+
T Consensus 68 lAi~YI~~Lq~~L~~~~~~~~~~~~ 92 (97)
T 4aya_A 68 HVIDYILDLQIALDSHLKPSFLVQS 92 (97)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCC---
T ss_pred HHHHHHHHHHHHHhcCCCCcchhhc
Confidence 5889999998888776666666644
No 9
>3arc_F Cytochrome B559 subunit beta; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_F* 3a0b_F* 3a0h_F* 1w5c_F* 3kzi_F* 3bz1_F* 1s5l_F* 2axt_F* 3bz2_F* 3prq_F* 3prr_F*
Probab=10.62 E-value=1e+02 Score=19.34 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=8.4
Q ss_pred chhHHHHhHHH
Q 028014 53 LNEWLAVNTVD 63 (215)
Q Consensus 53 ~neWlA~h~~~ 63 (215)
.--|+|+|.+.
T Consensus 16 TvRWlAvH~la 26 (44)
T 3arc_F 16 TVRWVAVHTLA 26 (44)
T ss_dssp CHHHHHHHHHH
T ss_pred eeehhhhhccc
Confidence 34699999865
No 10
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=10.18 E-value=1e+02 Score=20.98 Aligned_cols=24 Identities=33% Similarity=1.077 Sum_probs=18.0
Q ss_pred ccccCCCCCCCCCCCCCceeEeccCC
Q 028014 76 TEFCTAENCPTMTAGPKYEYRWADGV 101 (215)
Q Consensus 76 ~e~CT~~tCP~Msag~~~~ylw~d~~ 101 (215)
+++| ..||+-++++.+-.+|..-+
T Consensus 30 SdfC--~~cps~t~p~~fpllWp~l~ 53 (66)
T 2kn0_A 30 SDFC--QNCPSKTEQPDFPWIWVEQK 53 (66)
T ss_dssp CTTT--TTCCCCSCSCCCCSSCC---
T ss_pred cccc--cCCCCCCCCCCccchhhhhc
Confidence 6788 48999999988888997543
Done!