Query 028016
Match_columns 215
No_of_seqs 181 out of 2039
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:58:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01135 PCMT: Protein-L-isoas 100.0 7.2E-37 1.6E-41 233.2 18.4 201 1-209 5-208 (209)
2 COG2518 Pcm Protein-L-isoaspar 100.0 1.5E-35 3.3E-40 221.7 22.1 197 1-209 6-205 (209)
3 PRK13942 protein-L-isoaspartat 100.0 1E-33 2.2E-38 218.0 23.5 199 1-208 9-209 (212)
4 TIGR00080 pimt protein-L-isoas 100.0 1.4E-32 3E-37 212.4 23.9 203 1-212 10-214 (215)
5 PRK13944 protein-L-isoaspartat 100.0 1.3E-32 2.9E-37 210.9 23.0 198 1-206 5-205 (205)
6 KOG1661 Protein-L-isoaspartate 100.0 1.7E-31 3.7E-36 197.1 18.9 215 1-215 13-236 (237)
7 PRK00312 pcm protein-L-isoaspa 100.0 5.6E-29 1.2E-33 192.0 23.1 197 1-210 12-211 (212)
8 PRK13943 protein-L-isoaspartat 99.9 2.4E-25 5.2E-30 180.0 20.2 201 1-212 10-220 (322)
9 COG2226 UbiE Methylase involve 99.8 3.7E-18 8E-23 131.9 11.5 140 14-174 11-156 (238)
10 PF01209 Ubie_methyltran: ubiE 99.8 1.7E-18 3.6E-23 134.8 9.4 130 33-173 17-152 (233)
11 PF12847 Methyltransf_18: Meth 99.8 1.3E-17 2.9E-22 115.6 11.6 101 68-174 1-111 (112)
12 COG2242 CobL Precorrin-6B meth 99.8 4.5E-17 9.8E-22 119.9 14.4 121 46-175 14-136 (187)
13 COG2264 PrmA Ribosomal protein 99.7 4.2E-17 9E-22 129.3 11.1 152 11-174 93-263 (300)
14 COG2519 GCD14 tRNA(1-methylade 99.7 1.1E-16 2.3E-21 122.9 8.9 142 43-192 71-213 (256)
15 PLN02233 ubiquinone biosynthes 99.7 1.2E-15 2.5E-20 121.2 15.1 108 66-176 71-184 (261)
16 PF13847 Methyltransf_31: Meth 99.7 4.8E-16 1E-20 113.8 11.2 103 67-176 2-112 (152)
17 TIGR02469 CbiT precorrin-6Y C5 99.7 2.8E-15 6.1E-20 105.5 14.7 114 52-174 5-122 (124)
18 TIGR02752 MenG_heptapren 2-hep 99.7 1.8E-15 4E-20 118.1 14.9 113 56-176 35-153 (231)
19 PF06325 PrmA: Ribosomal prote 99.7 1.7E-16 3.6E-21 126.9 9.1 143 37-194 134-289 (295)
20 PF08704 GCD14: tRNA methyltra 99.7 2.1E-16 4.6E-21 123.1 9.3 139 41-186 15-158 (247)
21 PRK00107 gidB 16S rRNA methylt 99.7 2.4E-15 5.2E-20 113.2 14.6 104 66-177 43-148 (187)
22 PLN02244 tocopherol O-methyltr 99.7 1.7E-15 3.8E-20 124.5 14.8 102 67-175 117-224 (340)
23 PRK00377 cbiT cobalt-precorrin 99.7 1.2E-15 2.6E-20 116.4 12.5 121 48-175 22-146 (198)
24 PF05175 MTS: Methyltransferas 99.7 1.2E-15 2.5E-20 113.7 11.6 112 56-177 21-143 (170)
25 PRK08287 cobalt-precorrin-6Y C 99.7 5.2E-15 1.1E-19 111.9 14.0 116 48-174 13-131 (187)
26 TIGR00406 prmA ribosomal prote 99.6 4E-15 8.6E-20 119.8 13.8 126 37-175 132-260 (288)
27 COG2227 UbiG 2-polyprenyl-3-me 99.6 2.7E-16 5.8E-21 119.9 6.6 132 67-208 58-224 (243)
28 TIGR03533 L3_gln_methyl protei 99.6 2.3E-15 5.1E-20 120.7 12.3 138 34-178 85-255 (284)
29 TIGR00138 gidB 16S rRNA methyl 99.6 2.2E-15 4.8E-20 113.1 11.1 101 68-177 42-145 (181)
30 COG2230 Cfa Cyclopropane fatty 99.6 3.9E-15 8.5E-20 117.2 12.5 109 54-174 60-176 (283)
31 PF02353 CMAS: Mycolic acid cy 99.6 2.9E-15 6.2E-20 119.2 11.2 107 55-173 51-165 (273)
32 PRK14103 trans-aconitate 2-met 99.6 4.1E-15 8.9E-20 117.9 11.9 104 56-176 19-128 (255)
33 PRK11207 tellurite resistance 99.6 8E-15 1.7E-19 111.8 12.7 105 56-172 20-132 (197)
34 PF08241 Methyltransf_11: Meth 99.6 2.6E-15 5.7E-20 100.5 8.3 89 73-172 1-95 (95)
35 PLN02396 hexaprenyldihydroxybe 99.6 3.6E-15 7.8E-20 121.1 10.4 102 68-177 131-238 (322)
36 PRK15451 tRNA cmo(5)U34 methyl 99.6 1.4E-14 3E-19 114.3 13.4 103 65-174 53-164 (247)
37 PRK01683 trans-aconitate 2-met 99.6 1.1E-14 2.4E-19 115.6 13.0 107 55-176 20-132 (258)
38 PRK00517 prmA ribosomal protei 99.6 1.4E-14 3.1E-19 114.4 12.9 117 39-174 94-213 (250)
39 PRK11036 putative S-adenosyl-L 99.6 9.2E-15 2E-19 115.8 11.8 102 67-176 43-151 (255)
40 PRK07402 precorrin-6B methylas 99.6 2.6E-14 5.6E-19 108.9 13.8 123 46-177 20-145 (196)
41 PRK13168 rumA 23S rRNA m(5)U19 99.6 8E-15 1.7E-19 124.7 11.5 149 54-214 285-439 (443)
42 PRK11805 N5-glutamine S-adenos 99.6 2.8E-14 6.1E-19 115.6 14.0 136 35-177 98-266 (307)
43 PRK11873 arsM arsenite S-adeno 99.6 2.2E-14 4.8E-19 114.7 13.2 102 66-173 75-182 (272)
44 TIGR00477 tehB tellurite resis 99.6 2.4E-14 5.2E-19 109.0 12.3 105 56-173 20-132 (195)
45 COG4106 Tam Trans-aconitate me 99.6 5.7E-15 1.2E-19 110.4 8.3 107 57-178 21-133 (257)
46 PRK15001 SAM-dependent 23S rib 99.6 3.2E-14 6.9E-19 117.6 13.6 113 57-176 219-342 (378)
47 PTZ00098 phosphoethanolamine N 99.6 2.6E-14 5.7E-19 113.6 12.1 109 55-175 41-157 (263)
48 PRK00121 trmB tRNA (guanine-N( 99.6 2.3E-14 4.9E-19 109.7 11.1 103 68-177 40-159 (202)
49 PRK10258 biotin biosynthesis p 99.6 3E-14 6.5E-19 112.6 12.1 106 55-176 31-142 (251)
50 TIGR00740 methyltransferase, p 99.6 1.1E-13 2.4E-18 108.6 14.7 102 66-174 51-161 (239)
51 PRK14966 unknown domain/N5-glu 99.6 9.2E-14 2E-18 115.2 14.5 136 33-177 217-384 (423)
52 TIGR00537 hemK_rel_arch HemK-r 99.6 3.7E-14 7.9E-19 106.6 11.1 100 66-177 17-143 (179)
53 TIGR00446 nop2p NOL1/NOP2/sun 99.6 8.8E-14 1.9E-18 110.7 13.8 106 66-177 69-202 (264)
54 PLN02781 Probable caffeoyl-CoA 99.6 2.4E-14 5.2E-19 111.8 10.3 112 55-172 56-176 (234)
55 PF13659 Methyltransf_26: Meth 99.6 1.1E-14 2.5E-19 101.6 7.3 101 69-176 1-117 (117)
56 COG2813 RsmC 16S RNA G1207 met 99.6 9.9E-14 2.1E-18 109.7 13.1 111 56-177 148-269 (300)
57 PRK11088 rrmA 23S rRNA methylt 99.6 1.1E-13 2.4E-18 110.6 13.6 98 68-177 85-184 (272)
58 PRK08317 hypothetical protein; 99.5 1.9E-13 4E-18 106.9 14.2 112 56-176 9-126 (241)
59 PRK14967 putative methyltransf 99.5 2.3E-13 5.1E-18 105.7 14.5 101 66-176 34-161 (223)
60 PRK04266 fibrillarin; Provisio 99.5 2E-13 4.3E-18 105.9 14.0 114 53-175 56-177 (226)
61 COG4123 Predicted O-methyltran 99.5 4.6E-14 9.9E-19 109.3 10.3 113 57-176 34-172 (248)
62 TIGR00536 hemK_fam HemK family 99.5 1.6E-13 3.5E-18 110.3 13.9 135 35-177 79-247 (284)
63 PRK14903 16S rRNA methyltransf 99.5 1E-13 2.2E-18 117.3 13.2 106 66-177 235-369 (431)
64 PRK03522 rumB 23S rRNA methylu 99.5 5.2E-14 1.1E-18 114.7 10.9 135 68-214 173-311 (315)
65 TIGR00091 tRNA (guanine-N(7)-) 99.5 8.3E-14 1.8E-18 105.9 11.0 103 68-177 16-135 (194)
66 PLN02336 phosphoethanolamine N 99.5 1.4E-13 3.1E-18 118.3 13.5 109 56-175 256-370 (475)
67 PRK14904 16S rRNA methyltransf 99.5 2.6E-13 5.7E-18 115.5 14.9 105 66-177 248-380 (445)
68 TIGR03534 RF_mod_PrmC protein- 99.5 3E-13 6.4E-18 106.8 14.2 101 68-176 87-219 (251)
69 PRK09489 rsmC 16S ribosomal RN 99.5 2E-13 4.4E-18 112.0 13.6 109 56-176 186-305 (342)
70 PRK01544 bifunctional N5-gluta 99.5 1.4E-13 3E-18 118.5 13.2 137 33-176 78-271 (506)
71 TIGR01177 conserved hypothetic 99.5 2.4E-13 5.2E-18 111.5 13.9 116 51-177 167-297 (329)
72 PRK14901 16S rRNA methyltransf 99.5 2.4E-13 5.1E-18 115.4 14.0 106 66-177 250-387 (434)
73 PRK12335 tellurite resistance 99.5 2.7E-13 5.9E-18 109.2 12.8 95 68-173 120-222 (287)
74 PRK11705 cyclopropane fatty ac 99.5 3.8E-13 8.2E-18 112.1 13.9 103 57-175 158-268 (383)
75 PRK15068 tRNA mo(5)U34 methylt 99.5 3.3E-13 7.2E-18 110.1 13.3 100 67-174 121-226 (322)
76 TIGR02072 BioC biotin biosynth 99.5 3.4E-13 7.3E-18 105.5 12.8 112 54-176 19-137 (240)
77 KOG1270 Methyltransferases [Co 99.5 4.2E-14 9.1E-19 108.8 7.2 101 69-176 90-197 (282)
78 PF13649 Methyltransf_25: Meth 99.5 2.5E-14 5.4E-19 97.4 5.4 90 72-168 1-101 (101)
79 TIGR00452 methyltransferase, p 99.5 4.7E-13 1E-17 108.3 13.0 101 66-174 119-225 (314)
80 PF03848 TehB: Tellurite resis 99.5 2.9E-13 6.4E-18 101.6 10.9 106 56-174 20-133 (192)
81 smart00828 PKS_MT Methyltransf 99.5 2.8E-13 6E-18 105.3 11.2 99 70-175 1-105 (224)
82 PRK14902 16S rRNA methyltransf 99.5 6.6E-13 1.4E-17 113.1 14.1 106 66-177 248-382 (444)
83 TIGR03704 PrmC_rel_meth putati 99.5 9.6E-13 2.1E-17 103.8 13.9 134 33-177 49-219 (251)
84 PRK00216 ubiE ubiquinone/menaq 99.5 1.3E-12 2.9E-17 102.2 14.5 113 55-174 40-158 (239)
85 COG4122 Predicted O-methyltran 99.5 5.2E-13 1.1E-17 102.0 11.6 112 55-172 47-164 (219)
86 PRK09328 N5-glutamine S-adenos 99.5 8.5E-13 1.8E-17 105.7 13.5 131 36-176 75-240 (275)
87 PLN03075 nicotianamine synthas 99.5 7.5E-13 1.6E-17 105.5 12.9 104 67-176 122-235 (296)
88 PRK14968 putative methyltransf 99.5 2E-12 4.3E-17 97.6 14.8 111 57-177 14-151 (188)
89 PLN02476 O-methyltransferase 99.5 3.9E-13 8.4E-18 106.5 11.2 112 55-172 106-226 (278)
90 COG2890 HemK Methylase of poly 99.5 7.7E-13 1.7E-17 105.8 13.1 133 34-176 76-240 (280)
91 PLN02490 MPBQ/MSBQ methyltrans 99.5 6.1E-13 1.3E-17 108.5 12.6 98 67-174 112-215 (340)
92 TIGR00563 rsmB ribosomal RNA s 99.5 1E-12 2.2E-17 111.4 14.5 114 56-177 228-371 (426)
93 TIGR03840 TMPT_Se_Te thiopurin 99.5 6.3E-13 1.4E-17 102.3 11.8 104 67-173 33-151 (213)
94 PF01596 Methyltransf_3: O-met 99.5 1.1E-13 2.4E-18 105.6 7.5 113 55-173 33-154 (205)
95 PF05401 NodS: Nodulation prot 99.5 2.1E-13 4.5E-18 101.5 8.2 94 69-174 44-146 (201)
96 KOG1540 Ubiquinone biosynthesi 99.5 1.3E-12 2.7E-17 100.2 12.6 108 66-176 98-216 (296)
97 KOG1271 Methyltransferases [Ge 99.5 9.5E-13 2.1E-17 96.0 11.3 103 70-178 69-185 (227)
98 PRK10901 16S rRNA methyltransf 99.5 1.6E-12 3.6E-17 110.1 14.6 110 57-176 235-374 (427)
99 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.2E-12 2.5E-17 108.0 12.9 111 57-176 113-237 (390)
100 TIGR02085 meth_trns_rumB 23S r 99.5 2.4E-13 5.1E-18 113.2 8.8 150 51-214 214-371 (374)
101 PF08242 Methyltransf_12: Meth 99.5 2.1E-14 4.6E-19 97.4 1.7 91 73-170 1-99 (99)
102 TIGR00479 rumA 23S rRNA (uraci 99.4 3.4E-13 7.4E-18 114.5 8.7 135 66-210 290-431 (431)
103 PTZ00146 fibrillarin; Provisio 99.4 2E-12 4.3E-17 102.7 12.3 101 66-174 130-237 (293)
104 PF07021 MetW: Methionine bios 99.4 7E-13 1.5E-17 98.5 8.9 97 65-176 10-111 (193)
105 PF13489 Methyltransf_23: Meth 99.4 5E-13 1.1E-17 98.2 7.9 103 56-177 10-118 (161)
106 PRK06922 hypothetical protein; 99.4 2.2E-12 4.7E-17 111.9 12.8 101 66-174 416-537 (677)
107 PRK10909 rsmD 16S rRNA m(2)G96 99.4 5.5E-12 1.2E-16 95.9 13.6 121 48-177 34-162 (199)
108 smart00138 MeTrc Methyltransfe 99.4 4.2E-12 9E-17 101.0 12.1 111 67-177 98-245 (264)
109 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 7.8E-12 1.7E-16 96.8 13.2 110 55-174 28-143 (223)
110 PRK04457 spermidine synthase; 99.4 4.7E-12 1E-16 100.5 11.9 104 66-175 64-178 (262)
111 PLN02589 caffeoyl-CoA O-methyl 99.4 2.7E-12 5.9E-17 100.5 10.3 112 55-172 67-188 (247)
112 PRK05785 hypothetical protein; 99.4 7.7E-12 1.7E-16 97.3 12.7 96 56-167 39-140 (226)
113 PRK11188 rrmJ 23S rRNA methylt 99.4 4.4E-12 9.6E-17 97.5 11.2 103 56-176 40-167 (209)
114 KOG2904 Predicted methyltransf 99.4 1E-11 2.3E-16 96.1 13.0 137 33-175 109-286 (328)
115 TIGR02716 C20_methyl_CrtF C-20 99.4 1.1E-11 2.5E-16 100.7 13.8 106 57-173 140-253 (306)
116 TIGR02021 BchM-ChlM magnesium 99.4 9.3E-12 2E-16 96.5 12.6 107 56-173 43-157 (219)
117 TIGR03438 probable methyltrans 99.4 5.7E-12 1.2E-16 102.1 11.6 116 54-174 49-177 (301)
118 TIGR03587 Pse_Me-ase pseudamin 99.4 1.2E-11 2.5E-16 94.7 12.5 80 65-157 40-119 (204)
119 smart00650 rADc Ribosomal RNA 99.4 8.9E-12 1.9E-16 92.7 11.4 105 56-173 3-112 (169)
120 TIGR02143 trmA_only tRNA (urac 99.4 1.2E-12 2.5E-17 108.2 7.0 134 70-214 199-349 (353)
121 PRK13255 thiopurine S-methyltr 99.4 9.8E-12 2.1E-16 96.0 11.0 101 66-172 35-153 (218)
122 PRK05031 tRNA (uracil-5-)-meth 99.3 1.5E-12 3.3E-17 107.9 6.7 151 51-214 188-358 (362)
123 PRK15128 23S rRNA m(5)C1962 me 99.3 8.3E-12 1.8E-16 104.3 9.6 105 66-176 218-341 (396)
124 PLN02336 phosphoethanolamine N 99.3 1.3E-11 2.8E-16 106.2 11.0 105 56-173 27-141 (475)
125 KOG2915 tRNA(1-methyladenosine 99.3 4.6E-12 1E-16 97.9 7.3 132 40-178 79-214 (314)
126 TIGR00438 rrmJ cell division p 99.3 2.4E-11 5.1E-16 92.0 11.0 94 65-175 29-147 (188)
127 PRK05134 bifunctional 3-demeth 99.3 3.6E-11 7.8E-16 94.0 12.3 101 66-176 46-153 (233)
128 PHA03412 putative methyltransf 99.3 3.7E-11 8E-16 92.6 11.7 92 46-153 31-124 (241)
129 PRK00811 spermidine synthase; 99.3 1.9E-11 4.1E-16 98.2 10.5 108 67-176 75-193 (283)
130 PLN02672 methionine S-methyltr 99.3 5.8E-11 1.3E-15 108.9 14.6 142 35-178 83-282 (1082)
131 PLN02366 spermidine synthase 99.3 4.3E-11 9.4E-16 96.8 12.2 106 67-175 90-207 (308)
132 COG2263 Predicted RNA methylas 99.3 8E-11 1.7E-15 86.8 11.9 96 46-153 22-118 (198)
133 PRK06202 hypothetical protein; 99.3 5.7E-11 1.2E-15 92.9 11.9 95 67-171 59-164 (232)
134 PRK11933 yebU rRNA (cytosine-C 99.3 7.2E-11 1.6E-15 100.4 13.2 105 66-176 111-244 (470)
135 KOG1541 Predicted protein carb 99.3 2.4E-11 5.3E-16 91.3 9.0 106 53-174 35-160 (270)
136 KOG4300 Predicted methyltransf 99.3 8.6E-12 1.9E-16 92.9 6.4 97 69-173 77-181 (252)
137 TIGR02081 metW methionine bios 99.3 4.9E-11 1.1E-15 90.7 10.5 96 66-176 11-111 (194)
138 TIGR00417 speE spermidine synt 99.3 3.6E-11 7.7E-16 96.1 10.0 105 69-176 73-188 (270)
139 PHA03411 putative methyltransf 99.3 1.3E-10 2.8E-15 91.5 12.7 94 45-155 45-138 (279)
140 PRK07580 Mg-protoporphyrin IX 99.3 1.5E-10 3.2E-15 90.3 12.9 92 55-157 49-141 (230)
141 TIGR01983 UbiG ubiquinone bios 99.3 5.6E-11 1.2E-15 92.3 10.5 100 68-176 45-151 (224)
142 PRK11783 rlmL 23S rRNA m(2)G24 99.3 4.2E-11 9.1E-16 107.2 11.0 105 67-177 537-659 (702)
143 PF08003 Methyltransf_9: Prote 99.2 1.5E-10 3.2E-15 91.7 12.3 98 67-174 114-219 (315)
144 PLN02585 magnesium protoporphy 99.2 1.8E-10 3.8E-15 93.5 12.9 97 54-157 129-226 (315)
145 TIGR00095 RNA methyltransferas 99.2 1.7E-10 3.8E-15 87.2 11.9 119 50-176 32-161 (189)
146 cd02440 AdoMet_MTases S-adenos 99.2 1.4E-10 3E-15 78.0 9.6 95 71-173 1-103 (107)
147 COG1092 Predicted SAM-dependen 99.2 1.1E-10 2.5E-15 96.5 9.8 104 69-178 218-340 (393)
148 PRK00274 ksgA 16S ribosomal RN 99.2 2.3E-10 5E-15 91.5 11.3 103 48-164 24-126 (272)
149 PTZ00338 dimethyladenosine tra 99.2 2.9E-10 6.2E-15 91.6 11.7 108 45-164 14-122 (294)
150 PRK13256 thiopurine S-methyltr 99.2 5.1E-10 1.1E-14 86.4 12.4 119 50-174 28-163 (226)
151 COG2265 TrmA SAM-dependent met 99.2 5.7E-11 1.2E-15 100.0 7.5 145 54-210 281-431 (432)
152 PRK01581 speE spermidine synth 99.2 2.8E-10 6.2E-15 92.9 10.9 107 67-175 149-269 (374)
153 PF03602 Cons_hypoth95: Conser 99.2 1.6E-10 3.4E-15 86.8 8.7 125 46-177 20-156 (183)
154 PF02390 Methyltransf_4: Putat 99.2 2.7E-10 5.9E-15 86.5 9.6 101 70-177 19-136 (195)
155 COG1041 Predicted DNA modifica 99.2 4.2E-10 9.1E-15 90.8 11.0 114 51-175 182-311 (347)
156 PRK14896 ksgA 16S ribosomal RN 99.2 9.1E-10 2E-14 87.4 12.7 105 46-165 8-113 (258)
157 KOG1975 mRNA cap methyltransfe 99.1 6E-11 1.3E-15 93.9 5.7 126 66-193 115-256 (389)
158 PF03291 Pox_MCEL: mRNA cappin 99.1 2.7E-10 5.8E-15 93.0 9.6 111 68-180 62-192 (331)
159 COG4976 Predicted methyltransf 99.1 1.5E-11 3.2E-16 93.0 1.7 110 51-176 110-227 (287)
160 PRK03612 spermidine synthase; 99.1 3.2E-10 6.8E-15 98.3 10.1 108 67-176 296-417 (521)
161 PF01170 UPF0020: Putative RNA 99.1 7.6E-10 1.7E-14 83.0 10.8 118 48-173 10-150 (179)
162 TIGR00755 ksgA dimethyladenosi 99.1 1.1E-09 2.3E-14 86.8 12.2 108 46-168 8-120 (253)
163 PF05958 tRNA_U5-meth_tr: tRNA 99.1 4.8E-11 1E-15 98.6 3.9 133 70-213 198-347 (352)
164 COG0220 Predicted S-adenosylme 99.1 9.8E-10 2.1E-14 85.0 10.5 101 70-177 50-167 (227)
165 COG0742 N6-adenine-specific me 99.1 5E-09 1.1E-13 77.9 13.7 135 36-177 9-157 (187)
166 KOG3420 Predicted RNA methylas 99.1 2.7E-10 5.9E-15 80.2 6.5 102 43-153 21-124 (185)
167 PF02475 Met_10: Met-10+ like- 99.1 9.2E-10 2E-14 83.5 9.6 100 65-171 98-199 (200)
168 KOG1663 O-methyltransferase [S 99.1 2.1E-09 4.7E-14 81.6 11.0 112 55-172 61-181 (237)
169 PRK04338 N(2),N(2)-dimethylgua 99.1 2.4E-09 5.1E-14 89.3 12.2 114 55-176 45-160 (382)
170 KOG3191 Predicted N6-DNA-methy 99.1 3.2E-09 7E-14 77.7 11.3 99 69-175 44-169 (209)
171 PF10672 Methyltrans_SAM: S-ad 99.1 5.2E-10 1.1E-14 89.2 7.7 105 67-177 122-241 (286)
172 PF05724 TPMT: Thiopurine S-me 99.1 1E-09 2.2E-14 84.7 9.0 116 50-171 22-152 (218)
173 COG0144 Sun tRNA and rRNA cyto 99.1 5E-09 1.1E-13 86.7 13.5 107 65-177 153-291 (355)
174 PF06080 DUF938: Protein of un 99.0 2E-09 4.2E-14 81.2 9.2 116 57-173 13-140 (204)
175 KOG0820 Ribosomal RNA adenine 99.0 4.5E-09 9.7E-14 81.7 11.2 100 42-153 33-133 (315)
176 KOG2899 Predicted methyltransf 99.0 1.3E-09 2.8E-14 83.2 8.1 112 59-173 49-208 (288)
177 PRK11727 23S rRNA mA1618 methy 99.0 3.1E-09 6.8E-14 86.2 10.8 82 68-155 114-201 (321)
178 KOG3010 Methyltransferase [Gen 99.0 5.8E-10 1.3E-14 85.1 5.7 95 70-172 35-134 (261)
179 COG3963 Phospholipid N-methylt 99.0 4.1E-09 8.9E-14 76.1 9.7 112 50-174 32-156 (194)
180 PLN02823 spermine synthase 99.0 3.5E-09 7.5E-14 86.7 10.3 104 68-174 103-220 (336)
181 KOG1499 Protein arginine N-met 99.0 1.2E-09 2.7E-14 87.8 7.3 100 65-172 57-165 (346)
182 PF10294 Methyltransf_16: Puta 99.0 4.7E-09 1E-13 78.4 9.9 106 65-175 42-157 (173)
183 COG0421 SpeE Spermidine syntha 98.9 1.1E-08 2.4E-13 81.6 11.1 104 70-176 78-192 (282)
184 COG0030 KsgA Dimethyladenosine 98.9 1.5E-08 3.2E-13 79.4 11.4 96 46-154 9-106 (259)
185 KOG1500 Protein arginine N-met 98.9 9E-09 1.9E-13 82.3 9.1 100 68-176 177-284 (517)
186 PRK00536 speE spermidine synth 98.9 1.9E-08 4.1E-13 79.4 10.5 115 54-176 57-173 (262)
187 PRK00050 16S rRNA m(4)C1402 me 98.9 5.6E-09 1.2E-13 83.8 7.3 89 54-152 7-99 (296)
188 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.9 9.5E-09 2.1E-13 82.5 8.2 105 66-176 83-221 (283)
189 KOG2361 Predicted methyltransf 98.9 6.5E-09 1.4E-13 79.5 6.8 95 71-173 74-182 (264)
190 TIGR00478 tly hemolysin TlyA f 98.9 2.2E-08 4.8E-13 77.6 9.7 98 67-174 74-171 (228)
191 COG2520 Predicted methyltransf 98.9 2.6E-08 5.7E-13 81.0 10.3 102 66-174 186-289 (341)
192 PF09445 Methyltransf_15: RNA 98.9 4.1E-09 9E-14 77.1 5.1 75 71-153 2-79 (163)
193 PF05219 DREV: DREV methyltran 98.8 4.2E-08 9.1E-13 76.3 10.8 89 68-174 94-188 (265)
194 PF00891 Methyltransf_2: O-met 98.8 3.8E-08 8.3E-13 77.3 10.4 91 66-173 98-198 (241)
195 COG2521 Predicted archaeal met 98.8 5.6E-09 1.2E-13 79.4 5.0 107 66-178 132-249 (287)
196 PF02384 N6_Mtase: N-6 DNA Met 98.8 2.3E-08 5E-13 81.5 8.8 125 46-176 26-185 (311)
197 PF05185 PRMT5: PRMT5 arginine 98.8 1.6E-08 3.5E-13 85.8 7.5 97 69-171 187-294 (448)
198 TIGR02987 met_A_Alw26 type II 98.8 1.4E-07 3E-12 82.3 13.1 103 45-153 3-122 (524)
199 PRK04148 hypothetical protein; 98.8 1E-07 2.2E-12 67.4 9.8 91 67-173 15-108 (134)
200 KOG2187 tRNA uracil-5-methyltr 98.8 5.1E-08 1.1E-12 82.0 9.4 148 52-210 369-533 (534)
201 PF01269 Fibrillarin: Fibrilla 98.8 2.5E-07 5.3E-12 70.5 12.1 112 55-174 59-178 (229)
202 PF01564 Spermine_synth: Sperm 98.7 1.9E-08 4E-13 79.2 6.1 106 67-175 75-192 (246)
203 TIGR00308 TRM1 tRNA(guanine-26 98.7 1.1E-07 2.4E-12 79.0 10.8 100 70-175 46-148 (374)
204 PRK01544 bifunctional N5-gluta 98.7 1.4E-07 2.9E-12 81.7 11.8 103 68-177 347-465 (506)
205 PRK10611 chemotaxis methyltran 98.7 9.7E-08 2.1E-12 76.5 10.0 133 43-177 91-265 (287)
206 KOG1122 tRNA and rRNA cytosine 98.7 1.1E-07 2.3E-12 78.2 9.7 105 66-177 239-374 (460)
207 COG1352 CheR Methylase of chem 98.7 2.8E-07 6.1E-12 72.9 10.9 105 69-173 97-240 (268)
208 PF02527 GidB: rRNA small subu 98.7 1.5E-07 3.3E-12 70.6 8.9 113 56-176 33-150 (184)
209 PF01739 CheR: CheR methyltran 98.7 3.5E-08 7.5E-13 74.9 5.4 109 68-176 31-177 (196)
210 COG0116 Predicted N6-adenine-s 98.7 5.8E-07 1.3E-11 73.8 12.6 126 44-177 169-347 (381)
211 PLN02232 ubiquinone biosynthes 98.6 1.1E-07 2.4E-12 70.0 7.2 75 97-174 1-81 (160)
212 PRK11783 rlmL 23S rRNA m(2)G24 98.6 8.8E-07 1.9E-11 79.7 13.5 124 48-177 171-350 (702)
213 PF05891 Methyltransf_PK: AdoM 98.6 1.6E-07 3.5E-12 71.4 6.2 96 69-173 56-160 (218)
214 COG0357 GidB Predicted S-adeno 98.5 7.1E-07 1.5E-11 68.3 9.4 96 69-172 68-166 (215)
215 PF05148 Methyltransf_8: Hypot 98.5 1.9E-07 4.2E-12 70.4 6.2 94 55-174 60-158 (219)
216 PF12147 Methyltransf_20: Puta 98.5 4.5E-06 9.8E-11 66.0 13.5 105 67-176 134-251 (311)
217 COG4076 Predicted RNA methylas 98.5 2.1E-07 4.6E-12 68.7 5.8 92 69-171 33-132 (252)
218 KOG3115 Methyltransferase-like 98.5 8.7E-07 1.9E-11 66.2 8.7 146 24-174 17-183 (249)
219 PF00398 RrnaAD: Ribosomal RNA 98.5 8.3E-07 1.8E-11 70.7 9.3 95 46-153 9-107 (262)
220 PF08123 DOT1: Histone methyla 98.5 9.1E-07 2E-11 67.6 8.2 119 51-172 27-156 (205)
221 TIGR03439 methyl_EasF probable 98.4 2.2E-06 4.8E-11 69.7 9.7 115 54-174 62-197 (319)
222 TIGR00006 S-adenosyl-methyltra 98.4 2.6E-06 5.7E-11 68.6 9.9 91 52-152 6-101 (305)
223 PRK10742 putative methyltransf 98.4 2E-06 4.4E-11 66.9 8.9 94 57-155 77-176 (250)
224 COG0293 FtsJ 23S rRNA methylas 98.4 3.5E-06 7.5E-11 63.8 9.4 102 56-175 34-160 (205)
225 KOG3045 Predicted RNA methylas 98.4 2.3E-06 4.9E-11 66.4 7.9 92 55-174 168-264 (325)
226 COG4262 Predicted spermidine s 98.4 5.9E-06 1.3E-10 67.2 10.5 111 67-178 288-411 (508)
227 PF03059 NAS: Nicotianamine sy 98.4 9.9E-06 2.1E-10 64.4 11.7 103 70-177 122-233 (276)
228 COG1889 NOP1 Fibrillarin-like 98.3 1E-05 2.2E-10 60.6 10.7 112 54-174 61-180 (231)
229 PF13679 Methyltransf_32: Meth 98.3 2.7E-05 5.9E-10 56.1 11.7 105 67-175 24-132 (141)
230 PF04816 DUF633: Family of unk 98.2 1E-05 2.2E-10 61.9 7.9 75 72-152 1-75 (205)
231 KOG2940 Predicted methyltransf 98.2 4.7E-06 1E-10 63.7 5.7 101 67-177 71-177 (325)
232 PF13578 Methyltransf_24: Meth 98.2 1.7E-07 3.7E-12 64.1 -1.9 94 73-172 1-103 (106)
233 KOG1596 Fibrillarin and relate 98.2 8.7E-06 1.9E-10 62.6 7.1 99 65-175 153-262 (317)
234 PF03141 Methyltransf_29: Puta 98.1 6.5E-06 1.4E-10 69.6 6.4 93 70-178 119-223 (506)
235 TIGR01444 fkbM_fam methyltrans 98.1 1.4E-05 3E-10 57.5 7.2 58 71-135 1-58 (143)
236 KOG2198 tRNA cytosine-5-methyl 98.1 2.3E-05 5E-10 63.9 8.8 107 65-177 152-299 (375)
237 PF01728 FtsJ: FtsJ-like methy 98.1 4.1E-06 8.9E-11 62.9 4.1 92 68-176 23-141 (181)
238 COG2384 Predicted SAM-dependen 98.0 4.4E-05 9.5E-10 58.1 9.0 83 65-153 13-95 (226)
239 PF09243 Rsm22: Mitochondrial 98.0 7.1E-05 1.5E-09 60.0 10.8 47 69-115 34-80 (274)
240 KOG0024 Sorbitol dehydrogenase 98.0 1.6E-05 3.4E-10 63.8 6.1 99 65-174 166-273 (354)
241 PF05971 Methyltransf_10: Prot 98.0 0.00011 2.3E-09 59.1 11.0 85 69-160 103-194 (299)
242 COG0275 Predicted S-adenosylme 98.0 7.3E-05 1.6E-09 59.6 9.7 89 54-151 11-104 (314)
243 COG4798 Predicted methyltransf 98.0 1.8E-05 3.9E-10 59.0 5.7 102 65-173 45-165 (238)
244 COG1064 AdhP Zn-dependent alco 98.0 7.9E-05 1.7E-09 60.9 10.0 95 65-174 163-259 (339)
245 COG1063 Tdh Threonine dehydrog 98.0 0.00015 3.1E-09 60.3 11.8 99 66-174 166-269 (350)
246 KOG1709 Guanidinoacetate methy 98.0 7.9E-05 1.7E-09 56.5 9.0 99 66-173 99-205 (271)
247 COG3897 Predicted methyltransf 97.9 2.4E-05 5.3E-10 58.4 5.8 95 67-174 78-178 (218)
248 PRK11760 putative 23S rRNA C24 97.9 9.1E-05 2E-09 60.4 9.5 92 66-173 209-304 (357)
249 KOG1269 SAM-dependent methyltr 97.9 5.1E-05 1.1E-09 62.8 7.5 107 60-173 102-214 (364)
250 COG0500 SmtA SAM-dependent met 97.9 0.00031 6.6E-09 50.3 10.6 98 72-177 52-158 (257)
251 PF01861 DUF43: Protein of unk 97.8 0.0013 2.8E-08 51.1 14.1 115 53-176 29-151 (243)
252 KOG2730 Methylase [General fun 97.8 1.2E-05 2.6E-10 61.0 2.9 78 68-153 94-175 (263)
253 PF07091 FmrO: Ribosomal RNA m 97.8 9.8E-05 2.1E-09 57.5 8.0 92 55-155 92-183 (251)
254 PF07942 N2227: N2227-like pro 97.8 0.00033 7.2E-09 55.6 11.0 104 69-176 57-203 (270)
255 PF01795 Methyltransf_5: MraW 97.8 4.8E-05 1E-09 61.4 5.7 89 54-152 8-102 (310)
256 KOG4589 Cell division protein 97.8 7.5E-05 1.6E-09 55.4 6.1 96 65-177 66-187 (232)
257 PF04445 SAM_MT: Putative SAM- 97.8 8.6E-05 1.9E-09 57.6 6.6 87 66-155 71-163 (234)
258 COG0286 HsdM Type I restrictio 97.8 0.00048 1E-08 59.7 11.8 125 46-177 166-329 (489)
259 KOG1331 Predicted methyltransf 97.7 4.1E-05 8.9E-10 60.4 4.4 94 66-176 43-145 (293)
260 PF04989 CmcI: Cephalosporin h 97.7 0.00056 1.2E-08 52.0 9.9 114 50-172 16-145 (206)
261 PF02005 TRM: N2,N2-dimethylgu 97.6 0.00017 3.7E-09 60.2 7.1 106 67-176 48-156 (377)
262 PF04672 Methyltransf_19: S-ad 97.6 0.0014 3E-08 51.8 11.5 115 54-176 55-192 (267)
263 COG1189 Predicted rRNA methyla 97.6 0.00052 1.1E-08 53.0 8.8 107 56-176 68-180 (245)
264 PRK09880 L-idonate 5-dehydroge 97.6 0.00034 7.4E-09 57.8 8.1 98 66-173 167-265 (343)
265 KOG3987 Uncharacterized conser 97.6 1E-05 2.2E-10 60.9 -0.9 88 69-174 113-207 (288)
266 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 0.00013 2.8E-09 57.5 4.9 114 58-174 46-199 (256)
267 KOG3178 Hydroxyindole-O-methyl 97.5 0.00069 1.5E-08 55.2 8.5 90 70-175 179-276 (342)
268 KOG2352 Predicted spermine/spe 97.5 0.0024 5.1E-08 54.3 11.8 100 65-173 44-160 (482)
269 KOG2671 Putative RNA methylase 97.4 0.00046 9.9E-09 56.0 6.5 81 66-153 206-294 (421)
270 PRK09424 pntA NAD(P) transhydr 97.4 0.0028 6E-08 55.0 11.4 96 67-174 163-285 (509)
271 PF06962 rRNA_methylase: Putat 97.4 0.0004 8.6E-09 49.6 5.1 74 95-174 1-92 (140)
272 KOG1562 Spermidine synthase [A 97.3 0.00075 1.6E-08 53.7 6.7 105 69-176 122-238 (337)
273 KOG3201 Uncharacterized conser 97.3 8.7E-05 1.9E-09 53.8 1.3 106 69-178 30-144 (201)
274 PRK11524 putative methyltransf 97.3 0.0011 2.4E-08 53.5 7.7 56 54-115 197-252 (284)
275 KOG1501 Arginine N-methyltrans 97.3 0.0011 2.3E-08 55.6 7.3 58 70-134 68-125 (636)
276 cd08230 glucose_DH Glucose deh 97.3 0.0019 4.1E-08 53.6 8.9 95 66-173 170-268 (355)
277 PF01555 N6_N4_Mtase: DNA meth 97.2 0.0015 3.2E-08 50.4 7.2 52 54-111 180-231 (231)
278 cd08237 ribitol-5-phosphate_DH 97.1 0.0038 8.2E-08 51.6 9.4 90 66-173 161-255 (341)
279 PF11599 AviRa: RRNA methyltra 97.1 0.00093 2E-08 50.8 4.7 105 68-172 51-212 (246)
280 KOG1253 tRNA methyltransferase 97.1 0.0007 1.5E-08 57.4 4.4 106 66-176 107-218 (525)
281 COG1867 TRM1 N2,N2-dimethylgua 97.1 0.0038 8.2E-08 51.3 8.2 102 69-177 53-157 (380)
282 TIGR01202 bchC 2-desacetyl-2-h 97.0 0.004 8.7E-08 50.7 8.0 87 67-173 143-230 (308)
283 PHA01634 hypothetical protein 97.0 0.0082 1.8E-07 41.9 7.9 47 68-116 28-74 (156)
284 PF11968 DUF3321: Putative met 96.9 0.0031 6.8E-08 48.2 6.1 82 70-176 53-151 (219)
285 KOG4058 Uncharacterized conser 96.9 0.0069 1.5E-07 43.4 7.3 109 55-172 61-170 (199)
286 PRK13699 putative methylase; P 96.9 0.0061 1.3E-07 47.5 7.8 48 66-116 161-208 (227)
287 TIGR03366 HpnZ_proposed putati 96.9 0.0063 1.4E-07 48.8 8.0 99 66-174 118-218 (280)
288 TIGR03451 mycoS_dep_FDH mycoth 96.8 0.014 3E-07 48.5 10.2 99 65-173 173-275 (358)
289 TIGR02822 adh_fam_2 zinc-bindi 96.8 0.018 3.9E-07 47.3 10.6 91 65-173 162-253 (329)
290 cd08283 FDH_like_1 Glutathione 96.7 0.026 5.7E-07 47.4 11.0 100 65-174 181-306 (386)
291 cd00401 AdoHcyase S-adenosyl-L 96.7 0.0095 2.1E-07 50.4 8.2 88 66-173 199-288 (413)
292 cd08281 liver_ADH_like1 Zinc-d 96.7 0.015 3.2E-07 48.6 9.3 97 66-173 189-289 (371)
293 COG3129 Predicted SAM-dependen 96.7 0.018 3.9E-07 44.5 8.7 100 54-160 60-170 (292)
294 PF00107 ADH_zinc_N: Zinc-bind 96.7 0.0047 1E-07 43.3 5.3 85 78-176 1-91 (130)
295 cd08239 THR_DH_like L-threonin 96.7 0.0084 1.8E-07 49.3 7.5 98 66-173 161-261 (339)
296 cd00315 Cyt_C5_DNA_methylase C 96.6 0.0088 1.9E-07 48.0 7.2 70 71-154 2-73 (275)
297 PF07279 DUF1442: Protein of u 96.5 0.074 1.6E-06 40.7 10.9 112 55-173 29-147 (218)
298 KOG2793 Putative N2,N2-dimethy 96.4 0.039 8.5E-07 43.3 9.3 103 69-174 87-199 (248)
299 cd08254 hydroxyacyl_CoA_DH 6-h 96.4 0.041 8.9E-07 44.9 10.1 96 66-173 163-262 (338)
300 TIGR00561 pntA NAD(P) transhyd 96.4 0.032 7E-07 48.5 9.4 93 68-172 163-282 (511)
301 COG5459 Predicted rRNA methyla 96.4 0.008 1.7E-07 49.2 5.3 102 70-177 115-228 (484)
302 PLN02740 Alcohol dehydrogenase 96.3 0.011 2.3E-07 49.6 6.3 98 65-173 195-299 (381)
303 PRK10309 galactitol-1-phosphat 96.3 0.061 1.3E-06 44.4 10.3 98 66-173 158-259 (347)
304 COG1565 Uncharacterized conser 96.2 0.042 9.2E-07 45.3 8.8 75 41-115 40-131 (370)
305 KOG0023 Alcohol dehydrogenase, 96.2 0.014 3E-07 47.3 5.9 96 65-173 178-278 (360)
306 KOG2798 Putative trehalase [Ca 96.2 0.057 1.2E-06 43.6 9.1 50 54-106 130-185 (369)
307 PLN02827 Alcohol dehydrogenase 96.1 0.016 3.5E-07 48.6 6.4 98 65-173 190-294 (378)
308 TIGR02819 fdhA_non_GSH formald 96.1 0.12 2.6E-06 43.7 11.5 98 65-173 182-298 (393)
309 PLN02586 probable cinnamyl alc 96.1 0.028 6.1E-07 46.8 7.4 96 66-173 181-277 (360)
310 TIGR03201 dearomat_had 6-hydro 96.0 0.094 2E-06 43.4 10.4 98 65-173 163-271 (349)
311 KOG1227 Putative methyltransfe 96.0 0.005 1.1E-07 49.2 2.4 95 67-169 193-290 (351)
312 cd08277 liver_alcohol_DH_like 95.9 0.031 6.8E-07 46.6 6.9 97 66-173 182-285 (365)
313 cd08285 NADP_ADH NADP(H)-depen 95.9 0.12 2.6E-06 42.7 10.3 98 66-173 164-265 (351)
314 cd05188 MDR Medium chain reduc 95.8 0.094 2E-06 41.1 9.3 98 66-174 132-232 (271)
315 COG1062 AdhC Zn-dependent alco 95.8 0.11 2.5E-06 42.5 9.4 102 57-173 176-284 (366)
316 TIGR02818 adh_III_F_hyde S-(hy 95.7 0.15 3.2E-06 42.6 10.3 98 65-173 182-286 (368)
317 cd08242 MDR_like Medium chain 95.7 0.12 2.5E-06 42.0 9.4 90 66-172 153-243 (319)
318 cd08238 sorbose_phosphate_red 95.7 0.18 3.9E-06 42.8 10.8 105 66-173 173-287 (410)
319 cd08255 2-desacetyl-2-hydroxye 95.6 0.14 3E-06 40.7 9.6 95 65-173 94-189 (277)
320 PLN03154 putative allyl alcoho 95.6 0.12 2.7E-06 42.8 9.4 97 65-173 155-257 (348)
321 PLN02514 cinnamyl-alcohol dehy 95.6 0.082 1.8E-06 44.0 8.3 95 67-173 179-274 (357)
322 KOG1099 SAM-dependent methyltr 95.4 0.031 6.6E-07 43.2 4.7 89 69-174 42-163 (294)
323 PF10237 N6-adenineMlase: Prob 95.4 0.32 6.9E-06 35.8 9.9 105 55-177 12-126 (162)
324 cd08232 idonate-5-DH L-idonate 95.4 0.063 1.4E-06 44.0 7.0 96 68-173 165-261 (339)
325 KOG0822 Protein kinase inhibit 95.3 0.13 2.7E-06 44.6 8.5 95 70-171 369-475 (649)
326 TIGR00936 ahcY adenosylhomocys 95.3 0.093 2E-06 44.4 7.8 87 67-173 193-281 (406)
327 cd08300 alcohol_DH_class_III c 95.3 0.28 6E-06 40.9 10.6 97 66-173 184-287 (368)
328 cd08301 alcohol_DH_plants Plan 95.2 0.06 1.3E-06 44.9 6.4 98 65-173 184-288 (369)
329 TIGR02825 B4_12hDH leukotriene 95.2 0.39 8.5E-06 39.1 11.1 97 65-173 135-236 (325)
330 cd05285 sorbitol_DH Sorbitol d 95.1 0.32 7E-06 40.0 10.3 98 65-173 159-264 (343)
331 cd05278 FDH_like Formaldehyde 95.1 0.33 7.1E-06 39.8 10.3 99 65-173 164-266 (347)
332 PRK05476 S-adenosyl-L-homocyst 95.1 0.1 2.2E-06 44.5 7.3 87 67-173 210-298 (425)
333 PLN02178 cinnamyl-alcohol dehy 95.0 0.097 2.1E-06 43.9 7.1 93 67-173 177-272 (375)
334 cd08231 MDR_TM0436_like Hypoth 95.0 0.36 7.7E-06 40.0 10.4 96 67-173 176-279 (361)
335 PF05206 TRM13: Methyltransfer 95.0 0.17 3.6E-06 40.3 7.9 42 66-107 16-61 (259)
336 PF10354 DUF2431: Domain of un 95.0 0.17 3.6E-06 37.5 7.4 99 74-178 2-129 (166)
337 cd08296 CAD_like Cinnamyl alco 95.0 0.078 1.7E-06 43.5 6.3 98 65-173 160-258 (333)
338 cd08278 benzyl_alcohol_DH Benz 94.8 0.38 8.3E-06 40.0 10.2 95 66-174 184-285 (365)
339 PRK01747 mnmC bifunctional tRN 94.8 0.1 2.2E-06 47.2 7.1 109 67-175 56-207 (662)
340 PLN02494 adenosylhomocysteinas 94.8 0.14 3E-06 44.1 7.4 88 67-174 252-341 (477)
341 cd08234 threonine_DH_like L-th 94.8 0.35 7.7E-06 39.4 9.8 96 65-173 156-256 (334)
342 cd08233 butanediol_DH_like (2R 94.8 0.52 1.1E-05 38.9 10.7 98 66-173 170-271 (351)
343 PF02636 Methyltransf_28: Puta 94.7 0.12 2.7E-06 40.8 6.5 47 69-115 19-72 (252)
344 PRK08306 dipicolinate synthase 94.6 0.22 4.8E-06 40.4 8.0 87 68-172 151-239 (296)
345 cd08298 CAD2 Cinnamyl alcohol 94.5 0.6 1.3E-05 38.0 10.5 91 65-173 164-255 (329)
346 cd08245 CAD Cinnamyl alcohol d 94.5 0.58 1.3E-05 38.1 10.4 95 66-174 160-256 (330)
347 COG0604 Qor NADPH:quinone redu 94.4 0.1 2.3E-06 42.9 5.7 99 65-175 139-242 (326)
348 TIGR00497 hsdM type I restrict 94.3 1.2 2.6E-05 39.0 12.2 102 48-153 197-303 (501)
349 cd08293 PTGR2 Prostaglandin re 94.3 0.51 1.1E-05 38.7 9.6 96 66-173 150-253 (345)
350 cd08295 double_bond_reductase_ 94.2 0.59 1.3E-05 38.3 9.8 97 65-173 148-250 (338)
351 TIGR00518 alaDH alanine dehydr 94.1 0.19 4E-06 42.2 6.7 93 69-173 167-266 (370)
352 KOG2651 rRNA adenine N-6-methy 94.1 0.23 5E-06 41.3 6.9 52 57-111 143-194 (476)
353 PF05711 TylF: Macrocin-O-meth 94.1 0.55 1.2E-05 37.1 8.8 102 68-173 74-211 (248)
354 cd08294 leukotriene_B4_DH_like 94.0 1.2 2.6E-05 36.1 11.3 96 65-173 140-240 (329)
355 COG4301 Uncharacterized conser 94.0 0.7 1.5E-05 36.4 9.0 102 68-174 78-193 (321)
356 cd08261 Zn_ADH7 Alcohol dehydr 94.0 0.14 2.9E-06 42.0 5.7 98 65-173 156-257 (337)
357 PF07757 AdoMet_MTase: Predict 94.0 0.11 2.5E-06 35.2 4.1 31 68-101 58-88 (112)
358 cd05281 TDH Threonine dehydrog 93.9 0.89 1.9E-05 37.3 10.3 98 66-173 161-261 (341)
359 PF03141 Methyltransf_29: Puta 93.9 0.049 1.1E-06 46.7 2.7 89 70-172 367-465 (506)
360 KOG2352 Predicted spermine/spe 93.8 0.11 2.5E-06 44.3 4.8 101 67-174 294-416 (482)
361 TIGR02356 adenyl_thiF thiazole 93.8 0.34 7.4E-06 37.0 7.1 33 69-102 21-54 (202)
362 COG1568 Predicted methyltransf 93.8 0.36 7.7E-06 38.6 7.1 77 69-153 153-231 (354)
363 PTZ00075 Adenosylhomocysteinas 93.7 0.3 6.4E-06 42.2 7.2 88 67-174 252-341 (476)
364 cd05283 CAD1 Cinnamyl alcohol 93.7 0.97 2.1E-05 37.0 10.2 94 66-173 167-262 (337)
365 PRK10083 putative oxidoreducta 93.7 0.25 5.5E-06 40.4 6.7 99 65-173 157-258 (339)
366 COG0686 Ald Alanine dehydrogen 93.7 0.26 5.6E-06 40.0 6.3 93 70-174 169-268 (371)
367 PF00145 DNA_methylase: C-5 cy 93.6 0.15 3.2E-06 41.6 5.2 70 71-155 2-73 (335)
368 cd08286 FDH_like_ADH2 formalde 93.6 1 2.2E-05 37.0 10.2 98 66-173 164-265 (345)
369 PF02254 TrkA_N: TrkA-N domain 93.6 0.47 1E-05 32.4 7.0 87 77-176 4-98 (116)
370 TIGR00675 dcm DNA-methyltransf 93.6 0.19 4.1E-06 41.2 5.7 69 72-154 1-70 (315)
371 cd08236 sugar_DH NAD(P)-depend 93.5 0.34 7.3E-06 39.7 7.2 101 65-173 156-257 (343)
372 TIGR00692 tdh L-threonine 3-de 93.5 1.3 2.7E-05 36.4 10.5 98 66-173 159-260 (340)
373 PTZ00357 methyltransferase; Pr 93.5 0.69 1.5E-05 41.7 9.0 99 71-169 703-830 (1072)
374 cd08240 6_hydroxyhexanoate_dh_ 93.4 1 2.3E-05 37.0 10.0 93 67-173 174-273 (350)
375 cd08263 Zn_ADH10 Alcohol dehyd 93.4 1 2.2E-05 37.4 9.9 99 66-174 185-287 (367)
376 KOG2360 Proliferation-associat 93.2 0.31 6.7E-06 40.6 6.2 82 66-153 211-294 (413)
377 cd05279 Zn_ADH1 Liver alcohol 93.2 0.3 6.6E-06 40.6 6.5 98 65-173 180-284 (365)
378 PLN02702 L-idonate 5-dehydroge 93.1 1.9 4E-05 35.8 11.1 99 65-173 178-284 (364)
379 PRK11524 putative methyltransf 93.1 0.16 3.5E-06 40.9 4.5 51 125-175 7-81 (284)
380 cd08265 Zn_ADH3 Alcohol dehydr 92.9 1.3 2.8E-05 37.2 9.9 99 65-173 200-306 (384)
381 COG0270 Dcm Site-specific DNA 92.8 0.45 9.7E-06 39.2 6.9 74 69-155 3-79 (328)
382 KOG1198 Zinc-binding oxidoredu 92.8 0.67 1.5E-05 38.5 7.9 100 66-176 155-258 (347)
383 cd08284 FDH_like_2 Glutathione 92.7 1.8 3.9E-05 35.4 10.3 97 66-173 165-265 (344)
384 cd05284 arabinose_DH_like D-ar 92.7 0.34 7.4E-06 39.6 6.0 97 66-173 165-265 (340)
385 cd08256 Zn_ADH2 Alcohol dehydr 92.6 2 4.3E-05 35.4 10.5 95 66-173 172-273 (350)
386 COG4627 Uncharacterized protei 92.4 0.023 4.9E-07 41.2 -1.1 46 139-184 43-96 (185)
387 cd08279 Zn_ADH_class_III Class 92.2 2.4 5.1E-05 35.2 10.6 96 65-173 179-281 (363)
388 PRK05396 tdh L-threonine 3-deh 92.2 2 4.3E-05 35.2 10.0 99 66-174 161-263 (341)
389 KOG0022 Alcohol dehydrogenase, 92.1 0.46 1E-05 38.7 5.8 94 66-172 190-292 (375)
390 PRK05562 precorrin-2 dehydroge 92.1 0.97 2.1E-05 35.1 7.4 94 67-176 23-118 (223)
391 cd08287 FDH_like_ADH3 formalde 92.1 2.8 6E-05 34.3 10.7 99 65-173 165-267 (345)
392 PRK10458 DNA cytosine methylas 92.0 0.96 2.1E-05 39.2 8.1 43 69-113 88-130 (467)
393 cd08235 iditol_2_DH_like L-idi 91.7 2.5 5.4E-05 34.6 10.1 94 66-173 163-264 (343)
394 cd08262 Zn_ADH8 Alcohol dehydr 91.7 2.7 5.9E-05 34.3 10.3 99 65-173 158-263 (341)
395 PF11312 DUF3115: Protein of u 91.7 0.36 7.8E-06 39.2 4.8 158 16-173 17-241 (315)
396 COG1748 LYS9 Saccharopine dehy 91.6 0.73 1.6E-05 38.8 6.7 75 70-155 2-80 (389)
397 cd08269 Zn_ADH9 Alcohol dehydr 91.5 3.4 7.3E-05 33.1 10.5 95 65-173 126-228 (312)
398 PRK09422 ethanol-active dehydr 91.5 2.9 6.3E-05 34.1 10.2 97 65-173 159-260 (338)
399 COG3510 CmcI Cephalosporin hyd 91.2 2.2 4.7E-05 32.4 8.0 111 50-173 53-179 (237)
400 cd00757 ThiF_MoeB_HesA_family 91.0 1.1 2.5E-05 34.8 6.9 81 69-155 21-123 (228)
401 cd08282 PFDH_like Pseudomonas 90.9 4.6 0.0001 33.7 11.0 96 65-172 173-283 (375)
402 PRK12475 thiamine/molybdopteri 90.7 1.4 2.9E-05 36.6 7.5 79 69-153 24-126 (338)
403 COG2933 Predicted SAM-dependen 90.7 2.2 4.9E-05 33.9 8.1 72 65-152 208-279 (358)
404 PRK08618 ornithine cyclodeamin 90.6 5.5 0.00012 32.8 10.9 95 67-175 125-221 (325)
405 cd01483 E1_enzyme_family Super 90.6 0.74 1.6E-05 32.8 5.2 100 71-176 1-122 (143)
406 KOG2912 Predicted DNA methylas 90.6 0.83 1.8E-05 37.3 5.8 75 73-153 107-188 (419)
407 cd05565 PTS_IIB_lactose PTS_II 90.6 0.41 9E-06 32.1 3.6 78 72-176 3-80 (99)
408 PF05050 Methyltransf_21: Meth 90.5 0.76 1.6E-05 33.2 5.4 39 74-112 1-42 (167)
409 cd08246 crotonyl_coA_red croto 90.5 4.8 0.0001 33.8 10.8 101 66-173 191-314 (393)
410 cd08274 MDR9 Medium chain dehy 90.4 4.2 9.1E-05 33.3 10.2 92 66-173 175-272 (350)
411 cd05564 PTS_IIB_chitobiose_lic 90.4 0.61 1.3E-05 31.1 4.2 76 75-176 4-79 (96)
412 cd08260 Zn_ADH6 Alcohol dehydr 90.3 3.6 7.9E-05 33.7 9.8 96 66-173 163-263 (345)
413 TIGR01470 cysG_Nterm siroheme 90.3 1.8 3.8E-05 33.2 7.3 93 68-176 8-102 (205)
414 PF03269 DUF268: Caenorhabditi 89.9 0.23 5E-06 36.3 2.0 95 69-178 2-115 (177)
415 COG1255 Uncharacterized protei 89.7 1.8 4E-05 29.8 6.0 83 70-172 15-100 (129)
416 TIGR02853 spore_dpaA dipicolin 89.6 2.8 6.1E-05 33.9 8.3 88 68-174 150-239 (287)
417 cd01491 Ube1_repeat1 Ubiquitin 89.6 7.1 0.00015 31.6 10.5 95 69-171 19-133 (286)
418 COG4017 Uncharacterized protei 89.6 2.3 5.1E-05 32.1 7.1 84 66-170 42-126 (254)
419 PF01488 Shikimate_DH: Shikima 89.6 2.1 4.4E-05 30.4 6.8 76 68-155 11-87 (135)
420 PF11899 DUF3419: Protein of u 89.5 1.4 3E-05 37.1 6.6 50 59-113 28-77 (380)
421 KOG1098 Putative SAM-dependent 89.5 0.67 1.5E-05 41.0 4.8 39 65-103 41-79 (780)
422 COG0863 DNA modification methy 89.5 2.1 4.5E-05 34.5 7.6 49 65-116 219-267 (302)
423 PRK05597 molybdopterin biosynt 89.5 2.1 4.5E-05 35.8 7.7 79 69-153 28-128 (355)
424 cd05286 QOR2 Quinone oxidoredu 89.5 0.96 2.1E-05 36.1 5.6 94 65-173 133-234 (320)
425 KOG2078 tRNA modification enzy 89.4 0.22 4.8E-06 42.0 1.8 66 66-138 247-312 (495)
426 PF06859 Bin3: Bicoid-interact 89.3 0.11 2.5E-06 35.3 0.1 31 143-173 1-43 (110)
427 cd08243 quinone_oxidoreductase 89.3 5.4 0.00012 31.9 9.9 93 66-173 140-237 (320)
428 cd08299 alcohol_DH_class_I_II_ 89.1 6.3 0.00014 32.9 10.4 98 65-173 187-291 (373)
429 PRK07688 thiamine/molybdopteri 89.0 2 4.4E-05 35.6 7.2 79 69-153 24-126 (339)
430 cd08297 CAD3 Cinnamyl alcohol 89.0 6.6 0.00014 32.0 10.4 96 66-173 163-264 (341)
431 cd05213 NAD_bind_Glutamyl_tRNA 88.9 8.7 0.00019 31.4 10.8 94 67-176 176-274 (311)
432 cd08291 ETR_like_1 2-enoyl thi 88.8 6.1 0.00013 32.1 9.9 93 69-173 143-241 (324)
433 PRK07340 ornithine cyclodeamin 88.7 6.5 0.00014 32.1 9.9 93 67-175 123-217 (304)
434 cd01492 Aos1_SUMO Ubiquitin ac 88.7 4.9 0.00011 30.5 8.6 89 69-163 21-130 (197)
435 PRK13771 putative alcohol dehy 88.6 2.2 4.7E-05 34.8 7.2 93 66-173 160-254 (334)
436 cd01487 E1_ThiF_like E1_ThiF_l 88.6 3.1 6.6E-05 30.9 7.3 32 71-103 1-33 (174)
437 cd05289 MDR_like_2 alcohol deh 88.5 3.1 6.8E-05 33.0 8.0 95 66-174 142-238 (309)
438 cd00755 YgdL_like Family of ac 88.5 3 6.4E-05 32.6 7.5 34 69-103 11-45 (231)
439 PF02826 2-Hacid_dh_C: D-isome 88.4 0.83 1.8E-05 34.0 4.2 86 68-173 35-126 (178)
440 KOG2782 Putative SAM dependent 88.2 0.42 9E-06 36.8 2.4 57 54-113 31-87 (303)
441 PF03686 UPF0146: Uncharacteri 88.2 2.8 6.2E-05 29.4 6.3 86 68-173 13-101 (127)
442 PRK15116 sulfur acceptor prote 88.1 5.6 0.00012 31.8 8.9 33 69-102 30-63 (268)
443 TIGR00853 pts-lac PTS system, 88.1 0.99 2.1E-05 30.0 4.0 80 70-176 4-83 (95)
444 PRK05786 fabG 3-ketoacyl-(acyl 87.8 11 0.00023 28.9 10.8 97 69-174 5-135 (238)
445 PRK06522 2-dehydropantoate 2-r 87.6 5.3 0.00012 32.1 8.8 94 70-173 1-99 (304)
446 PRK05708 2-dehydropantoate 2-r 87.4 4.5 9.7E-05 32.9 8.3 96 70-173 3-103 (305)
447 PRK08644 thiamine biosynthesis 87.4 3.2 7E-05 31.9 7.0 33 69-102 28-61 (212)
448 COG0771 MurD UDP-N-acetylmuram 87.3 4.2 9.1E-05 35.1 8.1 74 69-155 7-81 (448)
449 PRK09496 trkA potassium transp 87.1 9.5 0.00021 32.7 10.5 89 51-152 213-306 (453)
450 PRK06249 2-dehydropantoate 2-r 87.0 3.2 6.9E-05 33.9 7.2 96 69-173 5-105 (313)
451 PRK08762 molybdopterin biosynt 87.0 2.7 5.8E-05 35.4 6.9 80 68-153 134-235 (376)
452 COG5379 BtaA S-adenosylmethion 87.0 2.5 5.5E-05 34.2 6.2 52 60-116 57-108 (414)
453 PF00899 ThiF: ThiF family; I 86.9 1.5 3.3E-05 30.9 4.7 99 69-173 2-122 (135)
454 cd08289 MDR_yhfp_like Yhfp put 86.9 2.4 5.1E-05 34.3 6.4 96 68-174 146-243 (326)
455 cd08292 ETR_like_2 2-enoyl thi 86.7 13 0.00028 29.9 10.6 94 65-173 136-237 (324)
456 PRK08328 hypothetical protein; 86.6 4.1 8.9E-05 31.8 7.3 34 69-103 27-61 (231)
457 PRK05690 molybdopterin biosynt 86.6 3.8 8.1E-05 32.3 7.1 82 69-156 32-135 (245)
458 cd05288 PGDH Prostaglandin deh 86.6 1.9 4.1E-05 34.9 5.7 96 66-173 143-243 (329)
459 PRK07066 3-hydroxybutyryl-CoA 86.5 2.2 4.7E-05 35.1 5.9 129 70-205 8-151 (321)
460 PTZ00354 alcohol dehydrogenase 86.4 12 0.00026 30.2 10.3 97 65-173 137-239 (334)
461 PRK06153 hypothetical protein; 86.3 6.9 0.00015 33.1 8.7 33 69-102 176-209 (393)
462 PRK07411 hypothetical protein; 86.2 4 8.6E-05 34.6 7.5 80 69-154 38-139 (390)
463 COG1086 Predicted nucleoside-d 86.2 5.4 0.00012 35.3 8.3 82 69-157 250-339 (588)
464 cd01075 NAD_bind_Leu_Phe_Val_D 86.1 3.4 7.3E-05 31.5 6.4 43 68-112 27-70 (200)
465 PF01408 GFO_IDH_MocA: Oxidore 85.8 3.4 7.3E-05 28.1 5.9 91 71-175 2-94 (120)
466 KOG2920 Predicted methyltransf 85.8 0.7 1.5E-05 37.0 2.6 39 66-106 114-152 (282)
467 cd01489 Uba2_SUMO Ubiquitin ac 85.6 7.9 0.00017 31.8 8.7 97 71-173 1-120 (312)
468 PRK05600 thiamine biosynthesis 85.6 5.2 0.00011 33.7 7.8 79 69-153 41-141 (370)
469 KOG3924 Putative protein methy 85.6 1.7 3.6E-05 36.5 4.7 115 52-173 178-307 (419)
470 PRK14851 hypothetical protein; 85.6 14 0.0003 33.9 10.9 79 69-153 43-143 (679)
471 PRK07502 cyclohexadienyl dehyd 85.5 5.6 0.00012 32.3 7.9 87 70-172 7-98 (307)
472 PRK13699 putative methylase; P 85.4 1 2.2E-05 35.1 3.3 19 157-175 55-73 (227)
473 PF02737 3HCDH_N: 3-hydroxyacy 85.3 3.8 8.1E-05 30.6 6.3 97 71-175 1-115 (180)
474 cd08270 MDR4 Medium chain dehy 85.3 17 0.00037 28.9 11.0 88 68-173 132-221 (305)
475 cd01493 APPBP1_RUB Ubiquitin a 85.2 7.3 0.00016 33.5 8.6 98 69-172 20-141 (425)
476 cd08248 RTN4I1 Human Reticulon 85.0 4.3 9.4E-05 33.2 7.1 93 68-173 162-256 (350)
477 PRK10669 putative cation:proto 84.8 13 0.00029 33.0 10.5 92 70-176 418-517 (558)
478 cd01065 NAD_bind_Shikimate_DH 84.8 12 0.00026 26.7 8.7 44 67-113 17-63 (155)
479 PRK08324 short chain dehydroge 84.7 7.4 0.00016 35.5 9.0 76 68-152 421-507 (681)
480 cd01485 E1-1_like Ubiquitin ac 84.5 9.5 0.00021 29.0 8.2 33 69-102 19-52 (198)
481 PF08484 Methyltransf_14: C-me 84.5 4.9 0.00011 29.5 6.4 102 57-175 56-160 (160)
482 TIGR02355 moeB molybdopterin s 84.4 4.4 9.5E-05 31.8 6.5 34 69-103 24-58 (240)
483 cd08244 MDR_enoyl_red Possible 84.3 19 0.0004 29.0 10.5 97 66-174 140-241 (324)
484 KOG1197 Predicted quinone oxid 84.1 12 0.00026 29.9 8.5 96 65-172 143-243 (336)
485 cd08273 MDR8 Medium chain dehy 84.0 12 0.00025 30.3 9.2 95 66-174 137-233 (331)
486 COG0287 TyrA Prephenate dehydr 83.9 6.1 0.00013 31.8 7.2 40 70-110 4-45 (279)
487 cd08252 AL_MDR Arginate lyase 83.6 20 0.00043 29.0 10.4 94 69-173 150-247 (336)
488 PRK08223 hypothetical protein; 83.5 10 0.00022 30.7 8.3 79 69-153 27-127 (287)
489 KOG2539 Mitochondrial/chloropl 83.4 6.8 0.00015 33.8 7.5 106 69-177 201-318 (491)
490 cd08258 Zn_ADH4 Alcohol dehydr 83.4 11 0.00024 30.4 8.8 96 66-173 162-263 (306)
491 PRK06141 ornithine cyclodeamin 83.4 17 0.00038 29.7 9.9 94 66-172 122-217 (314)
492 PRK03562 glutathione-regulated 83.4 6.5 0.00014 35.5 7.9 93 69-176 400-500 (621)
493 PRK05808 3-hydroxybutyryl-CoA 82.8 2.4 5.2E-05 34.0 4.6 98 71-176 5-120 (282)
494 PRK06718 precorrin-2 dehydroge 82.7 19 0.00041 27.4 10.5 89 68-173 9-99 (202)
495 COG1179 Dinucleotide-utilizing 82.6 12 0.00027 29.5 8.1 35 69-104 30-65 (263)
496 PRK07878 molybdopterin biosynt 82.5 8 0.00017 32.8 7.8 34 69-103 42-76 (392)
497 TIGR02817 adh_fam_1 zinc-bindi 82.5 13 0.00029 30.1 9.0 93 69-173 149-246 (336)
498 TIGR02823 oxido_YhdH putative 82.3 4.5 9.7E-05 32.7 6.1 93 66-173 142-240 (323)
499 cd05195 enoyl_red enoyl reduct 82.3 4.6 9.9E-05 31.6 6.0 99 65-173 105-208 (293)
500 PF03492 Methyltransf_7: SAM d 82.3 7.8 0.00017 32.1 7.5 88 66-154 14-118 (334)
No 1
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=100.00 E-value=7.2e-37 Score=233.20 Aligned_cols=201 Identities=45% Similarity=0.743 Sum_probs=173.8
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028016 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
|||+|++.|.+.+++|.+||+++||+.|+|+. ..+|.|.+++++.++++++|.+.+.+++.+. ++++++|||||||
T Consensus 5 lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeIGtG 82 (209)
T PF01135_consen 5 LVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLEIGTG 82 (209)
T ss_dssp HHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEEES-T
T ss_pred HHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEEecCC
Confidence 79999999988999999999999999999996 7999999999999999999999999999998 9999999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchH
Q 028016 79 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQ 158 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~ 158 (215)
+|+.+..++...++.+.|+++|.++...+.|++++...+. .++.++.+|....++...+||.|++....+.++.
T Consensus 83 sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip~ 156 (209)
T PF01135_consen 83 SGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIPE 156 (209)
T ss_dssp TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEEES-GGGTTGGG-SEEEEEESSBBSS--H
T ss_pred CcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEEEcchhhccccCCCcCEEEEeeccchHHH
Confidence 9999999999988777899999999999999999998765 5999999999888877789999999999999999
Q ss_pred HHHHhcCCCcEEEEEeC-CCceeEEEEEEcCCCceEEEeeceEEEeecccCc
Q 028016 159 ALIDQLKPGGRMVIPVG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 209 (215)
Q Consensus 159 ~~~~~Lk~gG~lv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 209 (215)
.+.+.|++||+|++++. +..+.+..+++..++.|.....+.++|+|+...+
T Consensus 157 ~l~~qL~~gGrLV~pi~~~~~~~l~~~~k~~~g~~~~~~~~~~~fvpl~~~~ 208 (209)
T PF01135_consen 157 ALLEQLKPGGRLVAPIGQGGSQRLVRITKKGDGEFSREELFPVRFVPLVGGE 208 (209)
T ss_dssp HHHHTEEEEEEEEEEESSSSSEEEEEEEEETTTEEEEEEEEEE---B-BSCC
T ss_pred HHHHhcCCCcEEEEEEccCCceEEEEEEEeCCCcEEEEEEeeEEEEeccCCC
Confidence 99999999999999998 5678899999998899999999999999998865
No 2
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-35 Score=221.69 Aligned_cols=197 Identities=49% Similarity=0.789 Sum_probs=184.7
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028016 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
|+++++..| +.++++.+||..+||+.|+|+. ..+|.|.+++++.|+++++|.+.+.|++.+. ++++.+|||||||
T Consensus 6 l~~~lr~~~-i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIGtG 82 (209)
T COG2518 6 LVERLRTEG-ITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTG 82 (209)
T ss_pred HHHHHHHcC-CCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEECCC
Confidence 467889999 5779999999999999999988 8999999999999999999999999999998 9999999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchH
Q 028016 79 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQ 158 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~ 158 (215)
+|+.+..+++.. ++|+.+|..+...+.|++++...+. .|+.++++|....++...+||.|+++...+.+++
T Consensus 83 sGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~------~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~ 153 (209)
T COG2518 83 SGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY------ENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPE 153 (209)
T ss_pred chHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC------CceEEEECCcccCCCCCCCcCEEEEeeccCCCCH
Confidence 999999999997 6999999999999999999998665 5899999999999998899999999999999999
Q ss_pred HHHHhcCCCcEEEEEeC-CCceeEEEEEEcCCCceEEEeeceEEEeecccCc
Q 028016 159 ALIDQLKPGGRMVIPVG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 209 (215)
Q Consensus 159 ~~~~~Lk~gG~lv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 209 (215)
.+.+.|++||+++++++ +..+.+..+.+..++.+.....++++|.|+..+.
T Consensus 154 ~Ll~QL~~gGrlv~PvG~~~~q~l~~~~k~~~~~~~~~~l~~v~~vPl~~~~ 205 (209)
T COG2518 154 ALLDQLKPGGRLVIPVGSGPAQRLLRITKDGDGNFERRDLFNVRFVPLVGGD 205 (209)
T ss_pred HHHHhcccCCEEEEEEccCCcEEEEEEEEcCCCcEEEeeeccceeeecCCcc
Confidence 99999999999999999 5678889999988889999999999999999854
No 3
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=100.00 E-value=1e-33 Score=217.97 Aligned_cols=199 Identities=45% Similarity=0.716 Sum_probs=181.0
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028016 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
|||+|++.|.++|++|.++|+++||+.|+|+. ..+|.|.+++++.|+.++.|.+...+++.+. +.++.+|||+|||
T Consensus 9 ~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLdIG~G 86 (212)
T PRK13942 9 VIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGTG 86 (212)
T ss_pred HHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEEEECCc
Confidence 79999999999999999999999999999997 6899999999999999999999999999987 8889999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchH
Q 028016 79 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQ 158 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~ 158 (215)
+|+.+..+++..++.++|+++|+++.+++.+++++...+. .+++++.+|....++...+||+|++....+++++
T Consensus 87 sG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~~ 160 (212)
T PRK13942 87 SGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPK 160 (212)
T ss_pred ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCcCCCcCEEEECCCcccchH
Confidence 9999999998876667999999999999999999987654 5899999998876665578999999999999999
Q ss_pred HHHHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccC
Q 028016 159 ALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSR 208 (215)
Q Consensus 159 ~~~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 208 (215)
.+.+.|||||+|+++.....+.+..+++. .+.|.....++++|+|++..
T Consensus 161 ~l~~~LkpgG~lvi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~ 209 (212)
T PRK13942 161 PLIEQLKDGGIMVIPVGSYSQELIRVEKD-NGKIIKKKLGEVAFVPLIGK 209 (212)
T ss_pred HHHHhhCCCcEEEEEEcCCCcEEEEEEEE-CCEEEEEEeccEEEEecccC
Confidence 99999999999999988777777778775 58899999999999999875
No 4
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=100.00 E-value=1.4e-32 Score=212.40 Aligned_cols=203 Identities=45% Similarity=0.762 Sum_probs=181.7
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028016 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
|||+|++.|++++++|.++|+++||+.|.|+. ..+|.+.+++++.++++..|.....+++.+. +.++.+|||+|||
T Consensus 10 ~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~G 87 (215)
T TIGR00080 10 LIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGTG 87 (215)
T ss_pred HHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEEEECCC
Confidence 79999999988999999999999999999986 6899999999999999999999999999987 7889999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchH
Q 028016 79 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQ 158 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~ 158 (215)
+|+.+..+++..++.++|+++|+++.+++.|++++...+. .+++++.+|....+....+||+|+++....++++
T Consensus 88 sG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~ 161 (215)
T TIGR00080 88 SGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPE 161 (215)
T ss_pred ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEECCcccCCcccCCCCEEEEcCCcccccH
Confidence 9999999999875557899999999999999999988654 5899999998776555478999999999999999
Q ss_pred HHHHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccCcccc
Q 028016 159 ALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQL 212 (215)
Q Consensus 159 ~~~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 212 (215)
.+.+.|+|||+|+++.....+.+..+.+. ++.|.....+++.|+|++.+.++.
T Consensus 162 ~~~~~L~~gG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~ 214 (215)
T TIGR00080 162 ALIDQLKEGGILVMPVGEYLQVLKRAEKR-GGEIIIKDVEPVAFVPLVGGEGFQ 214 (215)
T ss_pred HHHHhcCcCcEEEEEEcCCceEEEEEEEe-CCEEEEEEeeeEEEEeCCCCccCC
Confidence 99999999999999998866667777664 688999999999999999988764
No 5
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=100.00 E-value=1.3e-32 Score=210.88 Aligned_cols=198 Identities=41% Similarity=0.579 Sum_probs=174.6
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028016 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
||++|++.|.+++++|.++|+++||+.|+|+. ..+|.|.++++..++.+..|.....+++.+. +.++.+|||+|||
T Consensus 5 lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~G 82 (205)
T PRK13944 5 LVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEVGTG 82 (205)
T ss_pred HHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEECcC
Confidence 68999999989999999999999999999986 6799999999999999999999999989886 7788999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchH
Q 028016 79 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQ 158 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~ 158 (215)
+|+.+..+++.+++.++|+++|+++.+++.+++++...+.. .+++++.+|..+.++...+||+|+++....++++
T Consensus 83 sG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-----~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~ 157 (205)
T PRK13944 83 SGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-----GVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPS 157 (205)
T ss_pred ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEECCcccCCccCCCccEEEEccCcchhhH
Confidence 99999999988765579999999999999999999876543 4689999998876655578999999999999999
Q ss_pred HHHHhcCCCcEEEEEeCCC-ceeEEEEEEcCCCceEEEeeceEEEeecc
Q 028016 159 ALIDQLKPGGRMVIPVGNI-FQDLKVVDKNQDGSLSIWSETSVRYVPLT 206 (215)
Q Consensus 159 ~~~~~Lk~gG~lv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 206 (215)
++.+.|+|||+|+++...+ .+.+..+++. ++.|.....+.+.|+|+.
T Consensus 158 ~l~~~L~~gG~lvi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~pl~ 205 (205)
T PRK13944 158 ALVRQLKDGGVLVIPVEEGVGQVLYKVVKR-GEKVEKRAITYVLFVPLR 205 (205)
T ss_pred HHHHhcCcCcEEEEEEcCCCceEEEEEEEe-CCEEEEEEeceEEEEecC
Confidence 9999999999999988764 4556667774 567888889999999974
No 6
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-31 Score=197.05 Aligned_cols=215 Identities=55% Similarity=0.938 Sum_probs=195.9
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028016 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
|||+|+++++|+.+++.+||++++|..|.|.. ..+|.|.+..+|++.+++.|.+.+.+++.|..++.||.+.||+|+|
T Consensus 13 LId~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsG 92 (237)
T KOG1661|consen 13 LIDNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSG 92 (237)
T ss_pred HHHHHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCC
Confidence 68999999999999999999999999999986 7899999999999999999999999999999899999999999999
Q ss_pred ccHHHHHHHHHhCCCCe-EEEEecChHHHHHHHHHHHhhcc----cCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCC
Q 028016 79 TGYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAA----APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
+|+++..++..++..+. ++|||.-++.++.+++++..+-. ...+...++.++.+|....+++..+||.|++.+..
T Consensus 93 SGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa 172 (237)
T KOG1661|consen 93 SGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAA 172 (237)
T ss_pred ccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceEEEccCc
Confidence 99999999988776544 49999999999999999987642 23345578999999999999888899999999999
Q ss_pred CCchHHHHHhcCCCcEEEEEeC--CCceeEEEEEEcCCCceEEEeeceEEEeecccCccccCCC
Q 028016 154 PEIPQALIDQLKPGGRMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215 (215)
Q Consensus 154 ~~~~~~~~~~Lk~gG~lv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 215 (215)
..+++++...|++||.++++.. ...|.+..+.+..++.-.....+.+.|+|++....|...|
T Consensus 173 ~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~v~yvPlt~~~~q~~~~ 236 (237)
T KOG1661|consen 173 SELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFSVRYVPLTSRESQPSRF 236 (237)
T ss_pred cccHHHHHHhhccCCeEEEeecccCceeEEEeecccccCceeeeEeeceEEEeccccccccCCC
Confidence 9999999999999999999987 5678899999988899999999999999999999887765
No 7
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.97 E-value=5.6e-29 Score=191.99 Aligned_cols=197 Identities=42% Similarity=0.667 Sum_probs=173.1
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028016 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
||++|+..| +.++++.++|+.+||+.|+|+. ..+|.+..++++.+..+++|.....+++.+. ..++.+|||+|||
T Consensus 12 ~v~~l~~~~-~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VLeiG~G 88 (212)
T PRK00312 12 LVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVLEIGTG 88 (212)
T ss_pred HHHHHHHcC-CCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEEEECCC
Confidence 689999999 7999999999999999999965 7899999999999999999999999988876 7888999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchH
Q 028016 79 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQ 158 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~ 158 (215)
+|..+..+++.. .+++++|.++.+++.+++++...+. .++++..+|....++..++||+|+++...+++++
T Consensus 89 sG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~ 159 (212)
T PRK00312 89 SGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL------HNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPR 159 (212)
T ss_pred ccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC------CceEEEECCcccCCCcCCCcCEEEEccCchhhhH
Confidence 999999888774 5899999999999999999987654 4799999998766554478999999999999999
Q ss_pred HHHHhcCCCcEEEEEeC-CCceeEEEEEEcCCCceEEEeeceEEEeecccCcc
Q 028016 159 ALIDQLKPGGRMVIPVG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 210 (215)
Q Consensus 159 ~~~~~Lk~gG~lv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 210 (215)
.+.+.|+|||.++++.. +..+....+.+ .++.|.....+++.|+|++++.+
T Consensus 160 ~l~~~L~~gG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~ 211 (212)
T PRK00312 160 ALLEQLKEGGILVAPVGGEEQQLLTRVRK-RGGRFEREVLEEVRFVPLVKGEL 211 (212)
T ss_pred HHHHhcCCCcEEEEEEcCCCceEEEEEEE-cCCeEEEEEEccEEEEecCCCCC
Confidence 99999999999999998 44556666666 56789999999999999998765
No 8
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.94 E-value=2.4e-25 Score=180.04 Aligned_cols=201 Identities=29% Similarity=0.463 Sum_probs=163.4
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC---CCCCcCCCccc-cCC---cccchhHHHHHHHHHHHhcCCCCCEEE
Q 028016 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG---TPPYVDSPMAI-GYN---ATISAPHMHATCLQLLEENLKPGMHAL 73 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~y~~~~~~~-~~~---~~~~~~~~~~~~l~~l~~~~~~~~~vL 73 (215)
|++.++..| +++ +|.+||+++||+.|+|+. ..+|.|.+++. ..+ +.++.|.+...+++.+. ++++.+||
T Consensus 10 lv~~l~~~g-v~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~~VL 85 (322)
T PRK13943 10 LFWILKKYG-ISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVL 85 (322)
T ss_pred HHHHHHHcC-CcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCCCEEE
Confidence 689999999 477 999999999999999985 46788888875 333 46778888889888876 77889999
Q ss_pred EEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCC
Q 028016 74 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 74 diG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
|+|||+|..+..+++..+..+.|+++|.++.+++.|++++...+. .++.++.+|.........+||+|+++...
T Consensus 86 DIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~ 159 (322)
T PRK13943 86 EIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFVCGDGYYGVPEFAPYDVIFVTVGV 159 (322)
T ss_pred EEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCChhhcccccCCccEEEECCch
Confidence 999999999999999865446799999999999999999887654 57899999987665554689999999888
Q ss_pred CCchHHHHHhcCCCcEEEEEeCCC---ceeEEEEEEcCCCceEEEeeceEEEeecccCcccc
Q 028016 154 PEIPQALIDQLKPGGRMVIPVGNI---FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQL 212 (215)
Q Consensus 154 ~~~~~~~~~~Lk~gG~lv~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 212 (215)
+++++.+.+.|+|||.++++.... .+......+. .+.+.....+..+|+|......++
T Consensus 160 ~~ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~~~~r~-~~~~~~~~~~~~~~l~~~G~lg~~ 220 (322)
T PRK13943 160 DEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFIKAGGNLGNL 220 (322)
T ss_pred HHhHHHHHHhcCCCCEEEEEeCCccCCCCceEEEEec-CCCceEEEEEEeeEEcccchHHHH
Confidence 888889999999999999987542 2334444443 556777788888999986654443
No 9
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.77 E-value=3.7e-18 Score=131.91 Aligned_cols=140 Identities=23% Similarity=0.374 Sum_probs=108.3
Q ss_pred HHHHHHHHhCcCcCCCCCCCCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCC
Q 028016 14 KKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ 93 (215)
Q Consensus 14 ~~~~~~~~~~~r~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~ 93 (215)
+.|...+..+. ..|+..+-.+..|.+... ...+++.+. ..+|.+|||+|||||..+..+++..+ .
T Consensus 11 ~~v~~vF~~ia---------~~YD~~n~~~S~g~~~~W---r~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g-~ 75 (238)
T COG2226 11 EKVQKVFDKVA---------KKYDLMNDLMSFGLHRLW---RRALISLLG--IKPGDKVLDVACGTGDMALLLAKSVG-T 75 (238)
T ss_pred HHHHHHHHhhH---------HHHHhhcccccCcchHHH---HHHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcC-C
Confidence 45555555553 234444434444544332 345555554 55899999999999999999999987 6
Q ss_pred CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCC
Q 028016 94 GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPG 167 (215)
Q Consensus 94 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~g 167 (215)
++++++|+|+.|++.+++++...+. .+++++.+|+...+.++++||+|.+...++.+ ++++.++||||
T Consensus 76 g~v~~~D~s~~ML~~a~~k~~~~~~------~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg 149 (238)
T COG2226 76 GEVVGLDISESMLEVAREKLKKKGV------QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG 149 (238)
T ss_pred ceEEEEECCHHHHHHHHHHhhccCc------cceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC
Confidence 8999999999999999999987654 35999999999988887999999999888654 46899999999
Q ss_pred cEEEEEe
Q 028016 168 GRMVIPV 174 (215)
Q Consensus 168 G~lv~~~ 174 (215)
|++++.-
T Consensus 150 G~~~vle 156 (238)
T COG2226 150 GRLLVLE 156 (238)
T ss_pred eEEEEEE
Confidence 9888743
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.77 E-value=1.7e-18 Score=134.79 Aligned_cols=130 Identities=27% Similarity=0.452 Sum_probs=79.9
Q ss_pred CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 028016 33 TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 33 ~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
+..|+-.+..+..|.+... ...+++.+. ..++.+|||+|||||.++..+++..++.++|+++|+|+.|++.|+++
T Consensus 17 a~~YD~~n~~ls~g~~~~w---r~~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k 91 (233)
T PF01209_consen 17 APRYDRMNDLLSFGQDRRW---RRKLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKK 91 (233)
T ss_dssp -----------------------SHHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHH
T ss_pred HHHhCCCccccCCcHHHHH---HHHHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHH
Confidence 4455544444444443322 234455554 67789999999999999999998877778999999999999999999
Q ss_pred HHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCch------HHHHHhcCCCcEEEEE
Q 028016 113 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIP 173 (215)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~------~~~~~~Lk~gG~lv~~ 173 (215)
+...+. .+++++++|+.+...++++||+|.+...++.+. +++.++|||||++++.
T Consensus 92 ~~~~~~------~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 92 LKREGL------QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp HHHTT--------SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHhhCC------CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 987654 599999999998777668999999998776544 6889999999999873
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.76 E-value=1.3e-17 Score=115.60 Aligned_cols=101 Identities=29% Similarity=0.491 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
|+.+|||+|||+|.++..+++.. +..+++++|+|+.+++.+++++...+.. ++++++++|+.......+.||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLS-----DRITFVQGDAEFDPDFLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTT-----TTEEEEESCCHGGTTTSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC-----CCeEEEECccccCcccCCCCCEE
Confidence 57899999999999999999953 4489999999999999999999555443 79999999992222233679999
Q ss_pred EEcc-CCCC---------chHHHHHhcCCCcEEEEEe
Q 028016 148 HVGA-AAPE---------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 148 ~~~~-~~~~---------~~~~~~~~Lk~gG~lv~~~ 174 (215)
++.. ..++ +++.+.+.|+|||++++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9998 4332 2567899999999999975
No 12
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.76 E-value=4.5e-17 Score=119.92 Aligned_cols=121 Identities=32% Similarity=0.521 Sum_probs=106.8
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCC
Q 028016 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 125 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 125 (215)
+..++.+.+....+..|. ++++.+++|+|||||+.+..++ +.+|.++++++|.++++++..++|...++. +
T Consensus 14 ~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~ 84 (187)
T COG2242 14 GGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGV------D 84 (187)
T ss_pred CCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCC------C
Confidence 445789998899999998 9999999999999999999999 557889999999999999999999999774 7
Q ss_pred CeEEEeCCCCCCCCCCCCccEEEEccC--CCCchHHHHHhcCCCcEEEEEeC
Q 028016 126 SLSVHVGDGRKGWPEFAPYDAIHVGAA--APEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 126 ~v~~~~~d~~~~~~~~~~~D~V~~~~~--~~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
|+.++.+++.+.+....++|.||..+. ++.+++.+...|||||+|++..-
T Consensus 85 n~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 85 NLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred cEEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEee
Confidence 999999999887776558999999886 34577889999999999999753
No 13
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=4.2e-17 Score=129.29 Aligned_cols=152 Identities=25% Similarity=0.319 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHhC--cC---cC--CCCCCCCC---------CcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEE
Q 028016 11 ITSKKVSEVMETI--DR---AC--FVPDGTPP---------YVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALD 74 (215)
Q Consensus 11 ~~~~~~~~~~~~~--~r---~~--~~~~~~~~---------y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLd 74 (215)
+.+++|.+....- |- ++ ..|.|... --|..++||.|.|.++ ..+++.+.....++.+|||
T Consensus 93 ~~e~DW~~~wk~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT----~lcL~~Le~~~~~g~~vlD 168 (300)
T COG2264 93 EDEEDWEREWKKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTT----SLCLEALEKLLKKGKTVLD 168 (300)
T ss_pred cChHHHHHHHHhcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhH----HHHHHHHHHhhcCCCEEEE
Confidence 5678888877552 11 11 22544211 1245688999999875 4455555555678999999
Q ss_pred EcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCC-
Q 028016 75 IGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA- 153 (215)
Q Consensus 75 iG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~- 153 (215)
+|||+|.+++.+++. |. .+++|+|+++.+++.+++|+..+++. ..+.....+..... ..++||+|+++--.
T Consensus 169 vGcGSGILaIAa~kL-GA-~~v~g~DiDp~AV~aa~eNa~~N~v~-----~~~~~~~~~~~~~~-~~~~~DvIVANILA~ 240 (300)
T COG2264 169 VGCGSGILAIAAAKL-GA-KKVVGVDIDPQAVEAARENARLNGVE-----LLVQAKGFLLLEVP-ENGPFDVIVANILAE 240 (300)
T ss_pred ecCChhHHHHHHHHc-CC-ceEEEecCCHHHHHHHHHHHHHcCCc-----hhhhcccccchhhc-ccCcccEEEehhhHH
Confidence 999999999999988 55 68999999999999999999987653 11222222222222 22689999988632
Q ss_pred --CCchHHHHHhcCCCcEEEEEe
Q 028016 154 --PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 154 --~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+.+.+.+.|||||+++++-
T Consensus 241 vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 241 VLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred HHHHHHHHHHHHcCCCceEEEEe
Confidence 345578899999999999974
No 14
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.1e-16 Score=122.94 Aligned_cols=142 Identities=26% Similarity=0.412 Sum_probs=119.3
Q ss_pred ccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcc
Q 028016 43 IGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL 122 (215)
Q Consensus 43 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 122 (215)
+..+..+-+|.....++..+. +.++++|+|.|+|+|.++..++..+++.++|+.+|+.++..+.|++|++..+..
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~--- 145 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG--- 145 (256)
T ss_pred CcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc---
Confidence 455667777777888888887 999999999999999999999998899999999999999999999999998765
Q ss_pred cCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC-chHHHHHhcCCCcEEEEEeCCCceeEEEEEEcCCCce
Q 028016 123 KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE-IPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSL 192 (215)
Q Consensus 123 ~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~-~~~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~ 192 (215)
+++++..+|+.+.... +.||+|+.+.+-++ +++.+.+.|+|||.+++-+|+..|.....+...+..|
T Consensus 146 --d~v~~~~~Dv~~~~~~-~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 146 --DRVTLKLGDVREGIDE-EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred --cceEEEeccccccccc-cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 4589999999887666 49999999988765 6789999999999999998887655544444433333
No 15
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.69 E-value=1.2e-15 Score=121.21 Aligned_cols=108 Identities=26% Similarity=0.294 Sum_probs=86.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+.++.+|||+|||+|.++..+++..++.++|+|+|+|+.|++.|+++...... ....+++++++|+.......++||
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEcccccCCCCCCCEe
Confidence 67789999999999999999988766667999999999999999877542110 012578999999887655557899
Q ss_pred EEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028016 146 AIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++...++++ ++++.++|||||++++....
T Consensus 148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred EEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 99998877664 46889999999999886543
No 16
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.68 E-value=4.8e-16 Score=113.77 Aligned_cols=103 Identities=25% Similarity=0.407 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC--CCc
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--APY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~ 144 (215)
.++.+|||+|||+|..+..+++..++..+++|+|+++.+++.|++++...+. +++++.++|+.+ ++.. +.|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~-l~~~~~~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIED-LPQELEEKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTC-GCGCSSTTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhc-cccccCCCe
Confidence 3578999999999999999996656678999999999999999999887654 589999999988 4321 789
Q ss_pred cEEEEccCCCC------chHHHHHhcCCCcEEEEEeCC
Q 028016 145 DAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+|++...+++ +++.+.+.|+++|.+++....
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999987654 346789999999999987655
No 17
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.68 E-value=2.8e-15 Score=105.54 Aligned_cols=114 Identities=29% Similarity=0.483 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe
Q 028016 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 131 (215)
Q Consensus 52 ~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~ 131 (215)
..+...+++.+. ..++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...+. .+++++.
T Consensus 5 ~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~ 75 (124)
T TIGR02469 5 REVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGV------SNIVIVE 75 (124)
T ss_pred HHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEe
Confidence 334555666664 5667899999999999999999885 447999999999999999998877543 4788888
Q ss_pred CCCCCCCC-CCCCccEEEEccCCCC---chHHHHHhcCCCcEEEEEe
Q 028016 132 GDGRKGWP-EFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 132 ~d~~~~~~-~~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|...... ..++||.|++...... +++.+.+.|+|||.+++++
T Consensus 76 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 76 GDAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ccccccChhhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 88664222 2268999998875544 6688999999999999875
No 18
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.68 E-value=1.8e-15 Score=118.10 Aligned_cols=113 Identities=19% Similarity=0.368 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..++..+. +.++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++..... .+++++.+|..
T Consensus 35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~ 106 (231)
T TIGR02752 35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAM 106 (231)
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechh
Confidence 45556554 67789999999999999999998876668999999999999999998866443 57899999987
Q ss_pred CCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028016 136 KGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
......++||+|++...++++ ++++.++|+|||++++....
T Consensus 107 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 107 ELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred cCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 654444789999988776553 46788999999999986543
No 19
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.68 E-value=1.7e-16 Score=126.93 Aligned_cols=143 Identities=27% Similarity=0.453 Sum_probs=99.6
Q ss_pred cCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028016 37 VDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
-+..++||.|.|.++ ..+++.+.....++.+|||+|||||.+++..++. |. .+|+++|+++.+++.|++|+..+
T Consensus 134 idPg~AFGTG~H~TT----~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-GA-~~v~a~DiDp~Av~~a~~N~~~N 207 (295)
T PF06325_consen 134 IDPGMAFGTGHHPTT----RLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-GA-KKVVAIDIDPLAVEAARENAELN 207 (295)
T ss_dssp ESTTSSS-SSHCHHH----HHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-TB-SEEEEEESSCHHHHHHHHHHHHT
T ss_pred ECCCCcccCCCCHHH----HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEecCCHHHHHHHHHHHHHc
Confidence 455688999999875 4445555444778899999999999999999987 55 68999999999999999999998
Q ss_pred cccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC---CchHHHHHhcCCCcEEEEEeC--CC--------ceeEEE
Q 028016 117 AAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPVG--NI--------FQDLKV 183 (215)
Q Consensus 117 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~---~~~~~~~~~Lk~gG~lv~~~~--~~--------~~~~~~ 183 (215)
+.. .++.+. . ...... ++||+|+++-... .+...+.++|+|||+|+++-- .. .+.+..
T Consensus 208 ~~~-----~~~~v~--~-~~~~~~-~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~ 278 (295)
T PF06325_consen 208 GVE-----DRIEVS--L-SEDLVE-GKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFEL 278 (295)
T ss_dssp T-T-----TCEEES--C-TSCTCC-S-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEE
T ss_pred CCC-----eeEEEE--E-eccccc-ccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEE
Confidence 875 455442 1 122222 7899999886543 444677889999999999731 10 023555
Q ss_pred EEEcCCCceEE
Q 028016 184 VDKNQDGSLSI 194 (215)
Q Consensus 184 ~~~~~~~~~~~ 194 (215)
.+....+.|..
T Consensus 279 ~~~~~~~~W~~ 289 (295)
T PF06325_consen 279 VEEREEGEWVA 289 (295)
T ss_dssp EEEEEETTEEE
T ss_pred EEEEEECCEEE
Confidence 55555666654
No 20
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.68 E-value=2.1e-16 Score=123.14 Aligned_cols=139 Identities=27% Similarity=0.390 Sum_probs=107.1
Q ss_pred ccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccC
Q 028016 41 MAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120 (215)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 120 (215)
+.+.....+.+|.....++..+. +.||++|||.|+|+|.++..+++.+++.++|+.+|..+...+.|+++++.++..
T Consensus 15 ~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~- 91 (247)
T PF08704_consen 15 LSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD- 91 (247)
T ss_dssp HTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-
T ss_pred HhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-
Confidence 34455677888888999999988 999999999999999999999999999999999999999999999999998875
Q ss_pred cccCCCeEEEeCCCCC-CCCC--CCCccEEEEccCCCC-chHHHHHhc-CCCcEEEEEeCCCceeEEEEEE
Q 028016 121 LLKEGSLSVHVGDGRK-GWPE--FAPYDAIHVGAAAPE-IPQALIDQL-KPGGRMVIPVGNIFQDLKVVDK 186 (215)
Q Consensus 121 ~~~~~~v~~~~~d~~~-~~~~--~~~~D~V~~~~~~~~-~~~~~~~~L-k~gG~lv~~~~~~~~~~~~~~~ 186 (215)
+++++.+.|+.. .+.. ...+|.|+.+.+-++ .++.+.+.| ++||++++-+|+..|....+..
T Consensus 92 ----~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~ 158 (247)
T PF08704_consen 92 ----DNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEA 158 (247)
T ss_dssp ----TTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHH
T ss_pred ----CCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHH
Confidence 689999999853 3321 267999999998876 678899999 8999999998886544443333
No 21
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.68 E-value=2.4e-15 Score=113.25 Aligned_cols=104 Identities=21% Similarity=0.301 Sum_probs=87.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
++++.+|||+|||+|..+..+++.. +..+|+++|.++.+++.+++++...+. .+++++.+|..+... .++||
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~~~~-~~~fD 114 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEEFGQ-EEKFD 114 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhhCCC-CCCcc
Confidence 4568999999999999999999864 558999999999999999999988664 469999999877554 47899
Q ss_pred EEEEccC--CCCchHHHHHhcCCCcEEEEEeCCC
Q 028016 146 AIHVGAA--APEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~--~~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+|++... .+.+++.+.++|+|||.+++..+..
T Consensus 115 lV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 115 VVTSRAVASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred EEEEccccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 9998753 2356678999999999999987653
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=99.67 E-value=1.7e-15 Score=124.55 Aligned_cols=102 Identities=21% Similarity=0.248 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.++.+|||+|||+|..+..+++.++ .+|+|+|+++.+++.++++....+.. +++.++.+|+.......++||+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~~-----~~v~~~~~D~~~~~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGLS-----DKVSFQVADALNQPFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEEcCcccCCCCCCCccE
Confidence 5678999999999999999998753 69999999999999999988765543 5799999998776555589999
Q ss_pred EEEccCCCCc------hHHHHHhcCCCcEEEEEeC
Q 028016 147 IHVGAAAPEI------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 147 V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~ 175 (215)
|++...++++ ++++.++|||||.+++...
T Consensus 190 V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 190 VWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9998887664 3578999999999999654
No 23
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.67 E-value=1.2e-15 Score=116.43 Aligned_cols=121 Identities=28% Similarity=0.399 Sum_probs=95.5
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028016 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
.++.+.+....+..+. +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++...+.. +++
T Consensus 22 ~~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-----~~v 94 (198)
T PRK00377 22 PMTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-----NNI 94 (198)
T ss_pred CCCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CCe
Confidence 3566666555566665 788899999999999999999887666679999999999999999998876532 578
Q ss_pred EEEeCCCCCCCCC-CCCccEEEEccCC---CCchHHHHHhcCCCcEEEEEeC
Q 028016 128 SVHVGDGRKGWPE-FAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 128 ~~~~~d~~~~~~~-~~~~D~V~~~~~~---~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
.++.+|..+..+. .+.||.|++.... ..+++.+.+.|+|||++++...
T Consensus 95 ~~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 95 VLIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred EEEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 8888888654332 2679999986543 4466788899999999998554
No 24
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.66 E-value=1.2e-15 Score=113.73 Aligned_cols=112 Identities=23% Similarity=0.372 Sum_probs=88.6
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+.. .++.+|||+|||+|.++..+++. ++..+++++|+++.+++.+++++..++.. ++++...|..
T Consensus 21 ~lL~~~l~~--~~~~~vLDlG~G~G~i~~~la~~-~~~~~v~~vDi~~~a~~~a~~n~~~n~~~------~v~~~~~d~~ 91 (170)
T PF05175_consen 21 RLLLDNLPK--HKGGRVLDLGCGSGVISLALAKR-GPDAKVTAVDINPDALELAKRNAERNGLE------NVEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHH--HTTCEEEEETSTTSHHHHHHHHT-STCEEEEEEESBHHHHHHHHHHHHHTTCT------TEEEEESSTT
T ss_pred HHHHHHHhh--ccCCeEEEecCChHHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHHHHhcCcc------cccccccccc
Confidence 345555652 26789999999999999999988 46568999999999999999999987753 4999999988
Q ss_pred CCCCCCCCccEEEEccCCCC-----------chHHHHHhcCCCcEEEEEeCCC
Q 028016 136 KGWPEFAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~-----------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+... .++||+|+++++++. +++.+.++|+|||.|++.....
T Consensus 92 ~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 92 EALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp TTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred cccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 7666 389999999998742 3356789999999998766543
No 25
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.65 E-value=5.2e-15 Score=111.93 Aligned_cols=116 Identities=26% Similarity=0.426 Sum_probs=92.0
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028016 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
.++.+.+...+++.+. ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...+. .++
T Consensus 13 ~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~------~~i 83 (187)
T PRK08287 13 PMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC------GNI 83 (187)
T ss_pred CCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC------CCe
Confidence 3556666666667775 6678999999999999999999884 668999999999999999999877553 468
Q ss_pred EEEeCCCCCCCCCCCCccEEEEccCCC---CchHHHHHhcCCCcEEEEEe
Q 028016 128 SVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 128 ~~~~~d~~~~~~~~~~~D~V~~~~~~~---~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+++.+|..... .+.||+|++..... .+++.+.+.|+|||++++..
T Consensus 84 ~~~~~d~~~~~--~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 84 DIIPGEAPIEL--PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EEEecCchhhc--CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence 88888875332 25799999877543 35567889999999999864
No 26
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.65 E-value=4e-15 Score=119.80 Aligned_cols=126 Identities=24% Similarity=0.329 Sum_probs=92.5
Q ss_pred cCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028016 37 VDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
.+..+++|.|.|.+.. .+++.+.....++.+|||+|||+|.++..+++. +. .+++++|+++.+++.+++++..+
T Consensus 132 ldpg~aFgtG~h~tt~----l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g~-~~V~avDid~~al~~a~~n~~~n 205 (288)
T TIGR00406 132 LDPGLAFGTGTHPTTS----LCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-GA-AKVVGIDIDPLAVESARKNAELN 205 (288)
T ss_pred ECCCCcccCCCCHHHH----HHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHc
Confidence 3456778888776543 334444333557899999999999999888875 44 68999999999999999998876
Q ss_pred cccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC---CchHHHHHhcCCCcEEEEEeC
Q 028016 117 AAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 117 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~---~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
+.. ..+.+...+.... . .++||+|+++...+ .++..+.+.|||||+++++..
T Consensus 206 ~~~-----~~~~~~~~~~~~~-~-~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 206 QVS-----DRLQVKLIYLEQP-I-EGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred CCC-----cceEEEecccccc-c-CCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 543 3556666553222 2 36899999987554 355678899999999999753
No 27
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.65 E-value=2.7e-16 Score=119.91 Aligned_cols=132 Identities=20% Similarity=0.338 Sum_probs=102.1
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
-++.+|||+|||.|.++..+|+. | ..|+|+|.++..++.|+....+.++ ++++.+....+.....++||+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-G--a~VtgiD~se~~I~~Ak~ha~e~gv-------~i~y~~~~~edl~~~~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-G--ASVTGIDASEKPIEVAKLHALESGV-------NIDYRQATVEDLASAGGQFDV 127 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-C--CeeEEecCChHHHHHHHHhhhhccc-------cccchhhhHHHHHhcCCCccE
Confidence 36899999999999999999998 4 7999999999999999988777553 456666666655544479999
Q ss_pred EEEccCCCCch------HHHHHhcCCCcEEEEEeCCCc----------------------eeE-------EEEEEcCCCc
Q 028016 147 IHVGAAAPEIP------QALIDQLKPGGRMVIPVGNIF----------------------QDL-------KVVDKNQDGS 191 (215)
Q Consensus 147 V~~~~~~~~~~------~~~~~~Lk~gG~lv~~~~~~~----------------------~~~-------~~~~~~~~~~ 191 (215)
|+|..+++|++ ..+.+++||||.+++++.+.. ... .++.......
T Consensus 128 V~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 128 VTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred EEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence 99999998866 468899999999999876532 111 1222234457
Q ss_pred eEEEeeceEEEeecccC
Q 028016 192 LSIWSETSVRYVPLTSR 208 (215)
Q Consensus 192 ~~~~~~~~~~~~p~~~~ 208 (215)
|.......+.|.|....
T Consensus 208 ~~~~~~~g~~y~p~~~~ 224 (243)
T COG2227 208 LKIIDRKGLTYNPLTNS 224 (243)
T ss_pred ceEEeecceEeccccce
Confidence 77777888888887754
No 28
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.65 E-value=2.3e-15 Score=120.75 Aligned_cols=138 Identities=19% Similarity=0.249 Sum_probs=100.2
Q ss_pred CCCcCCCccccCCcccchhHHHHHHHHHHHhc--CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 028016 34 PPYVDSPMAIGYNATISAPHMHATCLQLLEEN--LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111 (215)
Q Consensus 34 ~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 111 (215)
..+....+.++.+..++.|.....+...+... ..++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.|++
T Consensus 85 ~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~ 163 (284)
T TIGR03533 85 AWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEI 163 (284)
T ss_pred CeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 34444556666666666665333333333211 2345799999999999999999884 55799999999999999999
Q ss_pred HHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC-------------------------------CchHHH
Q 028016 112 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-------------------------------EIPQAL 160 (215)
Q Consensus 112 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~-------------------------------~~~~~~ 160 (215)
++..++.. .++.++.+|+.+..+. ++||+|+++++.. .++..+
T Consensus 164 n~~~~~~~-----~~i~~~~~D~~~~~~~-~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a 237 (284)
T TIGR03533 164 NIERHGLE-----DRVTLIQSDLFAALPG-RKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEA 237 (284)
T ss_pred HHHHcCCC-----CcEEEEECchhhccCC-CCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHH
Confidence 99876653 4789999998665433 5899999986531 123456
Q ss_pred HHhcCCCcEEEEEeCCCc
Q 028016 161 IDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 161 ~~~Lk~gG~lv~~~~~~~ 178 (215)
.++|+|||++++.++...
T Consensus 238 ~~~L~~gG~l~~e~g~~~ 255 (284)
T TIGR03533 238 ADHLNENGVLVVEVGNSM 255 (284)
T ss_pred HHhcCCCCEEEEEECcCH
Confidence 789999999999988643
No 29
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.64 E-value=2.2e-15 Score=113.13 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++.+|||+|||+|..+..++.. ++..+|+++|.++.+++.++++++..+. .+++++.+|+.+.. ..++||+|
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~~~-~~~~fD~I 113 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAEDFQ-HEEQFDVI 113 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhhcc-ccCCccEE
Confidence 3789999999999999999876 4667899999999999999998877654 47999999987743 33789999
Q ss_pred EEccCCCC---chHHHHHhcCCCcEEEEEeCCC
Q 028016 148 HVGAAAPE---IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 148 ~~~~~~~~---~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+++. +.+ +.+.+.++|+|||.+++..+..
T Consensus 114 ~s~~-~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 145 (181)
T TIGR00138 114 TSRA-LASLNVLLELTLNLLKVGGYFLAYKGKK 145 (181)
T ss_pred Eehh-hhCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 9986 433 4467889999999999987643
No 30
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=3.9e-15 Score=117.20 Aligned_cols=109 Identities=31% Similarity=0.362 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028016 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
....+++.+. ++||++|||||||.|.+++.+|+..+ .+|+|+++|++..+.+++++...+.. .++++...|
T Consensus 60 k~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~-----~~v~v~l~d 130 (283)
T COG2230 60 KLDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLE-----DNVEVRLQD 130 (283)
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCC-----cccEEEecc
Confidence 3445566665 89999999999999999999999974 79999999999999999999988775 689999999
Q ss_pred CCCCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEEe
Q 028016 134 GRKGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+.. +.||.|++...+++ +++.+.++|+|||.+++-+
T Consensus 131 ~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 131 YRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 87765 34999999998765 4467899999999998744
No 31
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.63 E-value=2.9e-15 Score=119.21 Aligned_cols=107 Identities=27% Similarity=0.315 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+. +++|.+|||||||.|.++..+++..| .+|+|+.+|+...+.+++++...++. +++++...|.
T Consensus 51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~-----~~v~v~~~D~ 121 (273)
T PF02353_consen 51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLE-----DRVEVRLQDY 121 (273)
T ss_dssp HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSS-----STEEEEES-G
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEEeec
Confidence 444555554 89999999999999999999999974 79999999999999999999988765 6899999998
Q ss_pred CCCCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEE
Q 028016 135 RKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIP 173 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~ 173 (215)
.+.. .+||.|++...++++ ++.+.++|||||.+++.
T Consensus 122 ~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 122 RDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp GG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred cccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 7643 389999999988765 46788999999999874
No 32
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.63 E-value=4.1e-15 Score=117.86 Aligned_cols=104 Identities=23% Similarity=0.326 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ..++.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.+++ .+++++.+|+.
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~-------------~~~~~~~~d~~ 82 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARE-------------RGVDARTGDVR 82 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh-------------cCCcEEEcChh
Confidence 45566654 5677899999999999999999885 55799999999999999864 25678889887
Q ss_pred CCCCCCCCccEEEEccCCCCch------HHHHHhcCCCcEEEEEeCC
Q 028016 136 KGWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~~------~~~~~~Lk~gG~lv~~~~~ 176 (215)
... ..++||+|+++..++++. +++.+.|||||.+++.+++
T Consensus 83 ~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 83 DWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 553 337899999999887654 5788999999999997654
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=8e-15 Score=111.76 Aligned_cols=105 Identities=18% Similarity=0.133 Sum_probs=82.3
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ..++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.++++....+. .++++..+|+.
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~ 88 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLN 88 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChh
Confidence 34445554 4456899999999999999999873 6899999999999999988876543 46888888886
Q ss_pred CCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEE
Q 028016 136 KGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~ 172 (215)
..... ++||+|++...+++ +++.+.++|+|||++++
T Consensus 89 ~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 89 NLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 64443 67999999887643 33578899999999654
No 34
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.62 E-value=2.6e-15 Score=100.53 Aligned_cols=89 Identities=27% Similarity=0.448 Sum_probs=73.4
Q ss_pred EEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccC
Q 028016 73 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA 152 (215)
Q Consensus 73 LdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~ 152 (215)
||+|||+|..+..+++. + ..+++++|+++.+++.++++... .++.+..+|........++||+|++...
T Consensus 1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l~~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDLPFPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSSSS-TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhCccccccccccccccc
Confidence 89999999999999998 2 38999999999999999987654 4566999999887666689999999998
Q ss_pred CCCc------hHHHHHhcCCCcEEEE
Q 028016 153 APEI------PQALIDQLKPGGRMVI 172 (215)
Q Consensus 153 ~~~~------~~~~~~~Lk~gG~lv~ 172 (215)
++++ ++++.++|||||++++
T Consensus 70 ~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 70 LHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 8765 3678999999999986
No 35
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.62 E-value=3.6e-15 Score=121.08 Aligned_cols=102 Identities=22% Similarity=0.273 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++.+|||+|||+|.++..+++. + .+|+|+|.++.+++.|+++....... .++.++++++.+.....++||+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g--~~V~GID~s~~~i~~Ar~~~~~~~~~-----~~i~~~~~dae~l~~~~~~FD~V 202 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-G--ATVTGVDAVDKNVKIARLHADMDPVT-----STIEYLCTTAEKLADEGRKFDAV 202 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHhcCcc-----cceeEEecCHHHhhhccCCCCEE
Confidence 4679999999999999999875 3 68999999999999999876543221 47899999887654444789999
Q ss_pred EEccCCCCc------hHHHHHhcCCCcEEEEEeCCC
Q 028016 148 HVGAAAPEI------PQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 148 ~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
++...++++ ++++.++|||||.+++++.+.
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 999988765 367899999999999987654
No 36
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.61 E-value=1.4e-14 Score=114.26 Aligned_cols=103 Identities=17% Similarity=0.285 Sum_probs=83.8
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
.+.++.+|||+|||+|..+..+++.+ .+..+++++|+|+.|++.|++++...+.. .+++++.+|+.+... ..
T Consensus 53 ~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-----~~v~~~~~d~~~~~~--~~ 125 (247)
T PRK15451 53 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-----TPVDVIEGDIRDIAI--EN 125 (247)
T ss_pred hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-----CCeEEEeCChhhCCC--CC
Confidence 35678899999999999999888753 35689999999999999999998775543 478999999876543 45
Q ss_pred ccEEEEccCCCC--------chHHHHHhcCCCcEEEEEe
Q 028016 144 YDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 144 ~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+|+++..+++ +++++.+.|||||.|++..
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999998876654 4467899999999999964
No 37
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.61 E-value=1.1e-14 Score=115.55 Aligned_cols=107 Identities=20% Similarity=0.289 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+. ..++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.+++++ .++.+..+|+
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----------~~~~~~~~d~ 85 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----------PDCQFVEADI 85 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----------CCCeEEECch
Confidence 345555554 5677899999999999999999885 4579999999999999998753 4678888888
Q ss_pred CCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028016 135 RKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
....+. ++||+|+++..++++ ++++.+.|||||.+++.+++
T Consensus 86 ~~~~~~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 86 ASWQPP-QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred hccCCC-CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 654433 689999999988654 35788999999999998754
No 38
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.61 E-value=1.4e-14 Score=114.39 Aligned_cols=117 Identities=30% Similarity=0.471 Sum_probs=84.9
Q ss_pred CCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcc
Q 028016 39 SPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118 (215)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 118 (215)
..++++.|.+.+. ..+++.+.....++.+|||+|||+|.++..+++. +. .+++++|+|+.+++.|++++..++.
T Consensus 94 p~~afgtg~h~tt----~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~~ 167 (250)
T PRK00517 94 PGMAFGTGTHPTT----RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNGV 167 (250)
T ss_pred CCCccCCCCCHHH----HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCC
Confidence 3456777776553 3344444433567899999999999999887765 54 4699999999999999999877553
Q ss_pred cCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC---CchHHHHHhcCCCcEEEEEe
Q 028016 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 119 ~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~---~~~~~~~~~Lk~gG~lv~~~ 174 (215)
. ..+.+..++ .+||+|+++...+ .+.+.+.++|||||.++++.
T Consensus 168 ~-----~~~~~~~~~--------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 168 E-----LNVYLPQGD--------LKADVIVANILANPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred C-----ceEEEccCC--------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 233333322 2799999876543 34567889999999999974
No 39
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.61 E-value=9.2e-15 Score=115.85 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-CCCCCcc
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D 145 (215)
.++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.|++++...+.. .+++++++++.+.. ...++||
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~-----~~v~~~~~d~~~l~~~~~~~fD 114 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVS-----DNMQFIHCAAQDIAQHLETPVD 114 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCc-----cceEEEEcCHHHHhhhcCCCCC
Confidence 446799999999999999999873 78999999999999999998776543 57899999886542 2237899
Q ss_pred EEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028016 146 AIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++...++++ ++++.++|||||.+++...+
T Consensus 115 ~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 115 LILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred EEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 99999877544 46789999999999887554
No 40
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.61 E-value=2.6e-14 Score=108.94 Aligned_cols=123 Identities=25% Similarity=0.397 Sum_probs=93.3
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCC
Q 028016 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 125 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 125 (215)
+..++.+.+...++..+. ..++.+|||+|||+|.++..+++. .+..+++++|+++.+++.+++++...+. .
T Consensus 20 ~~p~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~-~~~~~V~~vD~s~~~~~~a~~n~~~~~~------~ 90 (196)
T PRK07402 20 GIPLTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLL-CPKGRVIAIERDEEVVNLIRRNCDRFGV------K 90 (196)
T ss_pred CCCCCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCC------C
Confidence 444566665556677765 678899999999999999999876 3558999999999999999999887654 4
Q ss_pred CeEEEeCCCCCCCCC-CCCccEEEEccC--CCCchHHHHHhcCCCcEEEEEeCCC
Q 028016 126 SLSVHVGDGRKGWPE-FAPYDAIHVGAA--APEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 126 ~v~~~~~d~~~~~~~-~~~~D~V~~~~~--~~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+++++.+|+.+.... ...+|.++.... +..+++.+.+.|+|||++++..++.
T Consensus 91 ~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 91 NVEVIEGSAPECLAQLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CeEEEECchHHHHhhCCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 789999887543221 134677766543 2356688899999999999987653
No 41
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.60 E-value=8e-15 Score=124.72 Aligned_cols=149 Identities=15% Similarity=0.230 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028016 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
+...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+|+.+++.|++++..++. .+++++.+|
T Consensus 285 l~~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d 353 (443)
T PRK13168 285 MVARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL------DNVTFYHAN 353 (443)
T ss_pred HHHHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeC
Confidence 3444455443 5677899999999999999999874 6899999999999999999887654 479999999
Q ss_pred CCCCCC----CCCCccEEEEccCCCCchHHH--HHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeeccc
Q 028016 134 GRKGWP----EFAPYDAIHVGAAAPEIPQAL--IDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTS 207 (215)
Q Consensus 134 ~~~~~~----~~~~~D~V~~~~~~~~~~~~~--~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 207 (215)
+.+... ..++||+|+++++.....+.+ ...++|++.++++++... ..+.+....+..|.......+.+.|.|+
T Consensus 354 ~~~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~t-laRDl~~L~~~gY~l~~i~~~DmFP~T~ 432 (443)
T PRK13168 354 LEEDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVSCNPAT-LARDAGVLVEAGYRLKRAGMLDMFPHTG 432 (443)
T ss_pred hHHhhhhhhhhcCCCCEEEECcCCcChHHHHHHHHhcCCCeEEEEEeChHH-hhccHHHHhhCCcEEEEEEEeccCCCCC
Confidence 865432 225799999998875443322 233689999999875532 3444444446679999999999999999
Q ss_pred CccccCC
Q 028016 208 RDAQLRG 214 (215)
Q Consensus 208 ~~~~~~~ 214 (215)
+.+.+..
T Consensus 433 HvE~v~l 439 (443)
T PRK13168 433 HVESMAL 439 (443)
T ss_pred cEEEEEE
Confidence 9987653
No 42
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.60 E-value=2.8e-14 Score=115.56 Aligned_cols=136 Identities=19% Similarity=0.245 Sum_probs=98.3
Q ss_pred CCcCCCccccCCcccchhHHHHHHHHHHHhcCC--CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 028016 35 PYVDSPMAIGYNATISAPHMHATCLQLLEENLK--PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 35 ~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
.+....+.++.+..++.|.....+...+..... +..+|||+|||+|.++..+++.. +..+++++|+|+.+++.|+++
T Consensus 98 ~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n 176 (307)
T PRK11805 98 WFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEIN 176 (307)
T ss_pred eEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHH
Confidence 333444555666666666543333333321122 22689999999999999999884 557999999999999999999
Q ss_pred HHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC-------------------------------CchHHHH
Q 028016 113 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-------------------------------EIPQALI 161 (215)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~-------------------------------~~~~~~~ 161 (215)
+...+.. .+++++.+|+.+..+. ++||+|+++++.- .+++.+.
T Consensus 177 ~~~~~l~-----~~i~~~~~D~~~~l~~-~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~ 250 (307)
T PRK11805 177 IERHGLE-----DRVTLIESDLFAALPG-RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAP 250 (307)
T ss_pred HHHhCCC-----CcEEEEECchhhhCCC-CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHH
Confidence 9876643 4699999998665543 5899999986531 1234567
Q ss_pred HhcCCCcEEEEEeCCC
Q 028016 162 DQLKPGGRMVIPVGNI 177 (215)
Q Consensus 162 ~~Lk~gG~lv~~~~~~ 177 (215)
++|+|||.+++.++..
T Consensus 251 ~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 251 DYLTEDGVLVVEVGNS 266 (307)
T ss_pred HhcCCCCEEEEEECcC
Confidence 8999999999988765
No 43
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.60 E-value=2.2e-14 Score=114.70 Aligned_cols=102 Identities=30% Similarity=0.452 Sum_probs=85.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+.++.+|||+|||+|..+..+++..++.++++++|+++.+++.|+++....+. .++++..+|+.......+.||
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhhCCCCCCcee
Confidence 67889999999999999888888777767899999999999999998876543 578899999876544446899
Q ss_pred EEEEccCCCC------chHHHHHhcCCCcEEEEE
Q 028016 146 AIHVGAAAPE------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+++..+++ +++++.++|||||++++.
T Consensus 149 ~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 149 VIISNCVINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 9998876543 457889999999999985
No 44
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.59 E-value=2.4e-14 Score=108.97 Aligned_cols=105 Identities=19% Similarity=0.227 Sum_probs=79.3
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ..++.+|||+|||+|..+..+++. + .+|+++|+|+.+++.++++....+. ++.+...|..
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~-g--~~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~ 87 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA-G--YDVRAWDHNPASIASVLDMKARENL-------PLRTDAYDIN 87 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccch
Confidence 45555554 445679999999999999999986 3 6899999999999999888765442 3566667765
Q ss_pred CCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEE
Q 028016 136 KGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~ 173 (215)
..... ++||+|++...+++ +++.+.++|+|||++++.
T Consensus 88 ~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 88 AAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred hcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 43333 57999999877654 335788999999986553
No 45
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.59 E-value=5.7e-15 Score=110.40 Aligned_cols=107 Identities=24% Similarity=0.402 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028016 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.++..+. +....+|.|+|||+|..+..++++. |...++|+|.|++|++.|++++ .+.+|..+|+..
T Consensus 21 dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~ 86 (257)
T COG4106 21 DLLARVP--LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRT 86 (257)
T ss_pred HHHhhCC--ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhh
Confidence 3344443 5556899999999999999999997 6689999999999999998764 688999999877
Q ss_pred CCCCCCCccEEEEccCCCCch------HHHHHhcCCCcEEEEEeCCCc
Q 028016 137 GWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~------~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
.-+. .+.|+++++.+++.++ ..+...|.|||+|.+..|++.
T Consensus 87 w~p~-~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 87 WKPE-QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred cCCC-CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 5444 7899999999987655 578899999999999888764
No 46
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.59 E-value=3.2e-14 Score=117.58 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=87.3
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028016 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+++.+. ...+.+|||+|||+|.++..+++. .|..+++++|.|+.+++.+++++..+... ...++++...|...
T Consensus 219 llL~~lp--~~~~~~VLDLGCGtGvi~i~la~~-~P~~~V~~vD~S~~Av~~A~~N~~~n~~~---~~~~v~~~~~D~l~ 292 (378)
T PRK15001 219 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDK-NPQAKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNALS 292 (378)
T ss_pred HHHHhCC--cccCCeEEEEeccccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCcc---cCceEEEEEccccc
Confidence 3444443 233469999999999999999988 46689999999999999999998765421 11367888888866
Q ss_pred CCCCCCCccEEEEccCCCC-----------chHHHHHhcCCCcEEEEEeCC
Q 028016 137 GWPEFAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~-----------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.... ++||+|+++++++. ++..+.++|+|||.|++..+.
T Consensus 293 ~~~~-~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 293 GVEP-FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred cCCC-CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 5433 68999999988753 335678899999999998644
No 47
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.58 E-value=2.6e-14 Score=113.57 Aligned_cols=109 Identities=22% Similarity=0.186 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+. +.++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++.. ..++.+..+|+
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~ 108 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDI 108 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCc
Confidence 556666665 78889999999999999998887642 6899999999999999987643 15789999998
Q ss_pred CCCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEEeC
Q 028016 135 RKGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~~ 175 (215)
.......++||+|++...+.+ +++++.++|||||+++++..
T Consensus 109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 765444478999998665433 34678899999999998643
No 48
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.58 E-value=2.3e-14 Score=109.66 Aligned_cols=103 Identities=23% Similarity=0.259 Sum_probs=83.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC-CCCC--CCCCCc
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RKGW--PEFAPY 144 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~~ 144 (215)
++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...+. .++.++++|+ .... ...++|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~ 112 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVEVLLDMFPDGSL 112 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHHHHHHHcCcccc
Confidence 57899999999999999999875 557899999999999999998876543 5799999998 4322 233789
Q ss_pred cEEEEccCC--------------CCchHHHHHhcCCCcEEEEEeCCC
Q 028016 145 DAIHVGAAA--------------PEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~--------------~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|.|++..+. ..+++++.++|||||.+++.+++.
T Consensus 113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 999886543 225678899999999999987664
No 49
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.58 E-value=3e-14 Score=112.64 Aligned_cols=106 Identities=19% Similarity=0.239 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+. ..+..+|||+|||+|.++..+++. + .+++++|+|+.+++.++++.. ...++.+|+
T Consensus 31 a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~~~D~s~~~l~~a~~~~~-----------~~~~~~~d~ 94 (251)
T PRK10258 31 ADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER-G--SQVTALDLSPPMLAQARQKDA-----------ADHYLAGDI 94 (251)
T ss_pred HHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc-C--CeEEEEECCHHHHHHHHhhCC-----------CCCEEEcCc
Confidence 444555554 345679999999999999888875 3 789999999999999987532 345778888
Q ss_pred CCCCCCCCCccEEEEccCCCC------chHHHHHhcCCCcEEEEEeCC
Q 028016 135 RKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.......++||+|+++..+++ ++.++.++|+|||.+++++..
T Consensus 95 ~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 95 ESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred ccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 765444478999999887654 356889999999999998754
No 50
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.57 E-value=1.1e-13 Score=108.61 Aligned_cols=102 Identities=16% Similarity=0.229 Sum_probs=83.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
..++.+|||+|||+|..+..+++.+. +..+++++|+|+.+++.|++++...... .+++++.+|+..... ..+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~--~~~ 123 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-----IPVEILCNDIRHVEI--KNA 123 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-----CCeEEEECChhhCCC--CCC
Confidence 45778999999999999999998752 4589999999999999999988764332 478999999876543 358
Q ss_pred cEEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028016 145 DAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 145 D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
|+|++...++++ ++++.+.|+|||.+++..
T Consensus 124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 999988877654 357889999999999974
No 51
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.57 E-value=9.2e-14 Score=115.23 Aligned_cols=136 Identities=18% Similarity=0.229 Sum_probs=99.0
Q ss_pred CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 028016 33 TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 33 ~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
...|.+..+..+.+..++.|. ...+++.+...+.++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.|+++
T Consensus 217 ~~~F~G~~f~V~p~vLIPRpe-TE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreN 294 (423)
T PRK14966 217 VREFYGRRFAVNPNVLIPRPE-TEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKN 294 (423)
T ss_pred eeeecCcEEEeCCCccCCCcc-HHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHH
Confidence 344555566666677666665 344444433235566799999999999999998874 557999999999999999999
Q ss_pred HHhhcccCcccCCCeEEEeCCCCCCC-CCCCCccEEEEccCCC-------------------------------CchHHH
Q 028016 113 IEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYDAIHVGAAAP-------------------------------EIPQAL 160 (215)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~V~~~~~~~-------------------------------~~~~~~ 160 (215)
+...+ .+++++++|+.+.. +..++||+|+++++.- .+.+.+
T Consensus 295 a~~~g-------~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a 367 (423)
T PRK14966 295 AADLG-------ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGA 367 (423)
T ss_pred HHHcC-------CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHH
Confidence 87653 37899999986532 2235799999998641 112345
Q ss_pred HHhcCCCcEEEEEeCCC
Q 028016 161 IDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 161 ~~~Lk~gG~lv~~~~~~ 177 (215)
.+.|+|||.+++.++..
T Consensus 368 ~~~LkpgG~lilEiG~~ 384 (423)
T PRK14966 368 PDRLAEGGFLLLEHGFD 384 (423)
T ss_pred HHhcCCCcEEEEEECcc
Confidence 67899999999987653
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.57 E-value=3.7e-14 Score=106.57 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=80.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++..++ .++++..+|..... . ++||
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~-~-~~fD 84 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNN-------VGLDVVMTDLFKGV-R-GKFD 84 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcC-------CceEEEEccccccc-C-Cccc
Confidence 4456789999999999999999873 389999999999999999987643 25788888876643 2 5899
Q ss_pred EEEEccCCC---------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028016 146 AIHVGAAAP---------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~---------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+|+++.++. .+++++.++|+|||.+++..+..
T Consensus 85 ~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 85 VILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred EEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 999997653 13456789999999999876543
No 53
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.56 E-value=8.8e-14 Score=110.65 Aligned_cols=106 Identities=25% Similarity=0.313 Sum_probs=86.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
++++.+|||+|||+|..+..++..+++.+.|+++|+++.+++.+++++...+. .++.+...|........+.||
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------LNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEecCCHHHhhhhccCCC
Confidence 67889999999999999999999876667999999999999999999988664 478899888765433335699
Q ss_pred EEEEccCCCC----------------------------chHHHHHhcCCCcEEEEEeCCC
Q 028016 146 AIHVGAAAPE----------------------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~~----------------------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.|+++.++.. +++.+.++|||||+|+++++..
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999876421 3346778999999999988653
No 54
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.56 E-value=2.4e-14 Score=111.80 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+. ...+..+|||+|||+|+.+..++..+++.++++++|+++.+++.|++++...+.. ++++++.+|+
T Consensus 56 ~g~~L~~l~-~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-----~~i~~~~gda 129 (234)
T PLN02781 56 EGLFLSMLV-KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-----HKINFIQSDA 129 (234)
T ss_pred HHHHHHHHH-HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEccH
Confidence 455555554 2555789999999999999999988766789999999999999999999988764 6899999998
Q ss_pred CCCCC------CCCCccEEEEccCC---CCchHHHHHhcCCCcEEEE
Q 028016 135 RKGWP------EFAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 135 ~~~~~------~~~~~D~V~~~~~~---~~~~~~~~~~Lk~gG~lv~ 172 (215)
.+... ..++||+|+++..- ..+.+.+.++|+|||.+++
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 76432 13689999999653 4556788999999999887
No 55
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.56 E-value=1.1e-14 Score=101.61 Aligned_cols=101 Identities=27% Similarity=0.302 Sum_probs=82.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCCccE
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~ 146 (215)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.+++++...+.. .+++++++|..... ...++||+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~D~ 73 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLD-----DRVEVIVGDARDLPEPLPDGKFDL 73 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTT-----TTEEEEESHHHHHHHTCTTT-EEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCC-----ceEEEEECchhhchhhccCceeEE
Confidence 4689999999999999999884 489999999999999999998886653 67999999987643 33489999
Q ss_pred EEEccCCCC--------------chHHHHHhcCCCcEEEEEeCC
Q 028016 147 IHVGAAAPE--------------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 147 V~~~~~~~~--------------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|++++++.. +.+.+.++|+|||.+++.+++
T Consensus 74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999998753 246788999999999997763
No 56
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=9.9e-14 Score=109.65 Aligned_cols=111 Identities=24% Similarity=0.270 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ...+.+|||+|||.|.+++.+++. .|..+++.+|.+..+++.+++++..++. ++..+...|..
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~-~p~~~vtmvDvn~~Av~~ar~Nl~~N~~------~~~~v~~s~~~ 218 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKK-SPQAKLTLVDVNARAVESARKNLAANGV------ENTEVWASNLY 218 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHh-CCCCeEEEEecCHHHHHHHHHhHHHcCC------CccEEEEeccc
Confidence 34455554 444559999999999999999999 4678999999999999999999998765 34467777776
Q ss_pred CCCCCCCCccEEEEccCCCC-----------chHHHHHhcCCCcEEEEEeCCC
Q 028016 136 KGWPEFAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~-----------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+... ++||.|+++++++. ++..+.++|++||.|.+.....
T Consensus 219 ~~v~--~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~ 269 (300)
T COG2813 219 EPVE--GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH 269 (300)
T ss_pred cccc--ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC
Confidence 6555 38999999999863 4456789999999999987643
No 57
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.55 E-value=1.1e-13 Score=110.61 Aligned_cols=98 Identities=21% Similarity=0.207 Sum_probs=79.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCC--CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQ--GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+..+|||+|||+|.++..+++.++.. .+++|+|+|+.+++.|+++. .++.+..+|........++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCcee
Confidence 45789999999999999998875321 37999999999999987642 467888888876555557899
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEEeCCC
Q 028016 146 AIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+|++... +...+++.++|||||++++..++.
T Consensus 154 ~I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 154 AIIRIYA-PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EEEEecC-CCCHHHHHhhccCCCEEEEEeCCC
Confidence 9998765 456789999999999999988764
No 58
>PRK08317 hypothetical protein; Provisional
Probab=99.55 E-value=1.9e-13 Score=106.91 Aligned_cols=112 Identities=25% Similarity=0.398 Sum_probs=88.7
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. +.++.+|||+|||+|..+..+++.+++.++++++|+++.+++.++++.... ..++.+..+|..
T Consensus 9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~ 79 (241)
T PRK08317 9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEecccc
Confidence 44555554 778899999999999999999988766689999999999999998873221 157888888877
Q ss_pred CCCCCCCCccEEEEccCCCC------chHHHHHhcCCCcEEEEEeCC
Q 028016 136 KGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
......+.||+|++...+++ +++++.++|+|||.+++..+.
T Consensus 80 ~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 80 GLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred cCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 64444478999999877654 446889999999999987654
No 59
>PRK14967 putative methyltransferase; Provisional
Probab=99.55 E-value=2.3e-13 Score=105.70 Aligned_cols=101 Identities=25% Similarity=0.351 Sum_probs=80.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..+++. +. .+++++|+++.+++.+++++...+. ++.++.+|+...... ++||
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~-~~v~~vD~s~~~l~~a~~n~~~~~~-------~~~~~~~d~~~~~~~-~~fD 103 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GA-GSVTAVDISRRAVRSARLNALLAGV-------DVDVRRGDWARAVEF-RPFD 103 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHhCC-------eeEEEECchhhhccC-CCee
Confidence 567789999999999999998876 33 5899999999999999998876542 577888888664433 6899
Q ss_pred EEEEccCCCC---------------------------chHHHHHhcCCCcEEEEEeCC
Q 028016 146 AIHVGAAAPE---------------------------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~---------------------------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++.+... +++.+.++||+||.+++...+
T Consensus 104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999865321 335678999999999986544
No 60
>PRK04266 fibrillarin; Provisional
Probab=99.55 E-value=2e-13 Score=105.87 Aligned_cols=114 Identities=22% Similarity=0.262 Sum_probs=85.0
Q ss_pred HHHHHHHHHH-HhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe
Q 028016 53 HMHATCLQLL-EENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 131 (215)
Q Consensus 53 ~~~~~~l~~l-~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~ 131 (215)
.....++..+ ...+.++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+.+++... .++.++.
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--------~nv~~i~ 126 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--------KNIIPIL 126 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--------CCcEEEE
Confidence 3344555433 11377899999999999999999999874 579999999999999877665432 4788888
Q ss_pred CCCCCCC---CCCCCccEEEEccCCCC----chHHHHHhcCCCcEEEEEeC
Q 028016 132 GDGRKGW---PEFAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 132 ~d~~~~~---~~~~~~D~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~~ 175 (215)
+|..... .-.++||+|+++...++ +++++.++|||||.++++++
T Consensus 127 ~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 127 ADARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CCCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 8876421 11256999998765432 35788899999999999644
No 61
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.55 E-value=4.6e-14 Score=109.32 Aligned_cols=113 Identities=24% Similarity=0.288 Sum_probs=90.4
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028016 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
-++..+. .+....+|||+|||+|.+++.++++. +..+++++|+++.+.+.|.++++.+.+. ++++++++|+..
T Consensus 34 iLL~~~~-~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~-----~ri~v~~~Di~~ 106 (248)
T COG4123 34 ILLAAFA-PVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLE-----ERIQVIEADIKE 106 (248)
T ss_pred HHHHhhc-ccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcch-----hceeEehhhHHH
Confidence 3344443 24457899999999999999999985 4489999999999999999999987776 899999999987
Q ss_pred CCC--CCCCccEEEEccCCC------------------------CchHHHHHhcCCCcEEEEEeCC
Q 028016 137 GWP--EFAPYDAIHVGAAAP------------------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 137 ~~~--~~~~~D~V~~~~~~~------------------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
... ...+||+|+|++++- .+.+.+.++||+||.+.+..+.
T Consensus 107 ~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 107 FLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred hhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 544 225799999999761 1224577899999999997654
No 62
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.55 E-value=1.6e-13 Score=110.34 Aligned_cols=135 Identities=21% Similarity=0.321 Sum_probs=96.1
Q ss_pred CCcCCCccccCCcccchhH---HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 028016 35 PYVDSPMAIGYNATISAPH---MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111 (215)
Q Consensus 35 ~y~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 111 (215)
.|....+..+.+..++.|. ++...+..+. ...+..+|||+|||+|.++..++... +..+++++|+|+.+++.|++
T Consensus 79 ~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~-~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~ 156 (284)
T TIGR00536 79 EFYGLEFFVNEHVLIPRPETEELVEKALASLI-SQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEE 156 (284)
T ss_pred eEcCeEEEECCCCcCCCCccHHHHHHHHHHhh-hcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 3334445555555555544 2333333322 12223689999999999999999885 55799999999999999999
Q ss_pred HHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC-------------------------------CchHHH
Q 028016 112 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-------------------------------EIPQAL 160 (215)
Q Consensus 112 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~-------------------------------~~~~~~ 160 (215)
++..++.. .++.++.+|+.+.... .+||+|+++++.. .+++.+
T Consensus 157 n~~~~~~~-----~~v~~~~~d~~~~~~~-~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a 230 (284)
T TIGR00536 157 NAEKNQLE-----HRVEFIQSNLFEPLAG-QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELA 230 (284)
T ss_pred HHHHcCCC-----CcEEEEECchhccCcC-CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHH
Confidence 98876542 3599999998765443 4899999986431 122456
Q ss_pred HHhcCCCcEEEEEeCCC
Q 028016 161 IDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 161 ~~~Lk~gG~lv~~~~~~ 177 (215)
.++|+|||++++.++..
T Consensus 231 ~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 231 PDYLKPNGFLVCEIGNW 247 (284)
T ss_pred HHhccCCCEEEEEECcc
Confidence 78999999999998864
No 63
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.54 E-value=1e-13 Score=117.30 Aligned_cols=106 Identities=21% Similarity=0.302 Sum_probs=87.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-CCCCCc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~ 144 (215)
+.++.+|||+|||+|..+..++..+++.++++++|+++.+++.+++++...+. .++.+..+|..... ...++|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhhhhhhhhccC
Confidence 67889999999999999999999876668999999999999999999988664 46889999986543 123679
Q ss_pred cEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028016 145 DAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|.|+++.++. .+++.+.+.|||||.|++++++.
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9999987662 12346788999999999998764
No 64
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.54 E-value=5.2e-14 Score=114.75 Aligned_cols=135 Identities=16% Similarity=0.057 Sum_probs=104.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccE
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~ 146 (215)
++.+|||+|||+|.++..+++.. .+|+++|.++.+++.|++++..++. .+++++.+|+.+... ..+.||+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~~~~~~~~~D~ 243 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQFATAQGEVPDL 243 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHHHHhcCCCCeE
Confidence 46899999999999999999863 6899999999999999999987664 479999999865432 2257999
Q ss_pred EEEccCCCCchHHH---HHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccCccccCC
Q 028016 147 IHVGAAAPEIPQAL---IDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 214 (215)
Q Consensus 147 V~~~~~~~~~~~~~---~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 214 (215)
|+++++-..+.+.+ ...++|++.++++++.... .+.+... ..|.......+.+.|.|++.|.+..
T Consensus 244 Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~-~rd~~~l--~~y~~~~~~~~DmFP~T~HvE~v~~ 311 (315)
T PRK03522 244 VLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTM-AKDLAHL--PGYRIERVQLFDMFPHTAHYEVLTL 311 (315)
T ss_pred EEECCCCCCccHHHHHHHHHcCCCeEEEEECCcccc-hhHHhhc--cCcEEEEEEEeccCCCCCeEEEEEE
Confidence 99998866554443 3445777777777665432 2333333 4799999999999999999987653
No 65
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.54 E-value=8.3e-14 Score=105.94 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=84.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCCCCc
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFAPY 144 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~ 144 (215)
...++||+|||+|.++..+++.. ++..++|+|+++.+++.|++++...+. .++.++++|+.... ...+.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHhhCCCCce
Confidence 45699999999999999999884 668999999999999999998877554 58999999986532 233589
Q ss_pred cEEEEccCCC--------------CchHHHHHhcCCCcEEEEEeCCC
Q 028016 145 DAIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~~--------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|.|+++.+.+ .+++.+.++|||||.|++.+.+.
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 9999886543 25678899999999999987664
No 66
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.53 E-value=1.4e-13 Score=118.26 Aligned_cols=109 Identities=24% Similarity=0.307 Sum_probs=86.8
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. +.++.+|||+|||+|..+..+++..+ .+++|+|+|+.+++.|+++..... .++.+..+|..
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~-------~~v~~~~~d~~ 324 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRK-------CSVEFEVADCT 324 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCC-------CceEEEEcCcc
Confidence 44555554 56788999999999999999988753 689999999999999988764321 47899999987
Q ss_pred CCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeC
Q 028016 136 KGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~ 175 (215)
......++||+|++...+.++ ++++.++|||||.+++...
T Consensus 325 ~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 325 KKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred cCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 654444789999998887654 4678999999999998753
No 67
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=2.6e-13 Score=115.51 Aligned_cols=105 Identities=25% Similarity=0.341 Sum_probs=86.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++.++..++++++|+++.+++.+++++...+. .+++++.+|+....+. ++||
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~~~~-~~fD 320 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSFSPE-EQPD 320 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCcccccccC-CCCC
Confidence 66789999999999999999998875557999999999999999999988664 4789999998765433 6899
Q ss_pred EEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028016 146 AIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+|+++.++. .++..+.+.|||||+|++++++.
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999876541 13456788999999999998764
No 68
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.53 E-value=3e-13 Score=106.80 Aligned_cols=101 Identities=23% Similarity=0.369 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
.+.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...+. .++.++.+|+.+.... ++||+|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~-~~fD~V 158 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFEPLPG-GKFDLI 158 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhccCcC-CceeEE
Confidence 34699999999999999999885 457999999999999999999877554 4789999998765433 789999
Q ss_pred EEccCCC--------------------------------CchHHHHHhcCCCcEEEEEeCC
Q 028016 148 HVGAAAP--------------------------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 148 ~~~~~~~--------------------------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
++++++. .+++.+.++|+|||.+++.++.
T Consensus 159 i~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 159 VSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred EECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 9987642 1235677899999999998754
No 69
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.53 E-value=2e-13 Score=112.01 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=84.6
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. .....+|||+|||+|.++..+++. .+..+++++|+++.+++.+++++..++. ..++..+|..
T Consensus 186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~-~p~~~v~~vDis~~Al~~A~~nl~~n~l-------~~~~~~~D~~ 255 (342)
T PRK09489 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARH-SPKIRLTLSDVSAAALESSRATLAANGL-------EGEVFASNVF 255 (342)
T ss_pred HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC-------CCEEEEcccc
Confidence 34455454 233468999999999999999988 4657899999999999999999987653 3466777765
Q ss_pred CCCCCCCCccEEEEccCCCC-----------chHHHHHhcCCCcEEEEEeCC
Q 028016 136 KGWPEFAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~-----------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
... .++||+|+++++++. ++..+.++|+|||.|++..+.
T Consensus 256 ~~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 256 SDI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 533 368999999998864 335678999999999997765
No 70
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.53 E-value=1.4e-13 Score=118.55 Aligned_cols=137 Identities=12% Similarity=0.231 Sum_probs=99.9
Q ss_pred CCCCcCCCccccCCcccchhHHH---HHHHHHHHhc----------------------CCCCCEEEEEcCCccHHHHHHH
Q 028016 33 TPPYVDSPMAIGYNATISAPHMH---ATCLQLLEEN----------------------LKPGMHALDIGSGTGYLTACFA 87 (215)
Q Consensus 33 ~~~y~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~----------------------~~~~~~vLdiG~G~G~~~~~l~ 87 (215)
...|....+.++.+..++.|+.. ..+++.+... ..++.+|||+|||+|.++..++
T Consensus 78 ~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 78 VKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred cCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 55666677788888888888722 2223322100 1134689999999999999998
Q ss_pred HHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC------------
Q 028016 88 LMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE------------ 155 (215)
Q Consensus 88 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~------------ 155 (215)
+.. +..+++++|+|+.+++.|++++..++.. +++.++.+|+...... ++||+|+++++.-.
T Consensus 158 ~~~-p~~~v~avDis~~al~~A~~N~~~~~l~-----~~v~~~~~D~~~~~~~-~~fDlIvsNPPYi~~~~~~~l~~~v~ 230 (506)
T PRK01544 158 CEL-PNANVIATDISLDAIEVAKSNAIKYEVT-----DRIQIIHSNWFENIEK-QKFDFIVSNPPYISHSEKSEMAIETI 230 (506)
T ss_pred HHC-CCCeEEEEECCHHHHHHHHHHHHHcCCc-----cceeeeecchhhhCcC-CCccEEEECCCCCCchhhhhcCchhh
Confidence 875 5579999999999999999998876543 5788999997654433 68999999875310
Q ss_pred --------------------chHHHHHhcCCCcEEEEEeCC
Q 028016 156 --------------------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 156 --------------------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+++.+.++|+|||.+++.++.
T Consensus 231 ~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~ 271 (506)
T PRK01544 231 NYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF 271 (506)
T ss_pred ccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence 123456799999999997754
No 71
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.53 E-value=2.4e-13 Score=111.52 Aligned_cols=116 Identities=23% Similarity=0.250 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028016 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
.|.+...++.... .+++.+|||+|||+|.++..++.. + .+++|+|+++.++..+++++...+. .++++.
T Consensus 167 ~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~-~--~~v~g~Di~~~~~~~a~~nl~~~g~------~~i~~~ 235 (329)
T TIGR01177 167 DPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLM-G--AKVIGCDIDWKMVAGARINLEHYGI------EDFFVK 235 (329)
T ss_pred CHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHh-C--CeEEEEcCCHHHHHHHHHHHHHhCC------CCCeEE
Confidence 4445555555544 778899999999999998887665 3 7899999999999999999988765 347889
Q ss_pred eCCCCCCCCCCCCccEEEEccCC---------------CCchHHHHHhcCCCcEEEEEeCCC
Q 028016 131 VGDGRKGWPEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 131 ~~d~~~~~~~~~~~D~V~~~~~~---------------~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.+|+.......+.||+|++++++ ..+++.+.+.|+|||++++.+++.
T Consensus 236 ~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 236 RGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred ecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 99988754444789999998764 123456789999999999988764
No 72
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=2.4e-13 Score=115.43 Aligned_cols=106 Identities=25% Similarity=0.324 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~ 141 (215)
..++.+|||+|||+|..+..+++.+++.++++++|+++.+++.+++++...+. .++.++.+|..... ...
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhccccccccc
Confidence 67789999999999999999999876668999999999999999999988765 47899999987643 223
Q ss_pred CCccEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028016 142 APYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 142 ~~~D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
++||.|+++.++. .+++.+.++|||||.|+++++..
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 6899999887541 23456789999999999887664
No 73
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.51 E-value=2.7e-13 Score=109.19 Aligned_cols=95 Identities=22% Similarity=0.213 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++.+|||+|||+|..+..+++. + .+|+++|.|+.+++.+++++...+. ++.+...|...... .++||+|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g--~~V~avD~s~~ai~~~~~~~~~~~l-------~v~~~~~D~~~~~~-~~~fD~I 188 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-G--FDVTAVDINQQSLENLQEIAEKENL-------NIRTGLYDINSASI-QEEYDFI 188 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEechhcccc-cCCccEE
Confidence 3459999999999999999986 3 7899999999999999988876442 57777777765433 3789999
Q ss_pred EEccCCCC--------chHHHHHhcCCCcEEEEE
Q 028016 148 HVGAAAPE--------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 148 ~~~~~~~~--------~~~~~~~~Lk~gG~lv~~ 173 (215)
++...+++ +++++.++|+|||++++.
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99877643 346788999999997664
No 74
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.51 E-value=3.8e-13 Score=112.15 Aligned_cols=103 Identities=26% Similarity=0.270 Sum_probs=81.7
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028016 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+++.+. +.++.+|||+|||+|.++..+++..+ .+|+++|+|+.+++.++++... ..+++...|...
T Consensus 158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~ 224 (383)
T PRK11705 158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRD 224 (383)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhh
Confidence 3444444 67889999999999999999998753 6899999999999999988742 247777787654
Q ss_pred CCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEeC
Q 028016 137 GWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~ 175 (215)
. .++||.|++...++++ ++.+.++|||||.+++...
T Consensus 225 l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 225 L---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred c---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 3 2689999988766543 4678899999999999654
No 75
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.51 E-value=3.3e-13 Score=110.09 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.++.+|||+|||+|..+..++.. ++ ..|+|+|+|+.++..++......+. ..++.+..+++..... .+.||+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~-----~~~i~~~~~d~e~lp~-~~~FD~ 192 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGN-----DQRAHLLPLGIEQLPA-LKAFDT 192 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCC-----CCCeEEEeCCHHHCCC-cCCcCE
Confidence 45789999999999999999987 45 4699999999988654332221111 1478999998876554 478999
Q ss_pred EEEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028016 147 IHVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 147 V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
|++...++| +++++.+.|+|||.+++.+
T Consensus 193 V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 193 VFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred EEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 999887765 3467899999999999863
No 76
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.51 E-value=3.4e-13 Score=105.50 Aligned_cols=112 Identities=27% Similarity=0.318 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028016 54 MHATCLQLLEENL-KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 54 ~~~~~l~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
....+++.+.... .++.+|||+|||+|..+..+++.+ +..+++++|+++.+++.+++++. +++.++.+
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~ 87 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----------ENVQFICG 87 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----------CCCeEEec
Confidence 3445555554221 345789999999999999999884 66789999999999998887543 36788888
Q ss_pred CCCCCCCCCCCccEEEEccCCCC------chHHHHHhcCCCcEEEEEeCC
Q 028016 133 DGRKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 133 d~~~~~~~~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|........++||+|++...+++ +++.+.++|+|||.+++..+.
T Consensus 88 d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 88 DAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred chhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 88776544478999999887654 446789999999999997654
No 77
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.51 E-value=4.2e-14 Score=108.80 Aligned_cols=101 Identities=23% Similarity=0.313 Sum_probs=75.7
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCc-ccCCCeEEEeCCCCCCCCCCCCccEE
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL-LKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
|++|||+|||+|.++..+++.. .+|+|+|.++.+++.|++.......... +. -++++...++.... +.||.|
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~-y~l~~~~~~~E~~~---~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIA-YRLEYEDTDVEGLT---GKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccc-eeeehhhcchhhcc---ccccee
Confidence 4889999999999999999984 8999999999999999887433221100 00 12445555554432 569999
Q ss_pred EEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028016 148 HVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 148 ~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|...++|+ .+.+.++|||||.|++++-+
T Consensus 163 vcsevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 163 VCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 999988876 35678999999999998644
No 78
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.51 E-value=2.5e-14 Score=97.41 Aligned_cols=90 Identities=24% Similarity=0.409 Sum_probs=68.9
Q ss_pred EEEEcCCccHHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEE
Q 028016 72 ALDIGSGTGYLTACFALMV--GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 149 (215)
Q Consensus 72 vLdiG~G~G~~~~~l~~~~--~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~ 149 (215)
|||+|||+|..+..+++.+ ++..+++++|+|+.+++.++++....+ .++++.++|+.+.....++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-------~~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-------PKVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-------TTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-------CceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999999886 344799999999999999999887633 3789999999875444479999999
Q ss_pred ccC-CCCc--------hHHHHHhcCCCc
Q 028016 150 GAA-APEI--------PQALIDQLKPGG 168 (215)
Q Consensus 150 ~~~-~~~~--------~~~~~~~Lk~gG 168 (215)
... ++++ ++++.++|+|||
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 544 5543 356889999998
No 79
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.50 E-value=4.7e-13 Score=108.33 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=75.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..++.. ++ ..|+|+|+|+.++..++..-..... ..++.+...++.+.... ..||
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~~~~~~~~~-----~~~v~~~~~~ie~lp~~-~~FD 190 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFEAVRKLLDN-----DKRAILEPLGIEQLHEL-YAFD 190 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHHhcc-----CCCeEEEECCHHHCCCC-CCcC
Confidence 456789999999999999888876 44 5799999999998764322111111 14677777777654433 5899
Q ss_pred EEEEccCCCCc------hHHHHHhcCCCcEEEEEe
Q 028016 146 AIHVGAAAPEI------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~ 174 (215)
+|++...+.+. ++++.+.|+|||.|++.+
T Consensus 191 ~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999987653 467899999999999864
No 80
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.50 E-value=2.9e-13 Score=101.57 Aligned_cols=106 Identities=22% Similarity=0.159 Sum_probs=79.3
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. .-+..++||+|||.|..+..+++++ -.|+++|.|+.+++.+.+.....++ .++....|..
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~l-------~i~~~~~Dl~ 87 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEGL-------DIRTRVADLN 87 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGC
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcCc-------eeEEEEecch
Confidence 44555554 4456799999999999999999984 7899999999999999887766553 5888899987
Q ss_pred CCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEEe
Q 028016 136 KGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~ 174 (215)
....+ +.||+|++...+.. +++.+...++|||++++.+
T Consensus 88 ~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 88 DFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp CBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 65554 78999998755533 3456788899999988843
No 81
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.50 E-value=2.8e-13 Score=105.30 Aligned_cols=99 Identities=21% Similarity=0.206 Sum_probs=81.2
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEE
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 149 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~ 149 (215)
.+|||+|||+|..+..+++.+ +..+++++|+|+.+++.+++++...+.. .++.+...|....... ++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~-----~~i~~~~~d~~~~~~~-~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQ-----GRIRIFYRDSAKDPFP-DTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCC-----cceEEEecccccCCCC-CCCCEeeh
Confidence 379999999999999999885 4478999999999999999998776554 5789999988654333 68999998
Q ss_pred ccCCCC------chHHHHHhcCCCcEEEEEeC
Q 028016 150 GAAAPE------IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 150 ~~~~~~------~~~~~~~~Lk~gG~lv~~~~ 175 (215)
...+++ +++++.++|+|||.+++...
T Consensus 74 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 74 FEVIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 776654 44688999999999998653
No 82
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.49 E-value=6.6e-13 Score=113.10 Aligned_cols=106 Identities=24% Similarity=0.253 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~ 144 (215)
..++.+|||+|||+|..+..+++.+++.++++++|+++.+++.+++++...+. .+++++.+|+..... -.+.|
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCcccccchhcccC
Confidence 67788999999999999999999875668999999999999999999988665 468999999876432 11689
Q ss_pred cEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028016 145 DAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+|++++++. .+++.+.++|||||.|+++++..
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 9999987642 13456788999999999877653
No 83
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.49 E-value=9.6e-13 Score=103.85 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=91.3
Q ss_pred CCCCcCCCccccCCcccchhH---HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHH
Q 028016 33 TPPYVDSPMAIGYNATISAPH---MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSS 109 (215)
Q Consensus 33 ~~~y~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a 109 (215)
...|....+..+.+..+..+. +...++..+. ...+..+|||+|||+|.++..+++.. +..+++++|+|+.+++.+
T Consensus 49 ~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~-~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A 126 (251)
T TIGR03704 49 WAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALAR-PRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCA 126 (251)
T ss_pred cCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhc-ccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 344444455555555543332 2333333222 11224589999999999999999875 446899999999999999
Q ss_pred HHHHHhhcccCcccCCCeEEEeCCCCCCCCC--CCCccEEEEccCCC--------------------------------C
Q 028016 110 IQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAP--------------------------------E 155 (215)
Q Consensus 110 ~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~V~~~~~~~--------------------------------~ 155 (215)
++++..+ ++++..+|+.+.... .+.||+|++++++. .
T Consensus 127 ~~N~~~~---------~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~ 197 (251)
T TIGR03704 127 RRNLADA---------GGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRR 197 (251)
T ss_pred HHHHHHc---------CCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHH
Confidence 9998763 246788887654321 25799999998652 1
Q ss_pred chHHHHHhcCCCcEEEEEeCCC
Q 028016 156 IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 156 ~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+.+.+.++|+|||++++.+...
T Consensus 198 i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 198 VAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred HHHHHHHhcCCCCEEEEEECcc
Confidence 2234568999999999987653
No 84
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.49 E-value=1.3e-12 Score=102.17 Aligned_cols=113 Identities=25% Similarity=0.416 Sum_probs=87.7
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+. ..++.+|||+|||+|..+..+++.++...+++++|+++.+++.+++++...+.. .++.+..+|.
T Consensus 40 ~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-----~~~~~~~~d~ 112 (239)
T PRK00216 40 RRKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS-----GNVEFVQGDA 112 (239)
T ss_pred HHHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc-----cCeEEEeccc
Confidence 344555554 456789999999999999999988643589999999999999999987653322 5788999988
Q ss_pred CCCCCCCCCccEEEEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028016 135 RKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
.......+.||+|++...+++ +++.+.+.|+|||.+++..
T Consensus 113 ~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 113 EALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 765544478999998776543 4467889999999998753
No 85
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.49 E-value=5.2e-13 Score=101.96 Aligned_cols=112 Identities=22% Similarity=0.371 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GD 133 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d 133 (215)
...++..+. ...+..+|||+|++.|+.++.++..+..+++++++|.++++.+.|++++...++. +++.++. +|
T Consensus 47 ~g~~L~~L~-~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-----~~i~~~~~gd 120 (219)
T COG4122 47 TGALLRLLA-RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-----DRIELLLGGD 120 (219)
T ss_pred HHHHHHHHH-HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-----ceEEEEecCc
Confidence 455555554 2567789999999999999999999865789999999999999999999998876 5688888 47
Q ss_pred CCCCCCC--CCCccEEEEccCCCC---chHHHHHhcCCCcEEEE
Q 028016 134 GRKGWPE--FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 134 ~~~~~~~--~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~ 172 (215)
..+.... .++||+||.+..-.. +++.+.++|+|||.+++
T Consensus 121 al~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 121 ALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred HHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEE
Confidence 7654432 489999999987654 55678899999999998
No 86
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.49 E-value=8.5e-13 Score=105.66 Aligned_cols=131 Identities=22% Similarity=0.336 Sum_probs=92.9
Q ss_pred CcCCCccccCCcccchhH---HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 028016 36 YVDSPMAIGYNATISAPH---MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 36 y~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
|.+..+..+.+..++.|. +...++..+. ..++.+|||+|||+|..+..++... +..+++++|+++.+++.++++
T Consensus 75 f~~~~~~~~~~~lipr~~te~l~~~~~~~~~--~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 75 FWGLDFKVSPGVLIPRPETEELVEWALEALL--LKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRN 151 (275)
T ss_pred EcCcEEEECCCceeCCCCcHHHHHHHHHhcc--ccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 444445555555544443 2333332222 4567899999999999999999885 558999999999999999998
Q ss_pred HHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC--------------------------------chHHH
Q 028016 113 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE--------------------------------IPQAL 160 (215)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~--------------------------------~~~~~ 160 (215)
+. ... ..++.++.+|+..... .++||+|+++++... +.+.+
T Consensus 152 ~~-~~~-----~~~i~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~ 224 (275)
T PRK09328 152 AK-HGL-----GARVEFLQGDWFEPLP-GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQA 224 (275)
T ss_pred HH-hCC-----CCcEEEEEccccCcCC-CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHH
Confidence 87 221 1578999999866544 368999999875421 12345
Q ss_pred HHhcCCCcEEEEEeCC
Q 028016 161 IDQLKPGGRMVIPVGN 176 (215)
Q Consensus 161 ~~~Lk~gG~lv~~~~~ 176 (215)
.++|+|||++++.++.
T Consensus 225 ~~~Lk~gG~l~~e~g~ 240 (275)
T PRK09328 225 PRYLKPGGWLLLEIGY 240 (275)
T ss_pred HHhcccCCEEEEEECc
Confidence 5899999999998754
No 87
>PLN03075 nicotianamine synthase; Provisional
Probab=99.48 E-value=7.5e-13 Score=105.48 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=81.0
Q ss_pred CCCCEEEEEcCCccHH-HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh-hcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 67 KPGMHALDIGSGTGYL-TACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-SAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~-~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.+..+|+|+|||.|.+ ++.+++...++++++++|.++.+++.|++.+.. .++. ++++|..+|+.+.....+.|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-----~rV~F~~~Da~~~~~~l~~F 196 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS-----KRMFFHTADVMDVTESLKEY 196 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-----CCcEEEECchhhcccccCCc
Confidence 3668999999997754 444454445778999999999999999999854 4443 67999999998754444789
Q ss_pred cEEEEccCCCC--------chHHHHHhcCCCcEEEEEeCC
Q 028016 145 DAIHVGAAAPE--------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+|++. .+.. +++.+.+.|+|||.+++-...
T Consensus 197 DlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~ 235 (296)
T PLN03075 197 DVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAH 235 (296)
T ss_pred CEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEeccc
Confidence 999999 4432 446789999999999996543
No 88
>PRK14968 putative methyltransferase; Provisional
Probab=99.48 E-value=2e-12 Score=97.59 Aligned_cols=111 Identities=22% Similarity=0.273 Sum_probs=85.4
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028016 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+++.+. ..++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++...+.. ..++.+..+|..+
T Consensus 14 ~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~-~--~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~ 84 (188)
T PRK14968 14 LLAENAV--DKKGDRVLEVGTGSGIVAIVAAKN-G--KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLFE 84 (188)
T ss_pred HHHHhhh--ccCCCEEEEEccccCHHHHHHHhh-c--ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEeccccc
Confidence 3444444 466789999999999999999987 3 79999999999999999988765542 0127888888776
Q ss_pred CCCCCCCccEEEEccCCCC---------------------------chHHHHHhcCCCcEEEEEeCCC
Q 028016 137 GWPEFAPYDAIHVGAAAPE---------------------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~---------------------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.... ..||+|+++.++.. +++++.++|+|||.+++..+..
T Consensus 85 ~~~~-~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 85 PFRG-DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred cccc-cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 5544 48999998865422 3567889999999998876653
No 89
>PLN02476 O-methyltransferase
Probab=99.48 E-value=3.9e-13 Score=106.50 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=91.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+. ...+..+|||+||++|+.++.++..++++++++++|.++...+.|+++++..+.. ++++++.+|+
T Consensus 106 ~g~lL~~L~-~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-----~~I~li~GdA 179 (278)
T PLN02476 106 QAQLLAMLV-QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-----HKVNVKHGLA 179 (278)
T ss_pred HHHHHHHHH-HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCH
Confidence 445555554 2455789999999999999999998776789999999999999999999998765 6899999998
Q ss_pred CCCCCC------CCCccEEEEccCCCC---chHHHHHhcCCCcEEEE
Q 028016 135 RKGWPE------FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 135 ~~~~~~------~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~ 172 (215)
.+.++. .++||+||.+..-.. +.+.+.++|+|||.+++
T Consensus 180 ~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 180 AESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred HHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 764321 258999999987644 44678899999999987
No 90
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=7.7e-13 Score=105.77 Aligned_cols=133 Identities=20% Similarity=0.258 Sum_probs=95.6
Q ss_pred CCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCC-EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 028016 34 PPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 34 ~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
..|....+....+..++.|... .+++.+........ +|||+|||||.+++.+++.. +..+|+++|+|+.+++.|++|
T Consensus 76 ~~f~gl~~~v~~~vliPr~dTe-~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 76 AEFGGLRFKVDEGVLIPRPDTE-LLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALAREN 153 (280)
T ss_pred CeecceeeeeCCCceecCCchH-HHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHH
Confidence 3444555556667777777733 33333111122223 79999999999999999985 657999999999999999999
Q ss_pred HHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC-------------------------------CchHHHH
Q 028016 113 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-------------------------------EIPQALI 161 (215)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~-------------------------------~~~~~~~ 161 (215)
+..+++ .++.++.+|+..... ++||+|+++++.- .+...+.
T Consensus 154 a~~~~l------~~~~~~~~dlf~~~~--~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~ 225 (280)
T COG2890 154 AERNGL------VRVLVVQSDLFEPLR--GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAP 225 (280)
T ss_pred HHHcCC------ccEEEEeeecccccC--CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhH
Confidence 988764 356666667666544 4899999998751 1113467
Q ss_pred HhcCCCcEEEEEeCC
Q 028016 162 DQLKPGGRMVIPVGN 176 (215)
Q Consensus 162 ~~Lk~gG~lv~~~~~ 176 (215)
+.|+|||.+++.++.
T Consensus 226 ~~l~~~g~l~le~g~ 240 (280)
T COG2890 226 DILKPGGVLILEIGL 240 (280)
T ss_pred HHcCCCcEEEEEECC
Confidence 899999999998874
No 91
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.48 E-value=6.1e-13 Score=108.53 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.++.+|||+|||+|..+..+++..+ ..+++++|.++.+++.++++... .++.++.+|..+.....++||+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e~lp~~~~sFDv 181 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAEDLPFPTDYADR 181 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHHhCCCCCCceeE
Confidence 4678999999999999999988763 37899999999999999886532 4678899998765444478999
Q ss_pred EEEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028016 147 IHVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 147 V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
|++...+++ .++++.++|+|||.+++..
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 999887654 4468899999999998753
No 92
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.48 E-value=1e-12 Score=111.35 Aligned_cols=114 Identities=21% Similarity=0.227 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+...+. ..++.+|||+|||+|..+..+++.++ .++++++|+++.+++.+++++...+.. ..+.+..+|..
T Consensus 228 ~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~-----~~v~~~~~d~~ 299 (426)
T TIGR00563 228 QWVATWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT-----IKAETKDGDGR 299 (426)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeccccc
Confidence 34444554 67889999999999999999999875 589999999999999999999876542 23344556654
Q ss_pred CCCC--CCCCccEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028016 136 KGWP--EFAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 136 ~~~~--~~~~~D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.... ..++||.|+++.++. .+++.+.++|||||.|++++++.
T Consensus 300 ~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 300 GPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 3222 336899999876432 13356788999999999988764
No 93
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.48 E-value=6.3e-13 Score=102.28 Aligned_cols=104 Identities=23% Similarity=0.252 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc------CcccCCCeEEEeCCCCCCCCC
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA------PLLKEGSLSVHVGDGRKGWPE 140 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------~~~~~~~v~~~~~d~~~~~~~ 140 (215)
.++.+|||+|||.|..+..++++ | .+|+|+|+|+.+++.+.+........ ......++++.++|+.+....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-G--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-C--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 56789999999999999999988 4 78999999999999764321110000 001125789999999775432
Q ss_pred -CCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEE
Q 028016 141 -FAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 -~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~ 173 (215)
.+.||.|+....+.+++ +.+.++|||||.+++.
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 35799999887765554 5688999999975553
No 94
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.48 E-value=1.1e-13 Score=105.56 Aligned_cols=113 Identities=24% Similarity=0.357 Sum_probs=90.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+.. ..+..+||||||++|+.++.+++.++++++++++|.++...+.|++++...+.. ++++++.+|+
T Consensus 33 ~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-----~~I~~~~gda 106 (205)
T PF01596_consen 33 TGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-----DRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-----GGEEEEES-H
T ss_pred HHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-----CcEEEEEecc
Confidence 4556666653 344579999999999999999998877799999999999999999999987765 6899999998
Q ss_pred CCCCC----C--CCCccEEEEccCCCCch---HHHHHhcCCCcEEEEE
Q 028016 135 RKGWP----E--FAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVIP 173 (215)
Q Consensus 135 ~~~~~----~--~~~~D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~ 173 (215)
.+..+ . .++||+||.+..-.... +.+.++|++||.+++.
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence 75322 1 25899999999876544 5678999999999983
No 95
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.47 E-value=2.1e-13 Score=101.48 Aligned_cols=94 Identities=23% Similarity=0.350 Sum_probs=73.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
-.++||+|||.|.++..|+.+. .+++++|+++.+++.|++++... .++++.++++...++. +.||+|+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~--------~~V~~~~~dvp~~~P~-~~FDLIV 111 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL--------PHVEWIQADVPEFWPE-GRFDLIV 111 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---S-S-EEEEE
T ss_pred cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC--------CCeEEEECcCCCCCCC-CCeeEEE
Confidence 3689999999999999999997 79999999999999999998653 5899999999888776 8999999
Q ss_pred EccCCCCc---------hHHHHHhcCCCcEEEEEe
Q 028016 149 VGAAAPEI---------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 149 ~~~~~~~~---------~~~~~~~Lk~gG~lv~~~ 174 (215)
+...+..+ .+.+...|+|||.|++-+
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 98876433 345678899999999954
No 96
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.47 E-value=1.3e-12 Score=100.23 Aligned_cols=108 Identities=20% Similarity=0.225 Sum_probs=88.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCC-----CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQ-----GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~-----~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 140 (215)
..+++++||++||||.++..+.+..+.. ++|+.+|+++.|+..++++....+.. ....+.++.+|+.+.+.+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---ASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---cCCceEEEeCCcccCCCC
Confidence 5667999999999999999999887442 79999999999999999988664432 223589999999988887
Q ss_pred CCCccEEEEccCCCC------chHHHHHhcCCCcEEEEEeCC
Q 028016 141 FAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
++.||.......+.. .++++.++|||||++.+-..+
T Consensus 175 d~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred CCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 789999988776643 446889999999999875443
No 97
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.47 E-value=9.5e-13 Score=96.01 Aligned_cols=103 Identities=21% Similarity=0.193 Sum_probs=81.3
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEE
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 149 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~ 149 (215)
.+|||+|||+|.+...+++. +..++++|+|.|+.+++.|+...+..+.. +.++|.+.|+.+.-...+.||+|+.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~-----n~I~f~q~DI~~~~~~~~qfdlvlD 142 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFS-----NEIRFQQLDITDPDFLSGQFDLVLD 142 (227)
T ss_pred cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCC-----cceeEEEeeccCCcccccceeEEee
Confidence 39999999999999999988 55578999999999999998777766654 4599999998874333377888854
Q ss_pred ccCCC--------------CchHHHHHhcCCCcEEEEEeCCCc
Q 028016 150 GAAAP--------------EIPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 150 ~~~~~--------------~~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
-+.+. -+...+.++|+|||+++++.+|..
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 44331 234678899999999999988854
No 98
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=1.6e-12 Score=110.10 Aligned_cols=110 Identities=27% Similarity=0.350 Sum_probs=86.2
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028016 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+...+. ..++.+|||+|||+|..+..+++.. +.++++++|.++.+++.+++++...+. ++.++.+|+..
T Consensus 235 ~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~ 304 (427)
T PRK10901 235 LAATLLA--PQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARD 304 (427)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCccc
Confidence 3344444 6788999999999999999999985 337999999999999999999987653 36788888875
Q ss_pred CC--CCCCCccEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCC
Q 028016 137 GW--PEFAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 137 ~~--~~~~~~D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.. ...++||.|++++++. .+++.+.++|||||.++++++.
T Consensus 305 ~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 305 PAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred chhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 32 2236799999887642 1345677899999999998864
No 99
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.46 E-value=1.2e-12 Score=108.03 Aligned_cols=111 Identities=20% Similarity=0.231 Sum_probs=90.3
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028016 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+++.+. ...+..+||||||+|..+..+|+.. |+..++|+|+++.+++.+.+++...+. .++.++.+|+..
T Consensus 113 ~~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~~ 183 (390)
T PRK14121 113 NFLDFIS--KNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDARL 183 (390)
T ss_pred HHHHHhc--CCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHH
Confidence 4455554 4456799999999999999999985 778999999999999999999887654 589999999854
Q ss_pred C--CCCCCCccEEEEccCCC------------CchHHHHHhcCCCcEEEEEeCC
Q 028016 137 G--WPEFAPYDAIHVGAAAP------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 137 ~--~~~~~~~D~V~~~~~~~------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
. ....+++|.|++..+.+ .+++.+.++|+|||.+.+.+..
T Consensus 184 ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 184 LLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred hhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 2 22347899999887764 3567889999999999997755
No 100
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.46 E-value=2.4e-13 Score=113.23 Aligned_cols=150 Identities=17% Similarity=0.107 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHHHhc--CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE
Q 028016 51 APHMHATCLQLLEEN--LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
.+.....+.+.+... ..++.+|||+|||+|.+++.++... .+++++|+++.+++.|++++..++. .+++
T Consensus 214 n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~------~~~~ 284 (374)
T TIGR02085 214 NPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGL------DNLS 284 (374)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCC------CcEE
Confidence 333444444433221 2356799999999999999999763 6899999999999999999987654 4899
Q ss_pred EEeCCCCCCCCC-CCCccEEEEccCCCCchHHH---HHhcCCCcEEEEEeCCCc--eeEEEEEEcCCCceEEEeeceEEE
Q 028016 129 VHVGDGRKGWPE-FAPYDAIHVGAAAPEIPQAL---IDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRY 202 (215)
Q Consensus 129 ~~~~d~~~~~~~-~~~~D~V~~~~~~~~~~~~~---~~~Lk~gG~lv~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 202 (215)
+..+|+.+.... ...||+|+++++...+.+.+ ...++|++.++++++... ..+..+ +.|.......+.+
T Consensus 285 ~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L-----~gy~l~~~~~~Dm 359 (374)
T TIGR02085 285 FAALDSAKFATAQMSAPELVLVNPPRRGIGKELCDYLSQMAPKFILYSSCNAQTMAKDIAEL-----SGYQIERVQLFDM 359 (374)
T ss_pred EEECCHHHHHHhcCCCCCEEEECCCCCCCcHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh-----cCceEEEEEEecc
Confidence 999998654321 24699999999876554433 334789999999886542 122222 4699999999999
Q ss_pred eecccCccccCC
Q 028016 203 VPLTSRDAQLRG 214 (215)
Q Consensus 203 ~p~~~~~~~~~~ 214 (215)
.|.|++.|.|..
T Consensus 360 FPqT~HvE~v~l 371 (374)
T TIGR02085 360 FPHTSHYEVLTL 371 (374)
T ss_pred CCCCCcEEEEEE
Confidence 999999987753
No 101
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.45 E-value=2.1e-14 Score=97.37 Aligned_cols=91 Identities=22% Similarity=0.344 Sum_probs=58.4
Q ss_pred EEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCCCccEEEEc
Q 028016 73 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPYDAIHVG 150 (215)
Q Consensus 73 LdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~D~V~~~ 150 (215)
||+|||+|.++..++... +..+++++|+|+.+++.+++++..... .+......+..+... ..++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGN------DNFERLRFDVLDLFDYDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS---CCC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC------cceeEEEeecCChhhcccccccceehhh
Confidence 799999999999999985 558999999999999999888877543 233344433333221 11589999999
Q ss_pred cCCCCch------HHHHHhcCCCcEE
Q 028016 151 AAAPEIP------QALIDQLKPGGRM 170 (215)
Q Consensus 151 ~~~~~~~------~~~~~~Lk~gG~l 170 (215)
..++++. +.+.++|+|||+|
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 9998763 5678999999986
No 102
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.44 E-value=3.4e-13 Score=114.53 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=101.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----CC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~ 141 (215)
..++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++..++. .+++++.+|+.+..+ ..
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCHHHHHHHHHhcC
Confidence 4567899999999999999999874 6899999999999999999987664 589999999865322 12
Q ss_pred CCccEEEEccCCCCchHHH---HHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccCcc
Q 028016 142 APYDAIHVGAAAPEIPQAL---IDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 210 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~---~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 210 (215)
+.||+|+++++-..+...+ ...++|++.++++++... ....+....+..|.......+.+.|.|++.|
T Consensus 361 ~~~D~vi~dPPr~G~~~~~l~~l~~l~~~~ivyvsc~p~t-lard~~~l~~~gy~~~~~~~~DmFP~T~HvE 431 (431)
T TIGR00479 361 QIPDVLLLDPPRKGCAAEVLRTIIELKPERIVYVSCNPAT-LARDLEFLCKEGYGITWVQPVDMFPHTAHVE 431 (431)
T ss_pred CCCCEEEECcCCCCCCHHHHHHHHhcCCCEEEEEcCCHHH-HHHHHHHHHHCCeeEEEEEEeccCCCCCCCC
Confidence 5799999998764433222 234789998888765322 2222223335568888999999999998764
No 103
>PTZ00146 fibrillarin; Provisional
Probab=99.44 E-value=2e-12 Score=102.72 Aligned_cols=101 Identities=24% Similarity=0.325 Sum_probs=77.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCCC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~ 142 (215)
+.++++|||+|||+|..+..+++.+++.++|+++|+++.+.+...+..... .++.++.+|+.... ...+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--------~NI~~I~~Da~~p~~y~~~~~ 201 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--------PNIVPIIEDARYPQKYRMLVP 201 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------CCCEEEECCccChhhhhcccC
Confidence 688999999999999999999999887789999999987665444433221 47888899876421 1225
Q ss_pred CccEEEEccCCCC----chHHHHHhcCCCcEEEEEe
Q 028016 143 PYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 143 ~~D~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~ 174 (215)
.+|+|+++...++ +..++.++|||||.|++.+
T Consensus 202 ~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 202 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEE
Confidence 7999999886544 2346788999999999954
No 104
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.44 E-value=7e-13 Score=98.46 Aligned_cols=97 Identities=27% Similarity=0.395 Sum_probs=80.8
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCC
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFA 142 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~ 142 (215)
.++++.+|||+|||.|.+...+.+.- +.+.+|+|++++.+..|.+ ..+.++++|+...+. +++
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~-------------rGv~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVA-------------RGVSVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHH-------------cCCCEEECCHHHhHhhCCCC
Confidence 37789999999999999999988753 3789999999999888765 367899999886542 458
Q ss_pred CccEEEEccCCCCch---HHHHHhcCCCcEEEEEeCC
Q 028016 143 PYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~~~~ 176 (215)
+||.|+.+..++++. .-+.++|+-|...++++||
T Consensus 75 sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPN 111 (193)
T PF07021_consen 75 SFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPN 111 (193)
T ss_pred CccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecC
Confidence 999999999987765 3467788999999999998
No 105
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.43 E-value=5e-13 Score=98.22 Aligned_cols=103 Identities=31% Similarity=0.421 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
...+..+.....++.+|||+|||+|.++..+++. + .+++++|+++.+++. . +......+..
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~~~g~D~~~~~~~~------~----------~~~~~~~~~~ 70 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-G--FEVTGVDISPQMIEK------R----------NVVFDNFDAQ 70 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-T--SEEEEEESSHHHHHH------T----------TSEEEEEECH
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-C--CEEEEEECCHHHHhh------h----------hhhhhhhhhh
Confidence 4445555433577899999999999999999776 3 599999999999887 1 1222222222
Q ss_pred CCCCCCCCccEEEEccCCCCch------HHHHHhcCCCcEEEEEeCCC
Q 028016 136 KGWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~~------~~~~~~Lk~gG~lv~~~~~~ 177 (215)
......++||+|++...++++. +.+.++|||||++++..++.
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 2222337999999999998765 57889999999999988764
No 106
>PRK06922 hypothetical protein; Provisional
Probab=99.43 E-value=2.2e-12 Score=111.87 Aligned_cols=101 Identities=23% Similarity=0.267 Sum_probs=80.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 143 (215)
..++.+|||+|||+|..+..+++.. +..+++|+|+|+.+++.|+++....+ .++.++++|..+.. ...++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g-------~~ie~I~gDa~dLp~~fedeS 487 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG-------RSWNVIKGDAINLSSSFEKES 487 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC-------CCeEEEEcchHhCccccCCCC
Confidence 3467899999999999999998875 56899999999999999988765432 36788888876532 33478
Q ss_pred ccEEEEccCCCC-------------------chHHHHHhcCCCcEEEEEe
Q 028016 144 YDAIHVGAAAPE-------------------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 144 ~D~V~~~~~~~~-------------------~~~~~~~~Lk~gG~lv~~~ 174 (215)
||+|+++..+++ +++++.++|||||.+++.-
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 999998866543 2356789999999999964
No 107
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.43 E-value=5.5e-12 Score=95.87 Aligned_cols=121 Identities=15% Similarity=0.069 Sum_probs=87.8
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028016 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
..+...+...++..+. ...++.+|||+|||+|.+++.++.. +. .+|+++|.++.+++.++++++.++. .++
T Consensus 34 Rp~~d~v~e~l~~~l~-~~~~~~~vLDl~~GsG~l~l~~lsr-~a-~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v 104 (199)
T PRK10909 34 RPTTDRVRETLFNWLA-PVIVDARCLDCFAGSGALGLEALSR-YA-AGATLLEMDRAVAQQLIKNLATLKA------GNA 104 (199)
T ss_pred CcCCHHHHHHHHHHHh-hhcCCCEEEEcCCCccHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHHHHHhCC------CcE
Confidence 3344444455666664 2345689999999999999876555 33 6999999999999999999988664 478
Q ss_pred EEEeCCCCCCCC-CCCCccEEEEccCCC-CchHHHHH------hcCCCcEEEEEeCCC
Q 028016 128 SVHVGDGRKGWP-EFAPYDAIHVGAAAP-EIPQALID------QLKPGGRMVIPVGNI 177 (215)
Q Consensus 128 ~~~~~d~~~~~~-~~~~~D~V~~~~~~~-~~~~~~~~------~Lk~gG~lv~~~~~~ 177 (215)
.++.+|+..... ..++||+|++++++. .+.+.+.+ +|+|+|.+++.+...
T Consensus 105 ~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 105 RVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred EEEEchHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 999999865442 224799999999953 33433322 268899999987653
No 108
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.41 E-value=4.2e-12 Score=100.97 Aligned_cols=111 Identities=13% Similarity=0.122 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCCccH----HHHHHHHHhCC----CCeEEEEecChHHHHHHHHHHHhh----cccC---------c----
Q 028016 67 KPGMHALDIGSGTGY----LTACFALMVGP----QGRAVGVEHIPELVVSSIQNIEKS----AAAP---------L---- 121 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~----~~~~l~~~~~~----~~~v~~~D~s~~~~~~a~~~~~~~----~~~~---------~---- 121 (215)
.++.+|||+|||||. +++.+++.++. +.+|+|+|+|+.+++.|++.+... +... .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 45555655421 368999999999999998754210 0000 0
Q ss_pred ----ccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEEeCCC
Q 028016 122 ----LKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 122 ----~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
--..++.+.+.|..+..+..++||+|+|...+.+ +++++.+.|+|||+|++-....
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 0013688999999876654589999999887654 3457889999999999965443
No 109
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.40 E-value=7.8e-12 Score=96.80 Aligned_cols=110 Identities=24% Similarity=0.328 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+. ..++.+|||+|||+|..+..+++..+...+++++|+++.+++.+++++. . . .++.+..+|.
T Consensus 28 ~~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~--~-----~~i~~~~~d~ 97 (223)
T TIGR01934 28 RRRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L--P-----LNIEFIQADA 97 (223)
T ss_pred HHHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c--C-----CCceEEecch
Confidence 344455554 4578899999999999999999886322689999999999999988764 1 1 4788888888
Q ss_pred CCCCCCCCCccEEEEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028016 135 RKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
.+.....++||+|++...+++ +++.+.+.|+|||++++..
T Consensus 98 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 98 EALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred hcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 765444468999988766543 4467889999999999754
No 110
>PRK04457 spermidine synthase; Provisional
Probab=99.40 E-value=4.7e-12 Score=100.52 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=81.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~ 144 (215)
..+..+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++..... .++++++.+|+.+.... .++|
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~~l~~~~~~y 137 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAEYIAVHRHST 137 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHHHHHhCCCCC
Confidence 3445789999999999999999885 668999999999999999998754322 26899999998654322 2589
Q ss_pred cEEEEccCC----------CCchHHHHHhcCCCcEEEEEeC
Q 028016 145 DAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 145 D~V~~~~~~----------~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
|+|+++..- ..+.+.+.+.|+|||++++...
T Consensus 138 D~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 138 DVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 999987421 2355788899999999999653
No 111
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.40 E-value=2.7e-12 Score=100.47 Aligned_cols=112 Identities=23% Similarity=0.295 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+.. ..+..+|||+|+++|+.++.++..++++++++++|.++...+.|++++...+.. ++++++.+++
T Consensus 67 ~g~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-----~~I~~~~G~a 140 (247)
T PLN02589 67 EGQFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-----HKIDFREGPA 140 (247)
T ss_pred HHHHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-----CceEEEeccH
Confidence 4555555542 444579999999999999999988777789999999999999999999988765 7999999998
Q ss_pred CCCCCC-------CCCccEEEEccCCCCch---HHHHHhcCCCcEEEE
Q 028016 135 RKGWPE-------FAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVI 172 (215)
Q Consensus 135 ~~~~~~-------~~~~D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~ 172 (215)
.+.++. .++||+||.+..-..++ +.+.++|++||.+++
T Consensus 141 ~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 141 LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 764331 26899999998765444 567899999999887
No 112
>PRK05785 hypothetical protein; Provisional
Probab=99.39 E-value=7.7e-12 Score=97.27 Aligned_cols=96 Identities=13% Similarity=0.064 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+.....++.+|||+|||||..+..+++.. ..+++|+|+|+.|++.|++. ..++++|+.
T Consensus 39 ~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~--------------~~~~~~d~~ 102 (226)
T PRK05785 39 AELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA--------------DDKVVGSFE 102 (226)
T ss_pred HHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc--------------cceEEechh
Confidence 34444443223457899999999999999998874 26999999999999998753 124567776
Q ss_pred CCCCCCCCccEEEEccCCCCc------hHHHHHhcCCC
Q 028016 136 KGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPG 167 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~g 167 (215)
.....+++||+|++...++++ ++++.++|||.
T Consensus 103 ~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 103 ALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 655555899999999888653 36789999995
No 113
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.39 E-value=4.4e-12 Score=97.46 Aligned_cols=103 Identities=22% Similarity=0.289 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
.++.+.+. .++++.+|||+|||+|..+..+++..++.++|+++|+++. .. ..++.++++|+.
T Consensus 40 ~~~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~------~~~v~~i~~D~~ 101 (209)
T PRK11188 40 DEIQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DP------IVGVDFLQGDFR 101 (209)
T ss_pred HHHHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cC------CCCcEEEecCCC
Confidence 34444443 2577889999999999999999998766679999999881 01 146889999987
Q ss_pred CCC--------CCCCCccEEEEccCCC-----------------CchHHHHHhcCCCcEEEEEeCC
Q 028016 136 KGW--------PEFAPYDAIHVGAAAP-----------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~--------~~~~~~D~V~~~~~~~-----------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
... ...++||+|+++.... .+++.+.++|+|||.+++.+..
T Consensus 102 ~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 102 DELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred ChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 742 2337899999876431 2346788999999999996543
No 114
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.39 E-value=1e-11 Score=96.12 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=101.8
Q ss_pred CCCCcCCCccccCCcccchhH---HHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHH
Q 028016 33 TPPYVDSPMAIGYNATISAPH---MHATCLQLLEEN-LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 108 (215)
Q Consensus 33 ~~~y~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~ 108 (215)
+..|.+-.+....|..|+.|+ .+..+++.+... ..++..+||+|||+|.+++.++..++ .+.++++|.|+.++..
T Consensus 109 ~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~L 187 (328)
T KOG2904|consen 109 SQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKL 187 (328)
T ss_pred cCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHH
Confidence 567888888888888888777 334444444321 12345899999999999999999885 6899999999999999
Q ss_pred HHHHHHhhcccCcccCCCeEEEeCCC----CCCC-CCCCCccEEEEccCCC-----------------------------
Q 028016 109 SIQNIEKSAAAPLLKEGSLSVHVGDG----RKGW-PEFAPYDAIHVGAAAP----------------------------- 154 (215)
Q Consensus 109 a~~~~~~~~~~~~~~~~~v~~~~~d~----~~~~-~~~~~~D~V~~~~~~~----------------------------- 154 (215)
|.+|....++. ..+.+++-+. .... ...+++|+++++++.-
T Consensus 188 a~eN~qr~~l~-----g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~ 262 (328)
T KOG2904|consen 188 AKENAQRLKLS-----GRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYD 262 (328)
T ss_pred HHHHHHHHhhc-----CceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhH
Confidence 99999998876 6777774433 3222 2237899999998751
Q ss_pred ---CchHHHHHhcCCCcEEEEEeC
Q 028016 155 ---EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 155 ---~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
++...+.++|+|||.+.+.+.
T Consensus 263 ~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 263 NLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred HHHHHHHhhHhhcccCCeEEEEec
Confidence 111235689999999999876
No 115
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.39 E-value=1.1e-11 Score=100.72 Aligned_cols=106 Identities=19% Similarity=0.198 Sum_probs=83.8
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028016 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+++.+. ..++.+|||+|||+|.++..+++.. |..+++++|. +.+++.+++++...+.. ++++++.+|+.+
T Consensus 140 ~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~-----~rv~~~~~d~~~ 210 (306)
T TIGR02716 140 LLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVA-----DRMRGIAVDIYK 210 (306)
T ss_pred HHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCcc-----ceEEEEecCccC
Confidence 3444443 5677899999999999999999995 6689999997 78999999998887654 679999999875
Q ss_pred CCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEE
Q 028016 137 GWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~ 173 (215)
... ..+|+|++...++. +++++.+.|+|||++++.
T Consensus 211 ~~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 211 ESY--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred CCC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 333 24799887776543 345788999999999885
No 116
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.38 E-value=9.3e-12 Score=96.46 Aligned_cols=107 Identities=19% Similarity=0.154 Sum_probs=79.2
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+.....++.+|||+|||+|.++..+++.. .+++|+|+++.+++.|++++...... .++.+..+|+.
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~-----~~i~~~~~d~~ 114 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVA-----GNVEFEVNDLL 114 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEECChh
Confidence 44555554213467899999999999999998763 68999999999999999988765432 47899999986
Q ss_pred CCCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEE
Q 028016 136 KGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIP 173 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~ 173 (215)
... ++||+|++...+.++ +.++.+.+++++.+.++
T Consensus 115 ~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 115 SLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 643 689999987766443 24556677766655543
No 117
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.38 E-value=5.7e-12 Score=102.13 Aligned_cols=116 Identities=14% Similarity=0.146 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028016 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
+.......+...+.++.+|||+|||+|..+..+++.+....+|+++|+|+.|++.+++++.... ...++.++++|
T Consensus 49 il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-----p~~~v~~i~gD 123 (301)
T TIGR03438 49 ILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-----PQLEVHGICAD 123 (301)
T ss_pred HHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-----CCceEEEEEEc
Confidence 3444444454446677899999999999999999886323789999999999999998876532 11356778899
Q ss_pred CCCCCCCCCCc----c-EEEEccCCCC--------chHHHHHhcCCCcEEEEEe
Q 028016 134 GRKGWPEFAPY----D-AIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 134 ~~~~~~~~~~~----D-~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+.......+ + ++++...+.. +++.+.+.|+|||.+++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 124 FTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 87642211222 2 3344444432 3467889999999999855
No 118
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.38 E-value=1.2e-11 Score=94.75 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=64.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
...++.+|||+|||+|..+..+++.+ +..+++|+|+|+.+++.|++++ .++.+..+|+.+ ....++|
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~-----------~~~~~~~~d~~~-~~~~~sf 106 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL-----------PNINIIQGSLFD-PFKDNFF 106 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC-----------CCCcEEEeeccC-CCCCCCE
Confidence 35667899999999999999998874 3478999999999999998753 346677888776 3344799
Q ss_pred cEEEEccCCCCch
Q 028016 145 DAIHVGAAAPEIP 157 (215)
Q Consensus 145 D~V~~~~~~~~~~ 157 (215)
|+|++...++++.
T Consensus 107 D~V~~~~vL~hl~ 119 (204)
T TIGR03587 107 DLVLTKGVLIHIN 119 (204)
T ss_pred EEEEECChhhhCC
Confidence 9999999887653
No 119
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.37 E-value=8.9e-12 Score=92.74 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. ..+++++.+|+.
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~ 69 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDAL 69 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchh
Confidence 44556554 6778899999999999999999873 7899999999999999988743 158899999998
Q ss_pred CCCCCCCCccEEEEccCCCCchHHHHHh-----cCCCcEEEEE
Q 028016 136 KGWPEFAPYDAIHVGAAAPEIPQALIDQ-----LKPGGRMVIP 173 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~~~~~~~~-----Lk~gG~lv~~ 173 (215)
+.......||.|+++.+++...+.+.++ +.++|.+++.
T Consensus 70 ~~~~~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 70 KFDLPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred cCCccccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEE
Confidence 7655435699999998886433322222 3467777774
No 120
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.37 E-value=1.2e-12 Score=108.23 Aligned_cols=134 Identities=10% Similarity=-0.028 Sum_probs=101.5
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC---------
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--------- 140 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--------- 140 (215)
.+|||++||+|.++..+++.. .+|+++|+++.+++.+++++..++. .++.++.+|+.+....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~~~ 269 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI------DNVQIIRMSAEEFTQAMNGVREFRR 269 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHhhcccccc
Confidence 479999999999999998875 5899999999999999999988664 4789999997653221
Q ss_pred -------CCCccEEEEccCCCCchHHH-HHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccCcccc
Q 028016 141 -------FAPYDAIHVGAAAPEIPQAL-IDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQL 212 (215)
Q Consensus 141 -------~~~~D~V~~~~~~~~~~~~~-~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 212 (215)
...||+|+.+++-..+.+.+ ..+.+|++.++++++.... .+.+.....+ |.......+.+.|.|++.|.+
T Consensus 270 ~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tl-aRDl~~L~~~-Y~l~~v~~~DmFP~T~HvE~v 347 (353)
T TIGR02143 270 LKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETL-KANLEQLSET-HRVERFALFDQFPYTHHMECG 347 (353)
T ss_pred ccccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHH-HHHHHHHhcC-cEEEEEEEcccCCCCCcEEEE
Confidence 02389999999966655544 4455788888888765421 2222222233 999999999999999999877
Q ss_pred CC
Q 028016 213 RG 214 (215)
Q Consensus 213 ~~ 214 (215)
..
T Consensus 348 ~l 349 (353)
T TIGR02143 348 VL 349 (353)
T ss_pred EE
Confidence 54
No 121
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.36 E-value=9.8e-12 Score=96.02 Aligned_cols=101 Identities=23% Similarity=0.172 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc---------CcccCCCeEEEeCCCCC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA---------PLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---------~~~~~~~v~~~~~d~~~ 136 (215)
..++.+|||+|||.|..+..++.+ | .+|+|+|+|+.+++.+.+. .+.. ......++++.++|+.+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~-G--~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ-G--HEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC-C--CeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECcccC
Confidence 456789999999999999999987 3 7899999999999986432 1111 00123578999999887
Q ss_pred CCCC-CCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEE
Q 028016 137 GWPE-FAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVI 172 (215)
Q Consensus 137 ~~~~-~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~ 172 (215)
..+. .+.||.|+....+.++ .+.+.++|+|||.+++
T Consensus 109 l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 109 LTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 5432 2579999987766555 3568899999996443
No 122
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.35 E-value=1.5e-12 Score=107.91 Aligned_cols=151 Identities=12% Similarity=0.043 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHHhcCC-CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE
Q 028016 51 APHMHATCLQLLEENLK-PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 129 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~ 129 (215)
.+.....+++.+...+. .+.+|||++||+|.++..+++.. .+|+++|.++.+++.+++++..++. .++.+
T Consensus 188 N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~ 258 (362)
T PRK05031 188 NAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI------DNVQI 258 (362)
T ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC------CcEEE
Confidence 33344455544433232 23579999999999999888874 6899999999999999999988764 48999
Q ss_pred EeCCCCCCCCC----------------CCCccEEEEccCCCCchHHH-HHhcCCCcEEEEEeCCCc--eeEEEEEEcCCC
Q 028016 130 HVGDGRKGWPE----------------FAPYDAIHVGAAAPEIPQAL-IDQLKPGGRMVIPVGNIF--QDLKVVDKNQDG 190 (215)
Q Consensus 130 ~~~d~~~~~~~----------------~~~~D~V~~~~~~~~~~~~~-~~~Lk~gG~lv~~~~~~~--~~~~~~~~~~~~ 190 (215)
+.+|+.+.... ...||+|+.+++-..+.+.+ ..+.++++.++++++... ..+..+. .
T Consensus 259 ~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~tlarDl~~L~---~- 334 (362)
T PRK05031 259 IRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPETLCENLETLS---Q- 334 (362)
T ss_pred EECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHHHHHHHHHHc---C-
Confidence 99998653210 12589999999976666555 344467888888876632 1222222 2
Q ss_pred ceEEEeeceEEEeecccCccccCC
Q 028016 191 SLSIWSETSVRYVPLTSRDAQLRG 214 (215)
Q Consensus 191 ~~~~~~~~~~~~~p~~~~~~~~~~ 214 (215)
.|.......+.+.|.|++.|.+..
T Consensus 335 gY~l~~v~~~DmFPqT~HvE~v~l 358 (362)
T PRK05031 335 THKVERFALFDQFPYTHHMECGVL 358 (362)
T ss_pred CcEEEEEEEcccCCCCCcEEEEEE
Confidence 589999999999999999887643
No 123
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.32 E-value=8.3e-12 Score=104.31 Aligned_cols=105 Identities=20% Similarity=0.133 Sum_probs=81.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----CC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~ 141 (215)
..++.+|||+|||+|.+++.++.. + ..+++++|+|+.+++.+++++..++.. ..+++++.+|+.+... ..
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~-g-a~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~~~l~~~~~~~ 291 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDRG 291 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHHHHHHHHHhcC
Confidence 345789999999999998876643 3 368999999999999999999887642 1378999999876432 23
Q ss_pred CCccEEEEccCCC---------------CchHHHHHhcCCCcEEEEEeCC
Q 028016 142 APYDAIHVGAAAP---------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 142 ~~~D~V~~~~~~~---------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
++||+|+++++.- .+...+.++|+|||.|++.+++
T Consensus 292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 5899999998751 1123467899999999986654
No 124
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.32 E-value=1.3e-11 Score=106.24 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ..++.+|||+|||+|..+..+++.. .+++++|+++.+++.+++.... ..++.++++|+.
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~--------~~~i~~~~~d~~ 93 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGH--------YKNVKFMCADVT 93 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEeccc
Confidence 44455554 4456799999999999999999874 6899999999999887653211 157889999886
Q ss_pred CC--CCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEE
Q 028016 136 KG--WPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIP 173 (215)
Q Consensus 136 ~~--~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~ 173 (215)
.. ....++||+|++...++++ ++++.+.|||||++++.
T Consensus 94 ~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 94 SPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred ccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 32 2233789999999877653 35678999999999885
No 125
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=4.6e-12 Score=97.93 Aligned_cols=132 Identities=22% Similarity=0.251 Sum_probs=106.7
Q ss_pred CccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc
Q 028016 40 PMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 119 (215)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 119 (215)
.+.......|.++...+.++.+|. +.||.+|+|-|+|+|+++.++++.++|.++++.+|......+.|.+-++..++.
T Consensus 79 Tl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~ 156 (314)
T KOG2915|consen 79 TLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG 156 (314)
T ss_pred hhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC
Confidence 344555666776667889999998 999999999999999999999999999999999999999999999999998876
Q ss_pred CcccCCCeEEEeCCCCCC-CC-CCCCccEEEEccCCCCc-hHHHHHhcCCCc-EEEEEeCCCc
Q 028016 120 PLLKEGSLSVHVGDGRKG-WP-EFAPYDAIHVGAAAPEI-PQALIDQLKPGG-RMVIPVGNIF 178 (215)
Q Consensus 120 ~~~~~~~v~~~~~d~~~~-~~-~~~~~D~V~~~~~~~~~-~~~~~~~Lk~gG-~lv~~~~~~~ 178 (215)
+++++.+-|+... +. ....+|.|+.+.+.++. +.-+.+.||.+| +|+.-.|...
T Consensus 157 -----~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csFSPCIE 214 (314)
T KOG2915|consen 157 -----DNVTVTHRDVCGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSFSPCIE 214 (314)
T ss_pred -----cceEEEEeecccCCccccccccceEEEcCCChhhhhhhhHHHhhhcCceEEeccHHHH
Confidence 7999999988653 22 24689999999887653 345566888877 6655555543
No 126
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.32 E-value=2.4e-11 Score=92.01 Aligned_cols=94 Identities=26% Similarity=0.287 Sum_probs=70.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC------
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~------ 138 (215)
.++++.+|||+|||+|.++..+++...+.++++++|+++.+ .. .++.++.+|..+..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~------~~i~~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI------ENVDFIRGDFTDEEVLNKIR 91 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC------CCceEEEeeCCChhHHHHHH
Confidence 36788999999999999999998886555789999999854 11 46778888876532
Q ss_pred --CCCCCccEEEEccCC-----------------CCchHHHHHhcCCCcEEEEEeC
Q 028016 139 --PEFAPYDAIHVGAAA-----------------PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~-----------------~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
...++||+|+++... ..+++.+.+.|+|||.+++.+.
T Consensus 92 ~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 92 ERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 123679999987532 1244668899999999999653
No 127
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.32 E-value=3.6e-11 Score=93.98 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=79.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~ 144 (215)
..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.... ..+++...+...... ..++|
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~f 115 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESG-------LKIDYRQTTAEELAAEHPGQF 115 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcC-------CceEEEecCHHHhhhhcCCCc
Confidence 4567899999999999999888763 689999999999999998876533 256777777655431 23689
Q ss_pred cEEEEccCCCC------chHHHHHhcCCCcEEEEEeCC
Q 028016 145 DAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+|++...+++ +++.+.+.|+|||.+++..++
T Consensus 116 D~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 116 DVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred cEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 99998776544 446788999999999987654
No 128
>PHA03412 putative methyltransferase; Provisional
Probab=99.31 E-value=3.7e-11 Score=92.55 Aligned_cols=92 Identities=12% Similarity=0.026 Sum_probs=68.5
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHhhcccCccc
Q 028016 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG--PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 123 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~ 123 (215)
|++.+.+.+...+. +. ...+.+|||+|||+|.++..+++.+. +..+++++|+++.+++.|++++
T Consensus 31 GqFfTP~~iAr~~~--i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------- 96 (241)
T PHA03412 31 GAFFTPIGLARDFT--ID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------- 96 (241)
T ss_pred CccCCCHHHHHHHH--Hh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----------
Confidence 55666555444443 12 23367999999999999999987642 2368999999999999999764
Q ss_pred CCCeEEEeCCCCCCCCCCCCccEEEEccCC
Q 028016 124 EGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 124 ~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
.++.++.+|+...... ++||+|++++++
T Consensus 97 -~~~~~~~~D~~~~~~~-~~FDlIIsNPPY 124 (241)
T PHA03412 97 -PEATWINADALTTEFD-TLFDMAISNPPF 124 (241)
T ss_pred -cCCEEEEcchhccccc-CCccEEEECCCC
Confidence 3577888888754333 689999999986
No 129
>PRK00811 spermidine synthase; Provisional
Probab=99.31 E-value=1.9e-11 Score=98.16 Aligned_cols=108 Identities=21% Similarity=0.195 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
....+||++|||+|..+..+++.. ...+|+++|+++.+++.|++.+...... ....++++++.+|+..... ..++||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGG-AYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccc-cccCCceEEEECchHHHHhhCCCccc
Confidence 345799999999999999998763 3368999999999999999988653211 0123689999999876443 236899
Q ss_pred EEEEccCCC----------CchHHHHHhcCCCcEEEEEeCC
Q 028016 146 AIHVGAAAP----------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++...+ .+.+.+.+.|+|||++++...+
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 999986432 2346788999999999986543
No 130
>PLN02672 methionine S-methyltransferase
Probab=99.30 E-value=5.8e-11 Score=108.86 Aligned_cols=142 Identities=15% Similarity=0.067 Sum_probs=101.0
Q ss_pred CCcCCCccccCCcccchhHHHHHHHHHHHhcCC---CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 028016 35 PYVDSPMAIGYNATISAPHMHATCLQLLEENLK---PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111 (215)
Q Consensus 35 ~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 111 (215)
.|....+....+..++.|. ...+++.+..+.. ++.+|||+|||+|.+++.+++.. +..+++++|+|+.+++.|++
T Consensus 83 ~F~~l~~~V~p~VLIPRpe-TE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~ 160 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDW-SFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWI 160 (1082)
T ss_pred EecCCceeeCCCcccCchh-HHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 4445556667777888877 3344444542211 24689999999999999999985 55799999999999999999
Q ss_pred HHHhhcccCc----------ccCCCeEEEeCCCCCCCCCC-CCccEEEEccCCC--------------C-----------
Q 028016 112 NIEKSAAAPL----------LKEGSLSVHVGDGRKGWPEF-APYDAIHVGAAAP--------------E----------- 155 (215)
Q Consensus 112 ~~~~~~~~~~----------~~~~~v~~~~~d~~~~~~~~-~~~D~V~~~~~~~--------------~----------- 155 (215)
|+..++.... ...++++++++|+.+..... ..||+|+++++.- +
T Consensus 161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p 240 (1082)
T PLN02672 161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN 240 (1082)
T ss_pred HHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence 9987543100 11147999999988765432 3699999998630 0
Q ss_pred -------------------chHHHHHhcCCCcEEEEEeCCCc
Q 028016 156 -------------------IPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 156 -------------------~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
+.+.+.++|+|||++++.++...
T Consensus 241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q 282 (1082)
T PLN02672 241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRP 282 (1082)
T ss_pred cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH
Confidence 11345679999999999987653
No 131
>PLN02366 spermidine synthase
Probab=99.30 E-value=4.3e-11 Score=96.78 Aligned_cols=106 Identities=21% Similarity=0.240 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCCCc
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~ 144 (215)
....+||++|||.|..+..+++. .+..+++.+|+++.+++.+++.+..... .+..++++++.+|+..... ..+.|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCC
Confidence 44689999999999999999876 3347899999999999999998865321 1334789999999765432 13689
Q ss_pred cEEEEccCCC----------CchHHHHHhcCCCcEEEEEeC
Q 028016 145 DAIHVGAAAP----------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 145 D~V~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
|+|+++...+ .+.+.+.+.|+|||+++....
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 9999986543 245678999999999987443
No 132
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=8e-11 Score=86.83 Aligned_cols=96 Identities=24% Similarity=0.291 Sum_probs=74.1
Q ss_pred CcccchhHHHHHHHHHHH-hcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028016 46 NATISAPHMHATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~-~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
.|+.+.+.+.+.++.... ...-.+.+|+|+|||||.++...+-. |+ .+|+|+|+++++++.+++|.....
T Consensus 22 EQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~l~------- 92 (198)
T COG2263 22 EQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEELL------- 92 (198)
T ss_pred eecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHhhC-------
Confidence 344444445555554432 12344678999999999999988866 67 799999999999999999998732
Q ss_pred CCeEEEeCCCCCCCCCCCCccEEEEccCC
Q 028016 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
.++++..+|+.+.. ..+|.++.++++
T Consensus 93 g~v~f~~~dv~~~~---~~~dtvimNPPF 118 (198)
T COG2263 93 GDVEFVVADVSDFR---GKFDTVIMNPPF 118 (198)
T ss_pred CceEEEEcchhhcC---CccceEEECCCC
Confidence 58999999998865 568999999887
No 133
>PRK06202 hypothetical protein; Provisional
Probab=99.29 E-value=5.7e-11 Score=92.86 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=67.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028016 67 KPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
.++.+|||+|||+|.++..+++.. ++..+++|+|+++.+++.|+++... .++.+...+........++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------PGVTFRQAVSDELVAEGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---------CCCeEEEEecccccccCCC
Confidence 456799999999999998887643 3446999999999999999876533 2445555444332223478
Q ss_pred ccEEEEccCCCCchH--------HHHHhcCCCcEEE
Q 028016 144 YDAIHVGAAAPEIPQ--------ALIDQLKPGGRMV 171 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~--------~~~~~Lk~gG~lv 171 (215)
||+|+++..++++.+ ++.++++ ++.++
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEE
Confidence 999999998877653 4556666 43433
No 134
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.28 E-value=7.2e-11 Score=100.41 Aligned_cols=105 Identities=25% Similarity=0.284 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-CCCCCc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~ 144 (215)
..++.+|||+|||.|+-+..++..++..+.+++.|+++..++..++++...+. .++.+...|..... ...+.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------SNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCchhhhhhhchhhc
Confidence 67899999999999999999999987778999999999999999999998765 57888888876432 112579
Q ss_pred cEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCC
Q 028016 145 DAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|.|+++.++. .+++.+.++|||||.|++++++
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 9999888763 1224567899999999999876
No 135
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.28 E-value=2.4e-11 Score=91.34 Aligned_cols=106 Identities=25% Similarity=0.337 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCC--CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028016 53 HMHATCLQLLEENLKP--GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 53 ~~~~~~l~~l~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
.+..+.++.+. +++ ..-|||||||+|..+..+... | ..++|+|+|+.|++.|.+.-- .-+++
T Consensus 35 em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~-G--h~wiGvDiSpsML~~a~~~e~-----------egdli 98 (270)
T KOG1541|consen 35 EMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDS-G--HQWIGVDISPSMLEQAVEREL-----------EGDLI 98 (270)
T ss_pred HHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccC-C--ceEEeecCCHHHHHHHHHhhh-----------hcCee
Confidence 34677788887 554 678999999999999888766 3 799999999999999986321 23577
Q ss_pred eCCCCCCCC-CCCCccEEEEccCCCCch-----------------HHHHHhcCCCcEEEEEe
Q 028016 131 VGDGRKGWP-EFAPYDAIHVGAAAPEIP-----------------QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 131 ~~d~~~~~~-~~~~~D~V~~~~~~~~~~-----------------~~~~~~Lk~gG~lv~~~ 174 (215)
.+|.-...+ ..++||.+++...++++. ..+..+|++|++.++.+
T Consensus 99 l~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 99 LCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred eeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 777665443 448999998777654433 23677888888888754
No 136
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=8.6e-12 Score=92.85 Aligned_cols=97 Identities=16% Similarity=0.214 Sum_probs=75.9
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE-EEeCCCCCCC-CCCCCccE
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS-VHVGDGRKGW-PEFAPYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~~D~ 146 (215)
...|||+|||||..-...-- .|..+|+++|.++.|-+.+.+.+.++.- .++. +++++..+.. ..+++||.
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~------~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKP------LQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred ccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccC------cceEEEEeechhcCcccccCCeee
Confidence 35689999999987654421 2457999999999999999998887632 5666 8899988765 34589999
Q ss_pred EEEccCCC------CchHHHHHhcCCCcEEEEE
Q 028016 147 IHVGAAAP------EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 147 V~~~~~~~------~~~~~~~~~Lk~gG~lv~~ 173 (215)
|++...+- ..++++.++|+|||++++-
T Consensus 149 VV~TlvLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 149 VVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 98887652 3557889999999999983
No 137
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.27 E-value=4.9e-11 Score=90.72 Aligned_cols=96 Identities=23% Similarity=0.325 Sum_probs=72.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 143 (215)
+.++.+|||+|||+|.++..+++..+ ..++++|+++.+++.+++ .+++++.+|+.... ...++
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~-------------~~~~~~~~d~~~~l~~~~~~s 75 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA-------------RGVNVIQGDLDEGLEAFPDKS 75 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH-------------cCCeEEEEEhhhcccccCCCC
Confidence 55678999999999999988877632 578999999999888753 24567777775422 23368
Q ss_pred ccEEEEccCCCCch---HHHHHhcCCCcEEEEEeCC
Q 028016 144 YDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~~~~ 176 (215)
||+|++...++++. ..+.++++++|.+++++++
T Consensus 76 fD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 76 FDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred cCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence 99999999887654 3455667778888887766
No 138
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.27 E-value=3.6e-11 Score=96.05 Aligned_cols=105 Identities=21% Similarity=0.214 Sum_probs=79.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccEE
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~V 147 (215)
..+||++|||+|..+..+++.. +..+++++|+++.+++.+++.+..... .+...+++++.+|...... ..++||+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccEE
Confidence 4599999999999998888763 347899999999999999998765431 1333678888888755322 13689999
Q ss_pred EEccCCC----------CchHHHHHhcCCCcEEEEEeCC
Q 028016 148 HVGAAAP----------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 148 ~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+++...+ .+.+.+.+.|+|||.+++...+
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 9876522 2346788999999999986543
No 139
>PHA03411 putative methyltransferase; Provisional
Probab=99.26 E-value=1.3e-10 Score=91.54 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=70.0
Q ss_pred CCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028016 45 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 45 ~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
.|++.+.+.++..++ +. .....+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++
T Consensus 45 ~G~FfTP~~i~~~f~--~~--~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~----------- 108 (279)
T PHA03411 45 SGAFFTPEGLAWDFT--ID--AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL----------- 108 (279)
T ss_pred ceeEcCCHHHHHHHH--hc--cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----------
Confidence 466665555443332 22 3445799999999999999888774 2368999999999999998753
Q ss_pred CCeEEEeCCCCCCCCCCCCccEEEEccCCCC
Q 028016 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE 155 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~ 155 (215)
.++.++.+|+...... ++||+|++++++.+
T Consensus 109 ~~v~~v~~D~~e~~~~-~kFDlIIsNPPF~~ 138 (279)
T PHA03411 109 PEAEWITSDVFEFESN-EKFDVVISNPPFGK 138 (279)
T ss_pred cCCEEEECchhhhccc-CCCcEEEEcCCccc
Confidence 3678899998875433 68999999988743
No 140
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.26 E-value=1.5e-10 Score=90.27 Aligned_cols=92 Identities=23% Similarity=0.337 Sum_probs=68.9
Q ss_pred HHHHHHHHHh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028016 55 HATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 55 ~~~~l~~l~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
...++..+.. ...++.+|||+|||+|..+..+++.. ..++++|+++.+++.|++++...+.. .++.+..+|
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~-----~~i~~~~~d 120 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLA-----GNITFEVGD 120 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCc-----cCcEEEEcC
Confidence 3444555542 13567899999999999999998873 56999999999999999988765432 478888888
Q ss_pred CCCCCCCCCCccEEEEccCCCCch
Q 028016 134 GRKGWPEFAPYDAIHVGAAAPEIP 157 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~~~ 157 (215)
... ..++||+|++...++++.
T Consensus 121 ~~~---~~~~fD~v~~~~~l~~~~ 141 (230)
T PRK07580 121 LES---LLGRFDTVVCLDVLIHYP 141 (230)
T ss_pred chh---ccCCcCEEEEcchhhcCC
Confidence 432 236899999988775533
No 141
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.26 E-value=5.6e-11 Score=92.27 Aligned_cols=100 Identities=19% Similarity=0.255 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCccE
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~ 146 (215)
++.+|||+|||+|.++..+++.. .+++++|.++.+++.+++++...+. .++.+..++..+.... .++||+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~ 115 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVEDLAEKGAKSFDV 115 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhcCCCCCccE
Confidence 47899999999999999888763 5699999999999999988776432 2578888887654332 268999
Q ss_pred EEEccCCCC------chHHHHHhcCCCcEEEEEeCC
Q 028016 147 IHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 147 V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|++...+++ +++.+.+.|++||.+++...+
T Consensus 116 i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 116 VTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred EEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 998865543 446788999999999987653
No 142
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.26 E-value=4.2e-11 Score=107.17 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
.++.+|||+|||+|.+++.+++. |. .+|+++|+|+.+++.+++++..++.. ..+++++++|+.+... ..++||
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga-~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GA-KSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLAWLKEAREQFD 610 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHHHHHHcCCCcC
Confidence 35789999999999999999986 43 57999999999999999999887642 1378999999765331 136899
Q ss_pred EEEEccCCC-----------------CchHHHHHhcCCCcEEEEEeCCC
Q 028016 146 AIHVGAAAP-----------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~-----------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+|+++++.- .+...+.++|+|||.++++++..
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred EEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999998741 13356788999999999876654
No 143
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.25 E-value=1.5e-10 Score=91.74 Aligned_cols=98 Identities=19% Similarity=0.303 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHH--HHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSI--QNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~--~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
-.|.+|||||||+|+.+..++.. |+ ..|+|+|.+........ +.+. +.. ..+......+.+. +..+.|
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~-GA-~~ViGiDP~~lf~~QF~~i~~~l--g~~-----~~~~~lplgvE~L-p~~~~F 183 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGR-GA-KSVIGIDPSPLFYLQFEAIKHFL--GQD-----PPVFELPLGVEDL-PNLGAF 183 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhc-CC-CEEEEECCChHHHHHHHHHHHHh--CCC-----ccEEEcCcchhhc-cccCCc
Confidence 34789999999999999999988 56 68999999887654422 1221 110 1222222223332 335889
Q ss_pred cEEEEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028016 145 DAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 145 D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
|+|+|.+++-| .+..+...|++||.|++.+
T Consensus 184 DtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 184 DTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred CEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 99999999865 3468899999999999854
No 144
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.24 E-value=1.8e-10 Score=93.53 Aligned_cols=97 Identities=23% Similarity=0.224 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028016 54 MHATCLQLLEEN-LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 54 ~~~~~l~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
....+++.+... ..++.+|||+|||+|.++..+++. + .+|+++|+|+.+++.+++++...... .....++.+...
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g--~~V~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~f~~~ 204 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-G--AIVSASDISAAMVAEAERRAKEALAA-LPPEVLPKFEAN 204 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcccc-cccccceEEEEc
Confidence 345556665421 125689999999999999999986 3 68999999999999999987653211 011146788888
Q ss_pred CCCCCCCCCCCccEEEEccCCCCch
Q 028016 133 DGRKGWPEFAPYDAIHVGAAAPEIP 157 (215)
Q Consensus 133 d~~~~~~~~~~~D~V~~~~~~~~~~ 157 (215)
|.... .+.||+|++...+.+++
T Consensus 205 Dl~~l---~~~fD~Vv~~~vL~H~p 226 (315)
T PLN02585 205 DLESL---SGKYDTVTCLDVLIHYP 226 (315)
T ss_pred chhhc---CCCcCEEEEcCEEEecC
Confidence 86542 27899999998876655
No 145
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=1.7e-10 Score=87.19 Aligned_cols=119 Identities=14% Similarity=0.035 Sum_probs=86.5
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE
Q 028016 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 129 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~ 129 (215)
+...+...+...+.. .-++.+|||++||+|.+++.++++ |. .+++++|.++.+++.+++++...+.. .++++
T Consensus 32 t~~~vrea~f~~l~~-~~~g~~vLDLfaGsG~lglea~sr-ga-~~v~~vE~~~~a~~~~~~N~~~~~~~-----~~~~~ 103 (189)
T TIGR00095 32 TTRVVRELFFNILRP-EIQGAHLLDVFAGSGLLGEEALSR-GA-KVAFLEEDDRKANQTLKENLALLKSG-----EQAEV 103 (189)
T ss_pred chHHHHHHHHHHHHH-hcCCCEEEEecCCCcHHHHHHHhC-CC-CEEEEEeCCHHHHHHHHHHHHHhCCc-----ccEEE
Confidence 333344455555542 345789999999999999999998 44 58999999999999999999887653 47889
Q ss_pred EeCCCCCCCC---CC-CCccEEEEccCCCC-chH----HHH--HhcCCCcEEEEEeCC
Q 028016 130 HVGDGRKGWP---EF-APYDAIHVGAAAPE-IPQ----ALI--DQLKPGGRMVIPVGN 176 (215)
Q Consensus 130 ~~~d~~~~~~---~~-~~~D~V~~~~~~~~-~~~----~~~--~~Lk~gG~lv~~~~~ 176 (215)
+.+|+..... .. ..||+|+.++++.. ... .+. .+|+++|.+++....
T Consensus 104 ~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 104 VRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 9999854321 11 24899999998853 222 222 368899999987654
No 146
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.22 E-value=1.4e-10 Score=78.00 Aligned_cols=95 Identities=26% Similarity=0.363 Sum_probs=74.2
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccEEEE
Q 028016 71 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAIHV 149 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~V~~ 149 (215)
+++|+|||+|..+..+++. ...+++++|.++..++.+++...... ..++.+...|..+... ..++||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhccc------ccceEEEEcChhhhccccCCceEEEEE
Confidence 4899999999999988872 34799999999999998885333221 2578888888877553 3478999999
Q ss_pred ccCCCC-------chHHHHHhcCCCcEEEEE
Q 028016 150 GAAAPE-------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 150 ~~~~~~-------~~~~~~~~Lk~gG~lv~~ 173 (215)
+..+.. +++.+.+.|++||.+++.
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 988754 345678899999999886
No 147
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.20 E-value=1.1e-10 Score=96.54 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=86.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----CCCCc
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EFAPY 144 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~ 144 (215)
|.+||++.|=||..++.++.. |. .+|+++|.|...++.|++|+.-++.. ..++.++++|+.+.+. ...+|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA-~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GA-SEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CC-CceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHHHHHHHhcCCcc
Confidence 899999999999999999876 43 59999999999999999999988753 3578999999876543 22489
Q ss_pred cEEEEccCC---------------CCchHHHHHhcCCCcEEEEEeCCCc
Q 028016 145 DAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 145 D~V~~~~~~---------------~~~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
|+|+.+++. ..+...+.++|+|||.++++++...
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 999999864 2244578899999999999887653
No 148
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.20 E-value=2.3e-10 Score=91.47 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=78.2
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028016 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
.+..+.+...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. .++
T Consensus 24 fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---------~~v 89 (272)
T PRK00274 24 FLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---------DNL 89 (272)
T ss_pred cCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---------Cce
Confidence 3455666778888775 7778899999999999999999984 4899999999999999876532 489
Q ss_pred EEEeCCCCCCCCCCCCccEEEEccCCCCchHHHHHhc
Q 028016 128 SVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQL 164 (215)
Q Consensus 128 ~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~~~~~~L 164 (215)
+++.+|+.......-.+|.|+++.+..-.-.-+.++|
T Consensus 90 ~~i~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 90 TIIEGDALKVDLSELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred EEEEChhhcCCHHHcCcceEEEeCCccchHHHHHHHH
Confidence 9999998875433112588999887644334444444
No 149
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.19 E-value=2.9e-10 Score=91.56 Aligned_cols=108 Identities=21% Similarity=0.294 Sum_probs=84.0
Q ss_pred CCcc-cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCccc
Q 028016 45 YNAT-ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 123 (215)
Q Consensus 45 ~~~~-~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~ 123 (215)
.|++ +..+.+...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+|+.+++.+++++...+..
T Consensus 14 ~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~---- 84 (294)
T PTZ00338 14 FGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLA---- 84 (294)
T ss_pred CCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCC----
Confidence 3555 467778888888876 7788999999999999999999874 68999999999999999988764422
Q ss_pred CCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchHHHHHhc
Q 028016 124 EGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQL 164 (215)
Q Consensus 124 ~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~~~~~~L 164 (215)
.+++++.+|+..... ..||.|+++.++.-.-..+.++|
T Consensus 85 -~~v~ii~~Dal~~~~--~~~d~VvaNlPY~Istpil~~ll 122 (294)
T PTZ00338 85 -SKLEVIEGDALKTEF--PYFDVCVANVPYQISSPLVFKLL 122 (294)
T ss_pred -CcEEEEECCHhhhcc--cccCEEEecCCcccCcHHHHHHH
Confidence 689999999976433 46899999887743333333333
No 150
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.19 E-value=5.1e-10 Score=86.41 Aligned_cols=119 Identities=14% Similarity=0.123 Sum_probs=84.5
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh------cccCccc
Q 028016 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS------AAAPLLK 123 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~------~~~~~~~ 123 (215)
..|.+...+ ..+. ..++.+||+.|||.|..+..++.+ | .+|+|+|+|+.+++.+.+..... +......
T Consensus 28 pnp~L~~~~-~~l~--~~~~~rvLvPgCGkg~D~~~LA~~-G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 101 (226)
T PRK13256 28 PNEFLVKHF-SKLN--INDSSVCLIPMCGCSIDMLFFLSK-G--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK 101 (226)
T ss_pred CCHHHHHHH-HhcC--CCCCCeEEEeCCCChHHHHHHHhC-C--CcEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence 344434443 3333 456789999999999999999998 4 68999999999999876532100 0000112
Q ss_pred CCCeEEEeCCCCCCCC---CCCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEEe
Q 028016 124 EGSLSVHVGDGRKGWP---EFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 124 ~~~v~~~~~d~~~~~~---~~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~ 174 (215)
..++++.++|+.+..+ ..+.||.|+....+.+++ +.+.++|+|||.+++.+
T Consensus 102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 102 GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 3588999999987643 125899999888876666 45778999999888754
No 151
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=5.7e-11 Score=100.03 Aligned_cols=145 Identities=21% Similarity=0.211 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028016 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
++...++.+. ..++.+|||+-||.|.+++.+++.. .+|+|+|+++.+++.|+++++.++. .|+.+..++
T Consensus 281 l~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i------~N~~f~~~~ 349 (432)
T COG2265 281 LYETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGI------DNVEFIAGD 349 (432)
T ss_pred HHHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEeCC
Confidence 3444455554 5677899999999999999999775 8999999999999999999999876 579999999
Q ss_pred CCCCCCC---CCCccEEEEccCCCCchHHH---HHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeeccc
Q 028016 134 GRKGWPE---FAPYDAIHVGAAAPEIPQAL---IDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTS 207 (215)
Q Consensus 134 ~~~~~~~---~~~~D~V~~~~~~~~~~~~~---~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 207 (215)
+...... ...+|.|+.+++-..+.+.+ ...++|..+++++|+... ..+.+.......+.......+...|.|+
T Consensus 350 ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~T-laRDl~~L~~~gy~i~~v~~~DmFP~T~ 428 (432)
T COG2265 350 AEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPAT-LARDLAILASTGYEIERVQPFDMFPHTH 428 (432)
T ss_pred HHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHH-HHHHHHHHHhCCeEEEEEEEeccCCCcc
Confidence 8765443 24789999999876666443 345678888888876532 1222333345566677778888889988
Q ss_pred Ccc
Q 028016 208 RDA 210 (215)
Q Consensus 208 ~~~ 210 (215)
+.+
T Consensus 429 HvE 431 (432)
T COG2265 429 HVE 431 (432)
T ss_pred ccC
Confidence 765
No 152
>PRK01581 speE spermidine synthase; Validated
Probab=99.17 E-value=2.8e-10 Score=92.92 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH--HHhhcccCcccCCCeEEEeCCCCCCCC-CCCC
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN--IEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~ 143 (215)
....+||++|||+|..+..+++. .+..+++++|+++.+++.|++. +.... ...+..++++++.+|+..... ..+.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~-~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLN-KSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhc-cccCCCCceEEEECcHHHHHHhcCCC
Confidence 33469999999999988888876 3447999999999999999962 11110 011234799999999886443 2368
Q ss_pred ccEEEEccCCC-----------CchHHHHHhcCCCcEEEEEeC
Q 028016 144 YDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 144 ~D~V~~~~~~~-----------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
||+|+++.+.+ .+.+.+.+.|+|||++++...
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99999986432 144678999999999988644
No 153
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.17 E-value=1.6e-10 Score=86.83 Aligned_cols=125 Identities=20% Similarity=0.195 Sum_probs=88.6
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCC
Q 028016 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 125 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 125 (215)
...++.-.+...+...+....-++.+|||+.||||.++..++++ |. .+|+.+|.++..+...++|++..+.. +
T Consensus 20 ~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-GA-~~v~fVE~~~~a~~~i~~N~~~l~~~-----~ 92 (183)
T PF03602_consen 20 NTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-GA-KSVVFVEKNRKAIKIIKKNLEKLGLE-----D 92 (183)
T ss_dssp TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHT-G-----G
T ss_pred CcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-CC-CeEEEEECCHHHHHHHHHHHHHhCCC-----c
Confidence 33455555677777777632146899999999999999999988 44 78999999999999999999987764 4
Q ss_pred CeEEEeCCCCCCCC----CCCCccEEEEccCCCCch--H----HHH--HhcCCCcEEEEEeCCC
Q 028016 126 SLSVHVGDGRKGWP----EFAPYDAIHVGAAAPEIP--Q----ALI--DQLKPGGRMVIPVGNI 177 (215)
Q Consensus 126 ~v~~~~~d~~~~~~----~~~~~D~V~~~~~~~~~~--~----~~~--~~Lk~gG~lv~~~~~~ 177 (215)
+..++..|....+. ...+||+|+++++...-. . .+. .+|+++|.+++.+...
T Consensus 93 ~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 93 KIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp GEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred ceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 68889988654331 237899999999986532 2 333 6789999999987554
No 154
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.16 E-value=2.7e-10 Score=86.52 Aligned_cols=101 Identities=24% Similarity=0.290 Sum_probs=79.6
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCCCCccE
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFAPYDA 146 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~ 146 (215)
..+||||||.|.....+|.. .|+..++|+|++...+..+.+++...+. .|+.++++|+...+ ...+++|.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~-~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------~Nv~~~~~da~~~l~~~~~~~~v~~ 91 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKR-NPDINFIGIEIRKKRVAKALRKAEKRGL------KNVRFLRGDARELLRRLFPPGSVDR 91 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHH-STTSEEEEEES-HHHHHHHHHHHHHHTT------SSEEEEES-CTTHHHHHSTTTSEEE
T ss_pred CeEEEecCCCCHHHHHHHHH-CCCCCEEEEecchHHHHHHHHHHHhhcc------cceEEEEccHHHHHhhcccCCchhe
Confidence 38999999999999999999 4789999999999999999998888665 69999999987632 23478999
Q ss_pred EEEccCCCC--------------chHHHHHhcCCCcEEEEEeCCC
Q 028016 147 IHVGAAAPE--------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 147 V~~~~~~~~--------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+...+-++ +++.+.+.|+|||.|.+.+...
T Consensus 92 i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 92 IYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE 136 (195)
T ss_dssp EEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred EEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence 988887542 4467899999999999988763
No 155
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.16 E-value=4.2e-10 Score=90.84 Aligned_cols=114 Identities=27% Similarity=0.276 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028016 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
.|. +++++-.+. ++++|..|||--||||++...+.-. | ..++|+|++..|+.-|+.|++..+. ....+.
T Consensus 182 ~P~-lAR~mVNLa-~v~~G~~vlDPFcGTGgiLiEagl~-G--~~viG~Did~~mv~gak~Nl~~y~i------~~~~~~ 250 (347)
T COG1041 182 DPR-LARAMVNLA-RVKRGELVLDPFCGTGGILIEAGLM-G--ARVIGSDIDERMVRGAKINLEYYGI------EDYPVL 250 (347)
T ss_pred CHH-HHHHHHHHh-ccccCCEeecCcCCccHHHHhhhhc-C--ceEeecchHHHHHhhhhhhhhhhCc------CceeEE
Confidence 344 455555554 5889999999999999999888755 4 7999999999999999999988764 344444
Q ss_pred eC-CCCCCCCCCCCccEEEEccCC---------------CCchHHHHHhcCCCcEEEEEeC
Q 028016 131 VG-DGRKGWPEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 131 ~~-d~~~~~~~~~~~D~V~~~~~~---------------~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
.. |+.........+|.|+++++. ..+++.+.++|++||+++++.+
T Consensus 251 ~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 251 KVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 44 887766554569999999875 1234567899999999999988
No 156
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.15 E-value=9.1e-10 Score=87.39 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=81.4
Q ss_pred Cc-ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028016 46 NA-TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 46 ~~-~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
|+ ++..+.+...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. .
T Consensus 8 GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~--------~ 74 (258)
T PRK14896 8 GQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA--------A 74 (258)
T ss_pred CccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc--------C
Confidence 44 3467778888888875 7778999999999999999999883 6899999999999999987743 1
Q ss_pred CCeEEEeCCCCCCCCCCCCccEEEEccCCCCchHHHHHhcC
Q 028016 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLK 165 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk 165 (215)
.+++++.+|+..... ..||.|+++.++.-..+.+.++++
T Consensus 75 ~~v~ii~~D~~~~~~--~~~d~Vv~NlPy~i~s~~~~~l~~ 113 (258)
T PRK14896 75 GNVEIIEGDALKVDL--PEFNKVVSNLPYQISSPITFKLLK 113 (258)
T ss_pred CCEEEEEeccccCCc--hhceEEEEcCCcccCcHHHHHHHh
Confidence 589999999877543 358999999887543233333343
No 157
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.15 E-value=6e-11 Score=93.93 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=88.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC-----CCC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-----WPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~-----~~~ 140 (215)
.+++..++++|||-|+..+..-+. |- +.++|+|+.+..++.|+++.+..........-.+.|+.+|.... .+.
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA-gI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA-GI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhh-cc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 577889999999999888777665 34 78999999999999999998764321000012467888887642 222
Q ss_pred CCC-ccEEEEccCCCCc----------hHHHHHhcCCCcEEEEEeCCCceeEEEEEEcCCCceE
Q 028016 141 FAP-YDAIHVGAAAPEI----------PQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLS 193 (215)
Q Consensus 141 ~~~-~D~V~~~~~~~~~----------~~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~ 193 (215)
.++ ||+|-|...+|.. +.++.++|+|||+++-++|+.......++......|.
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~g 256 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFG 256 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhc
Confidence 234 9999888877643 3567899999999999999975333333333333443
No 158
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.14 E-value=2.7e-10 Score=93.04 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=76.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCc----ccCCCeEEEeCCCCCC-----C
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL----LKEGSLSVHVGDGRKG-----W 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~----~~~~~v~~~~~d~~~~-----~ 138 (215)
++.+|||+|||-|+...-.... +. ..++|+|++...++.|++++.+...... ...-...++.+|.... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999998877766654 34 7999999999999999999944321100 0012557788887632 2
Q ss_pred CC-CCCccEEEEccCCCCch----------HHHHHhcCCCcEEEEEeCCCcee
Q 028016 139 PE-FAPYDAIHVGAAAPEIP----------QALIDQLKPGGRMVIPVGNIFQD 180 (215)
Q Consensus 139 ~~-~~~~D~V~~~~~~~~~~----------~~~~~~Lk~gG~lv~~~~~~~~~ 180 (215)
.. ...||+|-|...+|... .++.+.|+|||+++.++++....
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 22 25899999999887544 57889999999999999987543
No 159
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.13 E-value=1.5e-11 Score=93.00 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028016 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
-|..+.+++..+. ..+-.++||+|||||..+..+-... ..++|+|+|++|++.|.++- . -=.+.
T Consensus 110 vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg----~-------YD~L~ 173 (287)
T COG4976 110 VPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKG----L-------YDTLY 173 (287)
T ss_pred cHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhcc----c-------hHHHH
Confidence 3445566666554 4556799999999999999998876 78999999999999987531 1 01222
Q ss_pred eCCCCCCC--CCCCCccEEEEccCC------CCchHHHHHhcCCCcEEEEEeCC
Q 028016 131 VGDGRKGW--PEFAPYDAIHVGAAA------PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 131 ~~d~~~~~--~~~~~~D~V~~~~~~------~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+++...+. ...++||+|.+..++ +.++..+...|+|||.+.+++-.
T Consensus 174 ~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 174 VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence 33332222 233789999877654 45566788999999999998744
No 160
>PRK03612 spermidine synthase; Provisional
Probab=99.13 E-value=3.2e-10 Score=98.34 Aligned_cols=108 Identities=17% Similarity=0.169 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH--HHhhcccCcccCCCeEEEeCCCCCCCC-CCCC
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN--IEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~ 143 (215)
++..+|||+|||+|..+..+++. ++..+++++|+|+.+++.++++ +..... ..+..++++++.+|..+... ..++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~-~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNG-GALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhc-cccCCCceEEEEChHHHHHHhCCCC
Confidence 44679999999999999999875 3337999999999999999983 322110 01233689999999876432 2368
Q ss_pred ccEEEEccCCCC-----------chHHHHHhcCCCcEEEEEeCC
Q 028016 144 YDAIHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~~~-----------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
||+|+++.+.+. +.+.+.+.|+|||.+++...+
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 999999875432 346788999999999986543
No 161
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.13 E-value=7.6e-10 Score=83.00 Aligned_cols=118 Identities=22% Similarity=0.200 Sum_probs=80.7
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCe---------EEEEecChHHHHHHHHHHHhhcc
Q 028016 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGR---------AVGVEHIPELVVSSIQNIEKSAA 118 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~---------v~~~D~s~~~~~~a~~~~~~~~~ 118 (215)
....|.+...++.... .+++..|||-.||+|.+.+..+... .+.. ++|+|+++.+++.+++|+...+.
T Consensus 10 a~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~ 86 (179)
T PF01170_consen 10 APLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV 86 (179)
T ss_dssp TSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhccc
Confidence 3345665566665544 7788999999999999999888775 3333 89999999999999999988776
Q ss_pred cCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC--------------chHHHHHhcCCCcEEEEE
Q 028016 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE--------------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 119 ~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~--------------~~~~~~~~Lk~gG~lv~~ 173 (215)
. ..+.+.+.|+.......+.+|.|++++++-. +.+.+.++|++...++++
T Consensus 87 ~-----~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 87 E-----DYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp C-----GGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred C-----CceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 4 5789999998876644478999999998732 234567788884444443
No 162
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.13 E-value=1.1e-09 Score=86.78 Aligned_cols=108 Identities=18% Similarity=0.126 Sum_probs=83.3
Q ss_pred Cc-ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028016 46 NA-TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 46 ~~-~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
|+ ++..+.+...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. .
T Consensus 8 gq~fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--------~ 74 (253)
T TIGR00755 8 GQNFLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--------Y 74 (253)
T ss_pred CCccCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--------C
Confidence 44 4567777888888876 6778899999999999999999985 4699999999999999877642 1
Q ss_pred CCeEEEeCCCCCCCCCCCCcc---EEEEccCCCCchHHHHHhc-CCCc
Q 028016 125 GSLSVHVGDGRKGWPEFAPYD---AIHVGAAAPEIPQALIDQL-KPGG 168 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~~~~D---~V~~~~~~~~~~~~~~~~L-k~gG 168 (215)
.+++++.+|+...... .+| .|+++.+.+-..+.+.+++ .+++
T Consensus 75 ~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 75 ERLEVIEGDALKVDLP--DFPKQLKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred CcEEEEECchhcCChh--HcCCcceEEEcCChhhHHHHHHHHhccCCC
Confidence 5889999998775442 466 8888888765555566666 4443
No 163
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.11 E-value=4.8e-11 Score=98.60 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=85.5
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----------
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---------- 139 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---------- 139 (215)
..|||+-||.|.+++.+++.. .+|+|+|.++.+++.|++++..++. .+++++.+++.+...
T Consensus 198 ~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i------~n~~f~~~~~~~~~~~~~~~r~~~~ 268 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGI------DNVEFIRGDAEDFAKALAKAREFNR 268 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--------SEEEEE--SHHCCCHHCCS-GGTT
T ss_pred CcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCC------CcceEEEeeccchhHHHHhhHHHHh
Confidence 389999999999999999876 7999999999999999999998876 689999876543211
Q ss_pred ------CCCCccEEEEccCCCCchHHHHHhc-CCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccCcccc
Q 028016 140 ------EFAPYDAIHVGAAAPEIPQALIDQL-KPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQL 212 (215)
Q Consensus 140 ------~~~~~D~V~~~~~~~~~~~~~~~~L-k~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 212 (215)
....+|+|+.+++-..+.+.+.+.+ ++. .++...++.....+.+..... .|.......+.+.|.|++.+.+
T Consensus 269 ~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~-~ivYvSCnP~tlaRDl~~L~~-~y~~~~v~~~DmFP~T~HvE~v 346 (352)
T PF05958_consen 269 LKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLK-RIVYVSCNPATLARDLKILKE-GYKLEKVQPVDMFPQTHHVETV 346 (352)
T ss_dssp GGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSS-EEEEEES-HHHHHHHHHHHHC-CEEEEEEEEE-SSTTSS--EEE
T ss_pred hhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCC-eEEEEECCHHHHHHHHHHHhh-cCEEEEEEEeecCCCCCcEEEE
Confidence 1136899999998766555444333 343 555544443322222222223 5888999999999999998876
Q ss_pred C
Q 028016 213 R 213 (215)
Q Consensus 213 ~ 213 (215)
.
T Consensus 347 ~ 347 (352)
T PF05958_consen 347 A 347 (352)
T ss_dssp E
T ss_pred E
Confidence 4
No 164
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.10 E-value=9.8e-10 Score=84.96 Aligned_cols=101 Identities=23% Similarity=0.280 Sum_probs=85.7
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCCCCccE
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEFAPYDA 146 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~~D~ 146 (215)
..+||||||.|.....+|+. .|+..++|+|+....+..|.+.+...++ .|+.+++.|+.. ...+.++.|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~~~~sl~~ 122 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLIPDGSLDK 122 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcCCCCCeeE
Confidence 58999999999999999999 5889999999999999999999988764 499999999875 3345469999
Q ss_pred EEEccCCCC--------------chHHHHHhcCCCcEEEEEeCCC
Q 028016 147 IHVGAAAPE--------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 147 V~~~~~~~~--------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+...+.++ +++.+.+.|+|||.|.+.+.+.
T Consensus 123 I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 123 IYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 988887533 4467899999999999988763
No 165
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.10 E-value=5e-09 Score=77.91 Aligned_cols=135 Identities=19% Similarity=0.213 Sum_probs=97.6
Q ss_pred CcCCCccccC--CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH
Q 028016 36 YVDSPMAIGY--NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 36 y~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~ 113 (215)
|..+.++... +..++.-.+...+...+...--.+.++||+.+|+|.++..++++ |. .+++.+|.+...+...++|+
T Consensus 9 ~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA-~~~~~vE~~~~a~~~l~~N~ 86 (187)
T COG0742 9 YKGRKLKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSR-GA-ARVVFVEKDRKAVKILKENL 86 (187)
T ss_pred ccCCcccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC-CC-ceEEEEecCHHHHHHHHHHH
Confidence 3444444443 34455555566666666521245799999999999999999998 44 78999999999999999999
Q ss_pred HhhcccCcccCCCeEEEeCCCCCCC---CCCCCccEEEEccCCCC-chH----H----HHHhcCCCcEEEEEeCCC
Q 028016 114 EKSAAAPLLKEGSLSVHVGDGRKGW---PEFAPYDAIHVGAAAPE-IPQ----A----LIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~V~~~~~~~~-~~~----~----~~~~Lk~gG~lv~~~~~~ 177 (215)
...+.. .+..+...|+...+ ...++||+|+.+++++. +.+ . -..+|+|+|.+++.....
T Consensus 87 ~~l~~~-----~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 87 KALGLE-----GEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHhCCc-----cceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 887654 57788888877432 22235999999999973 331 1 135699999999977643
No 166
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.7e-10 Score=80.23 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=82.7
Q ss_pred ccCCcccchhHHHHHHHHHHHhcC--CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccC
Q 028016 43 IGYNATISAPHMHATCLQLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120 (215)
Q Consensus 43 ~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 120 (215)
....+.++.|++.+.|+..+..-. -.|+.++|+|||.|.++...+-. ++ ..++|+|+++.+++.+.+|..+..+
T Consensus 21 ~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~-~~-e~vlGfDIdpeALEIf~rNaeEfEv-- 96 (185)
T KOG3420|consen 21 LLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP-KN-ESVLGFDIDPEALEIFTRNAEEFEV-- 96 (185)
T ss_pred hhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC-CC-ceEEeeecCHHHHHHHhhchHHhhh--
Confidence 344677888998999988886322 24789999999999999555433 44 7899999999999999999988653
Q ss_pred cccCCCeEEEeCCCCCCCCCCCCccEEEEccCC
Q 028016 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 121 ~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
++++.+++..+..+..+.||.++.++++
T Consensus 97 -----qidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 97 -----QIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred -----hhheeeeeccchhccCCeEeeEEecCCC
Confidence 6699999998877776899999999887
No 167
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.09 E-value=9.2e-10 Score=83.55 Aligned_cols=100 Identities=27% Similarity=0.341 Sum_probs=75.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
...++..|+|..||.|.+++.+++. +....|+++|++|.+++..++++..+++. ..+.+..+|...... .+.|
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~-----~~i~~~~~D~~~~~~-~~~~ 170 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVE-----NRIEVINGDAREFLP-EGKF 170 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-T-----TTEEEEES-GGG----TT-E
T ss_pred cCCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCC-----CeEEEEcCCHHHhcC-cccc
Confidence 4678999999999999999999985 33378999999999999999999998875 678999999988766 4899
Q ss_pred cEEEEccCC--CCchHHHHHhcCCCcEEE
Q 028016 145 DAIHVGAAA--PEIPQALIDQLKPGGRMV 171 (215)
Q Consensus 145 D~V~~~~~~--~~~~~~~~~~Lk~gG~lv 171 (215)
|.|+++.+. .++++.+..++++||++-
T Consensus 171 drvim~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 171 DRVIMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred CEEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence 999998864 357789999999999874
No 168
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.07 E-value=2.1e-09 Score=81.61 Aligned_cols=112 Identities=22% Similarity=0.318 Sum_probs=91.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+.. .....+.||+|.=||+.++.+|..+.++++|+++|+++...+.+.+..+..++. ++++++++++
T Consensus 61 ~g~fl~~li~-~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-----~KI~~i~g~a 134 (237)
T KOG1663|consen 61 KGQFLQMLIR-LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-----HKITFIEGPA 134 (237)
T ss_pred HHHHHHHHHH-HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-----ceeeeeecch
Confidence 4444555432 445689999999999999999999988899999999999999998888877776 7999999988
Q ss_pred CCCCC------CCCCccEEEEccCCCC---chHHHHHhcCCCcEEEE
Q 028016 135 RKGWP------EFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 135 ~~~~~------~~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~ 172 (215)
.+.+. ..++||.+|.+..-.. ..+++.+++|+||+|++
T Consensus 135 ~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEE
Confidence 76332 3478999999987654 44788999999999998
No 169
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.07 E-value=2.4e-09 Score=89.28 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+.. ..++.+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|+..++. .++.+..+|+
T Consensus 45 ~~~v~~~~~~-~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~Da 116 (382)
T PRK04338 45 SVLVLRAFGP-KLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKDA 116 (382)
T ss_pred HHHHHHHHHh-hcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhhH
Confidence 3444444431 11346899999999999999988754 35899999999999999999988765 4567888887
Q ss_pred CCCCCCCCCccEEEEccCCC--CchHHHHHhcCCCcEEEEEeCC
Q 028016 135 RKGWPEFAPYDAIHVGAAAP--EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~--~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.........||+|++++.-. .+++.+...+++||.++++.-+
T Consensus 117 ~~~l~~~~~fD~V~lDP~Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 117 NALLHEERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred HHHHhhcCCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 65433135799999987422 3446667889999999998443
No 170
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=3.2e-09 Score=77.68 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=81.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
...++|||||+|..+..+++..++...+.++|+++.+++..++.+.-++ ..+++++.|....... ++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-------~~~~~V~tdl~~~l~~-~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-------VHIDVVRTDLLSGLRN-ESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-------CccceeehhHHhhhcc-CCccEEE
Confidence 5689999999999999999998888899999999999999888887765 3688999998887766 8999999
Q ss_pred EccCCC---------------------------CchHHHHHhcCCCcEEEEEeC
Q 028016 149 VGAAAP---------------------------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 149 ~~~~~~---------------------------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
.+++.. .+++.+-..|.|.|++++..-
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 888651 122335567899999998653
No 171
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.06 E-value=5.2e-10 Score=89.24 Aligned_cols=105 Identities=19% Similarity=0.162 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC---CCCC
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~ 143 (215)
..+.+|||+.|=||++++.++.. |. .+|+++|.|..+++.+++++.-++. ...+++++..|+.+.+. ..++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA-~~v~~VD~S~~al~~a~~N~~lNg~----~~~~~~~~~~Dvf~~l~~~~~~~~ 195 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GA-KEVVSVDSSKRALEWAKENAALNGL----DLDRHRFIQGDVFKFLKRLKKGGR 195 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TE-SEEEEEES-HHHHHHHHHHHHHTT-----CCTCEEEEES-HHHHHHHHHHTT-
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHcCC----CccceEEEecCHHHHHHHHhcCCC
Confidence 35789999999999999988764 43 6899999999999999999988774 33688999999876432 2368
Q ss_pred ccEEEEccCC------------CCchHHHHHhcCCCcEEEEEeCCC
Q 028016 144 YDAIHVGAAA------------PEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 144 ~D~V~~~~~~------------~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
||+|+++++. ..+...+.++|+|||.|++++++.
T Consensus 196 fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 196 FDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 9999999874 224456789999999999877664
No 172
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.06 E-value=1e-09 Score=84.73 Aligned_cols=116 Identities=29% Similarity=0.403 Sum_probs=81.2
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc------Cccc
Q 028016 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA------PLLK 123 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------~~~~ 123 (215)
..|.+ ...++.+. ..++.+||+.|||.|.....++.+ | .+|+|+|+|+.+++.+.+........ ....
T Consensus 22 ~~p~L-~~~~~~l~--~~~~~rvLvPgCG~g~D~~~La~~-G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 95 (218)
T PF05724_consen 22 PNPAL-VEYLDSLA--LKPGGRVLVPGCGKGYDMLWLAEQ-G--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQ 95 (218)
T ss_dssp STHHH-HHHHHHHT--TSTSEEEEETTTTTSCHHHHHHHT-T--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEET
T ss_pred CCHHH-HHHHHhcC--CCCCCeEEEeCCCChHHHHHHHHC-C--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeec
Confidence 34443 33344444 677789999999999999999998 4 79999999999999885432211000 0123
Q ss_pred CCCeEEEeCCCCCCCCCC-CCccEEEEccCCCCch--------HHHHHhcCCCcEEE
Q 028016 124 EGSLSVHVGDGRKGWPEF-APYDAIHVGAAAPEIP--------QALIDQLKPGGRMV 171 (215)
Q Consensus 124 ~~~v~~~~~d~~~~~~~~-~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv 171 (215)
..++++.++|+....+.. ++||+|+....+..++ +.+.++|+|||.++
T Consensus 96 ~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 96 AGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp TSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred CCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 357899999998754432 5799999998886655 46889999999943
No 173
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=5e-09 Score=86.65 Aligned_cols=107 Identities=26% Similarity=0.367 Sum_probs=85.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC---CCC
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~ 140 (215)
...+|.+|||++++.|+=|..++..+... ..|+++|.++..++..+++++..+. .++.+...|.... ...
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------RNVIVVNKDARRLAELLPG 226 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------CceEEEecccccccccccc
Confidence 47889999999999999999999997543 4569999999999999999999776 5777888776532 233
Q ss_pred CCCccEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028016 141 FAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 141 ~~~~D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.++||.|+++.++. .+++.+.++|||||.|++++++.
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 23699999998762 12245788999999999998874
No 174
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.03 E-value=2e-09 Score=81.24 Aligned_cols=116 Identities=22% Similarity=0.164 Sum_probs=78.1
Q ss_pred HHHHHHHhcCCCCCE-EEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 57 TCLQLLEENLKPGMH-ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~-vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
-+++.|...+.+..+ |||||||||..+.++++.+ |.....-.|.++.........+...+..+....-.+++...+..
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWP 91 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCc
Confidence 344444444555554 9999999999999999997 66788999999998877777776655532221112222221111
Q ss_pred CCC---CCCCCccEEEEccCCC--------CchHHHHHhcCCCcEEEEE
Q 028016 136 KGW---PEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 136 ~~~---~~~~~~D~V~~~~~~~--------~~~~~~~~~Lk~gG~lv~~ 173 (215)
... ...++||.|++...+| .++..+.++|++||.|++-
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred cccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 110 0236899999998774 3456788999999999984
No 175
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=99.03 E-value=4.5e-09 Score=81.65 Aligned_cols=100 Identities=24% Similarity=0.284 Sum_probs=81.4
Q ss_pred cccCCcccc-hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccC
Q 028016 42 AIGYNATIS-APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120 (215)
Q Consensus 42 ~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 120 (215)
..+.|+|+. .|.+...+++.-. +++.+.|||+|.|||.++..+.... .+|+++|+++.++....++.+....+
T Consensus 33 nkd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~- 106 (315)
T KOG0820|consen 33 NKDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKS- 106 (315)
T ss_pred ccccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCcc-
Confidence 345678765 5666777777765 8999999999999999999999985 89999999999999999988765543
Q ss_pred cccCCCeEEEeCCCCCCCCCCCCccEEEEccCC
Q 028016 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 121 ~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
..+.++.+|...... ..||.++++.+.
T Consensus 107 ----~kLqV~~gD~lK~d~--P~fd~cVsNlPy 133 (315)
T KOG0820|consen 107 ----GKLQVLHGDFLKTDL--PRFDGCVSNLPY 133 (315)
T ss_pred ----ceeeEEecccccCCC--cccceeeccCCc
Confidence 688999999877543 358999987654
No 176
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=1.3e-09 Score=83.22 Aligned_cols=112 Identities=25% Similarity=0.339 Sum_probs=75.5
Q ss_pred HHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc-Ccc---------------
Q 028016 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA-PLL--------------- 122 (215)
Q Consensus 59 l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~--------------- 122 (215)
+..|....-.+..+|||||-+|.++..+++.+++ ..+.|+|+++..++.|++.++..... ..+
T Consensus 49 Lk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~i 127 (288)
T KOG2899|consen 49 LKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPI 127 (288)
T ss_pred hhhccccccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccc
Confidence 3333333455678999999999999999999987 67999999999999999987532110 000
Q ss_pred --------------------cCCCeEEEeCCCCCCCCCCCCccEEEEccCC------------CCchHHHHHhcCCCcEE
Q 028016 123 --------------------KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA------------PEIPQALIDQLKPGGRM 170 (215)
Q Consensus 123 --------------------~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~------------~~~~~~~~~~Lk~gG~l 170 (215)
...|..+...|+. +.....||+|+|-... ..++..+.++|.|||+|
T Consensus 128 s~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiL 205 (288)
T KOG2899|consen 128 SQRNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGIL 205 (288)
T ss_pred cccccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEE
Confidence 0011111111121 1223579999887643 23456789999999999
Q ss_pred EEE
Q 028016 171 VIP 173 (215)
Q Consensus 171 v~~ 173 (215)
++.
T Consensus 206 vvE 208 (288)
T KOG2899|consen 206 VVE 208 (288)
T ss_pred EEc
Confidence 994
No 177
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.02 E-value=3.1e-09 Score=86.21 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=62.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh-cccCcccCCCeEEEeC-CCCC---CC-CCC
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHVG-DGRK---GW-PEF 141 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~v~~~~~-d~~~---~~-~~~ 141 (215)
++.++||||||+|.+...++... +..+++++|+++.+++.|++++..+ ++. .++.+... +... .. ...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~-----~~I~~~~~~~~~~i~~~i~~~~ 187 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLN-----GAIRLRLQKDSKAIFKGIIHKN 187 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCc-----CcEEEEEccchhhhhhcccccC
Confidence 45799999999998888887764 4479999999999999999999987 454 46777542 2222 11 123
Q ss_pred CCccEEEEccCCCC
Q 028016 142 APYDAIHVGAAAPE 155 (215)
Q Consensus 142 ~~~D~V~~~~~~~~ 155 (215)
+.||+|+|++++..
T Consensus 188 ~~fDlivcNPPf~~ 201 (321)
T PRK11727 188 ERFDATLCNPPFHA 201 (321)
T ss_pred CceEEEEeCCCCcC
Confidence 68999999999854
No 178
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.01 E-value=5.8e-10 Score=85.13 Aligned_cols=95 Identities=12% Similarity=0.081 Sum_probs=66.5
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEE
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 149 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~ 149 (215)
..++|+|||+|..+..++... .+|+++|+|+.|++.+++........ ....+...+.......+++.|+|++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~-----t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCH-----TPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCccccc-----CCccccccccccccCCCcceeeehh
Confidence 389999999998888888886 79999999999999987643221110 1222222223333334589999999
Q ss_pred ccCCCC-----chHHHHHhcCCCcEEEE
Q 028016 150 GAAAPE-----IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 150 ~~~~~~-----~~~~~~~~Lk~gG~lv~ 172 (215)
...+|+ +.+.+.++||+.|-++.
T Consensus 107 Aqa~HWFdle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 107 AQAVHWFDLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred hhhHHhhchHHHHHHHHHHcCCCCCEEE
Confidence 887764 45778999998885544
No 179
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.01 E-value=4.1e-09 Score=76.14 Aligned_cols=112 Identities=19% Similarity=0.249 Sum_probs=86.7
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE
Q 028016 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 129 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~ 129 (215)
+++...+.|...+. ...+..|||+|.|||.++..+.++.-....++++|.|++......+.+ +.+.+
T Consensus 32 sSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----------p~~~i 98 (194)
T COG3963 32 SSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----------PGVNI 98 (194)
T ss_pred CcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----------CCccc
Confidence 44445667777766 777889999999999999999988645589999999999988877654 45668
Q ss_pred EeCCCCCCC-----CCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028016 130 HVGDGRKGW-----PEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 130 ~~~d~~~~~-----~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
+.+|+.... .....||.|++.-++..+ ++.+...|.+||.++.-.
T Consensus 99 i~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 99 INGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 888876532 123579999999887543 467888999999988643
No 180
>PLN02823 spermine synthase
Probab=99.00 E-value=3.5e-09 Score=86.67 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccE
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~ 146 (215)
...+||.+|+|.|..+..+++.. +..+++++|+++.+++.|++.+..... .+..++++++.+|+..... ..++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~--~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE--AFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc--cccCCceEEEEChhHHHHhhCCCCccE
Confidence 34789999999999999888863 347899999999999999998754321 1334799999999876543 2368999
Q ss_pred EEEccCCC------------CchH-HHHHhcCCCcEEEEEe
Q 028016 147 IHVGAAAP------------EIPQ-ALIDQLKPGGRMVIPV 174 (215)
Q Consensus 147 V~~~~~~~------------~~~~-~~~~~Lk~gG~lv~~~ 174 (215)
|+++..-+ ++.+ .+.+.|+|||++++..
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 99884321 2345 6788999999998754
No 181
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.99 E-value=1.2e-09 Score=87.79 Aligned_cols=100 Identities=21% Similarity=0.135 Sum_probs=77.6
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
++-.+..|||+|||+|.++...|+. |. .+|+++|.|.-+ +.|.+.+..++.. +.++++++.+.+...+.++.
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akA-GA-~~V~aVe~S~ia-~~a~~iv~~N~~~-----~ii~vi~gkvEdi~LP~eKV 128 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKA-GA-RKVYAVEASSIA-DFARKIVKDNGLE-----DVITVIKGKVEDIELPVEKV 128 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHh-Cc-ceEEEEechHHH-HHHHHHHHhcCcc-----ceEEEeecceEEEecCccce
Confidence 3556889999999999999999998 54 799999987665 9999999998876 57899999887754345899
Q ss_pred cEEEEccCCCC-----chH----HHHHhcCCCcEEEE
Q 028016 145 DAIHVGAAAPE-----IPQ----ALIDQLKPGGRMVI 172 (215)
Q Consensus 145 D~V~~~~~~~~-----~~~----~~~~~Lk~gG~lv~ 172 (215)
|+|++--.-.. +++ +=-+.|+|||.++=
T Consensus 129 DiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 129 DIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred eEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 99987643222 222 23478999998753
No 182
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.99 E-value=4.7e-09 Score=78.35 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=69.0
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CC
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~ 140 (215)
...++.+|||+|||+|..++.+++..+ ..+|+..|.++ .++.++.++..+.. ....++.+..-++.+.. ..
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~ 116 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLE 116 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS
T ss_pred hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccc
Confidence 356678999999999999999998842 37999999999 99999999887652 11257788887775532 13
Q ss_pred CCCccEEEEccCCC------CchHHHHHhcCCCcEEEEEeC
Q 028016 141 FAPYDAIHVGAAAP------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 141 ~~~~D~V~~~~~~~------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
..+||+|++...+. .+.+-+.++|+++|.+++...
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 36899999887653 344667889999999777654
No 183
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.95 E-value=1.1e-08 Score=81.61 Aligned_cols=104 Identities=21% Similarity=0.289 Sum_probs=84.6
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC-CCccEEE
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF-APYDAIH 148 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~D~V~ 148 (215)
.+||-||-|.|..+..+++.. +-.+++.+|+++..++.+++.+....... ..++++++.+|..+..... .+||+|+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~--~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGA--DDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCccccc--CCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 599999999999999999985 45899999999999999999987654221 1479999999988765432 4799999
Q ss_pred EccCCC----------CchHHHHHhcCCCcEEEEEeCC
Q 028016 149 VGAAAP----------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 149 ~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
++..-+ .+.+.+.+.|+++|+++..+.+
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 887543 3447899999999999998444
No 184
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=1.5e-08 Score=79.43 Aligned_cols=96 Identities=18% Similarity=0.134 Sum_probs=77.9
Q ss_pred Ccc-cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028016 46 NAT-ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 46 ~~~-~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
|++ +..+.+...+++... +.++..|||||+|.|.+|..+++.. .+|+++|+|+.+++..++.+.. .
T Consensus 9 GQnFL~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~--------~ 75 (259)
T COG0030 9 GQNFLIDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAP--------Y 75 (259)
T ss_pred ccccccCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhccc--------c
Confidence 443 456667788888876 7778999999999999999999985 6899999999999999887652 2
Q ss_pred CCeEEEeCCCCCCCCCCC-CccEEEEccCCC
Q 028016 125 GSLSVHVGDGRKGWPEFA-PYDAIHVGAAAP 154 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~~-~~D~V~~~~~~~ 154 (215)
.+++++.+|+.......- .++.|+++-+..
T Consensus 76 ~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 76 DNLTVINGDALKFDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred cceEEEeCchhcCcchhhcCCCEEEEcCCCc
Confidence 699999999987655411 688999888763
No 185
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.91 E-value=9e-09 Score=82.27 Aligned_cols=100 Identities=23% Similarity=0.268 Sum_probs=79.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
.+..|||+|||+|.++...+.. |. .+|+++|. .+|.+.|++.+..+.+. +++.++.+.+++...+ ++.|+|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA-~~vYAvEA-S~MAqyA~~Lv~~N~~~-----~rItVI~GKiEdieLP-Ek~Dvi 247 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GA-KKVYAVEA-SEMAQYARKLVASNNLA-----DRITVIPGKIEDIELP-EKVDVI 247 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-Cc-ceEEEEeh-hHHHHHHHHHHhcCCcc-----ceEEEccCccccccCc-hhccEE
Confidence 4678999999999999999887 55 78999996 56889999988887655 7999999999886655 789999
Q ss_pred EEccCCC-----CchH---HHHHhcCCCcEEEEEeCC
Q 028016 148 HVGAAAP-----EIPQ---ALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 148 ~~~~~~~-----~~~~---~~~~~Lk~gG~lv~~~~~ 176 (215)
++-+.-. .+++ -+++.|+|.|.++=++++
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gd 284 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGD 284 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccc
Confidence 9876532 2222 256899999998765544
No 186
>PRK00536 speE spermidine synthase; Provisional
Probab=98.89 E-value=1.9e-08 Score=79.36 Aligned_cols=115 Identities=12% Similarity=-0.016 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028016 54 MHATCLQLLEEN-LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 54 ~~~~~l~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
+..+++....-. -+...+||-+|.|.|..+..+++. . .+|+.+|+++.+++.+++.+....- .+..++++++..
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~~ 131 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQ 131 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEeeh
Confidence 455555543211 133489999999999999999987 2 5999999999999999997766432 255678888762
Q ss_pred CCCCCCCCCCCccEEEEccCC-CCchHHHHHhcCCCcEEEEEeCC
Q 028016 133 DGRKGWPEFAPYDAIHVGAAA-PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 133 d~~~~~~~~~~~D~V~~~~~~-~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
..+ . ..++||+|+++... .++.+.+.+.|+|||.++.-..+
T Consensus 132 -~~~-~-~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 132 -LLD-L-DIKKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred -hhh-c-cCCcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCCC
Confidence 111 1 12689999999544 45678899999999999995544
No 187
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.88 E-value=5.6e-09 Score=83.77 Aligned_cols=89 Identities=18% Similarity=0.296 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028016 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
+..++++.+. +.++..++|++||.|+.+..+++.+++.++|+|+|.++.+++.+++++.. . .++.+++++
T Consensus 7 ll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~------~ri~~i~~~ 76 (296)
T PRK00050 7 LLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F------GRFTLVHGN 76 (296)
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C------CcEEEEeCC
Confidence 5788888887 77888999999999999999999976568999999999999999988754 1 589999999
Q ss_pred CCCCC---CC-CCCccEEEEccC
Q 028016 134 GRKGW---PE-FAPYDAIHVGAA 152 (215)
Q Consensus 134 ~~~~~---~~-~~~~D~V~~~~~ 152 (215)
..+.. .. ..++|.|+++..
T Consensus 77 f~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 77 FSNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred HHHHHHHHHcCCCccCEEEECCC
Confidence 87532 11 127999987763
No 188
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.87 E-value=9.5e-09 Score=82.52 Aligned_cols=105 Identities=26% Similarity=0.337 Sum_probs=85.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 143 (215)
..++..|||++++.|+-+..++..++..+.+++.|+++..+...+++++..+. .++.+...|..... .....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHHHHTTT
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeeccccccccccccc
Confidence 78899999999999999999999987679999999999999999999988765 58888877765541 12246
Q ss_pred ccEEEEccCCCC----------------------------chHHHHHhc----CCCcEEEEEeCC
Q 028016 144 YDAIHVGAAAPE----------------------------IPQALIDQL----KPGGRMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~~~----------------------------~~~~~~~~L----k~gG~lv~~~~~ 176 (215)
||.|+++.++.. +++.+.+.+ ||||++++++++
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 999999987621 224577899 999999999875
No 189
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.87 E-value=6.5e-09 Score=79.48 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=69.5
Q ss_pred EEEEEcCCccHHHHHHHHHhCCC--CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC----CCCCCCCc
Q 028016 71 HALDIGSGTGYLTACFALMVGPQ--GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----GWPEFAPY 144 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~ 144 (215)
+|||+|||.|.....+.+. .++ -+++++|.|+.+++..+++..... .+......|+.. ..+..+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~-~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-------~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKT-SPNNRLKVYACDFSPRAIELVKKSSGYDE-------SRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred hheeeccCCCcccchhhhc-CCCCCeEEEEcCCChHHHHHHHhccccch-------hhhcccceeccchhccCCCCcCcc
Confidence 7999999999999999887 354 789999999999999887643221 233333334332 22334789
Q ss_pred cEEEEccCCCC--------chHHHHHhcCCCcEEEEE
Q 028016 145 DAIHVGAAAPE--------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~ 173 (215)
|.|.+...+.+ .++++.++|||||.|++-
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 99877665543 446899999999999984
No 190
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.86 E-value=2.2e-08 Score=77.63 Aligned_cols=98 Identities=20% Similarity=0.304 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.++.++||+|||||.++..+++. |. .+|+++|.++.++... +........+...|+. ..+..+.+++...+|+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga-~~v~avD~~~~~l~~~---l~~~~~v~~~~~~ni~--~~~~~~~~~d~~~~Dv 146 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GA-KEVYGVDVGYNQLAEK---LRQDERVKVLERTNIR--YVTPADIFPDFATFDV 146 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHH---HhcCCCeeEeecCCcc--cCCHhHcCCCceeeeE
Confidence 46789999999999999999987 44 7899999999877651 2211100001112222 1111122222246777
Q ss_pred EEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028016 147 IHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 147 V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
++++... ++..+.+.|++ |.+++.+
T Consensus 147 sfiS~~~--~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 147 SFISLIS--ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred EEeehHh--HHHHHHHHhCc-CeEEEEc
Confidence 7666544 67889999999 8887755
No 191
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=2.6e-08 Score=81.02 Aligned_cols=102 Identities=25% Similarity=0.295 Sum_probs=88.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+|.+|+|..||.|.+++.+|+.. . .+|+++|+++.+++..++++.-+++. ..+..+.+|.....+..+.+|
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g-~-~~V~A~diNP~A~~~L~eNi~LN~v~-----~~v~~i~gD~rev~~~~~~aD 258 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKG-R-PKVYAIDINPDAVEYLKENIRLNKVE-----GRVEPILGDAREVAPELGVAD 258 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcC-C-ceEEEEecCHHHHHHHHHHHHhcCcc-----ceeeEEeccHHHhhhccccCC
Confidence 5669999999999999999999984 3 33999999999999999999998875 458999999988766557899
Q ss_pred EEEEccCC--CCchHHHHHhcCCCcEEEEEe
Q 028016 146 AIHVGAAA--PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~--~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
.|+.+.+. +++...+.+.+++||.+-+-.
T Consensus 259 rIim~~p~~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 259 RIIMGLPKSAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred EEEeCCCCcchhhHHHHHHHhhcCcEEEEEe
Confidence 99998875 678889999999999988743
No 192
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.85 E-value=4.1e-09 Score=77.09 Aligned_cols=75 Identities=21% Similarity=0.226 Sum_probs=56.5
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC--C-CccEE
Q 028016 71 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--A-PYDAI 147 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~-~~D~V 147 (215)
.|+|+.||.|+.++.+|+.+ .+|+++|+++..++.++.|++..++. ++++++++|+.+..... . .+|+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~-----~~I~~i~gD~~~~~~~~~~~~~~D~v 73 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVA-----DNIDFICGDFFELLKRLKSNKIFDVV 73 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-G-----GGEEEEES-HHHHGGGB------SEE
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEeCCHHHHHhhccccccccEE
Confidence 69999999999999999986 78999999999999999999998865 79999999987643321 1 28999
Q ss_pred EEccCC
Q 028016 148 HVGAAA 153 (215)
Q Consensus 148 ~~~~~~ 153 (215)
+++++.
T Consensus 74 FlSPPW 79 (163)
T PF09445_consen 74 FLSPPW 79 (163)
T ss_dssp EE---B
T ss_pred EECCCC
Confidence 998864
No 193
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.85 E-value=4.2e-08 Score=76.29 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=67.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
...++||||+|.|..+..++..+ .+|++.|.|+.|....++ . ..++...+--. ....+||+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~----k---------g~~vl~~~~w~--~~~~~fDvI 155 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK----K---------GFTVLDIDDWQ--QTDFKFDVI 155 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh----C---------CCeEEehhhhh--ccCCceEEE
Confidence 35689999999999999999987 789999999998655443 2 33343332211 122589999
Q ss_pred EEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028016 148 HVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 148 ~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
.|-..++. +++.+++.|+|+|++++.+
T Consensus 156 scLNvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 156 SCLNVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred eehhhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 99887743 5578999999999999864
No 194
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.83 E-value=3.8e-08 Score=77.32 Aligned_cols=91 Identities=23% Similarity=0.339 Sum_probs=73.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+..+|+|+|+|+|.++..+++.. |+.+++.+|. +..++.+++ . ++++++.+|+.+..+ . +|
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~---------~rv~~~~gd~f~~~P--~-~D 160 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---A---------DRVEFVPGDFFDPLP--V-AD 160 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---T---------TTEEEEES-TTTCCS--S-ES
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---c---------cccccccccHHhhhc--c-cc
Confidence 4556799999999999999999995 7789999998 778888776 1 799999999985444 3 99
Q ss_pred EEEEccCCCCch--------HHHHHhcCCC--cEEEEE
Q 028016 146 AIHVGAAAPEIP--------QALIDQLKPG--GRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~--------~~~~~~Lk~g--G~lv~~ 173 (215)
+++....++... +++.+.|+|| |+|++.
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 999998887644 5788999999 999984
No 195
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.82 E-value=5.6e-09 Score=79.44 Aligned_cols=107 Identities=27% Similarity=0.281 Sum_probs=82.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCCC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 143 (215)
++.+.+|||.+.|-|+.++..+++ |. ..|+.+|.++..++.|+-| .++.......++++.+|+.+... ++++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r-GA-~~VitvEkdp~VLeLa~lN----PwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER-GA-IHVITVEKDPNVLELAKLN----PWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc-CC-cEEEEEeeCCCeEEeeccC----CCCccccccccEEecccHHHHHhcCCccc
Confidence 456899999999999999999988 43 4899999999999988642 22322333478999999876433 3478
Q ss_pred ccEEEEccCC---------CCchHHHHHhcCCCcEEEEEeCCCc
Q 028016 144 YDAIHVGAAA---------PEIPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 144 ~D~V~~~~~~---------~~~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
||+|+-+++- ..+.+++.++|||||.|+--+++.-
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 9999988763 2355789999999999998776643
No 196
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.81 E-value=2.3e-08 Score=81.52 Aligned_cols=125 Identities=21% Similarity=0.211 Sum_probs=81.1
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHh------CCCCeEEEEecChHHHHHHHHHHHhhccc
Q 028016 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMV------GPQGRAVGVEHIPELVVSSIQNIEKSAAA 119 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~------~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 119 (215)
|++.+...+...|.+.+. ..++.+|+|.+||+|.+...+.+.+ ....+++|+|+++.++..|+-++.-.+..
T Consensus 26 G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp GGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred ceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 445455555666666664 6777899999999999998887743 13478999999999999998777544432
Q ss_pred CcccCCCeEEEeCCCCCCCCC--CCCccEEEEccCCCCc---------------------------hHHHHHhcCCCcEE
Q 028016 120 PLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAPEI---------------------------PQALIDQLKPGGRM 170 (215)
Q Consensus 120 ~~~~~~~v~~~~~d~~~~~~~--~~~~D~V~~~~~~~~~---------------------------~~~~~~~Lk~gG~l 170 (215)
.....+..+|....... ...||+|++++++-.. +..+.+.|++||++
T Consensus 104 ----~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 104 ----NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp ----CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred ----cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence 23456788886543332 3689999999876322 24577899999998
Q ss_pred EEEeCC
Q 028016 171 VIPVGN 176 (215)
Q Consensus 171 v~~~~~ 176 (215)
.+.+|+
T Consensus 180 ~~Ilp~ 185 (311)
T PF02384_consen 180 AIILPN 185 (311)
T ss_dssp EEEEEH
T ss_pred eEEecc
Confidence 876654
No 197
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.79 E-value=1.6e-08 Score=85.83 Aligned_cols=97 Identities=26% Similarity=0.268 Sum_probs=69.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 69 GMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+..|+|+|||+|.++...++.. +...+|+++|.++.+....++.++.++.. ++|+++.+|..+...+ .++|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-----~~V~vi~~d~r~v~lp-ekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-----DKVTVIHGDMREVELP-EKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-----TTEEEEES-TTTSCHS-S-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-----CeEEEEeCcccCCCCC-Ccee
Confidence 4689999999999988776552 23379999999999888877776666654 7899999999886655 6999
Q ss_pred EEEEcc----CCCCc----hHHHHHhcCCCcEEE
Q 028016 146 AIHVGA----AAPEI----PQALIDQLKPGGRMV 171 (215)
Q Consensus 146 ~V~~~~----~~~~~----~~~~~~~Lk~gG~lv 171 (215)
+|++-. ...++ +....+.|||+|.++
T Consensus 261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 997543 23333 345568899998764
No 198
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.78 E-value=1.4e-07 Score=82.34 Aligned_cols=103 Identities=12% Similarity=0.057 Sum_probs=71.8
Q ss_pred CCcccchhHHHHHHHHHHHhcCC-----CCCEEEEEcCCccHHHHHHHHHhCC-------CCeEEEEecChHHHHHHHHH
Q 028016 45 YNATISAPHMHATCLQLLEENLK-----PGMHALDIGSGTGYLTACFALMVGP-------QGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 45 ~~~~~~~~~~~~~~l~~l~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~~-------~~~v~~~D~s~~~~~~a~~~ 112 (215)
.|++.+.+.+...|++.+..... ...+|||.|||+|.+...++..+.. ...++|+|+++.++..++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 36677777788888887642222 3468999999999999988876521 25789999999999999998
Q ss_pred HHhhcccCcccCCCeEEEeCCCCCC---C--CCCCCccEEEEccCC
Q 028016 113 IEKSAAAPLLKEGSLSVHVGDGRKG---W--PEFAPYDAIHVGAAA 153 (215)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~d~~~~---~--~~~~~~D~V~~~~~~ 153 (215)
+...+. ..+.+...|.... . ...+.||+|+++++.
T Consensus 83 l~~~~~------~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 83 LGEFAL------LEINVINFNSLSYVLLNIESYLDLFDIVITNPPY 122 (524)
T ss_pred HhhcCC------CCceeeecccccccccccccccCcccEEEeCCCc
Confidence 876431 1344454443321 1 112579999999875
No 199
>PRK04148 hypothetical protein; Provisional
Probab=98.77 E-value=1e-07 Score=67.39 Aligned_cols=91 Identities=12% Similarity=0.102 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCCccH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCc
Q 028016 67 KPGMHALDIGSGTGY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~ 144 (215)
.++.+++|+|||+|. .+..+++. | ..|+++|+++..++.++++ .+.++.+|..+.... -..+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~-G--~~ViaIDi~~~aV~~a~~~-------------~~~~v~dDlf~p~~~~y~~a 78 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES-G--FDVIVIDINEKAVEKAKKL-------------GLNAFVDDLFNPNLEIYKNA 78 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHh-------------CCeEEECcCCCCCHHHHhcC
Confidence 345789999999996 77777765 4 7999999999988887653 467889998765443 3679
Q ss_pred cEEEEccCCCCchHHHHHhcCC-CcEEEEE
Q 028016 145 DAIHVGAAAPEIPQALIDQLKP-GGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~-gG~lv~~ 173 (215)
|+|++.-+..++...+.++-+. |.-+++.
T Consensus 79 ~liysirpp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 79 KLIYSIRPPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999998888777766544 4555553
No 200
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=5.1e-08 Score=82.05 Aligned_cols=148 Identities=18% Similarity=0.187 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe
Q 028016 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 131 (215)
Q Consensus 52 ~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~ 131 (215)
+-++..+-+.+. +..+..++|+.||||.+++.+++.. .+|+|+|+++.+++.|+++...++. .|.+|++
T Consensus 369 evLys~i~e~~~--l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngi------sNa~Fi~ 437 (534)
T KOG2187|consen 369 EVLYSTIGEWAG--LPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGI------SNATFIV 437 (534)
T ss_pred HHHHHHHHHHhC--CCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCc------cceeeee
Confidence 334445555554 7778999999999999999999876 7999999999999999999988876 6999999
Q ss_pred CCCCCCCCCC-----CCcc-EEEEccCCCC----chHHHHHhcCCCcEEEEEeCCCc------eeE-EEEEEcCCCceEE
Q 028016 132 GDGRKGWPEF-----APYD-AIHVGAAAPE----IPQALIDQLKPGGRMVIPVGNIF------QDL-KVVDKNQDGSLSI 194 (215)
Q Consensus 132 ~d~~~~~~~~-----~~~D-~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~~~~~------~~~-~~~~~~~~~~~~~ 194 (215)
+.+++..+.. ++=+ +++.+++-.. +++.++++-++.=.++++++-.. ..+ ..-.+...+.|+.
T Consensus 438 gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~~~~~~~~~g~fr~ 517 (534)
T KOG2187|consen 438 GQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCSSPKYRLKKGFFRL 517 (534)
T ss_pred cchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHHhhhhHHHhhcCccccccccccce
Confidence 9766544321 2334 4455654433 23444444456666777664331 111 2223345677888
Q ss_pred EeeceEEEeecccCcc
Q 028016 195 WSETSVRYVPLTSRDA 210 (215)
Q Consensus 195 ~~~~~~~~~p~~~~~~ 210 (215)
.....+...|-|++-+
T Consensus 518 ~~~~~VDlfP~T~h~E 533 (534)
T KOG2187|consen 518 VKAVGVDLFPHTPHCE 533 (534)
T ss_pred eeeeecccCCCCCcCC
Confidence 8888888888887654
No 201
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.76 E-value=2.5e-07 Score=70.48 Aligned_cols=112 Identities=27% Similarity=0.372 Sum_probs=77.6
Q ss_pred HHHHHHHHH-hcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028016 55 HATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 55 ~~~~l~~l~-~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
.+.++.-+. .++.+|.+||-+|+++|.....++.-.++++.|+++|.++......-.-.+. + .|+-.+.+|
T Consensus 59 aAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-R-------~NIiPIl~D 130 (229)
T PF01269_consen 59 AAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-R-------PNIIPILED 130 (229)
T ss_dssp HHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-S-------TTEEEEES-
T ss_pred HHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-C-------Cceeeeecc
Confidence 344433332 3478899999999999999999999999889999999999665444332222 1 699999999
Q ss_pred CCCCC---CCCCCccEEEEccCCCC----chHHHHHhcCCCcEEEEEe
Q 028016 134 GRKGW---PEFAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 134 ~~~~~---~~~~~~D~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~ 174 (215)
+.... .--+..|+|+++-.-+. +..++...||+||.+++++
T Consensus 131 Ar~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 131 ARHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp TTSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 87531 12268999999977654 3356778999999999876
No 202
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.75 E-value=1.9e-08 Score=79.22 Aligned_cols=106 Identities=29% Similarity=0.356 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CC-Cc
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FA-PY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~-~~ 144 (215)
....+||-||-|.|..+..+.+. .+..+++++|+++..++.|++.+...... ...++++++.+|+...... .+ +|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-E
T ss_pred CCcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCcc
Confidence 34689999999999999999876 33479999999999999999987654322 3447999999998654321 23 79
Q ss_pred cEEEEccCCC----------CchHHHHHhcCCCcEEEEEeC
Q 028016 145 DAIHVGAAAP----------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 145 D~V~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
|+|+.+...+ ++.+.+.+.|+|+|++++...
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 9999876542 344678999999999998653
No 203
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.74 E-value=1.1e-07 Score=78.99 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=80.7
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCccEEE
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAIH 148 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~V~ 148 (215)
.+|||+.||+|..++.+++..+...+|+++|+++.+++.+++|++.++. .++.+..+|+...... ...||+|+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~l~~~~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANVLRYRNRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHHHHHhCCCCCEEE
Confidence 5899999999999999998742236899999999999999999987654 4688888887754332 25799999
Q ss_pred EccCCC--CchHHHHHhcCCCcEEEEEeC
Q 028016 149 VGAAAP--EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 149 ~~~~~~--~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
.++.-. .+++.+.+.+++||.|+++.-
T Consensus 120 lDPfGs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 120 IDPFGTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred eCCCCCcHHHHHHHHHhcccCCEEEEEec
Confidence 987322 466788899999999999853
No 204
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.74 E-value=1.4e-07 Score=81.73 Aligned_cols=103 Identities=20% Similarity=0.130 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC--CCCCCCCcc
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~D 145 (215)
.+..+||||||.|.+...+|.. .|+..++|+|++...+..+.+.....+. .|+.++..|+.. .....+++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~-~p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~~~~~~~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKM-NPDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDLILNDLPNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHHHHHhcCccccc
Confidence 4568999999999999999999 4779999999999998888877766544 588888777632 122337899
Q ss_pred EEEEccCCCC--------------chHHHHHhcCCCcEEEEEeCCC
Q 028016 146 AIHVGAAAPE--------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~~--------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.|+...+-++ +++.+.+.|+|||.+.+.+...
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 9998887643 3457899999999999988764
No 205
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.74 E-value=9.7e-08 Score=76.47 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=83.3
Q ss_pred ccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccH----HHHHHHHHhCC---CCeEEEEecChHHHHHHHHHHHh
Q 028016 43 IGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGY----LTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 43 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~----~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~ 115 (215)
++...+...|.....+.+.+.. ....-+|+..||+||. +++.+...++. +.+|+|+|+|+.+++.|++....
T Consensus 91 ineT~FFRd~~~f~~L~~~~~~-~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~ 169 (287)
T PRK10611 91 TNLTAFFREAHHFPILAEHARR-RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYR 169 (287)
T ss_pred CCCCCccCCcHHHHHHHHHHHh-cCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCC
Confidence 3333344444444444444431 2234799999999994 33334443221 35799999999999999875321
Q ss_pred hc--------------------------ccCcccCCCeEEEeCCCCCC-CCCCCCccEEEEccCCCC--------chHHH
Q 028016 116 SA--------------------------AAPLLKEGSLSVHVGDGRKG-WPEFAPYDAIHVGAAAPE--------IPQAL 160 (215)
Q Consensus 116 ~~--------------------------~~~~~~~~~v~~~~~d~~~~-~~~~~~~D~V~~~~~~~~--------~~~~~ 160 (215)
.. +.+.+ ...+.|...|..+. ++..+.||+|+|...+.+ +++.+
T Consensus 170 ~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~l-r~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l 248 (287)
T PRK10611 170 QEELKTLSPQQLQRYFMRGTGPHEGLVRVRQEL-ANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRF 248 (287)
T ss_pred HHHHhcCCHHHHHHHcccccCCCCceEEEChHH-HccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHH
Confidence 00 00000 15678888888763 333478999999877644 34678
Q ss_pred HHhcCCCcEEEEEeCCC
Q 028016 161 IDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 161 ~~~Lk~gG~lv~~~~~~ 177 (215)
.+.|+|||+|++-....
T Consensus 249 ~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 249 VPLLKPDGLLFAGHSEN 265 (287)
T ss_pred HHHhCCCcEEEEeCccc
Confidence 89999999998855443
No 206
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.72 E-value=1.1e-07 Score=78.23 Aligned_cols=105 Identities=22% Similarity=0.252 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCCC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~ 142 (215)
++++.+|||.++..|.-+.++|..+...+.+++.|.+...+...+.++...++ .+..++..|..++. .. +
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~ef~~~~~~-~ 311 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGREFPEKEFP-G 311 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCcccccccccC-c
Confidence 68899999999999999999999998889999999999999999999998775 57778888876542 22 3
Q ss_pred CccEEEEccCCCC----------------------------chHHHHHhcCCCcEEEEEeCCC
Q 028016 143 PYDAIHVGAAAPE----------------------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 143 ~~D~V~~~~~~~~----------------------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+||.|+.++++.. ++..+..++++||+|++++++.
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 7999998887632 2234678899999999998763
No 207
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.68 E-value=2.8e-07 Score=72.95 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=74.4
Q ss_pred CCEEEEEcCCcc----HHHHHHHHHhC----CCCeEEEEecChHHHHHHHHHHHh-----hcccC--------ccc----
Q 028016 69 GMHALDIGSGTG----YLTACFALMVG----PQGRAVGVEHIPELVVSSIQNIEK-----SAAAP--------LLK---- 123 (215)
Q Consensus 69 ~~~vLdiG~G~G----~~~~~l~~~~~----~~~~v~~~D~s~~~~~~a~~~~~~-----~~~~~--------~~~---- 123 (215)
.-+|+..||+|| ++++.+.+.++ ..-+|+|.|+|..+++.|+.-.-. .++.. ...
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 578999999999 35555556553 247999999999999999764432 11100 000
Q ss_pred ------CCCeEEEeCCCCCCCCCCCCccEEEEccCC--------CCchHHHHHhcCCCcEEEEE
Q 028016 124 ------EGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 124 ------~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~--------~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...|.|...|.....+..+.||+|+|-.++ ..+.+.+...|+|||+|++=
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 146677777776655344789999999886 34557789999999999993
No 208
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.68 E-value=1.5e-07 Score=70.65 Aligned_cols=113 Identities=25% Similarity=0.283 Sum_probs=85.2
Q ss_pred HHHHHHHHh--cCCCCC-EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028016 56 ATCLQLLEE--NLKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 56 ~~~l~~l~~--~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
..+++.+.. .+.... +++|+|+|.|.-++.++-.. |+.+++.+|.....+...+......++ .|++++++
T Consensus 33 ~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~ 105 (184)
T PF02527_consen 33 RHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVING 105 (184)
T ss_dssp HHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES
T ss_pred HHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEe
Confidence 355555431 233333 89999999999999888774 778999999999999998888888776 68999999
Q ss_pred CCCCCCCCCCCccEEEEccCCC--CchHHHHHhcCCCcEEEEEeCC
Q 028016 133 DGRKGWPEFAPYDAIHVGAAAP--EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 133 d~~~~~~~~~~~D~V~~~~~~~--~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.+.+ ......||+|++-+..+ .+.+.+..++++||.+++.-+.
T Consensus 106 R~E~-~~~~~~fd~v~aRAv~~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 106 RAEE-PEYRESFDVVTARAVAPLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp -HHH-TTTTT-EEEEEEESSSSHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred eecc-cccCCCccEEEeehhcCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 9887 33337899999987653 5667788999999999987654
No 209
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.68 E-value=3.5e-08 Score=74.87 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCccH----HHHHHHHHhC--C--CCeEEEEecChHHHHHHHHHHHhhcc--------------c--C-cc
Q 028016 68 PGMHALDIGSGTGY----LTACFALMVG--P--QGRAVGVEHIPELVVSSIQNIEKSAA--------------A--P-LL 122 (215)
Q Consensus 68 ~~~~vLdiG~G~G~----~~~~l~~~~~--~--~~~v~~~D~s~~~~~~a~~~~~~~~~--------------~--~-~~ 122 (215)
+..+|+..||+||. +++.+..... . .-+++|+|+|+.+++.|++-.-.... . . ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999994 3333444221 1 25999999999999999863311100 0 0 00
Q ss_pred -----cCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEEeCC
Q 028016 123 -----KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 123 -----~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
-...+.|...|..+..+..+.||+|+|..++-. +.+.+.+.|+|||+|++-...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 026789999998884444589999999998743 446788999999999995443
No 210
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.66 E-value=5.8e-07 Score=73.85 Aligned_cols=126 Identities=16% Similarity=0.119 Sum_probs=94.5
Q ss_pred cCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCC------------------------------
Q 028016 44 GYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ------------------------------ 93 (215)
Q Consensus 44 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~------------------------------ 93 (215)
..+.....+.+.+.++.+-. ..++..++|--||+|.+.+..|-.. .+
T Consensus 169 ~~g~ApLketLAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~-~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~ 245 (381)
T COG0116 169 YDGPAPLKETLAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIA-ANIAPGLNRRFGFEFWDWFDKDLWDKLREEAE 245 (381)
T ss_pred cCCCCCchHHHHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhc-cccCCccccccchhhhhhccHHHHHHHHHHHH
Confidence 33444555555566655543 6777899999999999999887653 21
Q ss_pred --C-------eEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC------C---
Q 028016 94 --G-------RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP------E--- 155 (215)
Q Consensus 94 --~-------~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~------~--- 155 (215)
. .++|+|+++.+++.|+.|....++. +.+.|.++|+.......+.+|+|+++++.- .
T Consensus 246 ~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~-----d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~ 320 (381)
T COG0116 246 ERARRGKELPIIYGSDIDPRHIEGAKANARAAGVG-----DLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVA 320 (381)
T ss_pred HHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCC-----ceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHH
Confidence 1 3789999999999999999998886 789999999987655447899999999862 1
Q ss_pred -----chHHHHHhcCCCcEEEEEeCCC
Q 028016 156 -----IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 156 -----~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+-+.+.+.++--+..++++...
T Consensus 321 ~LY~~fg~~lk~~~~~ws~~v~tt~e~ 347 (381)
T COG0116 321 KLYREFGRTLKRLLAGWSRYVFTTSED 347 (381)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEccHH
Confidence 1134557777778888876653
No 211
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.64 E-value=1.1e-07 Score=70.04 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=57.9
Q ss_pred EEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEE
Q 028016 97 VGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRM 170 (215)
Q Consensus 97 ~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~l 170 (215)
+|+|+|+.|++.|+++....... ...+++++++|+.+.....++||+|++...++++ ++++.++|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~---~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS---CYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc---CCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 48999999999998776432110 1147899999998766665789999998877654 46899999999999
Q ss_pred EEEe
Q 028016 171 VIPV 174 (215)
Q Consensus 171 v~~~ 174 (215)
++..
T Consensus 78 ~i~d 81 (160)
T PLN02232 78 SILD 81 (160)
T ss_pred EEEE
Confidence 8754
No 212
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.62 E-value=8.8e-07 Score=79.72 Aligned_cols=124 Identities=17% Similarity=0.095 Sum_probs=87.1
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhC------------------------------------
Q 028016 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG------------------------------------ 91 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~------------------------------------ 91 (215)
....+.+.+.++.... ...++..++|.+||+|.+.+..+....
T Consensus 171 Apl~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~ 249 (702)
T PRK11783 171 APLKENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR 249 (702)
T ss_pred CCCcHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 3445556666665432 225678999999999999988765310
Q ss_pred -----CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC--CCCccEEEEccCCCC---------
Q 028016 92 -----PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAPE--------- 155 (215)
Q Consensus 92 -----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~V~~~~~~~~--------- 155 (215)
...+++|+|+++.+++.|++|+...++. +.+++.++|+.+.... .+.||+|++++++-.
T Consensus 250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~-----~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~ 324 (702)
T PRK11783 250 AGLAELPSKFYGSDIDPRVIQAARKNARRAGVA-----ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALI 324 (702)
T ss_pred hcccccCceEEEEECCHHHHHHHHHHHHHcCCC-----cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHH
Confidence 0136999999999999999999988764 5689999998765432 246999999998722
Q ss_pred -chHHHH---HhcCCCcEEEEEeCCC
Q 028016 156 -IPQALI---DQLKPGGRMVIPVGNI 177 (215)
Q Consensus 156 -~~~~~~---~~Lk~gG~lv~~~~~~ 177 (215)
+...+. +...+|+.+++.+++.
T Consensus 325 ~lY~~lg~~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 325 ALYSQLGRRLKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 112222 3334888888777653
No 213
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.56 E-value=1.6e-07 Score=71.40 Aligned_cols=96 Identities=21% Similarity=0.191 Sum_probs=66.5
Q ss_pred CCEEEEEcCCccHHHHHHH-HHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028016 69 GMHALDIGSGTGYLTACFA-LMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~-~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
..+.||+|+|.|+.+..++ +.+ .+|..+|..+..++.|++.+..... ...++.+....+..|...+||+|
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f---~~VDlVEp~~~Fl~~a~~~l~~~~~------~v~~~~~~gLQ~f~P~~~~YDlI 126 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVF---DEVDLVEPVEKFLEQAKEYLGKDNP------RVGEFYCVGLQDFTPEEGKYDLI 126 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC----SEEEEEES-HHHHHHHHHHTCCGGC------CEEEEEES-GGG----TT-EEEE
T ss_pred cceEEecccccchhHHHHHHHhc---CEeEEeccCHHHHHHHHHHhcccCC------CcceEEecCHhhccCCCCcEeEE
Confidence 4689999999999998774 333 7999999999999999987654111 23466666666666665799999
Q ss_pred EEccCCCC--------chHHHHHhcCCCcEEEEE
Q 028016 148 HVGAAAPE--------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 148 ~~~~~~~~--------~~~~~~~~Lk~gG~lv~~ 173 (215)
++.-.+-+ +++.+...|+|+|++++=
T Consensus 127 W~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 127 WIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 88766544 446788999999999984
No 214
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.55 E-value=7.1e-07 Score=68.27 Aligned_cols=96 Identities=21% Similarity=0.257 Sum_probs=79.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC-ccEE
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP-YDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~D~V 147 (215)
+.+++|||+|.|.-++.++-. .|+.+++.+|.....+.+.++...+.++ +|+.++++.+++.... .. ||+|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L------~nv~i~~~RaE~~~~~-~~~~D~v 139 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGL------ENVEIVHGRAEEFGQE-KKQYDVV 139 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCC------CCeEEehhhHhhcccc-cccCcEE
Confidence 589999999999999998844 4667899999999999998888888765 6899999998876553 23 9999
Q ss_pred EEccCC--CCchHHHHHhcCCCcEEEE
Q 028016 148 HVGAAA--PEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 148 ~~~~~~--~~~~~~~~~~Lk~gG~lv~ 172 (215)
.+.+.. ..+.+-+..++++||.++.
T Consensus 140 tsRAva~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 140 TSRAVASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred EeehccchHHHHHHHHHhcccCCcchh
Confidence 987654 5667888999999998764
No 215
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.55 E-value=1.9e-07 Score=70.38 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
+..+++.+. ...+...|.|+|||.+.++..+. ...+|..+|.-. .+-.++.+|+
T Consensus 60 vd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva---------------------~n~~Vtacdi 113 (219)
T PF05148_consen 60 VDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVA---------------------PNPRVTACDI 113 (219)
T ss_dssp HHHHHHHHC-TS-TTS-EEEES-TT-HHHHH------S---EEEEESS----------------------SSTTEEES-T
T ss_pred HHHHHHHHH-hcCCCEEEEECCCchHHHHHhcc----cCceEEEeeccC---------------------CCCCEEEecC
Confidence 467778876 23445799999999998885443 225799999744 2335778898
Q ss_pred CCCCCCCCCccEEEEccCC-----CCchHHHHHhcCCCcEEEEEe
Q 028016 135 RKGWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~-----~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
...+.+.++.|++++..++ ..++.++.++||+||.|.+.-
T Consensus 114 a~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 114 ANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEE
Confidence 8777777899998777654 456789999999999999954
No 216
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.53 E-value=4.5e-06 Score=66.04 Aligned_cols=105 Identities=16% Similarity=0.078 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CC-CC
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PE-FA 142 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~ 142 (215)
...-+||||.||.|.....+....+. ..++...|.++..++..++.+.+.++. +.+.|.++|+.+.. .. .-
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~-----~i~~f~~~dAfd~~~l~~l~p 208 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE-----DIARFEQGDAFDRDSLAALDP 208 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc-----cceEEEecCCCCHhHhhccCC
Confidence 34579999999999998888777532 268999999999999999999998875 45599999987632 11 13
Q ss_pred CccEEEEccCCCCch---------HHHHHhcCCCcEEEEEeCC
Q 028016 143 PYDAIHVGAAAPEIP---------QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~---------~~~~~~Lk~gG~lv~~~~~ 176 (215)
..+++++++.++-+. ..+...+.|||+|+++.-.
T Consensus 209 ~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQP 251 (311)
T PF12147_consen 209 APTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQP 251 (311)
T ss_pred CCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 579998888765444 3467889999999997633
No 217
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.53 E-value=2.1e-07 Score=68.66 Aligned_cols=92 Identities=20% Similarity=0.239 Sum_probs=74.2
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
.+.+.|+|+|+|.++...+... .+|+++|.++.....|++++...+. .+++++.+|+..... +..|+|+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~------~n~evv~gDA~~y~f--e~ADvvi 101 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGD------VNWEVVVGDARDYDF--ENADVVI 101 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCC------cceEEEecccccccc--cccceeH
Confidence 4789999999999999998874 7999999999999999999866554 699999999987654 5689997
Q ss_pred EccCCC--------CchHHHHHhcCCCcEEE
Q 028016 149 VGAAAP--------EIPQALIDQLKPGGRMV 171 (215)
Q Consensus 149 ~~~~~~--------~~~~~~~~~Lk~gG~lv 171 (215)
|-.--. .+++.+.+.||..+.++
T Consensus 102 cEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 102 CEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 754321 23356778888888876
No 218
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.51 E-value=8.7e-07 Score=66.24 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=96.0
Q ss_pred cCcCCCCCC--CCCCcCCCccccCCc-ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEe
Q 028016 24 DRACFVPDG--TPPYVDSPMAIGYNA-TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVE 100 (215)
Q Consensus 24 ~r~~~~~~~--~~~y~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D 100 (215)
|+.+++.+. ++...|..+.+.... .+-........... ..+.-.+.|||||-|.+...++..+ |+.-+.|.|
T Consensus 17 pqKr~YRQRAHsNP~sDh~l~yPvsP~~mDWS~~yp~f~~~----~~~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmE 91 (249)
T KOG3115|consen 17 PQKRYYRQRAHSNPLSDHTLEYPVSPQEMDWSKYYPDFRRA----LNKKVEFADIGCGYGGLLMKLAPKF-PDTLILGME 91 (249)
T ss_pred cHHHHHHHHhhcCCCccCcccCCCChHhCcHHHhhhhhhhh----ccccceEEeeccCccchhhhccccC-ccceeeeeh
Confidence 455555544 677778777665443 12222222222222 3344678999999999999999996 778999999
Q ss_pred cChHHHHHHHHHHHhhcccCc-ccCCCeEEEeCCCCCCCC---CCCCccEEEEccCCC--------------CchHHHHH
Q 028016 101 HIPELVVSSIQNIEKSAAAPL-LKEGSLSVHVGDGRKGWP---EFAPYDAIHVGAAAP--------------EIPQALID 162 (215)
Q Consensus 101 ~s~~~~~~a~~~~~~~~~~~~-~~~~~v~~~~~d~~~~~~---~~~~~D~V~~~~~~~--------------~~~~~~~~ 162 (215)
+.....++.++++...+..+. -.+.|+.+...+.....+ ..+...-.+...+-+ ++..+..-
T Consensus 92 IR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay 171 (249)
T KOG3115|consen 92 IRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAY 171 (249)
T ss_pred hhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHh
Confidence 999999999999987764322 224678888887766544 223344444333332 34456778
Q ss_pred hcCCCcEEEEEe
Q 028016 163 QLKPGGRMVIPV 174 (215)
Q Consensus 163 ~Lk~gG~lv~~~ 174 (215)
+|++||.++..+
T Consensus 172 ~l~~gg~~ytit 183 (249)
T KOG3115|consen 172 VLREGGILYTIT 183 (249)
T ss_pred hhhcCceEEEEe
Confidence 899999999865
No 219
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.51 E-value=8.3e-07 Score=70.66 Aligned_cols=95 Identities=21% Similarity=0.160 Sum_probs=75.5
Q ss_pred Cc-ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028016 46 NA-TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 46 ~~-~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
|+ ++..+.+...+++.+. +.++..|||+|+|+|.+|..+++.. .+++++|.++...+..++.+.. .
T Consensus 9 gQnFL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~--------~ 75 (262)
T PF00398_consen 9 GQNFLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS--------N 75 (262)
T ss_dssp TSSEEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT--------C
T ss_pred CcCeeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh--------c
Confidence 44 4568888999999987 6688999999999999999999985 7999999999999988876642 2
Q ss_pred CCeEEEeCCCCCCCCCC---CCccEEEEccCC
Q 028016 125 GSLSVHVGDGRKGWPEF---APYDAIHVGAAA 153 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~---~~~D~V~~~~~~ 153 (215)
.+++++.+|+....... +....|+++.+.
T Consensus 76 ~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 76 PNVEVINGDFLKWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp SSEEEEES-TTTSCGGGHCSSSEEEEEEEETG
T ss_pred ccceeeecchhccccHHhhcCCceEEEEEecc
Confidence 68999999998753321 245577777766
No 220
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.47 E-value=9.1e-07 Score=67.58 Aligned_cols=119 Identities=26% Similarity=0.351 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcc---cCcccCCCe
Q 028016 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA---APLLKEGSL 127 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~v 127 (215)
.+.....+++.+. +.+++.++|+|||.|.....++-..+- .+.+|+|+.+...+.|+........ .......++
T Consensus 27 ~~~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~-~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v 103 (205)
T PF08123_consen 27 SPEFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGC-KKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV 103 (205)
T ss_dssp HHHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred CHHHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCC-cEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 4445777888776 888999999999999998888766543 5699999999988887664433211 011223578
Q ss_pred EEEeCCCCCCCCC---CCCccEEEEccCC-C-Cch---HHHHHhcCCCcEEEE
Q 028016 128 SVHVGDGRKGWPE---FAPYDAIHVGAAA-P-EIP---QALIDQLKPGGRMVI 172 (215)
Q Consensus 128 ~~~~~d~~~~~~~---~~~~D~V~~~~~~-~-~~~---~~~~~~Lk~gG~lv~ 172 (215)
++..+|+.+.... -...|+|+++..+ . .+. .+....||+|-++|.
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 8888887653110 1357999998754 2 222 344567888877765
No 221
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.42 E-value=2.2e-06 Score=69.73 Aligned_cols=115 Identities=9% Similarity=0.084 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCC---CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE-
Q 028016 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV- 129 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~- 129 (215)
++......+...+.++..++|+|||+|.-+..+++.+.. ...++++|+|...++.+.+++.... ++.+.+
T Consensus 62 iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~------~p~l~v~ 135 (319)
T TIGR03439 62 ILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN------FSHVRCA 135 (319)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc------CCCeEEE
Confidence 334444445545777889999999999988877776632 2579999999999999998887222 134544
Q ss_pred -EeCCCCCC---CCC---CCCccEEEEcc-CCC--------CchHHHHH-hcCCCcEEEEEe
Q 028016 130 -HVGDGRKG---WPE---FAPYDAIHVGA-AAP--------EIPQALID-QLKPGGRMVIPV 174 (215)
Q Consensus 130 -~~~d~~~~---~~~---~~~~D~V~~~~-~~~--------~~~~~~~~-~Lk~gG~lv~~~ 174 (215)
+.+|..+. .+. .....+++..+ ++- .++..+.+ .|+|||.|++-+
T Consensus 136 ~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 136 GLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred EEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 77877553 111 13456665554 332 24456778 899999999955
No 222
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.41 E-value=2.6e-06 Score=68.64 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe
Q 028016 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 131 (215)
Q Consensus 52 ~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~ 131 (215)
|=+..++++.+. +.++..++|..+|.|+.+..+++.+++ ++|+|+|.++.+++.+++++..+. .++.+++
T Consensus 6 pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-------~R~~~i~ 75 (305)
T TIGR00006 6 SVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-------GRVVLIH 75 (305)
T ss_pred chhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-------CcEEEEe
Confidence 335788888887 778889999999999999999998754 899999999999999999886532 5889999
Q ss_pred CCCCCCC---C--CCCCccEEEEccC
Q 028016 132 GDGRKGW---P--EFAPYDAIHVGAA 152 (215)
Q Consensus 132 ~d~~~~~---~--~~~~~D~V~~~~~ 152 (215)
++..+.. . ...++|.|+.+..
T Consensus 76 ~nF~~l~~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 76 DNFANFFEHLDELLVTKIDGILVDLG 101 (305)
T ss_pred CCHHHHHHHHHhcCCCcccEEEEecc
Confidence 9877521 1 2256999987753
No 223
>PRK10742 putative methyltransferase; Provisional
Probab=98.41 E-value=2e-06 Score=66.92 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=70.3
Q ss_pred HHHHHHHhcCCCCC--EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC---CCeEEEe
Q 028016 57 TCLQLLEENLKPGM--HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE---GSLSVHV 131 (215)
Q Consensus 57 ~~l~~l~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~---~~v~~~~ 131 (215)
.+++.+. ++++. +|||+.+|+|..+..++.+ | .+|+++|.++......++++........+.. .+++++.
T Consensus 77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~-G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV-G--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 3344443 66776 9999999999999999988 4 6799999999999999988876422111211 4688899
Q ss_pred CCCCCCCCC-CCCccEEEEccCCCC
Q 028016 132 GDGRKGWPE-FAPYDAIHVGAAAPE 155 (215)
Q Consensus 132 ~d~~~~~~~-~~~~D~V~~~~~~~~ 155 (215)
+|....+.. .+.||+|+.++++++
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCCCC
Confidence 987665432 247999999998865
No 224
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=3.5e-06 Score=63.78 Aligned_cols=102 Identities=25% Similarity=0.305 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
.++.+.. ..+++++.|+|+|+..|+.+..+++.+++.+.|+++|+.+-. ...++.++++|+.
T Consensus 34 ~el~~k~-~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------------~~~~V~~iq~d~~ 95 (205)
T COG0293 34 LELNEKF-KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------------PIPGVIFLQGDIT 95 (205)
T ss_pred HHHHHhc-CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------------cCCCceEEeeecc
Confidence 3444444 246889999999999999999999998877789999997742 1156899999987
Q ss_pred CCC--------CCCCCccEEEEccCC--------CC---------chHHHHHhcCCCcEEEEEeC
Q 028016 136 KGW--------PEFAPYDAIHVGAAA--------PE---------IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 136 ~~~--------~~~~~~D~V~~~~~~--------~~---------~~~~~~~~Lk~gG~lv~~~~ 175 (215)
... ....++|+|+++... ++ .++-+..+|+|||.+++...
T Consensus 96 ~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 96 DEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred CccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 532 122457999988754 22 11345679999999998653
No 225
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.36 E-value=2.3e-06 Score=66.42 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
+..+++.+.. ......|.|+|||.+.++. . ...+|+.+|+.+ .+-+++.+|+
T Consensus 168 ld~ii~~ik~-r~~~~vIaD~GCGEakiA~---~---~~~kV~SfDL~a---------------------~~~~V~~cDm 219 (325)
T KOG3045|consen 168 LDVIIRKIKR-RPKNIVIADFGCGEAKIAS---S---ERHKVHSFDLVA---------------------VNERVIACDM 219 (325)
T ss_pred HHHHHHHHHh-CcCceEEEecccchhhhhh---c---cccceeeeeeec---------------------CCCceeeccc
Confidence 3466666662 2345688999999987664 2 226899999733 3567888899
Q ss_pred CCCCCCCCCccEEEEccCC-----CCchHHHHHhcCCCcEEEEEe
Q 028016 135 RKGWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~-----~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
...+..+++.|+++++.++ ..++.++.++|++||.+++.-
T Consensus 220 ~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 220 RNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred cCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEe
Confidence 8877777899988766543 456789999999999999953
No 226
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.35 E-value=5.9e-06 Score=67.15 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh-hcccCcccCCCeEEEeCCCCCCCC-CCCCc
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-SAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~ 144 (215)
+.-.+||-+|.|.|.-...+.+. ....+++.+|.+|.|++.++++..- .-..+.++.++++++..|+.+... ..+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 44578999999999999999886 3348999999999999999844321 112344667899999999876443 33689
Q ss_pred cEEEEccCCCCch-----------HHHHHhcCCCcEEEEEeCCCc
Q 028016 145 DAIHVGAAAPEIP-----------QALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 145 D~V~~~~~~~~~~-----------~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
|.|+.+.+-+..+ ..+.+.|+++|.+++..++..
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y 411 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY 411 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc
Confidence 9999887665433 357789999999999776654
No 227
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.35 E-value=9.9e-06 Score=64.38 Aligned_cols=103 Identities=21% Similarity=0.263 Sum_probs=64.8
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH-hhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028016 70 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE-KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 70 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
.+|+=||||. -..++.+++..++...++++|+++.+++.+++.+. ..++. .++.++.+|......+...||+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-----~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS-----KRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc-----CCeEEEecchhccccccccCCEE
Confidence 5999999998 55666667665666789999999999999998877 33443 68999999987654444689999
Q ss_pred EEccCCC-------CchHHHHHhcCCCcEEEEEeCCC
Q 028016 148 HVGAAAP-------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 148 ~~~~~~~-------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+...-.. .+++.+.+.++||..+++=..++
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 8776543 46678899999999999865554
No 228
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1e-05 Score=60.60 Aligned_cols=112 Identities=27% Similarity=0.329 Sum_probs=82.7
Q ss_pred HHHHHHHHHH-hcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028016 54 MHATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 54 ~~~~~l~~l~-~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
+.+.++.-+. ..++++.+||-+|+.+|....+++.-.+ ++.++++|.++......-....+ .+|+-.+.+
T Consensus 61 LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~--------R~Ni~PIL~ 131 (231)
T COG1889 61 LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK--------RPNIIPILE 131 (231)
T ss_pred HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh--------CCCceeeec
Confidence 3455555444 3478899999999999999999999876 68999999999875554433332 168889999
Q ss_pred CCCCCCC---CCCCccEEEEccCCCC----chHHHHHhcCCCcEEEEEe
Q 028016 133 DGRKGWP---EFAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 133 d~~~~~~---~~~~~D~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~ 174 (215)
|+..... --+..|+|+.+-.-+. +..++...||+||.+++++
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred ccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 9875322 1257999998876554 3357788999999888754
No 229
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.28 E-value=2.7e-05 Score=56.06 Aligned_cols=105 Identities=26% Similarity=0.378 Sum_probs=67.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028016 67 KPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
.+..+|+|+|||.|+++..++..+ .+..+|+++|.++..++.+.++....... ...++.+..++....... ..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD---LEKRLSFIQGDIADESSS-DP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch---hhccchhhccchhhhccc-CC
Confidence 556899999999999999999843 24479999999999999998887765521 013555555555433222 55
Q ss_pred ccEEEEccCCCCchHHHH-HhcCCCcEEEEEeC
Q 028016 144 YDAIHVGAAAPEIPQALI-DQLKPGGRMVIPVG 175 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~-~~Lk~gG~lv~~~~ 175 (215)
.++++.-...-.+-..+. ..++++-..++.+|
T Consensus 100 ~~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~~vp 132 (141)
T PF13679_consen 100 PDILVGLHACGDLSDRALRLFIRPNARFLVLVP 132 (141)
T ss_pred CeEEEEeecccchHHHHHHHHHHcCCCEEEEcC
Confidence 677765555444443332 23345555544433
No 230
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.17 E-value=1e-05 Score=61.91 Aligned_cols=75 Identities=25% Similarity=0.361 Sum_probs=58.0
Q ss_pred EEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEcc
Q 028016 72 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGA 151 (215)
Q Consensus 72 vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~ 151 (215)
|.||||-.|++...+++. +...+++++|+++.-++.|++++...+.. +++++..+|........+..|.|+..+
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-----~~i~~rlgdGL~~l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLE-----DRIEVRLGDGLEVLKPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-T-----TTEEEEE-SGGGG--GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCc-----ccEEEEECCcccccCCCCCCCEEEEec
Confidence 689999999999999998 55578999999999999999999998765 789999999887666534478887666
Q ss_pred C
Q 028016 152 A 152 (215)
Q Consensus 152 ~ 152 (215)
.
T Consensus 75 M 75 (205)
T PF04816_consen 75 M 75 (205)
T ss_dssp E
T ss_pred C
Confidence 4
No 231
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.16 E-value=4.7e-06 Score=63.66 Aligned_cols=101 Identities=18% Similarity=0.070 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
+.-..++|||||-|.+...+... +- .+++.+|.|-.|++.++.. +..+ -......+|.......++++|+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e-~v-ekli~~DtS~~M~~s~~~~-qdp~-------i~~~~~v~DEE~Ldf~ens~DL 140 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGE-GV-EKLIMMDTSYDMIKSCRDA-QDPS-------IETSYFVGDEEFLDFKENSVDL 140 (325)
T ss_pred hhCcceeecccchhhhhHHHHhc-ch-hheeeeecchHHHHHhhcc-CCCc-------eEEEEEecchhcccccccchhh
Confidence 34468999999999999998776 33 7999999999999988752 1111 1234455665554455589999
Q ss_pred EEEccCCCCc------hHHHHHhcCCCcEEEEEeCCC
Q 028016 147 IHVGAAAPEI------PQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 147 V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|++...+++. +..+...|||+|.++.+.-.+
T Consensus 141 iisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasmlgg 177 (325)
T KOG2940|consen 141 IISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGG 177 (325)
T ss_pred hhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhcc
Confidence 9988877653 357888999999999876443
No 232
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.16 E-value=1.7e-07 Score=64.11 Aligned_cols=94 Identities=24% Similarity=0.381 Sum_probs=38.3
Q ss_pred EEEcCCccHHHHHHHHHhCCCC--eEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC--CCCccEEE
Q 028016 73 LDIGSGTGYLTACFALMVGPQG--RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIH 148 (215)
Q Consensus 73 LdiG~G~G~~~~~l~~~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~V~ 148 (215)
||+|+..|..+..+++.+.+.. +++++|..+. .+...+.++..+.. .++.++.++..+..+. .+++|+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-----~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-----DRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC-----CeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 6899999999999988765543 7999999995 22333333333332 5799999998654321 26899999
Q ss_pred EccCCC-----CchHHHHHhcCCCcEEEE
Q 028016 149 VGAAAP-----EIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 149 ~~~~~~-----~~~~~~~~~Lk~gG~lv~ 172 (215)
.++.-. .-++.+.+.|+|||.+++
T Consensus 75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 75 IDGDHSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EES---HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 998632 233567789999999886
No 233
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.15 E-value=8.7e-06 Score=62.55 Aligned_cols=99 Identities=24% Similarity=0.346 Sum_probs=76.4
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHH----HHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPEL----VVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP- 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~----~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~- 139 (215)
|++|+.+||-+|+++|.....++...||.+-|+++|.|... +..|+++ .|+..+..|+.....
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------------tNiiPIiEDArhP~KY 220 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------------TNIIPIIEDARHPAKY 220 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------------CCceeeeccCCCchhe
Confidence 58999999999999999999999999999999999998854 3333322 688888888765321
Q ss_pred --CCCCccEEEEccCCCCch----HHHHHhcCCCcEEEEEeC
Q 028016 140 --EFAPYDAIHVGAAAPEIP----QALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 140 --~~~~~D~V~~~~~~~~~~----~~~~~~Lk~gG~lv~~~~ 175 (215)
.-...|+||++-.-+... -++...||+||-+++++-
T Consensus 221 RmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 221 RMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred eeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 224689999887665433 356789999999999763
No 234
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.12 E-value=6.5e-06 Score=69.62 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=57.5
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEE-----ecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGV-----EHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~-----D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
..+||+|||+|+++..+..+ + |+.+ |..+..++.|-++ ++ +..--+.+. ...+...+.|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-~----V~t~s~a~~d~~~~qvqfaleR----Gv------pa~~~~~~s-~rLPfp~~~f 182 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-N----VTTMSFAPNDEHEAQVQFALER----GV------PAMIGVLGS-QRLPFPSNAF 182 (506)
T ss_pred EEEEeccceeehhHHHHhhC-C----ceEEEcccccCCchhhhhhhhc----Cc------chhhhhhcc-ccccCCccch
Confidence 46899999999999999876 2 3333 3333445554332 21 111111111 2233344899
Q ss_pred cEEEEccCCCC-------chHHHHHhcCCCcEEEEEeCCCc
Q 028016 145 DAIHVGAAAPE-------IPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 145 D~V~~~~~~~~-------~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
|+|+|...... ++-++-++|+|||+++.+.+...
T Consensus 183 DmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 183 DMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 99998875532 33468899999999999876543
No 235
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.11 E-value=1.4e-05 Score=57.48 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=47.4
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 71 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
+++|+|||.|..+..+++. ++..+++++|.++.+.+.+++++..++. .++.+....+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~-~~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK-GAEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHh-CCCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeeee
Confidence 4899999999999999887 4656899999999999999999887654 35666665544
No 236
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=2.3e-05 Score=63.91 Aligned_cols=107 Identities=22% Similarity=0.261 Sum_probs=74.6
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCC---CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC----
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---- 137 (215)
.++|+.+|||.++..|+-+..+...+.. .+.+++-|.+...+......+.... ..++.+...++...
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~------~~~~~v~~~~~~~~p~~~ 225 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP------SPNLLVTNHDASLFPNIY 225 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC------Ccceeeecccceeccccc
Confidence 4899999999999999999888877632 2489999999999888877763321 13444443333221
Q ss_pred ---CC--CCCCccEEEEccCCCC-----------------------------chHHHHHhcCCCcEEEEEeCCC
Q 028016 138 ---WP--EFAPYDAIHVGAAAPE-----------------------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 138 ---~~--~~~~~D~V~~~~~~~~-----------------------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.. ....||.|+++.++.. ++.+..++||+||.+++++++.
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 11 2247999998876511 1134678999999999998764
No 237
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.07 E-value=4.1e-06 Score=62.88 Aligned_cols=92 Identities=29% Similarity=0.376 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---------CC
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---------GW 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---------~~ 138 (215)
++.+|||+||++|+.+..++++.++..+|+++|+.+.. . ..++..+++|... ..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~--------~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------P--------LQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S---------TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------c--------ccceeeeecccchhhHHHhhhhhc
Confidence 45899999999999999999886456899999998761 0 0233333444321 11
Q ss_pred C-CCCCccEEEEccCCC--------Cch---------HHHHHhcCCCcEEEEEeCC
Q 028016 139 P-EFAPYDAIHVGAAAP--------EIP---------QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 139 ~-~~~~~D~V~~~~~~~--------~~~---------~~~~~~Lk~gG~lv~~~~~ 176 (215)
. ....+|+|+++.... +.. ..+...|++||.+++-+-.
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 1 125899999998331 111 2345789999988885533
No 238
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.04 E-value=4.4e-05 Score=58.10 Aligned_cols=83 Identities=28% Similarity=0.381 Sum_probs=70.4
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.++.+.++.|+||-.+++..++.+. ++...+++.|+++.-++.|.+++...+.. +.+++..+|........+.+
T Consensus 13 ~V~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~-----~~i~vr~~dgl~~l~~~d~~ 86 (226)
T COG2384 13 LVKQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLS-----ERIDVRLGDGLAVLELEDEI 86 (226)
T ss_pred HHHcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCc-----ceEEEeccCCccccCccCCc
Confidence 3556677999999999999999998 56689999999999999999999988776 78999999987766665689
Q ss_pred cEEEEccCC
Q 028016 145 DAIHVGAAA 153 (215)
Q Consensus 145 D~V~~~~~~ 153 (215)
|+|+..+.-
T Consensus 87 d~ivIAGMG 95 (226)
T COG2384 87 DVIVIAGMG 95 (226)
T ss_pred CEEEEeCCc
Confidence 988777653
No 239
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.04 E-value=7.1e-05 Score=59.98 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=39.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 115 (215)
..+|||+|||+|..+..+...++...+++++|.|+.+++.++..+..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 46999999999987777777665447899999999999999887654
No 240
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.00 E-value=1.6e-05 Score=63.83 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=75.2
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC--C---C--
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG--R---K-- 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~--~---~-- 136 (215)
.++++.+||-+|+|+ |.++...++.+|. .+|+.+|.++..++.|++ +.. ..+....... . +
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~Ga---------~~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-FGA---------TVTDPSSHKSSPQELAELV 234 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-hCC---------eEEeeccccccHHHHHHHH
Confidence 478899999999998 9999999999876 799999999999999987 432 1222221111 0 0
Q ss_pred -CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028016 137 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 137 -~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
.......+|+.+.....+-..+.....++.||.+++.-
T Consensus 235 ~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred HhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEec
Confidence 11122459999999999988899999999999977643
No 241
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.00 E-value=0.00011 Score=59.12 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=48.6
Q ss_pred CCEEEEEcCCccHH-HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh-cccCcccCCCeEEEeCCCCC----CC-CCC
Q 028016 69 GMHALDIGSGTGYL-TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHVGDGRK----GW-PEF 141 (215)
Q Consensus 69 ~~~vLdiG~G~G~~-~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~v~~~~~d~~~----~~-~~~ 141 (215)
.-++||||||.... .+..++..+ -+++|.|+++..++.|++++..+ .+. .+|+++...-.. .. ...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~--W~fvaTdID~~sl~~A~~nv~~N~~L~-----~~I~l~~~~~~~~i~~~i~~~~ 175 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG--WSFVATDIDPKSLESARENVERNPNLE-----SRIELRKQKNPDNIFDGIIQPN 175 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-T-----TTEEEEE--ST-SSTTTSTT--
T ss_pred ceEeecCCccHHHHHHHHhhhhcC--CeEEEecCCHHHHHHHHHHHHhccccc-----cceEEEEcCCccccchhhhccc
Confidence 45899999998644 444455543 79999999999999999999988 655 678887653222 11 123
Q ss_pred CCccEEEEccCCCCchHHH
Q 028016 142 APYDAIHVGAAAPEIPQAL 160 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~ 160 (215)
+.||+.+|++++..-.+++
T Consensus 176 e~~dftmCNPPFy~s~~e~ 194 (299)
T PF05971_consen 176 ERFDFTMCNPPFYSSQEEA 194 (299)
T ss_dssp S-EEEEEE-----SS----
T ss_pred ceeeEEecCCccccChhhh
Confidence 6899999999997666544
No 242
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=7.3e-05 Score=59.59 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028016 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
++.++++.|. ..++...+|..-|.|+.+..+++.+++.++++++|.++.+++.|++.+..++ +++.+++++
T Consensus 11 Ll~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-------~r~~~v~~~ 81 (314)
T COG0275 11 LLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-------GRVTLVHGN 81 (314)
T ss_pred HHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-------CcEEEEeCc
Confidence 5788899987 8888999999999999999999998777889999999999999999987654 589999988
Q ss_pred CCCCC---C--CCCCccEEEEcc
Q 028016 134 GRKGW---P--EFAPYDAIHVGA 151 (215)
Q Consensus 134 ~~~~~---~--~~~~~D~V~~~~ 151 (215)
+.... . ..+.+|.|+.+.
T Consensus 82 F~~l~~~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 82 FANLAEALKELGIGKVDGILLDL 104 (314)
T ss_pred HHHHHHHHHhcCCCceeEEEEec
Confidence 76421 1 225788887664
No 243
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.98 E-value=1.8e-05 Score=58.98 Aligned_cols=102 Identities=22% Similarity=0.288 Sum_probs=63.1
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHH------HHHHHHhhcccCcccCCCeEEEeCCCCCCC
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS------SIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~------a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 138 (215)
.++++++|+|+-.|.|+++..++..+++.+.|+++-..+...-. .+....+... .|.+.+-.+.....
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~------aN~e~~~~~~~A~~ 118 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY------ANVEVIGKPLVALG 118 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh------hhhhhhCCcccccC
Confidence 38999999999999999999999999999999988655431100 0111111111 23443333332222
Q ss_pred CCCCCccEEEEccCCC-------------CchHHHHHhcCCCcEEEEE
Q 028016 139 PEFAPYDAIHVGAAAP-------------EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~-------------~~~~~~~~~Lk~gG~lv~~ 173 (215)
+ .+..|++......+ .+..++.+.|||||++++.
T Consensus 119 ~-pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 119 A-PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred C-CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 2 25566665433322 2335788999999999884
No 244
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.98 E-value=7.9e-05 Score=60.88 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=71.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFA 142 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 142 (215)
.++|+.+|+-.|+|. |.++..+++.++ .+|+++|.+++-.+.|++.-. -.++.....+... -.+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGA------------d~~i~~~~~~~~~~~~~ 228 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGA------------DHVINSSDSDALEAVKE 228 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCC------------cEEEEcCCchhhHHhHh
Confidence 488999999999994 788889999876 799999999999998876321 1233322111111 112
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028016 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
.||+|+...+ ...++...+.|++||.+++.-
T Consensus 229 ~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 229 IADAIIDTVG-PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred hCcEEEECCC-hhhHHHHHHHHhcCCEEEEEC
Confidence 4999999999 888999999999999999853
No 245
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.97 E-value=0.00015 Score=60.29 Aligned_cols=99 Identities=19% Similarity=0.315 Sum_probs=71.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC-CCC---CCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-GRK---GWPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d-~~~---~~~~ 140 (215)
..++.+|+-+|||+ |.++..+++..|. .+++++|.++..++.|++..... .+.....+ ... ....
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g~~---------~~~~~~~~~~~~~~~~~t~ 235 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGGAD---------VVVNPSEDDAGAEILELTG 235 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhCCCe---------EeecCccccHHHHHHHHhC
Confidence 34455999999998 9999999998766 78999999999999998754321 11111111 000 1112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028016 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
...+|+++-........+.+.+++++||.+++.-
T Consensus 236 g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 236 GRGADVVIEAVGSPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEe
Confidence 1369999988887777889999999999998853
No 246
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.97 E-value=7.9e-05 Score=56.49 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=72.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCCC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 143 (215)
..+|.+||++|-|-|.....+-.+ .| .+=+.+|..+..++..++. +. .+.+++.+..+-+++... .+..
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~----gw---~ek~nViil~g~WeDvl~~L~d~~ 169 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDW----GW---REKENVIILEGRWEDVLNTLPDKH 169 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhc----cc---ccccceEEEecchHhhhccccccC
Confidence 467899999999999988888766 56 4567789999998877653 32 233788888876665332 2367
Q ss_pred ccEEEEccCC------CCchHHHHHhcCCCcEEEEE
Q 028016 144 YDAIHVGAAA------PEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~------~~~~~~~~~~Lk~gG~lv~~ 173 (215)
||.|+.+.-. .++.+.+.++|||+|++-+.
T Consensus 170 FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 170 FDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred cceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 9999877643 23446788999999988763
No 247
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.94 E-value=2.4e-05 Score=58.36 Aligned_cols=95 Identities=21% Similarity=0.237 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
-.+.+|||+|+|+|..++..++. |. ..++..|+++...+.++-|...+++ ++.+...|... ....||+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~a-GA-~~v~a~d~~P~~~~ai~lNa~angv-------~i~~~~~d~~g---~~~~~Dl 145 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARA-GA-AEVVAADIDPWLEQAIRLNAAANGV-------SILFTHADLIG---SPPAFDL 145 (218)
T ss_pred cccceeeecccccChHHHHHHHh-hh-HHHHhcCCChHHHHHhhcchhhccc-------eeEEeeccccC---CCcceeE
Confidence 34789999999999999988887 44 6899999999888888888777663 67888887665 2267999
Q ss_pred EEEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028016 147 IHVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 147 V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
|+....+-. +++ +...|+..|.-++..
T Consensus 146 ~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 146 LLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred EEeeceecCchHHHHHHH-HHHHHHhCCCEEEEe
Confidence 987765521 223 556666667666543
No 248
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.94 E-value=9.1e-05 Score=60.38 Aligned_cols=92 Identities=23% Similarity=0.306 Sum_probs=63.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+++++||+||++|+.+..++++ | .+|+++|..+ +. ..+. ..+++....++.....+..+.+|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-G--~~V~AVD~g~-l~----~~L~--------~~~~V~h~~~d~fr~~p~~~~vD 272 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-G--MFVTAVDNGP-MA----QSLM--------DTGQVEHLRADGFKFRPPRKNVD 272 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-C--CEEEEEechh-cC----Hhhh--------CCCCEEEEeccCcccCCCCCCCC
Confidence 467899999999999999999988 3 6999999544 21 1121 12688888888776655457899
Q ss_pred EEEEccCCC--CchHHHHHhcCCC--cEEEEE
Q 028016 146 AIHVGAAAP--EIPQALIDQLKPG--GRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~--~~~~~~~~~Lk~g--G~lv~~ 173 (215)
.++|+.... .+.+.+.+.|..| ...|++
T Consensus 273 wvVcDmve~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 273 WLVCDMVEKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred EEEEecccCHHHHHHHHHHHHhcCcccEEEEE
Confidence 999997653 2334455555544 344443
No 249
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.89 E-value=5.1e-05 Score=62.83 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=81.2
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC
Q 028016 60 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 139 (215)
Q Consensus 60 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 139 (215)
..+.....++..++|+|||.|..+..++...+ .++++++.++..+..+........+. .+-.++.++.....+
T Consensus 102 ~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~-----~k~~~~~~~~~~~~f 174 (364)
T KOG1269|consen 102 VALRESCFPGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLD-----NKCNFVVADFGKMPF 174 (364)
T ss_pred HHHhhcCcccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhh-----hhcceehhhhhcCCC
Confidence 33444577888999999999999999887632 68999999998877776655554443 344557778777777
Q ss_pred CCCCccEEEEccCCCC------chHHHHHhcCCCcEEEEE
Q 028016 140 EFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~ 173 (215)
++..||.+.+.....+ ..+++.++++|||+.++-
T Consensus 175 edn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 175 EDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 7789999977766654 346889999999999984
No 250
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.86 E-value=0.00031 Score=50.28 Aligned_cols=98 Identities=32% Similarity=0.378 Sum_probs=64.5
Q ss_pred EEEEcCCccHHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC--CCCCC-CCccEE
Q 028016 72 ALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEF-APYDAI 147 (215)
Q Consensus 72 vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~~D~V 147 (215)
++|+|||+|... .+... ... ..++++|.++.++..++..... ... ..+.+..++... ..... ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARL-GGRGAYVVGVDLSPEMLALARARAEG-AGL-----GLVDFVVADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHh-CCCCceEEEEeCCHHHHHHHHhhhhh-cCC-----CceEEEEeccccCCCCCCCCCceeEE
Confidence 999999999977 44444 222 3789999999998885443322 110 116777777665 22222 379999
Q ss_pred EEccCC-----CCchHHHHHhcCCCcEEEEEeCCC
Q 028016 148 HVGAAA-----PEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 148 ~~~~~~-----~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
...... ......+.+.++|+|.+++.....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 333333 345577889999999999976653
No 251
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.85 E-value=0.0013 Score=51.11 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028016 53 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 53 ~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
..+.+++-+....--.|.+||-+|=..- .|+.++-. +...+++.+|+++..++..++.....+. +++....
T Consensus 29 T~~~Ra~~~~~~gdL~gk~il~lGDDDL-tSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl-------~i~~~~~ 99 (243)
T PF01861_consen 29 TTLRRAALMAERGDLEGKRILFLGDDDL-TSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGL-------PIEAVHY 99 (243)
T ss_dssp HHHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT---------EEEE--
T ss_pred HHHHHHHHHHhcCcccCCEEEEEcCCcH-HHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCC-------ceEEEEe
Confidence 3455554444423335789999995542 33333333 3348999999999999999998888764 5999999
Q ss_pred CCCCCCCCC--CCccEEEEccCCC-----CchHHHHHhcCCCc-EEEEEeCC
Q 028016 133 DGRKGWPEF--APYDAIHVGAAAP-----EIPQALIDQLKPGG-RMVIPVGN 176 (215)
Q Consensus 133 d~~~~~~~~--~~~D~V~~~~~~~-----~~~~~~~~~Lk~gG-~lv~~~~~ 176 (215)
|....++.. ++||+++.+++.. -+..+....||..| ..++.+..
T Consensus 100 DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 100 DLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp -TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred cccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 999887753 7999999998764 24456677787766 55555443
No 252
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.85 E-value=1.2e-05 Score=61.04 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----CCCC
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EFAP 143 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~ 143 (215)
....|+|..||.|+.++..+..+ ..|+++|+|+..+..|+.+++..|.. ++++|+++|+.+... +...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~-----~rItFI~GD~ld~~~~lq~~K~~ 165 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVP-----DRITFICGDFLDLASKLKADKIK 165 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCC-----ceeEEEechHHHHHHHHhhhhhe
Confidence 34689999999999999998885 58999999999999999999998876 699999999886433 2234
Q ss_pred ccEEEEccCC
Q 028016 144 YDAIHVGAAA 153 (215)
Q Consensus 144 ~D~V~~~~~~ 153 (215)
+|.|+..++.
T Consensus 166 ~~~vf~sppw 175 (263)
T KOG2730|consen 166 YDCVFLSPPW 175 (263)
T ss_pred eeeeecCCCC
Confidence 6677776654
No 253
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.85 E-value=9.8e-05 Score=57.52 Aligned_cols=92 Identities=17% Similarity=0.104 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
+..+.+.+...+.+..+|+|||||.--++...... .++..|+|+|++..+++.....+...+ .+.++...|.
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~-------~~~~~~v~Dl 163 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLG-------VPHDARVRDL 163 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT--------CEEEEEE-T
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhC-------CCcceeEeee
Confidence 34445555445666789999999999988877755 455799999999999999998887765 3677778888
Q ss_pred CCCCCCCCCccEEEEccCCCC
Q 028016 135 RKGWPEFAPYDAIHVGAAAPE 155 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~ 155 (215)
....+. ...|+.+.--.++.
T Consensus 164 ~~~~~~-~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 164 LSDPPK-EPADLALLLKTLPC 183 (251)
T ss_dssp TTSHTT-SEESEEEEET-HHH
T ss_pred eccCCC-CCcchhhHHHHHHH
Confidence 776554 77999987766543
No 254
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.84 E-value=0.00033 Score=55.61 Aligned_cols=104 Identities=25% Similarity=0.271 Sum_probs=70.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc---------------------------C-
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA---------------------------P- 120 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---------------------------~- 120 (215)
+.+||.-|||.|+++-.++.+ | -.+.|.|.|--|+-...-.++..... +
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~-G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL-G--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc-c--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 578999999999999999998 4 68999999998865544333210000 0
Q ss_pred ------cccCCCeEEEeCCCCCCCCCC---CCccEEEEccCCC------CchHHHHHhcCCCcEEEEEeCC
Q 028016 121 ------LLKEGSLSVHVGDGRKGWPEF---APYDAIHVGAAAP------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 121 ------~~~~~~v~~~~~d~~~~~~~~---~~~D~V~~~~~~~------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.-...++....+|+.+..... +.||+|+...-++ ++++.+.++||||| +++.++.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GP 203 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG-YWINFGP 203 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC-EEEecCC
Confidence 011246677777777655443 6899997665433 24467889999999 4555544
No 255
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.79 E-value=4.8e-05 Score=61.45 Aligned_cols=89 Identities=19% Similarity=0.218 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028016 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
+..++++.|. ..++..++|..-|.|+.+..+++.+++ ++++|+|.|+.+++.+++++.... +++.+++++
T Consensus 8 ll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~-------~r~~~~~~~ 77 (310)
T PF01795_consen 8 LLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD-------DRFIFIHGN 77 (310)
T ss_dssp THHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC-------TTEEEEES-
T ss_pred cHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc-------ceEEEEecc
Confidence 5788899987 788899999999999999999998755 999999999999999988776432 689999998
Q ss_pred CCCC------CCCCCCccEEEEccC
Q 028016 134 GRKG------WPEFAPYDAIHVGAA 152 (215)
Q Consensus 134 ~~~~------~~~~~~~D~V~~~~~ 152 (215)
+.+. ......+|.|+.+..
T Consensus 78 F~~l~~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 78 FSNLDEYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp GGGHHHHHHHTTTTS-EEEEEEE-S
T ss_pred HHHHHHHHHHccCCCccCEEEEccc
Confidence 7752 112257999987753
No 256
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=7.5e-05 Score=55.38 Aligned_cols=96 Identities=21% Similarity=0.231 Sum_probs=65.2
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCCCC-----
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGW----- 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~----- 138 (215)
.++|+.+|||+||..|+.+..+.++.+|++.|.|+|+-.- .+.+.+.++.+ |+.+..
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------------~p~~Ga~~i~~~dvtdp~~~~ki 128 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------------EPPEGATIIQGNDVTDPETYRKI 128 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------------cCCCCcccccccccCCHHHHHHH
Confidence 3688999999999999999999999889999999997432 11134455554 444311
Q ss_pred ---CCCCCccEEEEccCCC--------C--chH-------HHHHhcCCCcEEEEEeCCC
Q 028016 139 ---PEFAPYDAIHVGAAAP--------E--IPQ-------ALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 139 ---~~~~~~D~V~~~~~~~--------~--~~~-------~~~~~Lk~gG~lv~~~~~~ 177 (215)
.+....|+|+++.... | .++ -....++|+|.+++-+-.+
T Consensus 129 ~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 129 FEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred HHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 1225788888775321 1 111 2346789999999966543
No 257
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.77 E-value=8.6e-05 Score=57.55 Aligned_cols=87 Identities=23% Similarity=0.350 Sum_probs=51.6
Q ss_pred CCCC--CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcc---cCCCeEEEeCCCCCCCC-
Q 028016 66 LKPG--MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL---KEGSLSVHVGDGRKGWP- 139 (215)
Q Consensus 66 ~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~---~~~~v~~~~~d~~~~~~- 139 (215)
++++ .+|||..+|-|..+..++.. | .+|+++|.|+-.....+.-+......... -..+++++.+|..+.+.
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~ 147 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ 147 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC
T ss_pred CCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh
Confidence 4555 48999999999999999876 5 68999999998777666555443222111 01488999999887654
Q ss_pred CCCCccEEEEccCCCC
Q 028016 140 EFAPYDAIHVGAAAPE 155 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~ 155 (215)
...+||+|++++.+++
T Consensus 148 ~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 148 PDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HSS--SEEEE--S---
T ss_pred cCCCCCEEEECCCCCC
Confidence 2378999999998854
No 258
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.76 E-value=0.00048 Score=59.69 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=87.2
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCC---CCeEEEEecChHHHHHHHHHHHhhcccCcc
Q 028016 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLL 122 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 122 (215)
|.+.+...+...+.+.+. +.+..+|+|..||+|++.....+.++. +..++|.|+++.....|+.++--++..
T Consensus 166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~--- 240 (489)
T COG0286 166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE--- 240 (489)
T ss_pred CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC---
Confidence 556666666666666665 456779999999999988888777642 267999999999999999988776642
Q ss_pred cCCCeEEEeCCCCCCC-C----CCCCccEEEEccCCC-------------------------------CchHHHHHhcCC
Q 028016 123 KEGSLSVHVGDGRKGW-P----EFAPYDAIHVGAAAP-------------------------------EIPQALIDQLKP 166 (215)
Q Consensus 123 ~~~~v~~~~~d~~~~~-~----~~~~~D~V~~~~~~~-------------------------------~~~~~~~~~Lk~ 166 (215)
. ++....+|..... . ....||.|++++++. .+...+...|+|
T Consensus 241 -~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~ 318 (489)
T COG0286 241 -G-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP 318 (489)
T ss_pred -c-cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC
Confidence 1 4555666544332 2 225699999888652 011246788999
Q ss_pred CcEEEEEeCCC
Q 028016 167 GGRMVIPVGNI 177 (215)
Q Consensus 167 gG~lv~~~~~~ 177 (215)
||+..+.++++
T Consensus 319 ~g~aaivl~~g 329 (489)
T COG0286 319 GGRAAIVLPDG 329 (489)
T ss_pred CceEEEEecCC
Confidence 88777666654
No 259
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.73 E-value=4.1e-05 Score=60.40 Aligned_cols=94 Identities=23% Similarity=0.294 Sum_probs=70.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
...+..++|+|||.|-.... .|..-++++|++...+..+++. ....+..+|+...+....+||
T Consensus 43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~------------~~~~~~~ad~l~~p~~~~s~d 105 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS------------GGDNVCRADALKLPFREESFD 105 (293)
T ss_pred cCCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC------------CCceeehhhhhcCCCCCCccc
Confidence 34488999999999954311 1335799999999888877641 122688889888777778999
Q ss_pred EEEEccCCCCch---------HHHHHhcCCCcEEEEEeCC
Q 028016 146 AIHVGAAAPEIP---------QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~~---------~~~~~~Lk~gG~lv~~~~~ 176 (215)
.++.....+++. +++.+.|+|||..++.+..
T Consensus 106 ~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 106 AALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 999999988765 5678999999997776544
No 260
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.70 E-value=0.00056 Score=52.00 Aligned_cols=114 Identities=16% Similarity=0.231 Sum_probs=59.2
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHH---HhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCC
Q 028016 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFAL---MVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 126 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~ 126 (215)
..|.-+..+.+.+- .++| ..|+|+|.-.|+.+...|+ .++..++|+++|++-..... +.++..... ++
T Consensus 16 q~P~Dm~~~qeli~-~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~-----~r 86 (206)
T PF04989_consen 16 QYPQDMVAYQELIW-ELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMS-----PR 86 (206)
T ss_dssp S-HHHHHHHHHHHH-HH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG---------TT
T ss_pred cCHHHHHHHHHHHH-HhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcccc-----Cc
Confidence 45555555555554 3554 7999999999988887765 33566899999996544322 122222222 69
Q ss_pred eEEEeCCCCCCC--------CCCCCccEEEEccCC--CCch---HHHHHhcCCCcEEEE
Q 028016 127 LSVHVGDGRKGW--------PEFAPYDAIHVGAAA--PEIP---QALIDQLKPGGRMVI 172 (215)
Q Consensus 127 v~~~~~d~~~~~--------~~~~~~D~V~~~~~~--~~~~---~~~~~~Lk~gG~lv~ 172 (215)
++++++|..+.. .......+|+.++.- .++. +....++++|+++++
T Consensus 87 I~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 87 ITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp EEEEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEE
T ss_pred eEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEE
Confidence 999999976521 111234456655542 3444 456789999999998
No 261
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.64 E-value=0.00017 Score=60.23 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
..+.++||.=+|+|.-++..++.+....+|++-|+|+.+++.+++|+..+++. .+.+++...|+..... ....||
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~----~~~~~v~~~DAn~ll~~~~~~fD 123 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE----DERIEVSNMDANVLLYSRQERFD 123 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S----GCCEEEEES-HHHHHCHSTT-EE
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc----CceEEEehhhHHHHhhhccccCC
Confidence 34568999999999999999888544479999999999999999999887764 1268888888765442 337899
Q ss_pred EEEEccC-C-CCchHHHHHhcCCCcEEEEEeCC
Q 028016 146 AIHVGAA-A-PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~-~-~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|=.++- . ..+++.+.+.++.||.|.++.-+
T Consensus 124 ~IDlDPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 124 VIDLDPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp EEEE--SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred EEEeCCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 9966642 2 24678999999999999997643
No 262
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.63 E-value=0.0014 Score=51.83 Aligned_cols=115 Identities=23% Similarity=0.235 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCCCC-CEEEEEcCCc--cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028016 54 MHATCLQLLEENLKPG-MHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~-~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
++.+....+. -..| ..+||||||- -...-.+++...|+.+|+-+|.++..+..++..+..... ....++
T Consensus 55 Fl~RaVr~la--~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~------g~t~~v 126 (267)
T PF04672_consen 55 FLRRAVRYLA--EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR------GRTAYV 126 (267)
T ss_dssp HHHHHHHHHH--CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT------SEEEEE
T ss_pred HHHHHHHHHH--HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC------ccEEEE
Confidence 4455555554 2213 5799999994 334445666667889999999999999999988765421 237899
Q ss_pred eCCCCCCC---C---CCCCcc-----EEEEccCCCCc---------hHHHHHhcCCCcEEEEEeCC
Q 028016 131 VGDGRKGW---P---EFAPYD-----AIHVGAAAPEI---------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 131 ~~d~~~~~---~---~~~~~D-----~V~~~~~~~~~---------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.+|+.+.. . ..+-+| .|+....++++ ...+...|.||.+|+++...
T Consensus 127 ~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 127 QADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp E--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred eCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 99988621 1 001222 34555555443 35688899999999998754
No 263
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00052 Score=52.98 Aligned_cols=107 Identities=26% Similarity=0.216 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE-EeCCC
Q 028016 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV-HVGDG 134 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~-~~~d~ 134 (215)
...++.+. ...++..+||+|+.||.++..+.+. |. .+|+++|..-..+.+--+ . . +++.. ...|+
T Consensus 68 ~~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~-gA-k~VyavDVG~~Ql~~kLR---~---d-----~rV~~~E~tN~ 133 (245)
T COG1189 68 EKALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQR-GA-KHVYAVDVGYGQLHWKLR---N---D-----PRVIVLERTNV 133 (245)
T ss_pred HHHHHhcC-cCCCCCEEEEecCCCccHHHHHHHc-CC-cEEEEEEccCCccCHhHh---c---C-----CcEEEEecCCh
Confidence 34455544 2355789999999999999999988 44 799999988766554321 1 1 34433 34455
Q ss_pred CCCCCC--CCCccEEEEccCCCC---chHHHHHhcCCCcEEEEEeCC
Q 028016 135 RKGWPE--FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~--~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
....+. .+..|+++++-++-. ++..+..+++++|.++..+-.
T Consensus 134 r~l~~~~~~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKP 180 (245)
T COG1189 134 RYLTPEDFTEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKP 180 (245)
T ss_pred hhCCHHHcccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecc
Confidence 443321 136789999887754 557788999999998886644
No 264
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.58 E-value=0.00034 Score=57.78 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=66.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
..++.+||-.|+|. |..+..+++..|. .+++++|.++..++.+++ .+... -+.....+..+.....+.+
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~----lGa~~-----vi~~~~~~~~~~~~~~g~~ 236 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLARE----MGADK-----LVNPQNDDLDHYKAEKGYF 236 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH----cCCcE-----EecCCcccHHHHhccCCCC
Confidence 45688999999986 8888888888753 479999999998888765 22210 0111111111111112459
Q ss_pred cEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 145 DAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
|+|+.........+.+.+.|++||.+++.
T Consensus 237 D~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 237 DVSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred CEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 99998877666678889999999999875
No 265
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.58 E-value=1e-05 Score=60.85 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=63.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
+.++||+|+|.|..+..++..+ .+|++.|.|..|....++. +..+.... +....+-+||+|.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk-------------~ynVl~~~--ew~~t~~k~dli~ 174 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK-------------NYNVLTEI--EWLQTDVKLDLIL 174 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc-------------CCceeeeh--hhhhcCceeehHH
Confidence 4789999999999999999887 7899999999998776542 22222211 1111224689997
Q ss_pred EccCCC------CchHHHHHhcCC-CcEEEEEe
Q 028016 149 VGAAAP------EIPQALIDQLKP-GGRMVIPV 174 (215)
Q Consensus 149 ~~~~~~------~~~~~~~~~Lk~-gG~lv~~~ 174 (215)
|-..++ .+++.++.+|+| +|..+++.
T Consensus 175 clNlLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 175 CLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 765543 356789999999 89888754
No 266
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.56 E-value=0.00013 Score=57.52 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=66.8
Q ss_pred HHHHHHhcCCCCCEEEEEcCCccHHHH-HHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCc---------cc----
Q 028016 58 CLQLLEENLKPGMHALDIGSGTGYLTA-CFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL---------LK---- 123 (215)
Q Consensus 58 ~l~~l~~~~~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~---------~~---- 123 (215)
+.+.+.....++.++||+|||+-.... .+++.+ ..+++.|..+...+..++.++..+.... +.
T Consensus 46 l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~ 122 (256)
T PF01234_consen 46 LHETFSSGGVKGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKRE 122 (256)
T ss_dssp HHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSS
T ss_pred HHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcc
Confidence 333344333457799999999854322 223333 6899999999988877777654311000 00
Q ss_pred ---------CCCe-EEEeCCCCCCCCCC------CCccEEEEccCCC----------CchHHHHHhcCCCcEEEEEe
Q 028016 124 ---------EGSL-SVHVGDGRKGWPEF------APYDAIHVGAAAP----------EIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 124 ---------~~~v-~~~~~d~~~~~~~~------~~~D~V~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~ 174 (215)
...+ .++..|+.+..+-. .+||+|++...++ ...+++.++|||||.|++..
T Consensus 123 ~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 123 KWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp GHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 1223 46678887644321 2499998877553 23357889999999999853
No 267
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.51 E-value=0.00069 Score=55.17 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=70.1
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEE
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 149 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~ 149 (215)
...+|+|.|.|..+..+...+ ..+-+++.+...+..++..+. +.++.+.+|..+..|. -|+|+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~~----------~gV~~v~gdmfq~~P~---~daI~m 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYLA----------PGVEHVAGDMFQDTPK---GDAIWM 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhhc----------CCcceecccccccCCC---cCeEEE
Confidence 689999999999999998875 468899998888777766543 2477788888776554 468877
Q ss_pred ccCCCC--------chHHHHHhcCCCcEEEEEeC
Q 028016 150 GAAAPE--------IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 150 ~~~~~~--------~~~~~~~~Lk~gG~lv~~~~ 175 (215)
--.+++ +++++.+.|+|||.+++.-+
T Consensus 243 kWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 243 KWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred EeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 766655 45688999999999998543
No 268
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.0024 Score=54.26 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=76.3
Q ss_pred cCCCCC-EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028016 65 NLKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
++.+.. ++|.+|||.-.++..+-+- |. ..++.+|.|+..++........ ...-..+...|......++++
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~-G~-~dI~~iD~S~V~V~~m~~~~~~-------~~~~~~~~~~d~~~l~fedES 114 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKN-GF-EDITNIDSSSVVVAAMQVRNAK-------ERPEMQMVEMDMDQLVFEDES 114 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhc-CC-CCceeccccHHHHHHHHhcccc-------CCcceEEEEecchhccCCCcc
Confidence 355555 9999999999999888876 33 7899999999998877654321 225678888888877777789
Q ss_pred ccEEEEccCCCCch----------------HHHHHhcCCCcEEEEE
Q 028016 144 YDAIHVGAAAPEIP----------------QALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~----------------~~~~~~Lk~gG~lv~~ 173 (215)
||+|+.-+.++++. .+++++|++||+.+..
T Consensus 115 FdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 115 FDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred eeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 99998777664433 4678999999986653
No 269
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.43 E-value=0.00046 Score=55.95 Aligned_cols=81 Identities=25% Similarity=0.207 Sum_probs=62.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHH-------HHHHHHHhhcccCcccCCCeEEEeCCCCCC-
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVV-------SSIQNIEKSAAAPLLKEGSLSVHVGDGRKG- 137 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~-------~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~- 137 (215)
+++|+.|.|-..|||++....+.. | +-|+|.|++-.++. ..+.|+++.+.. ..-+++..+|....
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~F-G--a~viGtDIDyr~vragrg~~~si~aNFkQYg~~----~~fldvl~~D~sn~~ 278 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHF-G--AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS----SQFLDVLTADFSNPP 278 (421)
T ss_pred cCCCCEEecCccccCceeeehhhh-c--ceeeccccchheeecccCCCcchhHhHHHhCCc----chhhheeeecccCcc
Confidence 788999999999999999888876 4 78999999988766 345677776633 24567888888764
Q ss_pred CCCCCCccEEEEccCC
Q 028016 138 WPEFAPYDAIHVGAAA 153 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~ 153 (215)
+-....||.|+|+++.
T Consensus 279 ~rsn~~fDaIvcDPPY 294 (421)
T KOG2671|consen 279 LRSNLKFDAIVCDPPY 294 (421)
T ss_pred hhhcceeeEEEeCCCc
Confidence 3334689999999864
No 270
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.39 E-value=0.0028 Score=55.03 Aligned_cols=96 Identities=23% Similarity=0.332 Sum_probs=66.0
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC--C---------
Q 028016 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD--G--------- 134 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d--~--------- 134 (215)
.++.+|+-+|+|. |..++..++.+|. +|+++|.++..++.+++ + +. ..+.+...+ .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aes-l---GA------~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVES-M---GA------EFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH-c---CC------eEEEeccccccccccchhhhc
Confidence 4689999999998 8899999998874 79999999999888875 2 21 111110000 0
Q ss_pred CCC--------CCC-CCCccEEEEccCCC-----Cc-hHHHHHhcCCCcEEEEEe
Q 028016 135 RKG--------WPE-FAPYDAIHVGAAAP-----EI-PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~--------~~~-~~~~D~V~~~~~~~-----~~-~~~~~~~Lk~gG~lv~~~ 174 (215)
... +.. ...+|+|+.....+ .+ .++..+.+||||+++...
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 000 000 13599999887653 35 488999999999988754
No 271
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.39 E-value=0.0004 Score=49.56 Aligned_cols=74 Identities=20% Similarity=0.317 Sum_probs=52.6
Q ss_pred eEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCCCCccEEEEccCC-----CC----------c
Q 028016 95 RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEFAPYDAIHVGAAA-----PE----------I 156 (215)
Q Consensus 95 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~~D~V~~~~~~-----~~----------~ 156 (215)
+|+++|+.+.+++.+++++.+.+.. .+++++...-.. ..+. +++|+++.+... +. .
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-----~~v~li~~sHe~l~~~i~~-~~v~~~iFNLGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-----DRVTLILDSHENLDEYIPE-GPVDAAIFNLGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-----SGEEEEES-GGGGGGT--S---EEEEEEEESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-----CcEEEEECCHHHHHhhCcc-CCcCEEEEECCcCCCCCCCCCcCcHHHHHH
Confidence 5899999999999999999987765 578888876443 2333 589999887643 11 2
Q ss_pred hHHHHHhcCCCcEEEEEe
Q 028016 157 PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 157 ~~~~~~~Lk~gG~lv~~~ 174 (215)
++.+.++|+|||.+.+.+
T Consensus 75 l~~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHhhccCCEEEEEE
Confidence 257889999999999865
No 272
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.34 E-value=0.00075 Score=53.67 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=81.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCCCccE
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~D~ 146 (215)
.++||.+|-|.|......+++ ..-..+..+|++...++..++.+...... +..+++.+..+|...... ..++||+
T Consensus 122 pkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~g--y~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACG--YEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcc--cCCCceEEEeccHHHHHHHhccCCceE
Confidence 478999999999988888776 34478999999999999999998776543 556789999998765432 2479999
Q ss_pred EEEccCCCC----------chHHHHHhcCCCcEEEEEeCC
Q 028016 147 IHVGAAAPE----------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 147 V~~~~~~~~----------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+.+.+-+- +...+.+.||++|++++...+
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 988765433 234678999999999986544
No 273
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=8.7e-05 Score=53.76 Aligned_cols=106 Identities=18% Similarity=0.119 Sum_probs=70.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC--CCCCCCcc
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFAPYD 145 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~D 145 (215)
+.+|||+|.|. |..++.+|... +...|...|.++..++-.++....+... ...+..+..-+.... .....+||
T Consensus 30 g~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s---~~tsc~vlrw~~~~aqsq~eq~tFD 105 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMAS---SLTSCCVLRWLIWGAQSQQEQHTFD 105 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhccccc---ccceehhhHHHHhhhHHHHhhCccc
Confidence 67899999996 66666677664 5589999999999998887766554221 112222222121111 11225899
Q ss_pred EEEEccCC------CCchHHHHHhcCCCcEEEEEeCCCc
Q 028016 146 AIHVGAAA------PEIPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 146 ~V~~~~~~------~~~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
.|++..-. ..+.+.+..+|+|.|.-++..|..-
T Consensus 106 iIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 106 IILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred EEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 99887643 2355678899999999888777643
No 274
>PRK11524 putative methyltransferase; Provisional
Probab=97.32 E-value=0.0011 Score=53.47 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh
Q 028016 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 115 (215)
+..+++... ..+|+.|||..+|+|..+.+..+. + .+++|+|++++.++.|++++..
T Consensus 197 L~erlI~~~---S~~GD~VLDPF~GSGTT~~AA~~l-g--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILAS---SNPGDIVLDPFAGSFTTGAVAKAS-G--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHc-C--CCEEEEeCCHHHHHHHHHHHHh
Confidence 344444443 678999999999999988877766 3 8999999999999999999864
No 275
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.29 E-value=0.0011 Score=55.58 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=49.2
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
..|||||+|||.++..+++.+ . ..++++|.-..|.+.|++....++.. ++++++..-.
T Consensus 68 v~vLdigtGTGLLSmMAvrag-a-D~vtA~EvfkPM~d~arkI~~kng~S-----dkI~vInkrS 125 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-A-DSVTACEVFKPMVDLARKIMHKNGMS-----DKINVINKRS 125 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-C-CeEEeehhhchHHHHHHHHHhcCCCc-----cceeeecccc
Confidence 468999999999999999884 4 46999999999999999999888876 6777776443
No 276
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=97.27 E-value=0.0019 Score=53.60 Aligned_cols=95 Identities=16% Similarity=0.134 Sum_probs=63.4
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEec---ChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEH---IPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~---s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (215)
..++.+||-+|+|. |.++..+++..| .++++++. ++...+.+++ .+. ..+.....+..+ ....
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~----~Ga------~~v~~~~~~~~~-~~~~ 236 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE----LGA------TYVNSSKTPVAE-VKLV 236 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH----cCC------EEecCCccchhh-hhhc
Confidence 35788999999987 888888998875 47999987 5666666543 221 111111111111 1112
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+.+|+|+.............+.|+++|.+++.
T Consensus 237 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 237 GEFDLIIEATGVPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred CCCCEEEECcCCHHHHHHHHHHccCCcEEEEE
Confidence 46999998887666778889999999998764
No 277
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.21 E-value=0.0015 Score=50.37 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 028016 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 111 (215)
++.+++... ..++..|||..||+|..+.++.+. + .+.+|+|+++..++.|++
T Consensus 180 l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l-~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEEL-G--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHT-T---EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhh---hccceeeehhhhccChHHHHHHHc-C--CeEEEEeCCHHHHHHhcC
Confidence 455555554 678999999999999988887766 3 789999999999998864
No 278
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=97.15 E-value=0.0038 Score=51.59 Aligned_cols=90 Identities=19% Similarity=0.138 Sum_probs=61.4
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHH-hCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALM-VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
.+++.+||-+|||. |.++..++++ .+. .+++++|.++..++.+++ + + .. ....+ ......
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~-~~vi~~~~~~~k~~~a~~-~---~--------~~-~~~~~----~~~~~g 222 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPE-SKLVVFGKHQEKLDLFSF-A---D--------ET-YLIDD----IPEDLA 222 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCC-CcEEEEeCcHhHHHHHhh-c---C--------ce-eehhh----hhhccC
Confidence 46789999999987 7777777775 333 579999999988887754 1 1 11 10011 111125
Q ss_pred ccEEEEccC---CCCchHHHHHhcCCCcEEEEE
Q 028016 144 YDAIHVGAA---APEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~---~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+|+.... ....++...++|+++|++++.
T Consensus 223 ~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 223 VDHAFECVGGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CcEEEECCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence 899987665 344667889999999999864
No 279
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.09 E-value=0.00093 Score=50.78 Aligned_cols=105 Identities=12% Similarity=0.067 Sum_probs=60.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHhh-------------------cc---------
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKS-------------------AA--------- 118 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~-------------------~~--------- 118 (215)
..-++.|-+||+|++...+.-..+.. ..|++.|+++.+++.|++|+.-. +.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 34689999999999888775443322 68999999999999999988421 00
Q ss_pred --------cCcccCCCeEEEeCCCCCCC-----CCCCCccEEEEccCC---------------CCchHHHHHhcCCCcEE
Q 028016 119 --------APLLKEGSLSVHVGDGRKGW-----PEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRM 170 (215)
Q Consensus 119 --------~~~~~~~~v~~~~~d~~~~~-----~~~~~~D~V~~~~~~---------------~~~~~~~~~~Lk~gG~l 170 (215)
...-......+.++|+.+.. ......|+|+.+-+. ..+++.+...|-.++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 00012345677888887621 122346999988765 23456788899555666
Q ss_pred EE
Q 028016 171 VI 172 (215)
Q Consensus 171 v~ 172 (215)
++
T Consensus 211 ~v 212 (246)
T PF11599_consen 211 AV 212 (246)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 280
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0007 Score=57.35 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~ 141 (215)
..++.+|||.-|++|.-++..++.++.-.++++.|.++..++..+++.+-++.+ +.++....|+.... ...
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-----~ive~~~~DA~~lM~~~~~~~ 181 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-----DIVEPHHSDANVLMYEHPMVA 181 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-----hhcccccchHHHHHHhccccc
Confidence 456789999999999999999998865589999999999999999998877654 55666667765321 122
Q ss_pred CCccEEEEcc--CCCCchHHHHHhcCCCcEEEEEeCC
Q 028016 142 APYDAIHVGA--AAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 142 ~~~D~V~~~~--~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
..||+|-.++ ....+++.+.+.++.||.|++++-+
T Consensus 182 ~~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 182 KFFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred cccceEecCCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 6799997775 3456789999999999999997644
No 281
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0038 Score=51.30 Aligned_cols=102 Identities=19% Similarity=0.224 Sum_probs=78.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCccEE
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~V 147 (215)
..+|+|.-||||.-++.++...+. .+++.-|+++.+++.+++|+.-+.. .+..++..|+...... ...||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~------~~~~v~n~DAN~lm~~~~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSG------EDAEVINKDANALLHELHRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCc------ccceeecchHHHHHHhcCCCccEE
Confidence 579999999999999999888654 4899999999999999999987622 3556666666543332 3689999
Q ss_pred EEcc--CCCCchHHHHHhcCCCcEEEEEeCCC
Q 028016 148 HVGA--AAPEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 148 ~~~~--~~~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
=.++ +..-+++.+.+.++.||.|.++.-+.
T Consensus 126 DiDPFGSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 126 DIDPFGSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred ecCCCCCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 6554 22346788899999999999976443
No 282
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.98 E-value=0.004 Score=50.66 Aligned_cols=87 Identities=25% Similarity=0.308 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
.++.+||-+|||. |.++..+++..|. ..++++|.++..++.+... . .+ +..+. ....+|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~~----~--------~i-----~~~~~--~~~g~D 202 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGATGY----E--------VL-----DPEKD--PRRDYR 202 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhhc----c--------cc-----Chhhc--cCCCCC
Confidence 3567899999987 8888889988764 4577888888776655421 0 01 00000 124699
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 146 AIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+.........+.+.+.|+++|++++.
T Consensus 203 vvid~~G~~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 203 AIYDASGDPSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred EEEECCCCHHHHHHHHHhhhcCcEEEEE
Confidence 9998887777778889999999999864
No 283
>PHA01634 hypothetical protein
Probab=96.95 E-value=0.0082 Score=41.92 Aligned_cols=47 Identities=17% Similarity=0.026 Sum_probs=40.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
.+.+|+|+|++.|..++.++-. |. ..|+++|.++...+..+++++.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GA-K~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GA-SFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-Cc-cEEEEeccCHHHHHHHHHHhhhh
Confidence 3689999999999999999876 44 79999999999999998877653
No 284
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.91 E-value=0.0031 Score=48.17 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=55.4
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-C--CCCCccE
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-P--EFAPYDA 146 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~~~D~ 146 (215)
.++||+||=+......-... -.|+.||+++. ...+.+.|+.+.+ + +.+.||+
T Consensus 53 lrlLEVGals~~N~~s~~~~----fdvt~IDLns~---------------------~~~I~qqDFm~rplp~~~~e~Fdv 107 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ---------------------HPGILQQDFMERPLPKNESEKFDV 107 (219)
T ss_pred ceEEeecccCCCCcccccCc----eeeEEeecCCC---------------------CCCceeeccccCCCCCCcccceeE
Confidence 68999999755433322222 46999998762 2345556665532 2 3478999
Q ss_pred EEEccCCCCch---------HHHHHhcCCCcE-----EEEEeCC
Q 028016 147 IHVGAAAPEIP---------QALIDQLKPGGR-----MVIPVGN 176 (215)
Q Consensus 147 V~~~~~~~~~~---------~~~~~~Lk~gG~-----lv~~~~~ 176 (215)
|.++..+..++ ..+.+.|+|+|. |++.+|.
T Consensus 108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 98888775444 578899999999 7776654
No 285
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.0069 Score=43.44 Aligned_cols=109 Identities=28% Similarity=0.221 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
++.+++.+. ..+..+.+|+|+|.|......++. |. ...+|+|.++-.+.+++-..-..+.. ....|..-|.
T Consensus 61 v~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~-g~-~~a~GvELNpwLVaysrl~a~R~g~~-----k~trf~Rkdl 131 (199)
T KOG4058|consen 61 VENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARC-GL-RPAVGVELNPWLVAYSRLHAWRAGCA-----KSTRFRRKDL 131 (199)
T ss_pred HHHHHHHcc--CCCCCcEEeccCCCceeehhhhhh-CC-CcCCceeccHHHHHHHHHHHHHHhcc-----cchhhhhhhh
Confidence 455566665 456678999999999999888876 43 57899999999888876554444433 4555666565
Q ss_pred CCCCCCCCCccEEEEcc-CCCCchHHHHHhcCCCcEEEE
Q 028016 135 RKGWPEFAPYDAIHVGA-AAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~-~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
......+-.+-+|+... .++.+.+.+...+..+..++.
T Consensus 132 wK~dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 132 WKVDLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred hhccccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 44322212223333332 345566777778888887774
No 286
>PRK13699 putative methylase; Provisional
Probab=96.88 E-value=0.0061 Score=47.51 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=42.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
..+++.|||..||+|....+..+. + .+++|+|+++...+.+.+++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~-~--r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS-G--RRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc-C--CCEEEEecCHHHHHHHHHHHHHH
Confidence 678899999999999988877766 3 78999999999999999988663
No 287
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.85 E-value=0.0063 Score=48.76 Aligned_cols=99 Identities=21% Similarity=0.236 Sum_probs=64.8
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CCCCCCCCCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~ 143 (215)
..++.+||-+|+|. |..+..+++..|. .+++++|.++...+.+++ .+... -+.... .+..........
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~----~Ga~~-----~i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALS----FGATA-----LAEPEVLAERQGGLQNGRG 187 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCCcE-----ecCchhhHHHHHHHhCCCC
Confidence 45788999999986 8888888888753 358899999888777754 22210 000000 000000112246
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028016 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+|+.........+.+.+.|+++|.+++.-
T Consensus 188 ~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 188 VDVALEFSGATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCEEEECCCChHHHHHHHHHhcCCCEEEEec
Confidence 9999987766667788899999999998743
No 288
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.85 E-value=0.014 Score=48.50 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=65.4
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
.++++.+||-.|+|. |..+..+++..|. .+++++|.++...+.+++ .+.. .-+.....+... ....
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~----~Ga~-----~~i~~~~~~~~~~i~~~~~ 242 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWARE----FGAT-----HTVNSSGTDPVEAIRALTG 242 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCCc-----eEEcCCCcCHHHHHHHHhC
Confidence 367889999999876 7888888888753 359999999988888754 2211 001111111111 0112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+|+|+.............+.+++||.+++.
T Consensus 243 ~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 243 GFGADVVIDAVGRPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 236899997766556677788999999999874
No 289
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=96.82 E-value=0.018 Score=47.34 Aligned_cols=91 Identities=24% Similarity=0.186 Sum_probs=62.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
..+++.+||-.|+|. |..+..+++..| .++++++.++...+.+++ .+.. .+ +.. .+. ..+.
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~----~Ga~------~v--i~~--~~~--~~~~ 223 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALA----LGAA------SA--GGA--YDT--PPEP 223 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH----hCCc------ee--ccc--ccc--Cccc
Confidence 367889999999875 777778888765 469999999888777754 2321 11 110 011 1145
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+++.............+.|++||++++.
T Consensus 224 ~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 224 LDAAILFAPAGGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred ceEEEECCCcHHHHHHHHHhhCCCcEEEEE
Confidence 887765554455677888999999999774
No 290
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.71 E-value=0.026 Score=47.42 Aligned_cols=100 Identities=19% Similarity=0.280 Sum_probs=65.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC-CCC---CCC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-GRK---GWP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d-~~~---~~~ 139 (215)
.+.++.+||..|||. |..+..+++..|. .++++++.++...+.+++.... ..+.....+ ... ...
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~~~---------~vi~~~~~~~~~~~l~~~~ 250 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHLGA---------ETINFEEVDDVVEALRELT 250 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCCc---------EEEcCCcchHHHHHHHHHc
Confidence 367788999999998 8899999998753 4699999999988887764211 111111111 110 111
Q ss_pred CCCCccEEEEccCC---------------------CCchHHHHHhcCCCcEEEEEe
Q 028016 140 EFAPYDAIHVGAAA---------------------PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 140 ~~~~~D~V~~~~~~---------------------~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
....+|+|+..... ....+.+.+.++++|.++...
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 22369999875432 224577889999999998853
No 291
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.71 E-value=0.0095 Score=50.43 Aligned_cols=88 Identities=18% Similarity=0.116 Sum_probs=62.7
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.-++.+|+-+|+|. |......++.+| .+|+.+|.++...+.|++ .+ +.... ..+.. ..+
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~----~G---------~~~~~--~~e~v---~~a 258 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAM----EG---------YEVMT--MEEAV---KEG 258 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHh----cC---------CEEcc--HHHHH---cCC
Confidence 35689999999998 888888888766 479999999988777754 12 11111 11111 357
Q ss_pred cEEEEccCCCCchHH-HHHhcCCCcEEEEE
Q 028016 145 DAIHVGAAAPEIPQA-LIDQLKPGGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~~~~~-~~~~Lk~gG~lv~~ 173 (215)
|+|+........+.. ....+|+||+++..
T Consensus 259 DVVI~atG~~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 259 DIFVTTTGNKDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred CEEEECCCCHHHHHHHHHhcCCCCcEEEEe
Confidence 999988777666654 58999999998764
No 292
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=96.69 E-value=0.015 Score=48.61 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=65.1
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
++++.+||-.|+|. |..+..+++..|. .+|+++|.++...+.+++ .+.. .-+.....+..+ ....
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~~----~Ga~-----~~i~~~~~~~~~~i~~~~~- 257 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGA-SQVVAVDLNEDKLALARE----LGAT-----ATVNAGDPNAVEQVRELTG- 257 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH----cCCc-----eEeCCCchhHHHHHHHHhC-
Confidence 67788999999886 7888888888653 369999999998887754 2211 001111111111 0112
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+.+|+|+.........+...+.|+++|.+++.
T Consensus 258 ~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 258 GGVDYAFEMAGSVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred CCCCEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence 36899998766666777889999999998864
No 293
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.69 E-value=0.018 Score=44.51 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhc----CCCCCEEEEEcCCccHHHHHHH-HHhCCCCeEEEEecChHHHHHHHHHHHhh-cccCcccCCCe
Q 028016 54 MHATCLQLLEEN----LKPGMHALDIGSGTGYLTACFA-LMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSL 127 (215)
Q Consensus 54 ~~~~~l~~l~~~----~~~~~~vLdiG~G~G~~~~~l~-~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~v 127 (215)
....+.++|..- ..+..++||||.|--..--.+- ..+| -+.+|.|+|+.+++.|+..+..+ ++. ..+
T Consensus 60 Yih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYg--wrfvGseid~~sl~sA~~ii~~N~~l~-----~~I 132 (292)
T COG3129 60 YIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYG--WRFVGSEIDSQSLSSAKAIISANPGLE-----RAI 132 (292)
T ss_pred HHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeec--ceeecCccCHHHHHHHHHHHHcCcchh-----hhe
Confidence 345555555421 2345689999998654332221 1222 58999999999999999998876 332 345
Q ss_pred EEEeCCCCCC-----CCCCCCccEEEEccCCCCchHHH
Q 028016 128 SVHVGDGRKG-----WPEFAPYDAIHVGAAAPEIPQAL 160 (215)
Q Consensus 128 ~~~~~d~~~~-----~~~~~~~D~V~~~~~~~~~~~~~ 160 (215)
++....-... .-..+.||.+.|+++++.-.+++
T Consensus 133 ~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~~da 170 (292)
T COG3129 133 RLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSAADA 170 (292)
T ss_pred eEEeccCccccccccccccceeeeEecCCCcchhHHHH
Confidence 5554332221 12247899999999998766544
No 294
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.65 E-value=0.0047 Score=43.32 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=61.4
Q ss_pred CccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------CCCCCCCccEEEEcc
Q 028016 78 GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------GWPEFAPYDAIHVGA 151 (215)
Q Consensus 78 G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~D~V~~~~ 151 (215)
|.|..+..+++..| .+++++|.++...+.+++. +.. .++..+-.+ .......+|+|+...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~----Ga~--------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~ 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL----GAD--------HVIDYSDDDFVEQIRELTGGRGVDVVIDCV 66 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT----TES--------EEEETTTSSHHHHHHHHTTTSSEEEEEESS
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh----ccc--------ccccccccccccccccccccccceEEEEec
Confidence 46888999999987 8999999999998888652 211 122221111 111224799999988
Q ss_pred CCCCchHHHHHhcCCCcEEEEEeCC
Q 028016 152 AAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 152 ~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
......+...++|+++|.+++....
T Consensus 67 g~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 67 GSGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp SSHHHHHHHHHHEEEEEEEEEESST
T ss_pred CcHHHHHHHHHHhccCCEEEEEEcc
Confidence 8778889999999999999986544
No 295
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=96.65 E-value=0.0084 Score=49.27 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=63.7
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC--CCCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~ 142 (215)
..++.+||-+|+|. |..+..+++..|. .++++++.++...+.+++ + +.. .-++....+... ......
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~-~~vi~~~~~~~~~~~~~~-~---ga~-----~~i~~~~~~~~~~~~~~~~~ 230 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGA-EDVIGVDPSPERLELAKA-L---GAD-----FVINSGQDDVQEIRELTSGA 230 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH-h---CCC-----EEEcCCcchHHHHHHHhCCC
Confidence 57789999999876 7778888888763 349999999888777643 2 211 001110111000 011224
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+|+|+.............+.|+++|.+++.
T Consensus 231 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 231 GADVAIECSGNTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 6999998766665667778999999999864
No 296
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.62 E-value=0.0088 Score=48.01 Aligned_cols=70 Identities=16% Similarity=0.067 Sum_probs=51.6
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC--CCCccEEE
Q 028016 71 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIH 148 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~V~ 148 (215)
+++|+.||.|.++..+... |. ..+.++|+++.+++..+.++.. .+..+|+.+.... ...+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~-~~v~a~e~~~~a~~~~~~N~~~------------~~~~~Di~~~~~~~~~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GF-EIVAANEIDKSAAETYEANFPN------------KLIEGDITKIDEKDFIPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CC-EEEEEEeCCHHHHHHHHHhCCC------------CCccCccccCchhhcCCCCCEEE
Confidence 6899999999999988876 43 5789999999998888776532 1344555443321 25799999
Q ss_pred EccCCC
Q 028016 149 VGAAAP 154 (215)
Q Consensus 149 ~~~~~~ 154 (215)
...+++
T Consensus 68 ~gpPCq 73 (275)
T cd00315 68 GGFPCQ 73 (275)
T ss_pred eCCCCh
Confidence 998774
No 297
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=96.48 E-value=0.074 Score=40.68 Aligned_cols=112 Identities=15% Similarity=0.191 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCcc----HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTG----YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G----~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
.++++..|+.... ...+++.+|+.| .+++..|.+ ...+++++|-.++......++.+...+.. +.++|+
T Consensus 29 ~aEfISAlAAG~n-AkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~~~~~-----~~vEfv 101 (218)
T PF07279_consen 29 VAEFISALAAGWN-AKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGEAGLS-----DVVEFV 101 (218)
T ss_pred HHHHHHHHhcccc-ceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhhcccc-----ccceEE
Confidence 6778888873222 346777765543 233333333 23489999999999888888888766553 567888
Q ss_pred eCCCC-CCCCCCCCccEEEEccCCCCchHHHHHhcC--CCcEEEEE
Q 028016 131 VGDGR-KGWPEFAPYDAIHVGAAAPEIPQALIDQLK--PGGRMVIP 173 (215)
Q Consensus 131 ~~d~~-~~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk--~gG~lv~~ 173 (215)
.++.. +..+.....|.++.+...+++..++.+.++ |.|-+++.
T Consensus 102 vg~~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~ 147 (218)
T PF07279_consen 102 VGEAPEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVVC 147 (218)
T ss_pred ecCCHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEEE
Confidence 88754 334444679999999988877756665544 45766554
No 298
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.41 E-value=0.039 Score=43.34 Aligned_cols=103 Identities=20% Similarity=0.212 Sum_probs=57.6
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC---CCCC-c
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFAP-Y 144 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~-~ 144 (215)
...||++|+|+|..++.++...+ .+|+..|..... ...+.+...+.....-....+.+..-++..... -.+. +
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLG--AEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhc--ceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 45799999999988888887654 678888865433 222222222111100000133333333332111 1133 8
Q ss_pred cEEEEccCC------CCchHHHHHhcCCCcEEEEEe
Q 028016 145 DAIHVGAAA------PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 145 D~V~~~~~~------~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
|+|++..+. +.+..-+..+|..+|.+++..
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 988776654 445567788888888555543
No 299
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=96.40 E-value=0.041 Score=44.88 Aligned_cols=96 Identities=23% Similarity=0.269 Sum_probs=63.8
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC-C--CCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR-K--GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~-~--~~~~~ 141 (215)
+.++.+||..|+|. |..+..+++..| .++++++.++...+.+++ .+. ..+-....... . .....
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~----~g~------~~~~~~~~~~~~~~~~~~~~ 230 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE----LGA------DEVLNSLDDSPKDKKAAGLG 230 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCC------CEEEcCCCcCHHHHHHHhcC
Confidence 56778999988874 888888888875 569999999988777643 221 11100000000 0 01122
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+.........+.+.+.|+++|.++..
T Consensus 231 ~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 231 GGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 57999987765556778889999999999875
No 300
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.36 E-value=0.032 Score=48.48 Aligned_cols=93 Identities=25% Similarity=0.361 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe---CCCCC-------
Q 028016 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV---GDGRK------- 136 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~---~d~~~------- 136 (215)
++.+|+-+|+|. |..+..+++.+| ..++++|.++..++.+++ + +. ..+.+.. ++...
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~-l---Ga------~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS-M---GA------EFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-c---CC------eEEeccccccccccccceeecC
Confidence 468999999998 888888888876 469999999998777764 2 11 1111110 00000
Q ss_pred -C--------CC-CCCCccEEEEcc-----CCCC-chHHHHHhcCCCcEEEE
Q 028016 137 -G--------WP-EFAPYDAIHVGA-----AAPE-IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 137 -~--------~~-~~~~~D~V~~~~-----~~~~-~~~~~~~~Lk~gG~lv~ 172 (215)
. .. ....+|+|+... ..+. +.++..+.+|||++++=
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 0 01 114699998777 2232 44778999999999873
No 301
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.008 Score=49.16 Aligned_cols=102 Identities=22% Similarity=0.158 Sum_probs=61.5
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCCCCccE
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFAPYDA 146 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~ 146 (215)
.++||+|.|.|.-..++-..+..-..++.+|.|+..-+......... ..........|+.... +..+.|++
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv------~t~~td~r~s~vt~dRl~lp~ad~ytl 188 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV------STEKTDWRASDVTEDRLSLPAADLYTL 188 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc------ccccCCCCCCccchhccCCCccceeeh
Confidence 57999999999776666555432367888888887655544332211 1122333334443322 22256776
Q ss_pred EEEccCC-----C----CchHHHHHhcCCCcEEEEEeCCC
Q 028016 147 IHVGAAA-----P----EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 147 V~~~~~~-----~----~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
++...-+ + ..++.++.++.|||.|++..++.
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 6554432 1 25577899999999999987654
No 302
>PLN02740 Alcohol dehydrogenase-like
Probab=96.32 E-value=0.011 Score=49.65 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=65.8
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC--CCCC---CC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~--d~~~---~~ 138 (215)
.++++.+||-+|+|. |..+..+++..|. .+|+++|.++...+.+++ .+.. .-++.... +..+ ..
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~----~Ga~-----~~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKE----MGIT-----DFINPKDSDKPVHERIREM 264 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHH----cCCc-----EEEecccccchHHHHHHHH
Confidence 367889999999987 8888888888753 369999999998888754 2211 01111100 0111 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028016 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
.. +.+|+|+...............+++| |.+++.
T Consensus 265 ~~-~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 265 TG-GGVDYSFECAGNVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred hC-CCCCEEEECCCChHHHHHHHHhhhcCCCEEEEE
Confidence 12 26999998877767778888899997 887663
No 303
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=96.26 E-value=0.061 Score=44.38 Aligned_cols=98 Identities=17% Similarity=0.223 Sum_probs=62.7
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC--CCCCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--KGWPEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~--~~~~~~~ 142 (215)
..++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ + +.. .-+.....+.. .......
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~---Ga~-----~~i~~~~~~~~~~~~~~~~~ 227 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDINSEKLALAKS-L---GAM-----QTFNSREMSAPQIQSVLREL 227 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH-c---CCc-----eEecCcccCHHHHHHHhcCC
Confidence 56788999999987 8888888888753 347899998888777643 2 211 00110000100 0011123
Q ss_pred Ccc-EEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 143 PYD-AIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 143 ~~D-~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+| +|+.............+.|++||.+++.
T Consensus 228 ~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 228 RFDQLILETAGVPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCCeEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 577 7776666556778889999999998875
No 304
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.042 Score=45.27 Aligned_cols=75 Identities=27% Similarity=0.371 Sum_probs=51.3
Q ss_pred ccccC-CcccchhHHHHH--------HHHHHHhcCCC-CCEEEEEcCCccHHHHHHHHHh---CC----CCeEEEEecCh
Q 028016 41 MAIGY-NATISAPHMHAT--------CLQLLEENLKP-GMHALDIGSGTGYLTACFALMV---GP----QGRAVGVEHIP 103 (215)
Q Consensus 41 ~~~~~-~~~~~~~~~~~~--------~l~~l~~~~~~-~~~vLdiG~G~G~~~~~l~~~~---~~----~~~v~~~D~s~ 103 (215)
.++|. |.+++.|.+... +++.+...-.| ...++|+|+|+|.++..+++.+ .| ..++..+|+|+
T Consensus 40 ~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 40 VKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred hhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 34443 446778775543 33344433333 4679999999999999887655 22 26899999999
Q ss_pred HHHHHHHHHHHh
Q 028016 104 ELVVSSIQNIEK 115 (215)
Q Consensus 104 ~~~~~a~~~~~~ 115 (215)
...+.=+++++.
T Consensus 120 ~L~~~Qk~~L~~ 131 (370)
T COG1565 120 ELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHHhc
Confidence 988877777655
No 305
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.20 E-value=0.014 Score=47.28 Aligned_cols=96 Identities=21% Similarity=0.210 Sum_probs=63.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe--CCCCCCCCCC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV--GDGRKGWPEF 141 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~--~d~~~~~~~~ 141 (215)
.+.||.+|--.|.|. |.++..+++++| .+|+++|.+...-+.+-+.+ +. +..-... .|......
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kkeea~~~L---GA------d~fv~~~~d~d~~~~~~-- 244 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKEEAIKSL---GA------DVFVDSTEDPDIMKAIM-- 244 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHHHHHHhc---Cc------ceeEEecCCHHHHHHHH--
Confidence 378999998888876 999999999987 79999999986655554443 22 1221111 11111111
Q ss_pred CCccEEEEccC--CCCchHHHHHhcCCCcEEEEE
Q 028016 142 APYDAIHVGAA--APEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~--~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+..|.++.... ..+-++.+..+||++|.+++.
T Consensus 245 ~~~dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 245 KTTDGGIDTVSNLAEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred HhhcCcceeeeeccccchHHHHHHhhcCCEEEEE
Confidence 34555443333 566778899999999999885
No 306
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.057 Score=43.64 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCC------CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHH
Q 028016 54 MHATCLQLLEENLKP------GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 106 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~------~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 106 (215)
....+++.|..+.++ ..+||.-|||.|+++..++.. |. +.-|-|.|--|+
T Consensus 130 ~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~-G~--~~qGNEfSy~Ml 185 (369)
T KOG2798|consen 130 LYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL-GF--KCQGNEFSYFML 185 (369)
T ss_pred hhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh-cc--cccccHHHHHHH
Confidence 345566666544433 568999999999999999988 44 344446665554
No 307
>PLN02827 Alcohol dehydrogenase-like
Probab=96.14 E-value=0.016 Score=48.59 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=64.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC--CCCC---CC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~--d~~~---~~ 138 (215)
.+.++.+||-.|+|. |..+..+++..|. ..++++|.++...+.+++ .+.. .-+..... +... ..
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a~~----lGa~-----~~i~~~~~~~~~~~~v~~~ 259 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKAKT----FGVT-----DFINPNDLSEPIQQVIKRM 259 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH----cCCc-----EEEcccccchHHHHHHHHH
Confidence 367789999999987 8888888888753 368899988888777743 2221 00111100 1100 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028016 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
.. +.+|+|+.............+.+++| |.+++.
T Consensus 260 ~~-~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 260 TG-GGADYSFECVGDTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred hC-CCCCEEEECCCChHHHHHHHHhhccCCCEEEEE
Confidence 12 36999998777665677889999998 999763
No 308
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=96.10 E-value=0.12 Score=43.72 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=64.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CCCCC---CCC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRK---GWP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d~~~---~~~ 139 (215)
.+.++.+||-.|+|. |..+..+++..|. ..++.+|.++..++.+++. +. ..+.... .+... ...
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga-~~vi~~d~~~~r~~~a~~~----Ga------~~v~~~~~~~~~~~v~~~~ 250 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGA-AVVIVGDLNPARLAQARSF----GC------ETVDLSKDATLPEQIEQIL 250 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHc----CC------eEEecCCcccHHHHHHHHc
Confidence 367788998899986 8888888888764 4566778888888877652 21 1111000 01111 011
Q ss_pred CCCCccEEEEccCCC--------------CchHHHHHhcCCCcEEEEE
Q 028016 140 EFAPYDAIHVGAAAP--------------EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~--------------~~~~~~~~~Lk~gG~lv~~ 173 (215)
....+|+|+.....+ ..++.+.+++++||.+++.
T Consensus 251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 224689998777654 3678889999999999884
No 309
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=96.05 E-value=0.028 Score=46.80 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=58.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
..++.+||-.|+|. |..+..+++..| .++++++.++.....+.+. .+...-+..... ...... . +.+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~~~---~Ga~~vi~~~~~----~~~~~~--~-~~~ 248 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAINR---LGADSFLVSTDP----EKMKAA--I-GTM 248 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHHHh---CCCcEEEcCCCH----HHHHhh--c-CCC
Confidence 45788999999987 888888898876 4688887776543322222 221100000000 001111 1 258
Q ss_pred cEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 145 DAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
|+|+.........+...+.|++||.++..
T Consensus 249 D~vid~~g~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 249 DYIIDTVSAVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CEEEECCCCHHHHHHHHHHhcCCcEEEEe
Confidence 99997766545667789999999998864
No 310
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.03 E-value=0.094 Score=43.37 Aligned_cols=98 Identities=20% Similarity=0.232 Sum_probs=62.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC---CCCC---C
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRK---G 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~---d~~~---~ 137 (215)
.+.++.+||-.|+|. |..+..+++..| .++++++.++..++.+++ + +.. .-+..... +..+ .
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~-~---Ga~-----~~i~~~~~~~~~~~~~~~~ 231 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG-F---GAD-----LTLNPKDKSAREVKKLIKA 231 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-h---CCc-----eEecCccccHHHHHHHHHh
Confidence 367789999999987 888888888875 479999999988887754 2 211 01111111 0000 0
Q ss_pred CCCCCCcc----EEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 138 WPEFAPYD----AIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D----~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+| +|+.........+.+.++|++||.+++.
T Consensus 232 ~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 232 FAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred hcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEE
Confidence 01112344 6776655555667788999999999874
No 311
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.96 E-value=0.005 Score=49.19 Aligned_cols=95 Identities=24% Similarity=0.312 Sum_probs=67.4
Q ss_pred CCCCEEEEEcCCccHHHH-HHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 67 KPGMHALDIGSGTGYLTA-CFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+..|.|+-+|-|+++. .+... |. ..|+++|.++..++..++++..+.+. ++..+..+|....-+. ...|
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~a-gA-k~V~A~EwNp~svEaLrR~~~~N~V~-----~r~~i~~gd~R~~~~~-~~Ad 264 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTA-GA-KTVFACEWNPWSVEALRRNAEANNVM-----DRCRITEGDNRNPKPR-LRAD 264 (351)
T ss_pred cccchhhhhhcccceEEeehhhcc-Cc-cEEEEEecCHHHHHHHHHHHHhcchH-----HHHHhhhccccccCcc-ccch
Confidence 445789999999999999 55554 44 78999999999999999998886554 4445556665544333 6778
Q ss_pred EEEEcc--CCCCchHHHHHhcCCCcE
Q 028016 146 AIHVGA--AAPEIPQALIDQLKPGGR 169 (215)
Q Consensus 146 ~V~~~~--~~~~~~~~~~~~Lk~gG~ 169 (215)
.|.... +.+.-...+.+.|||.|-
T Consensus 265 rVnLGLlPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 265 RVNLGLLPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred heeeccccccccchHHHHHHhhhcCC
Confidence 876543 233334556788888654
No 312
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=95.87 E-value=0.031 Score=46.55 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=62.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC--C---CCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG--R---KGWP 139 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~--~---~~~~ 139 (215)
+.++.+||-+|+|. |..+..+++..|. .+|++++.++...+.+++ + +.. .-+.....+. . ....
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~~~~-~---ga~-----~~i~~~~~~~~~~~~~~~~~ 251 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGA-SRIIGVDINEDKFEKAKE-F---GAT-----DFINPKDSDKPVSEVIREMT 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-c---CCC-----cEeccccccchHHHHHHHHh
Confidence 67789999999876 7777888888753 379999999888777753 2 211 0011110000 0 0111
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028016 140 EFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
. ..+|+|+.............+.++++ |.++..
T Consensus 252 ~-~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 252 G-GGVDYSFECTGNADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred C-CCCCEEEECCCChHHHHHHHHhcccCCCEEEEE
Confidence 2 46899997666555667788899885 988764
No 313
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.85 E-value=0.12 Score=42.65 Aligned_cols=98 Identities=22% Similarity=0.285 Sum_probs=63.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
++++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ .+.. .-+.....+... .....
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~~-----~~v~~~~~~~~~~i~~~~~~ 233 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGSRPNRVELAKE----YGAT-----DIVDYKNGDVVEQILKLTGG 233 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCCc-----eEecCCCCCHHHHHHHHhCC
Confidence 67788999999875 7788888888754 469999999887777654 2211 001110111100 01122
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+....-......+.+.|+++|.++..
T Consensus 234 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 234 KGVDAVIIAGGGQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCCcEEEECCCCHHHHHHHHHHhhcCCEEEEe
Confidence 46999997666555678889999999998853
No 314
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.83 E-value=0.094 Score=41.06 Aligned_cols=98 Identities=26% Similarity=0.332 Sum_probs=63.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC--CCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~ 142 (215)
..++.+||..|+|+ |.....+++..| .++++++.++...+.+++. +.. .-+.....+.... .....
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g~~-----~~~~~~~~~~~~~~~~~~~~ 200 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKEL----GAD-----HVIDYKEEDLEEELRLTGGG 200 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHh----CCc-----eeccCCcCCHHHHHHHhcCC
Confidence 36788999999996 777777787765 6899999998777666432 111 0011000000000 11225
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028016 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
.+|+++...........+.+.|+++|.++...
T Consensus 201 ~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 201 GADVVIDAVGGPETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCCEEEECCCCHHHHHHHHHhcccCCEEEEEc
Confidence 79999987665456777889999999998754
No 315
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=95.78 E-value=0.11 Score=42.49 Aligned_cols=102 Identities=19% Similarity=0.150 Sum_probs=71.6
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC--
Q 028016 57 TCLQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-- 133 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d-- 133 (215)
..+.... ++++.+|.-+|||. |..++.-++..+. .+++++|+++..+++|++. +. -+++...
T Consensus 176 av~nta~--v~~G~tvaV~GlGgVGlaaI~gA~~agA-~~IiAvD~~~~Kl~~A~~f----GA--------T~~vn~~~~ 240 (366)
T COG1062 176 AVVNTAK--VEPGDTVAVFGLGGVGLAAIQGAKAAGA-GRIIAVDINPEKLELAKKF----GA--------THFVNPKEV 240 (366)
T ss_pred Hhhhccc--CCCCCeEEEEeccHhHHHHHHHHHHcCC-ceEEEEeCCHHHHHHHHhc----CC--------ceeecchhh
Confidence 4445554 89999999999997 7777777777655 7999999999999999763 22 1222221
Q ss_pred --CCCC--CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 134 --GRKG--WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 134 --~~~~--~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+.+. ....+..|.++......+.++.....+.++|..++.
T Consensus 241 ~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 241 DDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred hhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEE
Confidence 1110 011246788877777777888888899899988874
No 316
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=95.70 E-value=0.15 Score=42.65 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=64.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe--CCCCC---CC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV--GDGRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~--~d~~~---~~ 138 (215)
.++++.+||-.|+|. |..+..+++..|. .+|+++|.++...+.+++ .+.. .-++... .+... ..
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~----~Ga~-----~~i~~~~~~~~~~~~v~~~ 251 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKK----LGAT-----DCVNPNDYDKPIQEVIVEI 251 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCC-----eEEcccccchhHHHHHHHH
Confidence 367789999999986 8888888888753 379999999998887754 2221 0111110 00000 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028016 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
.. +.+|+|+.............+.++++ |.+++.
T Consensus 252 ~~-~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 252 TD-GGVDYSFECIGNVNVMRAALECCHKGWGESIII 286 (368)
T ss_pred hC-CCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEE
Confidence 11 36899998766656677788999886 988764
No 317
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=95.66 E-value=0.12 Score=42.05 Aligned_cols=90 Identities=19% Similarity=0.309 Sum_probs=61.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
+.++.+||-.|+|. |..+..+++..| .++++++.++...+.+++ + +.. .+... ... .....+
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G--~~vi~~~~~~~~~~~~~~-~---g~~------~~~~~----~~~-~~~~~~ 215 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTG--PDVVLVGRHSEKLALARR-L---GVE------TVLPD----EAE-SEGGGF 215 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-c---CCc------EEeCc----ccc-ccCCCC
Confidence 67788999998775 677777787765 468999988888777765 2 221 11111 111 122569
Q ss_pred cEEEEccCCCCchHHHHHhcCCCcEEEE
Q 028016 145 DAIHVGAAAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
|+++....-....+.+.+.|+++|.++.
T Consensus 216 d~vid~~g~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 216 DVVVEATGSPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred CEEEECCCChHHHHHHHHHhhcCCEEEE
Confidence 9999875554556778889999999987
No 318
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=95.65 E-value=0.18 Score=42.78 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=64.4
Q ss_pred CCCCCEEEEEc-CCc-cHHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC----CCCC--
Q 028016 66 LKPGMHALDIG-SGT-GYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG----DGRK-- 136 (215)
Q Consensus 66 ~~~~~~vLdiG-~G~-G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~----d~~~-- 136 (215)
++++.+|+-+| +|. |..+..+++..|. ..+++++|.++..++.+++.+...... .+ ....++.. +...
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~--~G-a~~~~i~~~~~~~~~~~v 249 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAAS--RG-IELLYVNPATIDDLHATL 249 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccc--cC-ceEEEECCCccccHHHHH
Confidence 57788999997 565 8888888887532 147999999999999887643210000 00 01111111 1111
Q ss_pred -CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 137 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 -~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.......+|+|+.............+.++++|.+++.
T Consensus 250 ~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 250 MELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEE
Confidence 0112246999988665556677888999998876654
No 319
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=95.64 E-value=0.14 Score=40.67 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=62.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
.+.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++. +.. +.+..... . ......
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~~~----g~~-----~~~~~~~~---~-~~~~~~ 159 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAEAL----GPA-----DPVAADTA---D-EIGGRG 159 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHHHc----CCC-----ccccccch---h-hhcCCC
Confidence 467788999999876 7777888888753 2499999988887766542 100 11100000 0 112246
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+|+.............+.|+++|.++..
T Consensus 160 ~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 160 ADVVIEASGSPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred CCEEEEccCChHHHHHHHHHhcCCcEEEEE
Confidence 999987655555667889999999999864
No 320
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=95.61 E-value=0.12 Score=42.77 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=63.3
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCC---CC
Q 028016 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~---~~ 138 (215)
.++++.+||-.|+ | .|..+..+++..| .++++++.++...+.+++.+ +.. .-++.... +... ..
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~~l---Ga~-----~vi~~~~~~~~~~~i~~~ 224 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKNKL---GFD-----EAFNYKEEPDLDAALKRY 224 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhc---CCC-----EEEECCCcccHHHHHHHH
Confidence 3678899999998 4 4888889999876 57999998888777665332 211 01111101 1111 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.. +.+|+|+....- .....+.+.|+++|.+++.
T Consensus 225 ~~-~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 225 FP-EGIDIYFDNVGG-DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CC-CCcEEEEECCCH-HHHHHHHHHhccCCEEEEE
Confidence 12 468999876553 4667889999999998864
No 321
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=95.57 E-value=0.082 Score=43.96 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=59.3
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
.++.+|+-.|+|. |..+..+++..| .++++++.++.....+.+.+ +.. .+ +...+..........+|
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~~~---Ga~------~~-i~~~~~~~~~~~~~~~D 246 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALEHL---GAD------DY-LVSSDAAEMQEAADSLD 246 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhc---CCc------EE-ecCCChHHHHHhcCCCc
Confidence 5788999888876 888888888875 46888887776555443322 211 11 10011000000013589
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 146 AIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+.........+.+.+.|+++|.++..
T Consensus 247 ~vid~~g~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 247 YIIDTVPVFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred EEEECCCchHHHHHHHHHhccCCEEEEE
Confidence 9987766555677788999999998874
No 322
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.42 E-value=0.031 Score=43.19 Aligned_cols=89 Identities=17% Similarity=0.155 Sum_probs=61.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCC----C----CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--
Q 028016 69 GMHALDIGSGTGYLTACFALMVGP----Q----GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-- 138 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~----~----~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-- 138 (215)
-.+++|+++..|+.+..+++.+.. . .+++++|+.+-+ +.+.+.-+++|++...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------------PI~GV~qlq~DIT~~sta 104 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------------PIEGVIQLQGDITSASTA 104 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------------ccCceEEeecccCCHhHH
Confidence 368999999999999999887732 1 238999975521 1256777788877521
Q ss_pred ------CCCCCccEEEEccCC-----CCch------------HHHHHhcCCCcEEEEEe
Q 028016 139 ------PEFAPYDAIHVGAAA-----PEIP------------QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 139 ------~~~~~~D~V~~~~~~-----~~~~------------~~~~~~Lk~gG~lv~~~ 174 (215)
...++.|+|+|++.. |++- .-...+|||||.++.-+
T Consensus 105 e~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 105 EAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred HHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 233689999999853 3222 12357899999998643
No 323
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.42 E-value=0.32 Score=35.80 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028016 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+.+.+.....++.+|+-+||=+-...+.- ...+..+++..|.+....... .+ .++.-|.
T Consensus 12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~~~---------------~~-~F~fyD~ 73 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQFG---------------GD-EFVFYDY 73 (162)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHhcC---------------Cc-ceEECCC
Confidence 34444555433456789999999875544333 223557899999987543221 12 3445554
Q ss_pred CCCC--C--CCCCccEEEEccCCCC------chHHHHHhcCCCcEEEEEeCCC
Q 028016 135 RKGW--P--EFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 135 ~~~~--~--~~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.... + -.++||+|++++++-. ....+..++++++.+++.++.-
T Consensus 74 ~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 74 NEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred CChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 4321 1 1268999999999821 1234556678999999987653
No 324
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=95.40 E-value=0.063 Score=44.00 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028016 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
++.+||..|+|. |..+..+++..|. .++++++.++...+.+++. +.. .-+.....+........+.+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~~~~~~~----g~~-----~vi~~~~~~~~~~~~~~~~vd~ 234 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPLAVARAM----GAD-----ETVNLARDPLAAYAADKGDFDV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHc----CCC-----EEEcCCchhhhhhhccCCCccE
Confidence 688999998876 7777888887653 3789999888877755431 111 0000000011111112245999
Q ss_pred EEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 147 IHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 147 V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
++.........+.+.+.|+++|.++..
T Consensus 235 vld~~g~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 235 VFEASGAPAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 997765445567889999999999864
No 325
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.34 E-value=0.13 Score=44.58 Aligned_cols=95 Identities=22% Similarity=0.205 Sum_probs=65.5
Q ss_pred CEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHH-HHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 70 MHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQ-NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~-~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..|+-+|+|.|-+.....+.. .-+.+++++|.++.++-..+. ++..+. .+++++..|.....++....|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~-------~~Vtii~~DMR~w~ap~eq~D 441 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWD-------NRVTIISSDMRKWNAPREQAD 441 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhc-------CeeEEEeccccccCCchhhcc
Confidence 357899999997766554332 223689999999998766543 333332 689999999987655447889
Q ss_pred EEEEc----cCC----CCchHHHHHhcCCCcEEE
Q 028016 146 AIHVG----AAA----PEIPQALIDQLKPGGRMV 171 (215)
Q Consensus 146 ~V~~~----~~~----~~~~~~~~~~Lk~gG~lv 171 (215)
++++- ... ++.++.+.+.|||.|+.|
T Consensus 442 I~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 442 IIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred chHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 88532 222 345566789999997665
No 326
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.32 E-value=0.093 Score=44.43 Aligned_cols=87 Identities=16% Similarity=0.112 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+.+|+-+|+|. |......++.+| .+|+++|.++.....+.. .+ ..+. +..+.. ...|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A~~----~G---------~~v~--~leeal---~~aD 252 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEAAM----DG---------FRVM--TMEEAA---KIGD 252 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHHHh----cC---------CEeC--CHHHHH---hcCC
Confidence 4688999999998 877777777765 589999998865443332 11 1111 111111 3469
Q ss_pred EEEEccCCCCchH-HHHHhcCCCcEEEEE
Q 028016 146 AIHVGAAAPEIPQ-ALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~-~~~~~Lk~gG~lv~~ 173 (215)
+|+......+++. .....+|+|++++..
T Consensus 253 VVItaTG~~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 253 IFITATGNKDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred EEEECCCCHHHHHHHHHhcCCCCcEEEEE
Confidence 9888777767665 478899999988864
No 327
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=95.31 E-value=0.28 Score=40.93 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=63.7
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC--CCCC---CCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRK---GWP 139 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~--d~~~---~~~ 139 (215)
++++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .-+..... +... ...
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~-~~vi~~~~~~~~~~~~~~----lGa~-----~~i~~~~~~~~~~~~v~~~~ 253 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGA-SRIIGIDINPDKFELAKK----FGAT-----DCVNPKDHDKPIQQVLVEMT 253 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCCC-----EEEcccccchHHHHHHHHHh
Confidence 67889999999876 7888888888753 379999999998887753 2221 01111110 0100 011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028016 140 EFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
. +.+|+|+....-........+.|+++ |.++..
T Consensus 254 ~-~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 254 D-GGVDYTFECIGNVKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred C-CCCcEEEECCCChHHHHHHHHhhccCCCeEEEE
Confidence 2 36999998766555677788999987 988764
No 328
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=95.22 E-value=0.06 Score=44.88 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=63.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC--CCCC---CC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~--d~~~---~~ 138 (215)
.+.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .-+..... +... ..
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~~~~~~~~~~----~Ga~-----~~i~~~~~~~~~~~~v~~~ 253 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLNPSKFEQAKK----FGVT-----EFVNPKDHDKPVQEVIAEM 253 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCCc-----eEEcccccchhHHHHHHHH
Confidence 367889999999876 7788888888753 379999999988887754 2211 01111100 0000 11
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028016 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
.. +.+|+++.............+.+++| |.+++.
T Consensus 254 ~~-~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 254 TG-GGVDYSFECTGNIDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred hC-CCCCEEEECCCChHHHHHHHHHhhcCCCEEEEE
Confidence 12 36899987765555667788899996 988764
No 329
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=95.21 E-value=0.39 Score=39.13 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=61.9
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCCC--CC
Q 028016 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKG--WP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~~--~~ 139 (215)
.++++.+||-.|+ | .|..+..+++..| .++++++.++...+.+++ .+.. .-+..... +.... ..
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~~----lGa~-----~vi~~~~~~~~~~~~~~~ 203 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLKK----LGFD-----VAFNYKTVKSLEETLKKA 203 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCC-----EEEeccccccHHHHHHHh
Confidence 3678899999984 4 4888888898875 578999988887777643 2221 00111110 11110 01
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+.+|+|+....- .......++|+++|.++..
T Consensus 204 ~~~gvdvv~d~~G~-~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 204 SPDGYDCYFDNVGG-EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CCCCeEEEEECCCH-HHHHHHHHHhCcCcEEEEe
Confidence 11469999876554 3457889999999999864
No 330
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.07 E-value=0.32 Score=39.96 Aligned_cols=98 Identities=24% Similarity=0.294 Sum_probs=62.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe-EEEeCCC---C---C
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDG---R---K 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v-~~~~~d~---~---~ 136 (215)
.+.++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ + +.. .+ .....+. . .
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~-~~v~~~~~~~~~~~~~~~-~---g~~------~vi~~~~~~~~~~~~~~~ 227 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGA-TKVVVTDIDPSRLEFAKE-L---GAT------HTVNVRTEDTPESAEKIA 227 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH-c---CCc------EEeccccccchhHHHHHH
Confidence 367888998888876 7788888888752 238888888877666643 2 211 11 1111110 0 0
Q ss_pred CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 137 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.......+|+|+.............+.|+++|.++..
T Consensus 228 ~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 228 ELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred HHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 1112245999997765544677889999999998864
No 331
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=95.06 E-value=0.33 Score=39.84 Aligned_cols=99 Identities=21% Similarity=0.298 Sum_probs=60.8
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
...++.+||..|+|. |..+..+++..|. ..+++++.++...+.+++. +.. .-+.....+... ....
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~~----g~~-----~vi~~~~~~~~~~i~~~~~ 233 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKEA----GAT-----DIINPKNGDIVEQILELTG 233 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHh----CCc-----EEEcCCcchHHHHHHHHcC
Confidence 356788998888764 7777888888642 3688888887766665432 111 001111111101 0112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+|+++.............+.|+++|.++..
T Consensus 234 ~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 234 GRGVDCVIEAVGFEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEE
Confidence 256999987654445677888999999998854
No 332
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.06 E-value=0.1 Score=44.49 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
-.+.+|+-+|+|. |......++.+| .+|+.+|.++.....+.. .+ ..+. +..+.. ..+|
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~----~G---------~~v~--~l~eal---~~aD 269 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAM----DG---------FRVM--TMEEAA---ELGD 269 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHh----cC---------CEec--CHHHHH---hCCC
Confidence 3688999999997 777777777665 589999999876444322 11 1111 111111 3589
Q ss_pred EEEEccCCCCchH-HHHHhcCCCcEEEEE
Q 028016 146 AIHVGAAAPEIPQ-ALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~-~~~~~Lk~gG~lv~~ 173 (215)
+|+......++++ .....+|+|++++..
T Consensus 270 VVI~aTG~~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 270 IFVTATGNKDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred EEEECCCCHHHHHHHHHhcCCCCCEEEEc
Confidence 9988876666665 678899999988764
No 333
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=95.03 E-value=0.097 Score=43.93 Aligned_cols=93 Identities=22% Similarity=0.143 Sum_probs=58.9
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHH-HHHHHHHHHhhcccCcccCCCeEEEeC-CCCCCCCCCCC
Q 028016 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPEL-VVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGWPEFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~-~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~ 143 (215)
.++.+|+-.|+|. |..+..+++..| .++++++.++.. .+.++ ..+.. . ++.. +........+.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~----~lGa~------~--~i~~~~~~~v~~~~~~ 242 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAID----RLGAD------S--FLVTTDSQKMKEAVGT 242 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHH----hCCCc------E--EEcCcCHHHHHHhhCC
Confidence 4688999999986 888888898876 468888876543 34432 22221 1 1110 00000000025
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+|+...........+.+.++++|.++..
T Consensus 243 ~D~vid~~G~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 243 MDFIIDTVSAEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CcEEEECCCcHHHHHHHHHhhcCCCEEEEE
Confidence 899998766555667888999999999864
No 334
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=95.01 E-value=0.36 Score=40.02 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe-EEEeCCCC------CCC
Q 028016 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGR------KGW 138 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v-~~~~~d~~------~~~ 138 (215)
.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .+ .....+.. ...
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~~------~vi~~~~~~~~~~~~~i~~~ 244 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGA-RRVIVIDGSPERLELARE----FGAD------ATIDIDELPDPQRRAIVRDI 244 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCCC------eEEcCcccccHHHHHHHHHH
Confidence 4778999999875 7777888888753 379999988877666542 2211 11 11100000 011
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+|+.............+.|+++|.++..
T Consensus 245 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 245 TGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred hCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEE
Confidence 12246999997655445567788999999999864
No 335
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=95.00 E-value=0.17 Score=40.26 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=34.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhC----CCCeEEEEecChHHHH
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVG----PQGRAVGVEHIPELVV 107 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~v~~~D~s~~~~~ 107 (215)
+.++..++|+|||.|.++.+++..+. +...++.||......+
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K 61 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK 61 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc
Confidence 56778999999999999999998873 2368999998775543
No 336
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.98 E-value=0.17 Score=37.47 Aligned_cols=99 Identities=18% Similarity=0.153 Sum_probs=60.8
Q ss_pred EEcCCccHHHHHHHHHhCCCCeEEEEecCh--HHHHH---HHHHHHhhcccCcccCCCeEEEe-CCCCCCC--C--CCCC
Q 028016 74 DIGSGTGYLTACFALMVGPQGRAVGVEHIP--ELVVS---SIQNIEKSAAAPLLKEGSLSVHV-GDGRKGW--P--EFAP 143 (215)
Q Consensus 74 diG~G~G~~~~~l~~~~~~~~~v~~~D~s~--~~~~~---a~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~--~--~~~~ 143 (215)
-+|=|.-+++..+++..+....+++.-.+. ...+. +..++..... ..+.+.. .|+.... . ....
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~------~g~~V~~~VDat~l~~~~~~~~~~ 75 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE------LGVTVLHGVDATKLHKHFRLKNQR 75 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh------cCCccccCCCCCcccccccccCCc
Confidence 467778889999999876345666655444 33332 2244443321 2343333 2444321 1 3378
Q ss_pred ccEEEEccCCCC-------------------chHHHHHhcCCCcEEEEEeCCCc
Q 028016 144 YDAIHVGAAAPE-------------------IPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 144 ~D~V~~~~~~~~-------------------~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
||.|+.+.+... ++..+.++|+++|.+.++..+..
T Consensus 76 FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~ 129 (166)
T PF10354_consen 76 FDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ 129 (166)
T ss_pred CCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 999998887533 22457889999999999987753
No 337
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=94.96 E-value=0.078 Score=43.48 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=61.8
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
...++.+||-.|+|. |..+..+++..| .+++.++.++...+.+++ + +.. .-+.....+..........
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~-~---g~~-----~~i~~~~~~~~~~~~~~~~ 228 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLARK-L---GAH-----HYIDTSKEDVAEALQELGG 228 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH-c---CCc-----EEecCCCccHHHHHHhcCC
Confidence 367788999999876 778888888875 479999998887777643 2 211 0011111111100111135
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+++.............+.|+++|.++..
T Consensus 229 ~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 229 AKLILATAPNAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred CCEEEECCCchHHHHHHHHHcccCCEEEEE
Confidence 899987544445667788999999998864
No 338
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=94.82 E-value=0.38 Score=40.03 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=63.8
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC---CCC---CC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD---GRK---GW 138 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d---~~~---~~ 138 (215)
+.++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ .+. . .++..+ ... ..
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~-~~v~~~~~~~~k~~~~~~----~g~------~--~~i~~~~~~~~~~v~~~ 250 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGC-TTIIAVDIVDSRLELAKE----LGA------T--HVINPKEEDLVAAIREI 250 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCC------c--EEecCCCcCHHHHHHHH
Confidence 56788999998876 7888888888764 369999999887766643 111 1 111111 100 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028016 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
. ...+|+|+...........+.+.|+++|.++...
T Consensus 251 ~-~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 251 T-GGGVDYALDTTGVPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred h-CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeC
Confidence 1 2469999977655566788899999999988743
No 339
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.81 E-value=0.1 Score=47.16 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh------CC-----CCeEEEEecChHHHHHHHH--------------HHHhhccc-C
Q 028016 67 KPGMHALDIGSGTGYLTACFALMV------GP-----QGRAVGVEHIPELVVSSIQ--------------NIEKSAAA-P 120 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~------~~-----~~~v~~~D~s~~~~~~a~~--------------~~~~~~~~-~ 120 (215)
++.-+|+|+|-|+|...+...+.. .+ .-+++++|..+-..+..++ ....+... +
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 334689999999999887776544 12 2489999976532222222 11111110 0
Q ss_pred c-----ccCC--CeEEEeCCCCCCCCCC-CCccEEEEccCC---------CCchHHHHHhcCCCcEEEEEeC
Q 028016 121 L-----LKEG--SLSVHVGDGRKGWPEF-APYDAIHVGAAA---------PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 121 ~-----~~~~--~v~~~~~d~~~~~~~~-~~~D~V~~~~~~---------~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
. +... .+++..+|+.+..... ..+|+|+.++-. .+++..+.++++|||.+..-+.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~ 207 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS 207 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh
Confidence 0 0011 4556778876644422 469999988643 2355788999999999986543
No 340
>PLN02494 adenosylhomocysteinase
Probab=94.80 E-value=0.14 Score=44.11 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
-.+.+|+-+|+|. |......++.+| .+|+++|.++.....+.. . ...+. +..+.. ...|
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~----~---------G~~vv--~leEal---~~AD 311 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALM----E---------GYQVL--TLEDVV---SEAD 311 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHh----c---------CCeec--cHHHHH---hhCC
Confidence 4589999999998 777777777665 579999998865444322 1 11111 111111 3579
Q ss_pred EEEEccCCCCch-HHHHHhcCCCcEEEEEe
Q 028016 146 AIHVGAAAPEIP-QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~~-~~~~~~Lk~gG~lv~~~ 174 (215)
+|+......+++ ......+|+||+|+-..
T Consensus 312 VVI~tTGt~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 312 IFVTTTGNKDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred EEEECCCCccchHHHHHhcCCCCCEEEEcC
Confidence 999887777764 77899999999998753
No 341
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=94.80 E-value=0.35 Score=39.39 Aligned_cols=96 Identities=20% Similarity=0.240 Sum_probs=61.9
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC----CCC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----GWP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~ 139 (215)
.+.++.+||..|+|. |..+..+++..|. ..+++++.++...+.+++. +. . .++..+... ...
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~~----g~------~--~~~~~~~~~~~~~~~~ 222 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGA-SRVTVAEPNEEKLELAKKL----GA------T--ETVDPSREDPEAQKED 222 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHh----CC------e--EEecCCCCCHHHHHHh
Confidence 367788999998764 7777778887652 2388898888877766431 11 1 111111111 011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
....+|+++.............+.|+++|.++..
T Consensus 223 ~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 223 NPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred cCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence 2256999998755555677888999999998864
No 342
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=94.76 E-value=0.52 Score=38.87 Aligned_cols=98 Identities=23% Similarity=0.183 Sum_probs=62.8
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
..++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ + +.. .-+.....+..+ .....
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~-~~v~~~~~~~~~~~~~~~-~---ga~-----~~i~~~~~~~~~~l~~~~~~ 239 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGA-SKIIVSEPSEARRELAEE-L---GAT-----IVLDPTEVDVVAEVRKLTGG 239 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH-h---CCC-----EEECCCccCHHHHHHHHhCC
Confidence 67788999998775 7777788887652 378999988888777643 2 211 001111111111 01121
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+.........+.+.+.|+++|.++..
T Consensus 240 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 240 GGVDVSFDCAGVQATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CCCCEEEECCCCHHHHHHHHHhccCCCEEEEE
Confidence 35999998766555667888999999998764
No 343
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.67 E-value=0.12 Score=40.79 Aligned_cols=47 Identities=21% Similarity=0.199 Sum_probs=37.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCC-------CeEEEEecChHHHHHHHHHHHh
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQ-------GRAVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~-------~~v~~~D~s~~~~~~a~~~~~~ 115 (215)
..+|+|+|+|+|.++..+++.+... .+++.+|.|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3699999999999999998877532 4899999999998887777755
No 344
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.64 E-value=0.22 Score=40.44 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CCCCCCCCCCCCcc
Q 028016 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~D 145 (215)
.+.+|+-+|+|. |......++.+| .+|+.+|.++...+.++ ..+ .++.. .+..+. ...+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~----~~G---------~~~~~~~~l~~~---l~~aD 212 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARIT----EMG---------LSPFHLSELAEE---VGKID 212 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH----HcC---------CeeecHHHHHHH---hCCCC
Confidence 478999999987 666666666655 58999999977554443 211 12211 111111 14689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEE
Q 028016 146 AIHVGAAAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
+|+...+..-+.+...+.+++|+.++=
T Consensus 213 iVI~t~p~~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 213 IIFNTIPALVLTKEVLSKMPPEALIID 239 (296)
T ss_pred EEEECCChhhhhHHHHHcCCCCcEEEE
Confidence 999876554445677788999887763
No 345
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=94.52 E-value=0.6 Score=37.98 Aligned_cols=91 Identities=25% Similarity=0.263 Sum_probs=59.3
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
.+.++.+||-.|+|. |..+..+++..| .++++++.++...+.+++ + +.. .+...+ .. . ...
T Consensus 164 ~~~~~~~vlV~g~g~vg~~~~~la~~~g--~~v~~~~~~~~~~~~~~~-~---g~~--------~~~~~~--~~-~-~~~ 225 (329)
T cd08298 164 GLKPGQRLGLYGFGASAHLALQIARYQG--AEVFAFTRSGEHQELARE-L---GAD--------WAGDSD--DL-P-PEP 225 (329)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEcCChHHHHHHHH-h---CCc--------EEeccC--cc-C-CCc
Confidence 367788898888875 666677777765 578888888876666633 2 211 111111 00 1 246
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+++.........+.+.+.|+++|.++..
T Consensus 226 vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 226 LDAAIIFAPVGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred ccEEEEcCCcHHHHHHHHHHhhcCCEEEEE
Confidence 898876544445678889999999999863
No 346
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=94.50 E-value=0.58 Score=38.08 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=61.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe-EEEeCCCCCCCCCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRKGWPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~ 143 (215)
+.++.+||-.|+|. |..+..+++..| .++++++.++...+.+++ + +. ..+ .....+.... .. ..
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~-~---g~------~~~~~~~~~~~~~~-~~-~~ 225 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARK-L---GA------DEVVDSGAELDEQA-AA-GG 225 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-h---CC------cEEeccCCcchHHh-cc-CC
Confidence 67788999999874 777777888765 578999988887776643 2 11 111 0000011001 12 46
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028016 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+++...........+.+.|+++|.++...
T Consensus 226 ~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 226 ADVILVTVVSGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CCEEEECCCcHHHHHHHHHhcccCCEEEEEC
Confidence 9999876454456678889999999888753
No 347
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.38 E-value=0.1 Score=42.91 Aligned_cols=99 Identities=22% Similarity=0.180 Sum_probs=61.9
Q ss_pred cCCCCCEEEEEcCCc--cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC---CC
Q 028016 65 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~ 139 (215)
.++++.+||-.|+.. |..+..+++.+|. .++++-.+++..+.+++ .+.+ .-+.+...|+.+. ..
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~~~~~----lGAd-----~vi~y~~~~~~~~v~~~t 207 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLELLKE----LGAD-----HVINYREEDFVEQVRELT 207 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHHHHHHHh----cCCC-----EEEcCCcccHHHHHHHHc
Confidence 478899999999543 7889999999853 56666666655554443 3321 1222223332221 11
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEeC
Q 028016 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
....+|+|+..-.-+. .....+.|+++|.++..-.
T Consensus 208 ~g~gvDvv~D~vG~~~-~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 208 GGKGVDVVLDTVGGDT-FAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCCCceEEEECCCHHH-HHHHHHHhccCCEEEEEec
Confidence 2246999997766544 4457889999999988543
No 348
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=94.28 E-value=1.2 Score=39.03 Aligned_cols=102 Identities=10% Similarity=0.069 Sum_probs=58.1
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhC---CCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028016 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG---PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
..+-..+...+...+.....++..+.|..||+|.+.....+..+ ....+++.+....+...++.++.-.+.. .
T Consensus 197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~----~ 272 (501)
T TIGR00497 197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID----Y 272 (501)
T ss_pred eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC----c
Confidence 33333344444444431122557899999999988776554332 1246999999999999998876443321 1
Q ss_pred CCeEEEeCCCCCC--CCCCCCccEEEEccCC
Q 028016 125 GSLSVHVGDGRKG--WPEFAPYDAIHVGAAA 153 (215)
Q Consensus 125 ~~v~~~~~d~~~~--~~~~~~~D~V~~~~~~ 153 (215)
+......+|.... .....+||.|++++++
T Consensus 273 ~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf 303 (501)
T TIGR00497 273 ANFNIINADTLTTKEWENENGFEVVVSNPPY 303 (501)
T ss_pred cccCcccCCcCCCccccccccCCEEeecCCc
Confidence 1222223333221 1122468888877653
No 349
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.26 E-value=0.51 Score=38.70 Aligned_cols=96 Identities=16% Similarity=0.234 Sum_probs=61.1
Q ss_pred CCCC--CEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe-EEEeCCCCC---C
Q 028016 66 LKPG--MHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRK---G 137 (215)
Q Consensus 66 ~~~~--~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v-~~~~~d~~~---~ 137 (215)
++++ .+||-.|+ | .|..+..+++..|. .++++++.+++..+.+++.+ +. +.+ .....+..+ .
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~-~~Vi~~~~s~~~~~~~~~~l---Ga------~~vi~~~~~~~~~~i~~ 219 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGC-SRVVGICGSDEKCQLLKSEL---GF------DAAINYKTDNVAERLRE 219 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHhc---CC------cEEEECCCCCHHHHHHH
Confidence 4554 89999986 3 48888888888752 27999998888777766533 21 111 111111111 0
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
... ..+|+|+....-. ......+.|+++|.++..
T Consensus 220 ~~~-~gvd~vid~~g~~-~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 220 LCP-EGVDVYFDNVGGE-ISDTVISQMNENSHIILC 253 (345)
T ss_pred HCC-CCceEEEECCCcH-HHHHHHHHhccCCEEEEE
Confidence 112 4699998765543 357789999999999863
No 350
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=94.20 E-value=0.59 Score=38.34 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=63.0
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCC---CC
Q 028016 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~---~~ 138 (215)
.++++.+||-.|+ | .|..+..+++..| .+++++..++...+.+++.+ +.. .-+..... +... ..
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~l---Ga~-----~vi~~~~~~~~~~~i~~~ 217 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNKL---GFD-----DAFNYKEEPDLDAALKRY 217 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhc---CCc-----eeEEcCCcccHHHHHHHh
Confidence 3678899999997 4 4888888898876 57888888888777776533 211 01111111 1110 11
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.. ..+|+|+....- .....+.+.|+++|.++..
T Consensus 218 ~~-~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 218 FP-NGIDIYFDNVGG-KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CC-CCcEEEEECCCH-HHHHHHHHHhccCcEEEEe
Confidence 12 468999876543 5567889999999999864
No 351
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.13 E-value=0.19 Score=42.23 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=56.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
+.+|+-+|+|. |..+...++.+| .+|+.+|.++...+.+...+.. .+.....+..........+|+|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g~----------~v~~~~~~~~~l~~~l~~aDvV 234 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFGG----------RIHTRYSNAYEIEDAVKRADLL 234 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcCc----------eeEeccCCHHHHHHHHccCCEE
Confidence 46799999996 777777787766 4799999998776655433211 1111111100000011368999
Q ss_pred EEccCC-----CC-chHHHHHhcCCCcEEEEE
Q 028016 148 HVGAAA-----PE-IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 148 ~~~~~~-----~~-~~~~~~~~Lk~gG~lv~~ 173 (215)
+..... +. +.++..+.++++++++-.
T Consensus 235 I~a~~~~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 235 IGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred EEccccCCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 876422 22 336777889999887753
No 352
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.09 E-value=0.23 Score=41.32 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 028016 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 111 (215)
++++.+.. ..+-..|+|+|+|.|+++..++-..| ..|.+||.|....+.|++
T Consensus 143 elvSsi~~-f~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 143 ELVSSISD-FTGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHh-hcCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHH
Confidence 33444442 23347899999999999999986554 799999999766555543
No 353
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=94.06 E-value=0.55 Score=37.05 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh---C-CCCeEEEEecCh--------------------------HHHHHHHHHHHhhc
Q 028016 68 PGMHALDIGSGTGYLTACFALMV---G-PQGRAVGVEHIP--------------------------ELVVSSIQNIEKSA 117 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~---~-~~~~v~~~D~s~--------------------------~~~~~a~~~~~~~~ 117 (215)
-...|+|+||-.|..+..++..+ + .+.+++++|.=+ ...+..++++...+
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 34689999999998776654433 2 346799988321 12233333333322
Q ss_pred ccCcccCCCeEEEeCCCCCCCCC--CCCccEEEEccCCC----CchHHHHHhcCCCcEEEEE
Q 028016 118 AAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAP----EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 118 ~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~V~~~~~~~----~~~~~~~~~Lk~gG~lv~~ 173 (215)
+..+++.++.+.+.+.++. .+.+-++..+..+- ..++.+...|.|||++++-
T Consensus 154 ----l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~D 211 (248)
T PF05711_consen 154 ----LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFD 211 (248)
T ss_dssp ----TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred ----CCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEe
Confidence 2236899999998765553 24566666666552 3446678889999999983
No 354
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=94.05 E-value=1.2 Score=36.15 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=61.8
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCC
Q 028016 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~ 139 (215)
.+.++.+||-.|+ | .|..+..+++..| .++++++.++...+.+++ .+.. .-++....+... ...
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~----~Ga~-----~vi~~~~~~~~~~v~~~~ 208 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE----LGFD-----AVFNYKTVSLEEALKEAA 208 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCC-----EEEeCCCccHHHHHHHHC
Confidence 3678899999984 3 4888888898876 579999988887777654 2221 001111111111 011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
. ..+|+|+....- .......+.|+++|.++..
T Consensus 209 ~-~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 209 P-DGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred C-CCcEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence 2 468999865544 5567789999999998763
No 355
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=0.7 Score=36.37 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCC---CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCC
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFA 142 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~ 142 (215)
.+..++|+|+|+..-+..+.+.+.+ -..++.+|++...+....+.+..... .-.+.-+.+|....+. +..
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-----~l~v~~l~~~~~~~La~~~~~ 152 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-----GLEVNALCGDYELALAELPRG 152 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-----CCeEeehhhhHHHHHhcccCC
Confidence 3679999999999888888776633 26899999999988866555543211 1233344555543221 112
Q ss_pred CccE-EEEccCC--------CCchHHHHHhcCCCcEEEEEe
Q 028016 143 PYDA-IHVGAAA--------PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 143 ~~D~-V~~~~~~--------~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+--+ ++....+ ..++..+...|+||-.+++-+
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 2222 2333332 234567889999999998843
No 356
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=94.00 E-value=0.14 Score=42.02 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=62.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
.+.++.+||..|+|. |..+..+++..| .+++++..++...+.+++ + +.. .-+.....+... ....
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~-~---g~~-----~v~~~~~~~~~~~l~~~~~ 224 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFARE-L---GAD-----DTINVGDEDVAARLRELTD 224 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHH-h---CCC-----EEecCcccCHHHHHHHHhC
Confidence 467888999998875 778888888865 678888888877766643 2 111 011111111111 1112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+|+++....-......+.+.|+++|.++..
T Consensus 225 ~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 225 GEGADVVIDATGNPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 246999998754445667789999999998864
No 357
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.97 E-value=0.11 Score=35.17 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEec
Q 028016 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEH 101 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~ 101 (215)
+....+|+|||+|.+.-.+.+. | -.-.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-G--y~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-G--YPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-C--CCcccccc
Confidence 3567999999999998888776 3 45577885
No 358
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=93.86 E-value=0.89 Score=37.30 Aligned_cols=98 Identities=19% Similarity=0.212 Sum_probs=59.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC--CCCCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--KGWPEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~--~~~~~~~ 142 (215)
..++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .-+.....+.. ......+
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~~~~~~~~~ 230 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGA-SLVIASDPNPYRLELAKK----MGAD-----VVINPREEDVVEVKSVTDGT 230 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----hCcc-----eeeCcccccHHHHHHHcCCC
Confidence 46778888888765 7777888888652 268888777766655543 1111 00111111110 0011225
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+|+|+....-......+.+.|+++|.++..
T Consensus 231 ~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 231 GVDVVLEMSGNPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 7999998765555667788999999998864
No 359
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.85 E-value=0.049 Score=46.74 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=51.2
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCccEEE
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAIH 148 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~V~ 148 (215)
..|+|..+|.|+++.++.+. .|+....-+..-.-.-..+...|+ +-+ --|+.+.++. ..+||+|+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydRGL--------IG~-yhDWCE~fsTYPRTYDLlH 432 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDRGL--------IGV-YHDWCEAFSTYPRTYDLLH 432 (506)
T ss_pred eeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhccc--------chh-ccchhhccCCCCcchhhee
Confidence 47999999999999888653 255554433310000001111111 111 1133222221 26899999
Q ss_pred EccCCCC---------chHHHHHhcCCCcEEEE
Q 028016 149 VGAAAPE---------IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 149 ~~~~~~~---------~~~~~~~~Lk~gG~lv~ 172 (215)
++..+.. ++-++-+.|+|||.+++
T Consensus 433 A~~lfs~~~~rC~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 433 ADGLFSLYKDRCEMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred hhhhhhhhcccccHHHHHHHhHhhcCCCceEEE
Confidence 8876533 33467899999999998
No 360
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.79 E-value=0.11 Score=44.35 Aligned_cols=101 Identities=24% Similarity=0.277 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-------C
Q 028016 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------P 139 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------~ 139 (215)
..+..+|-+|-|.|.+...+...+ +...++++++++.+++.+++++.-.- ..+..+...|...+. .
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q------~~r~~V~i~dGl~~~~~~~k~~~ 366 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQ------SDRNKVHIADGLDFLQRTAKSQQ 366 (482)
T ss_pred cccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhh------hhhhhhhHhhchHHHHHHhhccc
Confidence 345678999999999998887776 44899999999999999998874321 123445555544321 2
Q ss_pred CCCCccEEEEccCCCC---------------chHHHHHhcCCCcEEEEEe
Q 028016 140 EFAPYDAIHVGAAAPE---------------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~---------------~~~~~~~~Lk~gG~lv~~~ 174 (215)
....||++..+-.-.. ++......|.|.|.+++..
T Consensus 367 ~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 367 EDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred cccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 3357999976643211 2234667899999999854
No 361
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.79 E-value=0.34 Score=36.99 Aligned_cols=33 Identities=33% Similarity=0.382 Sum_probs=24.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecC
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHI 102 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s 102 (215)
+.+|+-+|||. |......+.+.|. ++++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCC
Confidence 57899999996 6655544444455 689999977
No 362
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.77 E-value=0.36 Score=38.56 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=57.6
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC--CCccE
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--APYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~D~ 146 (215)
+..|+-+| -.-..+++++-. +--.++..+|+++..+....+...+.+. ++++.+.-|..+.++.. +.||+
T Consensus 153 gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g~------~~ie~~~~Dlr~plpe~~~~kFDv 224 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELGY------NNIEAFVFDLRNPLPEDLKRKFDV 224 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhCc------cchhheeehhcccChHHHHhhCCe
Confidence 56799998 333444444433 3237899999999999999988888654 68999999998877742 68999
Q ss_pred EEEccCC
Q 028016 147 IHVGAAA 153 (215)
Q Consensus 147 V~~~~~~ 153 (215)
.+.+++-
T Consensus 225 fiTDPpe 231 (354)
T COG1568 225 FITDPPE 231 (354)
T ss_pred eecCchh
Confidence 9887753
No 363
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=93.74 E-value=0.3 Score=42.18 Aligned_cols=88 Identities=16% Similarity=0.037 Sum_probs=58.0
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
-.+.+|+-+|+|. |......++.+| .+|+.+|.++.....+.. .+ +.+. +..+.. ...|
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~G--a~ViV~e~dp~~a~~A~~----~G---------~~~~--~leell---~~AD 311 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFG--ARVVVTEIDPICALQAAM----EG---------YQVV--TLEDVV---ETAD 311 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHh----cC---------ceec--cHHHHH---hcCC
Confidence 3578999999997 666666666655 589999988765433321 11 1111 111111 3589
Q ss_pred EEEEccCCCCch-HHHHHhcCCCcEEEEEe
Q 028016 146 AIHVGAAAPEIP-QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~~-~~~~~~Lk~gG~lv~~~ 174 (215)
+|+......+++ .+....+|||++|+-..
T Consensus 312 IVI~atGt~~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 312 IFVTATGNKDIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred EEEECCCcccccCHHHHhccCCCcEEEEcC
Confidence 998877666666 58889999999987653
No 364
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=93.70 E-value=0.97 Score=37.04 Aligned_cols=94 Identities=22% Similarity=0.339 Sum_probs=60.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe-EEEeCCCCCCCCCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRKGWPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~ 143 (215)
..++.+|+-.|+|. |..+..+++..| .++++++.++...+.+++ + +. +.+ .....+.... ....
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~-~---g~------~~vi~~~~~~~~~~--~~~~ 232 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALG--AEVTAFSRSPSKKEDALK-L---GA------DEFIATKDPEAMKK--AAGS 232 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-c---CC------cEEecCcchhhhhh--ccCC
Confidence 56778888888865 777777787765 578999988887776643 2 11 111 0000011011 1256
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+|+...........+.+.|+++|.++..
T Consensus 233 ~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 233 LDLIIDTVSASHDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred ceEEEECCCCcchHHHHHHHhcCCCEEEEE
Confidence 899997666554567889999999998864
No 365
>PRK10083 putative oxidoreductase; Provisional
Probab=93.66 E-value=0.25 Score=40.43 Aligned_cols=99 Identities=17% Similarity=0.086 Sum_probs=60.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHH-hCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-C
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALM-VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-F 141 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 141 (215)
...++.+||-.|+|. |..+..+++. +|. ..+++++.++...+.+++ .+.. .-+.....+....... .
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~-~~v~~~~~~~~~~~~~~~----~Ga~-----~~i~~~~~~~~~~~~~~g 226 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNV-KAVIVADRIDERLALAKE----SGAD-----WVINNAQEPLGEALEEKG 226 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHH----hCCc-----EEecCccccHHHHHhcCC
Confidence 367788999999875 6677777774 353 468889998888777654 2211 0011111111111111 1
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+.............+.|+++|.++..
T Consensus 227 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 227 IKPTLIIDAACHPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 23568877655455667788999999999874
No 366
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.66 E-value=0.26 Score=40.02 Aligned_cols=93 Identities=15% Similarity=0.172 Sum_probs=63.7
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028016 70 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 70 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
.+|.-+|-|. |..+..++-.+| .+|+.+|.|...+......+. .++.....+.......-.++|+|+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~f~----------~rv~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDLFG----------GRVHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred ccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhhhhHhhC----------ceeEEEEcCHHHHHHHhhhccEEE
Confidence 4788899997 888888887655 799999999998887766543 355555554433222224688886
Q ss_pred EccCC-----CC-chHHHHHhcCCCcEEEEEe
Q 028016 149 VGAAA-----PE-IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 149 ~~~~~-----~~-~~~~~~~~Lk~gG~lv~~~ 174 (215)
..--. +. +.++..+.+|||++++=..
T Consensus 237 gaVLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 237 GAVLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEEEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 54322 22 3367899999999988543
No 367
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.63 E-value=0.15 Score=41.58 Aligned_cols=70 Identities=21% Similarity=0.186 Sum_probs=48.5
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CC-CccEEE
Q 028016 71 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FA-PYDAIH 148 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~-~~D~V~ 148 (215)
+++|+.||.|.++..+... |. .-+.++|+++.+.+.-+.++ . ....+|+.+.... .. .+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~-~~~~a~e~~~~a~~~y~~N~-----------~--~~~~~Di~~~~~~~l~~~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GF-EVVWAVEIDPDACETYKANF-----------P--EVICGDITEIDPSDLPKDVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TE-EEEEEEESSHHHHHHHHHHH-----------T--EEEESHGGGCHHHHHHHT-SEEE
T ss_pred cEEEEccCccHHHHHHHhc-Cc-EEEEEeecCHHHHHhhhhcc-----------c--ccccccccccccccccccceEEE
Confidence 7899999999999999877 43 57899999999888777665 2 6677777654321 01 599999
Q ss_pred EccCCCC
Q 028016 149 VGAAAPE 155 (215)
Q Consensus 149 ~~~~~~~ 155 (215)
..++++.
T Consensus 67 ggpPCQ~ 73 (335)
T PF00145_consen 67 GGPPCQG 73 (335)
T ss_dssp EE---TT
T ss_pred eccCCce
Confidence 8887643
No 368
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=93.60 E-value=1 Score=36.98 Aligned_cols=98 Identities=17% Similarity=0.241 Sum_probs=60.2
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
+.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .-+.....+... .....
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~-----~~v~~~~~~~~~~i~~~~~~ 233 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSP-SKIIMVDLDDNRLEVAKK----LGAT-----HTVNSAKGDAIEQVLELTDG 233 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCC-----ceeccccccHHHHHHHHhCC
Confidence 56788888888865 6677778887653 468889888877665543 2211 111111111100 01122
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+.........+.+.+.|+++|.++..
T Consensus 234 ~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 234 RGVDVVIEAVGIPATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCCCEEEECCCCHHHHHHHHHhccCCcEEEEe
Confidence 46999987655444567778999999998864
No 369
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.57 E-value=0.47 Score=32.36 Aligned_cols=87 Identities=22% Similarity=0.229 Sum_probs=55.7
Q ss_pred CCccHHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCCCCccEEEEcc
Q 028016 77 SGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPYDAIHVGA 151 (215)
Q Consensus 77 ~G~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~V~~~~ 151 (215)
||.|..+..+++.+.... +++.+|.++..++.+++ ..+.++.+|..+.. ...+.++.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-------------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-------------EGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-------------TTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-------------cccccccccchhhhHHhhcCccccCEEEEcc
Confidence 455667777766654334 89999999998777654 34678899987631 1225788887776
Q ss_pred CCCCch---HHHHHhcCCCcEEEEEeCC
Q 028016 152 AAPEIP---QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 152 ~~~~~~---~~~~~~Lk~gG~lv~~~~~ 176 (215)
.-...- -...+.+.|...+++-..+
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 543221 2345667788888876654
No 370
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.56 E-value=0.19 Score=41.21 Aligned_cols=69 Identities=20% Similarity=0.167 Sum_probs=47.2
Q ss_pred EEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccEEEEc
Q 028016 72 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAIHVG 150 (215)
Q Consensus 72 vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~V~~~ 150 (215)
|+|+.||.|.++..+... |- ..+.++|+++.+++.-+.++.. .+..+|+.+... ....+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~-~~~~a~e~~~~a~~ty~~N~~~------------~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GF-KCVFASEIDKYAQKTYEANFGN------------KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHc-CC-eEEEEEeCCHHHHHHHHHhCCC------------CCCccChhhhhhhhCCCcCEEEec
Confidence 589999999999998776 43 4577899999988877766422 233445544322 12358999887
Q ss_pred cCCC
Q 028016 151 AAAP 154 (215)
Q Consensus 151 ~~~~ 154 (215)
.+++
T Consensus 67 ~PCq 70 (315)
T TIGR00675 67 FPCQ 70 (315)
T ss_pred CCCc
Confidence 7653
No 371
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=93.53 E-value=0.34 Score=39.75 Aligned_cols=101 Identities=22% Similarity=0.300 Sum_probs=60.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
...++.+||..|+|. |..+..+++..|. ..+++++.++...+.+++ .+....+...... ....... .....
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~-~~v~~~~~~~~~~~~l~~----~g~~~~~~~~~~~--~~~~~~~-~~~~~ 227 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGA-KRVIAVDIDDEKLAVARE----LGADDTINPKEED--VEKVREL-TEGRG 227 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----cCCCEEecCcccc--HHHHHHH-hCCCC
Confidence 367788999998776 7777788887652 238999888776665532 2211000000000 0000111 12235
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+++...........+.+.|+++|.++..
T Consensus 228 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 228 ADLVIEAAGSPATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 999997654445667889999999998764
No 372
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=93.48 E-value=1.3 Score=36.39 Aligned_cols=98 Identities=17% Similarity=0.158 Sum_probs=58.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
..++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++. +.. .-+.....+..+ .....
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~-~~v~~~~~~~~~~~~~~~~----g~~-----~~v~~~~~~~~~~l~~~~~~ 228 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGA-YPVIVSDPNEYRLELAKKM----GAT-----YVVNPFKEDVVKEVADLTDG 228 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHh----CCc-----EEEcccccCHHHHHHHhcCC
Confidence 45678888877764 6777777887652 2388888777666655431 211 001111111111 11122
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+...........+.+.|+++|.++..
T Consensus 229 ~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 229 EGVDVFLEMSGAPKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCCEEEECCCCHHHHHHHHHhhcCCCEEEEE
Confidence 46999987655445677889999999998764
No 373
>PTZ00357 methyltransferase; Provisional
Probab=93.46 E-value=0.69 Score=41.69 Aligned_cols=99 Identities=23% Similarity=0.198 Sum_probs=60.2
Q ss_pred EEEEEcCCccHHHHHHHHH---hCCCCeEEEEecChHHHHHHHHHH---HhhcccCcccCCCeEEEeCCCCCCCCC----
Q 028016 71 HALDIGSGTGYLTACFALM---VGPQGRAVGVEHIPELVVSSIQNI---EKSAAAPLLKEGSLSVHVGDGRKGWPE---- 140 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~---~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~~~~~~~~v~~~~~d~~~~~~~---- 140 (215)
.|+.+|+|-|-+.....+. .+-+.+++++|.++..+.....+. ..|........+.++++..|.......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999776655443 344468999999976544443332 223210001125699999998764322
Q ss_pred -------CCCccEEEEc----cCC----CCchHHHHHhcCC----CcE
Q 028016 141 -------FAPYDAIHVG----AAA----PEIPQALIDQLKP----GGR 169 (215)
Q Consensus 141 -------~~~~D~V~~~----~~~----~~~~~~~~~~Lk~----gG~ 169 (215)
.+++|+|++- ... ++.++.+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 1369999652 222 3444566777876 776
No 374
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=93.43 E-value=1 Score=37.02 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------CCC
Q 028016 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------GWP 139 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------~~~ 139 (215)
.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+.+ + +.. .+....... ...
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~---g~~--------~~~~~~~~~~~~~~~~~~ 240 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGP-ANIIVVDIDEAKLEAAKA-A---GAD--------VVVNGSDPDAAKRIIKAA 240 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-h---CCc--------EEecCCCccHHHHHHHHh
Confidence 4678898888875 7788888888753 478899888877766643 2 211 111111000 011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
. +.+|+++...........+.+.|+++|.++..
T Consensus 241 ~-~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 241 G-GGVDAVIDFVNNSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred C-CCCcEEEECCCCHHHHHHHHHHhhcCCeEEEE
Confidence 2 26899997665555678889999999998863
No 375
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=93.38 E-value=1 Score=37.45 Aligned_cols=99 Identities=20% Similarity=0.265 Sum_probs=60.1
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
+.++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ + +.. .-+.....+... .....
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G~-~~vi~~~~s~~~~~~~~~-~---g~~-----~v~~~~~~~~~~~l~~~~~~ 254 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFGA-SPIIAVDVRDEKLAKAKE-L---GAT-----HTVNAAKEDAVAAIREITGG 254 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-h---CCc-----eEecCCcccHHHHHHHHhCC
Confidence 46778888888764 7777788887653 348999888877766643 2 111 000100111100 01122
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028016 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+|+|+....-......+.+.|+++|.++...
T Consensus 255 ~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 255 RGVDVVVEALGKPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 569999876544336677889999999988753
No 376
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.21 E-value=0.31 Score=40.59 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=62.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC--CCC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~ 143 (215)
..++.+|+|.+|..|.-+..++..+.+.+++.++|.+....+..++.+.-.+. ..++...+|+.....+ ...
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~------~~~~~~~~df~~t~~~~~~~~ 284 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV------SIVESVEGDFLNTATPEKFRD 284 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC------CccccccccccCCCCcccccc
Confidence 67789999999999999999988876679999999999999998888877665 4666667787764211 123
Q ss_pred ccEEEEccCC
Q 028016 144 YDAIHVGAAA 153 (215)
Q Consensus 144 ~D~V~~~~~~ 153 (215)
...|++++++
T Consensus 285 v~~iL~Dpsc 294 (413)
T KOG2360|consen 285 VTYILVDPSC 294 (413)
T ss_pred eeEEEeCCCC
Confidence 4455666544
No 377
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=93.20 E-value=0.3 Score=40.63 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=62.2
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC--CCCC---CC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~--d~~~---~~ 138 (215)
.+.++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ + +.. .-+..... +... ..
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~---g~~-----~~v~~~~~~~~~~~~l~~~ 249 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGA-SRIIAVDINKDKFEKAKQ-L---GAT-----ECINPRDQDKPIVEVLTEM 249 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-h---CCC-----eecccccccchHHHHHHHH
Confidence 367788999998876 7777788888753 358889988887777643 2 211 01111111 1100 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcC-CCcEEEEE
Q 028016 139 PEFAPYDAIHVGAAAPEIPQALIDQLK-PGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk-~gG~lv~~ 173 (215)
.. +.+|+|+.............+.|+ ++|.++..
T Consensus 250 ~~-~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 250 TD-GGVDYAFEVIGSADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred hC-CCCcEEEECCCCHHHHHHHHHHhccCCCEEEEE
Confidence 12 469999876544456677888999 99998865
No 378
>PLN02702 L-idonate 5-dehydrogenase
Probab=93.09 E-value=1.9 Score=35.81 Aligned_cols=99 Identities=20% Similarity=0.204 Sum_probs=61.9
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE--eCCCCCC---C
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH--VGDGRKG---W 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~--~~d~~~~---~ 138 (215)
.+.++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ .+.. ..+.+. ..+.... .
T Consensus 178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~~~~~~~~ 247 (364)
T PLN02702 178 NIGPETNVLVMGAGPIGLVTMLAARAFGA-PRIVIVDVDDERLSVAKQ----LGAD-----EIVLVSTNIEDVESEVEEI 247 (364)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCCC-----EEEecCcccccHHHHHHHH
Confidence 366788999998875 7777888888754 458889988877766543 2211 011110 0111110 0
Q ss_pred --CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 139 --PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+|+....-........+.|+++|.++..
T Consensus 248 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 248 QKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred hhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 11246899987655445678889999999998754
No 379
>PRK11524 putative methyltransferase; Provisional
Probab=93.09 E-value=0.16 Score=40.91 Aligned_cols=51 Identities=20% Similarity=0.100 Sum_probs=36.5
Q ss_pred CCeEEEeCCCCCCC--CCCCCccEEEEccCCC----------------------CchHHHHHhcCCCcEEEEEeC
Q 028016 125 GSLSVHVGDGRKGW--PEFAPYDAIHVGAAAP----------------------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 125 ~~v~~~~~d~~~~~--~~~~~~D~V~~~~~~~----------------------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
.+..++++|..+.. ...++||+|++++++. .++.++.++|||||.+++.+.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 45577888876532 2337899999988752 234678899999999998644
No 380
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=92.88 E-value=1.3 Score=37.15 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=60.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC---CCCC---C
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRK---G 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~---d~~~---~ 137 (215)
.+.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .-+..... +... .
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~-~~vi~~~~~~~~~~~~~~----~g~~-----~~v~~~~~~~~~~~~~v~~ 269 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGA-SKVIAFEISEERRNLAKE----MGAD-----YVFNPTKMRDCLSGEKVME 269 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----cCCC-----EEEcccccccccHHHHHHH
Confidence 366788998888876 7777778887652 379999988876555543 2211 00111100 1100 1
Q ss_pred CCCCCCccEEEEccCC-CCchHHHHHhcCCCcEEEEE
Q 028016 138 WPEFAPYDAIHVGAAA-PEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~-~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+..... ........+.|+++|.++..
T Consensus 270 ~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 270 VTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred hcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEE
Confidence 1122469999876543 23567788999999999864
No 381
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.85 E-value=0.45 Score=39.23 Aligned_cols=74 Identities=22% Similarity=0.189 Sum_probs=52.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC--C-Ccc
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--A-PYD 145 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~-~~D 145 (215)
..+++|+.||.|.+...+... |. .-+.++|+++.+++.-+.++.. -.++..|........ . .+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf-~~~~a~Eid~~a~~ty~~n~~~-----------~~~~~~di~~~~~~~~~~~~~D 69 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GF-EIVFANEIDPPAVATYKANFPH-----------GDIILGDIKELDGEALRKSDVD 69 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CC-eEEEEEecCHHHHHHHHHhCCC-----------CceeechHhhcChhhccccCCC
Confidence 468999999999999888776 44 5788999999988876665431 344555554322211 1 789
Q ss_pred EEEEccCCCC
Q 028016 146 AIHVGAAAPE 155 (215)
Q Consensus 146 ~V~~~~~~~~ 155 (215)
+++..++++.
T Consensus 70 vligGpPCQ~ 79 (328)
T COG0270 70 VLIGGPPCQD 79 (328)
T ss_pred EEEeCCCCcc
Confidence 9999988754
No 382
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=92.84 E-value=0.67 Score=38.54 Aligned_cols=100 Identities=17% Similarity=0.080 Sum_probs=62.3
Q ss_pred CCCCCEEEEEcCCc--cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC--C
Q 028016 66 LKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--F 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~ 141 (215)
.+++.+||-+|.++ |..+..+++..+ ...+..-.+.+..+.+++ .+.+. -+++...+..+.... .
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~----lGAd~-----vvdy~~~~~~e~~kk~~~ 223 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKK----LGADE-----VVDYKDENVVELIKKYTG 223 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHH----cCCcE-----eecCCCHHHHHHHHhhcC
Confidence 67788999998886 577778888874 245555667777777654 33321 122222222221111 3
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEEeCC
Q 028016 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
..||+|+....-..........++.||..++.+..
T Consensus 224 ~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~~ 258 (347)
T KOG1198|consen 224 KGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLVG 258 (347)
T ss_pred CCccEEEECCCCCccccchhhhccCCceEEEEecc
Confidence 67999998877766666667777777766665543
No 383
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=92.71 E-value=1.8 Score=35.44 Aligned_cols=97 Identities=20% Similarity=0.287 Sum_probs=59.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
..++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+. ..+.....+... .....
T Consensus 165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~----~g~------~~~~~~~~~~~~~l~~~~~~ 233 (344)
T cd08284 165 VRPGDTVAVIGCGPVGLCAVLSAQVLGA-ARVFAVDPVPERLERAAA----LGA------EPINFEDAEPVERVREATEG 233 (344)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCC-ceEEEEcCCHHHHHHHHH----hCC------eEEecCCcCHHHHHHHHhCC
Confidence 56788998888765 6677777777642 368888877766655543 221 001110111100 01122
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+.............+.|+++|.++..
T Consensus 234 ~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 234 RGADVVLEAVGGAAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred CCCCEEEECCCCHHHHHHHHHhcccCCEEEEE
Confidence 46999987665555677889999999998764
No 384
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=92.67 E-value=0.34 Score=39.63 Aligned_cols=97 Identities=22% Similarity=0.209 Sum_probs=60.2
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC---CCCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR---KGWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~---~~~~~~ 141 (215)
..++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .+-....+.. ......
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~----~g~~------~~~~~~~~~~~~i~~~~~~ 233 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTP-ATVIAVDRSEEALKLAER----LGAD------HVLNASDDVVEEVRELTGG 233 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHHH----hCCc------EEEcCCccHHHHHHHHhCC
Confidence 56688999999775 6666777777643 578888888876665532 2211 1100000100 011122
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+.........+.+.+.|+++|.++..
T Consensus 234 ~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 234 RGADAVIDFVGSDETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEE
Confidence 46999997665545677888999999999864
No 385
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=92.61 E-value=2 Score=35.41 Aligned_cols=95 Identities=15% Similarity=0.056 Sum_probs=59.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC---C---CC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR---K---GW 138 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~---~---~~ 138 (215)
+.++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ .+. .. ++..... . ..
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~------~~--v~~~~~~~~~~~~~~~ 238 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAARLKNP-KKLIVLDLKDERLALARK----FGA------DV--VLNPPEVDVVEKIKEL 238 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCHHHHHHHHH----cCC------cE--EecCCCcCHHHHHHHH
Confidence 66788888888765 7777888888764 468889988876665543 221 11 1111100 0 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+++....-......+.+.++++|.++..
T Consensus 239 ~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 239 TGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred hCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 12135899987655444567789999999998764
No 386
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.41 E-value=0.023 Score=41.17 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=34.8
Q ss_pred CCCCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEEeCCCceeEEEE
Q 028016 139 PEFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPVGNIFQDLKVV 184 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~~~~~~~~~~~ 184 (215)
..+++.|+|++...++|+- +.+++.|||||+|-+++|+.......+
T Consensus 43 F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y 96 (185)
T COG4627 43 FEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLY 96 (185)
T ss_pred CCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHH
Confidence 3447899998887776643 678999999999999999865433333
No 387
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=92.23 E-value=2.4 Score=35.22 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=61.0
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC---CCCC---C
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRK---G 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~---d~~~---~ 137 (215)
.+.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ + +.. .++.. +... .
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G~-~~Vi~~~~~~~~~~~~~~-~---g~~--------~vv~~~~~~~~~~l~~ 245 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGA-SRIIAVDPVPEKLELARR-F---GAT--------HTVNASEDDAVEAVRD 245 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH-h---CCe--------EEeCCCCccHHHHHHH
Confidence 356788998888864 7777888887652 358899888877666532 2 111 11111 1100 1
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+++....-........+.|+++|.++..
T Consensus 246 ~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 246 LTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred HcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEE
Confidence 112256999987655455667889999999998864
No 388
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=92.15 E-value=2 Score=35.18 Aligned_cols=99 Identities=21% Similarity=0.207 Sum_probs=60.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
..++.+|+-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .-+.....+... .....
T Consensus 161 ~~~g~~vlV~~~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~----lg~~-----~~~~~~~~~~~~~~~~~~~~ 230 (341)
T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVGA-RHVVITDVNEYRLELARK----MGAT-----RAVNVAKEDLRDVMAELGMT 230 (341)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----hCCc-----EEecCccccHHHHHHHhcCC
Confidence 34678888888775 7777788887653 368888877776665543 2211 000111111100 11222
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028016 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+|+|+.............+.|+++|.++...
T Consensus 231 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 231 EGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEe
Confidence 568999985554556677889999999988864
No 389
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.12 E-value=0.46 Score=38.68 Aligned_cols=94 Identities=21% Similarity=0.217 Sum_probs=65.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCCC----C-
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKG----W- 138 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~~----~- 138 (215)
+++++++.-+|.|. |.....-++..|. ++++++|++++-.+.|++. +.. +++.. |.... .
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GA-srIIgvDiN~~Kf~~ak~f----GaT--------e~iNp~d~~~~i~evi~ 256 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGA-SRIIGVDINPDKFEKAKEF----GAT--------EFINPKDLKKPIQEVII 256 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCc-ccEEEEecCHHHHHHHHhc----Ccc--------eecChhhccccHHHHHH
Confidence 78999999999998 6555566777555 8999999999999998752 221 22221 22210 0
Q ss_pred -CCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEE
Q 028016 139 -PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 172 (215)
Q Consensus 139 -~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~ 172 (215)
..++.+|.-+-.....+.+.++....+.| |.-++
T Consensus 257 EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~ 292 (375)
T KOG0022|consen 257 EMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVV 292 (375)
T ss_pred HHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEE
Confidence 12367888887777777778888888888 76665
No 390
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.11 E-value=0.97 Score=35.10 Aligned_cols=94 Identities=14% Similarity=0.137 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCCccHHH--HHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 67 KPGMHALDIGSGTGYLT--ACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~--~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.++.+||-+|.|.-..- ..+++. |..-.|++-+++++..+.++. .+++++..+...... ..+
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVap~i~~el~~l~~~-------------~~i~~~~r~~~~~dl--~g~ 86 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKK-GCYVYILSKKFSKEFLDLKKY-------------GNLKLIKGNYDKEFI--KDK 86 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCCCHHHHHHHhC-------------CCEEEEeCCCChHHh--CCC
Confidence 34679999999974332 223333 433344444777766554321 578888776654322 468
Q ss_pred cEEEEccCCCCchHHHHHhcCCCcEEEEEeCC
Q 028016 145 DAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
++|++...-+.+-+.+....+..|.++....+
T Consensus 87 ~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 87 HLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred cEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 89998888877888888888877777665543
No 391
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.06 E-value=2.8 Score=34.33 Aligned_cols=99 Identities=17% Similarity=0.213 Sum_probs=60.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
...++.+|+-.|+|. |..+..+++..|. ..+++++.++...+.+++ .+.. .-+.....+... ....
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~ga~-----~v~~~~~~~~~~~i~~~~~ 234 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGA-ERIIAMSRHEDRQALARE----FGAT-----DIVAERGEEAVARVRELTG 234 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCCc-----eEecCCcccHHHHHHHhcC
Confidence 356778888888876 7788888888753 358999988766555543 2211 001110001000 0112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+|+++....-......+.+.++++|.++..
T Consensus 235 ~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 235 GVGADAVLECVGTQESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhhccCCEEEEe
Confidence 246899987654445677889999999998864
No 392
>PRK10458 DNA cytosine methylase; Provisional
Probab=92.05 E-value=0.96 Score=39.17 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=34.7
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~ 113 (215)
..+++|+.||.|+++..+-.. |. .-+.++|+++.+.+.-+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~-~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GG-QCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CC-EEEEEEechHHHHHHHHHHc
Confidence 468999999999999999766 43 46788999998777666654
No 393
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=91.73 E-value=2.5 Score=34.56 Aligned_cols=94 Identities=22% Similarity=0.309 Sum_probs=60.2
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCe-EEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------C
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 137 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------~ 137 (215)
+.++.+||-.|+|. |..+..+++..| .+ ++++..++...+.+++ + +.. .+...+-.. .
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g--~~~v~~~~~s~~~~~~~~~-~---g~~--------~~~~~~~~~~~~~i~~ 228 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASG--ARKVIVSDLNEFRLEFAKK-L---GAD--------YTIDAAEEDLVEKVRE 228 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH-h---CCc--------EEecCCccCHHHHHHH
Confidence 67788998888764 777777888765 45 8888888887766542 2 211 111111000 0
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+...........+.+.|+++|.++..
T Consensus 229 ~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 229 LTDGRGADVVIVATGSPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred HhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 112245899987655455667788999999998874
No 394
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=91.73 E-value=2.7 Score=34.31 Aligned_cols=99 Identities=25% Similarity=0.285 Sum_probs=59.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC------CC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR------KG 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~------~~ 137 (215)
.+.++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++. +.. .-+.....+.. ..
T Consensus 158 ~~~~g~~VlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~~----g~~-----~~i~~~~~~~~~~~~~~~~ 227 (341)
T cd08262 158 RLTPGEVALVIGCGPIGLAVIAALKARGV-GPIVASDFSPERRALALAM----GAD-----IVVDPAADSPFAAWAAELA 227 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHc----CCc-----EEEcCCCcCHHHHHHHHHH
Confidence 367788999888764 6677777877653 4588888888877766542 110 00010000000 00
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+....-........+.++++|.++..
T Consensus 228 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 263 (341)
T cd08262 228 RAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVV 263 (341)
T ss_pred HhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 112246999986544333567778899999998864
No 395
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=91.69 E-value=0.36 Score=39.18 Aligned_cols=158 Identities=18% Similarity=0.173 Sum_probs=82.7
Q ss_pred HHHHHHhCcCcCCCCCCCCCCcCCCccccCCc------ccchhHHHHHHHHHHHhcC--C---------CCCEEEEEcCC
Q 028016 16 VSEVMETIDRACFVPDGTPPYVDSPMAIGYNA------TISAPHMHATCLQLLEENL--K---------PGMHALDIGSG 78 (215)
Q Consensus 16 ~~~~~~~~~r~~~~~~~~~~y~~~~~~~~~~~------~~~~~~~~~~~l~~l~~~~--~---------~~~~vLdiG~G 78 (215)
+.+.+++|....|......+|.+...-..+.. .+.+..+...+.+.+.... . +..+||.||-|
T Consensus 17 l~~~iQ~VK~~LYnRDf~~AF~~~~~L~AYA~RWSPsRAL~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGG 96 (315)
T PF11312_consen 17 LQELIQEVKGHLYNRDFAAAFGDEEKLEAYAARWSPSRALAYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGG 96 (315)
T ss_pred HHHHHHHHHHHHhcchHHHHhCChhhhhhheeccCHHHHHHHHHHHHHHHHHHHhhccccccccccccccCceEEEECCC
Confidence 66667777665555444445555443333322 1222222333333222111 1 12599999999
Q ss_pred ccHHHHHHHHHh-C------------------CCCeEEEEecCh--HHHHHHHHHHHhhccc---------Ccc--cCCC
Q 028016 79 TGYLTACFALMV-G------------------PQGRAVGVEHIP--ELVVSSIQNIEKSAAA---------PLL--KEGS 126 (215)
Q Consensus 79 ~G~~~~~l~~~~-~------------------~~~~v~~~D~s~--~~~~~a~~~~~~~~~~---------~~~--~~~~ 126 (215)
-|.-..+++..+ . +...++.+|+.+ ..++.....+...... ... +.-+
T Consensus 97 AGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~~~~~~~~~~ 176 (315)
T PF11312_consen 97 AGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANWPLIEPDRFN 176 (315)
T ss_pred hHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccccccCCcccee
Confidence 998888777766 0 113899999876 4455544444433000 001 1135
Q ss_pred eEEEeCCCCCCCCCC-------CCccEEEEccCCC-----------CchHHHHHhcCCCcEEEEE
Q 028016 127 LSVHVGDGRKGWPEF-------APYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 127 v~~~~~d~~~~~~~~-------~~~D~V~~~~~~~-----------~~~~~~~~~Lk~gG~lv~~ 173 (215)
+.|.+.|+.....+. ...++|..-..+. .++..+-..++||-.|++.
T Consensus 177 ~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 177 VSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred eeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 677888876543311 1244442222222 2334677889999988874
No 396
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.65 E-value=0.73 Score=38.81 Aligned_cols=75 Identities=20% Similarity=0.147 Sum_probs=48.8
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC---CCCCcc
Q 028016 70 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFAPYD 145 (215)
Q Consensus 70 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~D 145 (215)
++||-||||. |......+.+-+. .+|+..|.+...++.+..... .+++..+.|+.+... -...+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~----------~~v~~~~vD~~d~~al~~li~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIG----------GKVEALQVDAADVDALVALIKDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhcc----------ccceeEEecccChHHHHHHHhcCC
Confidence 5799999976 6655555433233 799999999888777654322 367777777765311 113569
Q ss_pred EEEEccCCCC
Q 028016 146 AIHVGAAAPE 155 (215)
Q Consensus 146 ~V~~~~~~~~ 155 (215)
+|+...+...
T Consensus 71 ~VIn~~p~~~ 80 (389)
T COG1748 71 LVINAAPPFV 80 (389)
T ss_pred EEEEeCCchh
Confidence 8887766543
No 397
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=91.48 E-value=3.4 Score=33.10 Aligned_cols=95 Identities=20% Similarity=0.187 Sum_probs=59.0
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCe-EEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC---CCC---
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD---GRK--- 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d---~~~--- 136 (215)
.+.++.+||-.|+|. |..+..+++..| .+ ++++..++...+.+++ .+.. .+.... ...
T Consensus 126 ~~~~~~~vlI~g~g~vg~~~~~la~~~g--~~~v~~~~~~~~~~~~~~~----~g~~--------~~~~~~~~~~~~~l~ 191 (312)
T cd08269 126 WIRAGKTVAVIGAGFIGLLFLQLAAAAG--ARRVIAIDRRPARLALARE----LGAT--------EVVTDDSEAIVERVR 191 (312)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCCc--------eEecCCCcCHHHHHH
Confidence 356788888888754 667777777765 45 8888887776664432 2211 111111 100
Q ss_pred CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 137 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.......+|+++.............+.|+++|.++..
T Consensus 192 ~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 192 ELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIF 228 (312)
T ss_pred HHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 0112246999997755545667788999999998864
No 398
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=91.46 E-value=2.9 Score=34.06 Aligned_cols=97 Identities=23% Similarity=0.256 Sum_probs=60.2
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe-EEEe-CCCCCCC-C
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHV-GDGRKGW-P 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v-~~~~-~d~~~~~-~ 139 (215)
.++++.+||-.|+|. |..+..+++.. | .++++++.+++..+.+++ + +.. .+ .... .+..... .
T Consensus 159 ~~~~g~~vlV~g~g~vG~~~~~la~~~~g--~~v~~~~~~~~~~~~~~~-~---g~~------~v~~~~~~~~~~~~v~~ 226 (338)
T PRK09422 159 GIKPGQWIAIYGAGGLGNLALQYAKNVFN--AKVIAVDINDDKLALAKE-V---GAD------LTINSKRVEDVAKIIQE 226 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCC--CeEEEEeCChHHHHHHHH-c---CCc------EEecccccccHHHHHHH
Confidence 367889999999765 77777788863 4 579999999988887743 2 211 11 1000 0100000 0
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+.+|.++.........+.+.+.|+++|.++..
T Consensus 227 ~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 227 KTGGAHAAVVTAVAKAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred hcCCCcEEEEeCCCHHHHHHHHHhccCCCEEEEE
Confidence 0124785554444555678889999999998864
No 399
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=91.18 E-value=2.2 Score=32.37 Aligned_cols=111 Identities=19% Similarity=0.176 Sum_probs=68.8
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCC
Q 028016 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 126 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~ 126 (215)
.+|..+-.+.+.+- ..+ ...|+|+|+-.|..++..|... |...+|.++|++-.-++-+... .+.
T Consensus 53 k~p~D~~~yQellw-~~~-P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------~p~ 119 (237)
T COG3510 53 KSPSDMWNYQELLW-ELQ-PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------VPD 119 (237)
T ss_pred CCHHHHHHHHHHHH-hcC-CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------CCC
Confidence 45555555555554 244 4789999999998777766533 4347999999987665544321 168
Q ss_pred eEEEeCCCCCCCC------CCCCccEEEEccCCCC----ch---HHHHHhcCCCcEEEEE
Q 028016 127 LSVHVGDGRKGWP------EFAPYDAIHVGAAAPE----IP---QALIDQLKPGGRMVIP 173 (215)
Q Consensus 127 v~~~~~d~~~~~~------~~~~~D~V~~~~~~~~----~~---~~~~~~Lk~gG~lv~~ 173 (215)
+.++.++..+..- ..+.|--|+......| ++ +.+..+|..|-++++.
T Consensus 120 i~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 120 ILFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred eEEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEe
Confidence 9999988765211 1133445544443333 22 3456778888888874
No 400
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.99 E-value=1.1 Score=34.77 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=45.7
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+|+-+|||. |......+.+.|. ++++.+|.+. ...+.+++++++... .-+++
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np-----~~~i~ 94 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGV-GKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINP-----DVEIE 94 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCC-----CCEEE
Confidence 57999999996 6655555555465 6888886443 334555666655321 12344
Q ss_pred EEeCCCCCCC--CCCCCccEEEEccCCCC
Q 028016 129 VHVGDGRKGW--PEFAPYDAIHVGAAAPE 155 (215)
Q Consensus 129 ~~~~d~~~~~--~~~~~~D~V~~~~~~~~ 155 (215)
.....+.... .....+|+|++......
T Consensus 95 ~~~~~i~~~~~~~~~~~~DvVi~~~d~~~ 123 (228)
T cd00757 95 AYNERLDAENAEELIAGYDLVLDCTDNFA 123 (228)
T ss_pred EecceeCHHHHHHHHhCCCEEEEcCCCHH
Confidence 4443332110 01146999987765443
No 401
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=90.93 E-value=4.6 Score=33.68 Aligned_cols=96 Identities=25% Similarity=0.361 Sum_probs=59.3
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
...++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+. ..+.....+... ....
T Consensus 173 ~~~~g~~vlI~g~g~vg~~~~~~a~~~G~-~~vi~~~~~~~~~~~~~~----~g~------~~v~~~~~~~~~~i~~~~~ 241 (375)
T cd08282 173 GVQPGDTVAVFGAGPVGLMAAYSAILRGA-SRVYVVDHVPERLDLAES----IGA------IPIDFSDGDPVEQILGLEP 241 (375)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCC------eEeccCcccHHHHHHHhhC
Confidence 356788888888875 7777788887652 368889988877776653 111 001000001000 0112
Q ss_pred CCCccEEEEccCCCC-----------chHHHHHhcCCCcEEEE
Q 028016 141 FAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~-----------~~~~~~~~Lk~gG~lv~ 172 (215)
..+|+|+....... ....+.+.|+++|.++.
T Consensus 242 -~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 242 -GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred -CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 45899987654432 35778899999999864
No 402
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.73 E-value=1.4 Score=36.62 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=46.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh---------------------HHHHHHHHHHHhhcccCcccCCC
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP---------------------ELVVSSIQNIEKSAAAPLLKEGS 126 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~---------------------~~~~~a~~~~~~~~~~~~~~~~~ 126 (215)
+.+|+-+|||. |......+.+.|. ++++.+|.+. .-.+.+++.+..... .-.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp-----~v~ 97 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINS-----EVE 97 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCC-----CcE
Confidence 57899999996 6554444444354 6899999874 234455566655321 134
Q ss_pred eEEEeCCCCCCCC--CCCCccEEEEccCC
Q 028016 127 LSVHVGDGRKGWP--EFAPYDAIHVGAAA 153 (215)
Q Consensus 127 v~~~~~d~~~~~~--~~~~~D~V~~~~~~ 153 (215)
++....+...... ....+|+|+....-
T Consensus 98 i~~~~~~~~~~~~~~~~~~~DlVid~~D~ 126 (338)
T PRK12475 98 IVPVVTDVTVEELEELVKEVDLIIDATDN 126 (338)
T ss_pred EEEEeccCCHHHHHHHhcCCCEEEEcCCC
Confidence 5555555432111 12469999877654
No 403
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.70 E-value=2.2 Score=33.94 Aligned_cols=72 Identities=25% Similarity=0.285 Sum_probs=55.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.+.+++...|+|+..|+.+-.+.++. -.|+++|.-+-+ + .+ .....++-...|.....+...+.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~ma-~----sL--------~dtg~v~h~r~DGfk~~P~r~~i 271 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGPMA-Q----SL--------MDTGQVTHLREDGFKFRPTRSNI 271 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcc---eEEEEeccchhh-h----hh--------hcccceeeeeccCcccccCCCCC
Confidence 46889999999999999999998874 789999964422 1 11 12267888889988877766889
Q ss_pred cEEEEccC
Q 028016 145 DAIHVGAA 152 (215)
Q Consensus 145 D~V~~~~~ 152 (215)
|-.+|+..
T Consensus 272 dWmVCDmV 279 (358)
T COG2933 272 DWMVCDMV 279 (358)
T ss_pred ceEEeehh
Confidence 99888864
No 404
>PRK08618 ornithine cyclodeaminase; Validated
Probab=90.62 E-value=5.5 Score=32.80 Aligned_cols=95 Identities=19% Similarity=0.083 Sum_probs=54.3
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE-eCCCCCCCCCCCCc
Q 028016 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH-VGDGRKGWPEFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~ 144 (215)
+...++.-+|||. |...........+-.++..++.+++..+...+.+... ..+.+. ..+..+.. ...
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~---~~a 193 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK--------FNTEIYVVNSADEAI---EEA 193 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh--------cCCcEEEeCCHHHHH---hcC
Confidence 3457899999996 5544433222223378999999988776655555431 122222 22222212 458
Q ss_pred cEEEEccCCCCchHHHHHhcCCCcEEEEEeC
Q 028016 145 DAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
|+|++..+..+-.-. ..|+|| ..+..++
T Consensus 194 DiVi~aT~s~~p~i~--~~l~~G-~hV~~iG 221 (325)
T PRK08618 194 DIIVTVTNAKTPVFS--EKLKKG-VHINAVG 221 (325)
T ss_pred CEEEEccCCCCcchH--HhcCCC-cEEEecC
Confidence 999877766543222 788885 4455443
No 405
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.62 E-value=0.74 Score=32.84 Aligned_cols=100 Identities=15% Similarity=0.064 Sum_probs=54.6
Q ss_pred EEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeEEE
Q 028016 71 HALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 71 ~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
+|+-+|||. |......+.+.|. ++++.+|.+. ...+.++++++.... .-+++..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p-----~v~i~~~ 74 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNP-----GVNVTAV 74 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCC-----CcEEEEE
Confidence 478899985 6544443334344 6899998662 223444555544321 1233333
Q ss_pred eCCCCCCC--CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEeCC
Q 028016 131 VGDGRKGW--PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 131 ~~d~~~~~--~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
........ .....||+|++..........+.+.++..|.-++....
T Consensus 75 ~~~~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 75 PEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred eeecChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 33332211 11257999998877655445566666666666665544
No 406
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=90.61 E-value=0.83 Score=37.27 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=50.8
Q ss_pred EEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-C------CCCCcc
Q 028016 73 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-P------EFAPYD 145 (215)
Q Consensus 73 LdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~------~~~~~D 145 (215)
+|||+|...+--.+-... .+-...++|+++..+..|+.++.++... ..+.+++....... . .+..||
T Consensus 107 iDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~ls-----s~ikvV~~~~~ktll~d~~~~~~e~~yd 180 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNNLS-----SLIKVVKVEPQKTLLMDALKEESEIIYD 180 (419)
T ss_pred eeccCchhhhHHhhhchh-ccceeeeeeccccccchhhccccccccc-----cceeeEEecchhhcchhhhccCccceee
Confidence 799888765544443332 2368899999999999999999888776 45665554332211 1 124599
Q ss_pred EEEEccCC
Q 028016 146 AIHVGAAA 153 (215)
Q Consensus 146 ~V~~~~~~ 153 (215)
.+.|++++
T Consensus 181 FcMcNPPF 188 (419)
T KOG2912|consen 181 FCMCNPPF 188 (419)
T ss_pred EEecCCch
Confidence 99998875
No 407
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=90.58 E-value=0.41 Score=32.12 Aligned_cols=78 Identities=12% Similarity=0.128 Sum_probs=51.1
Q ss_pred EEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEcc
Q 028016 72 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGA 151 (215)
Q Consensus 72 vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~ 151 (215)
|| +.||.|..|..+++.+ ++.+++.+. .+++......+.....+.+|+|+..+
T Consensus 3 Il-l~C~~GaSSs~la~km-------------------~~~a~~~gi-------~~~i~a~~~~e~~~~~~~~Dvill~P 55 (99)
T cd05565 3 VL-VLCAGGGTSGLLANAL-------------------NKGAKERGV-------PLEAAAGAYGSHYDMIPDYDLVILAP 55 (99)
T ss_pred EE-EECCCCCCHHHHHHHH-------------------HHHHHHCCC-------cEEEEEeeHHHHHHhccCCCEEEEcC
Confidence 44 5578886666666554 233333332 35555555444322235799999999
Q ss_pred CCCCchHHHHHhcCCCcEEEEEeCC
Q 028016 152 AAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 152 ~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
...+..+.+.+.+.+.|.-+..++.
T Consensus 56 Qv~~~~~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 56 QMASYYDELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred hHHHHHHHHHHHhhhcCCCEEEeCH
Confidence 9999999999999998887766653
No 408
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=90.54 E-value=0.76 Score=33.21 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=26.3
Q ss_pred EEcCCcc--HHHHHHH-HHhCCCCeEEEEecChHHHHHHHHH
Q 028016 74 DIGSGTG--YLTACFA-LMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 74 diG~G~G--~~~~~l~-~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
|+|+..| ..+..++ +..++..+++++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6665554 3445668999999999999988888
No 409
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=90.47 E-value=4.8 Score=33.76 Aligned_cols=101 Identities=20% Similarity=0.142 Sum_probs=60.0
Q ss_pred CCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE-EEeC-C--------
Q 028016 66 LKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS-VHVG-D-------- 133 (215)
Q Consensus 66 ~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~-~~~~-d-------- 133 (215)
+.++.+||-.|+ |. |..+..+++..| .++++++.++...+.+++ +..... +...... +... +
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G--~~vv~~~~s~~~~~~~~~-~G~~~~---i~~~~~~~~~~~~~~~~~~~~~ 264 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAG--ANPVAVVSSEEKAEYCRA-LGAEGV---INRRDFDHWGVLPDVNSEAYTA 264 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH-cCCCEE---Ecccccccccccccccchhhhh
Confidence 567889999997 44 778888888875 567788888888877765 221000 0000000 0000 0
Q ss_pred -------CCC---CCCCCC-CccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 134 -------GRK---GWPEFA-PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 134 -------~~~---~~~~~~-~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
... ...... .+|+|+..... .......+.++++|.++..
T Consensus 265 ~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 265 WTKEARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred hhhccchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHhccCCEEEEE
Confidence 000 011112 58999876543 4567788999999999874
No 410
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=90.42 E-value=4.2 Score=33.28 Aligned_cols=92 Identities=22% Similarity=0.222 Sum_probs=56.0
Q ss_pred CCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC----CCCC
Q 028016 66 LKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR----KGWP 139 (215)
Q Consensus 66 ~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~----~~~~ 139 (215)
+.++.+||-.|+ |. |..+..+++..| .++++++.+. ..+.+++ .+. . .+...+.. ....
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~~~~-~~~~~~~----~g~------~--~~~~~~~~~~~~~~~~ 239 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRG--AIVIAVAGAA-KEEAVRA----LGA------D--TVILRDAPLLADAKAL 239 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCch-hhHHHHh----cCC------e--EEEeCCCccHHHHHhh
Confidence 677899999998 43 777788888876 4677777543 4444432 221 1 11111100 0011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
....+|+|+....- ...+...+.|+++|.++..
T Consensus 240 ~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 240 GGEPVDVVADVVGG-PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCCCCcEEEecCCH-HHHHHHHHHhccCCEEEEe
Confidence 22469999866543 4567789999999998753
No 411
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=90.36 E-value=0.61 Score=31.05 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=47.2
Q ss_pred EcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC
Q 028016 75 IGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP 154 (215)
Q Consensus 75 iG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~ 154 (215)
+.||+|..|..+++.+ ++.+.+.+. .+++...+..+.......||+|+..+.+.
T Consensus 4 ~~Cg~G~sTS~~~~ki-------------------~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~Diil~~Pqv~ 57 (96)
T cd05564 4 LVCSAGMSTSILVKKM-------------------KKAAEKRGI-------DAEIEAVPESELEEYIDDADVVLLGPQVR 57 (96)
T ss_pred EEcCCCchHHHHHHHH-------------------HHHHHHCCC-------ceEEEEecHHHHHHhcCCCCEEEEChhHH
Confidence 5588887666555443 334444332 35666666544322225799999999988
Q ss_pred CchHHHHHhcCCCcEEEEEeCC
Q 028016 155 EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 155 ~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
...+.+.+...+.+.=+..++.
T Consensus 58 ~~~~~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 58 YMLDEVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred HHHHHHHHHhccCCCcEEEcCh
Confidence 8888888766666655554443
No 412
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=90.30 E-value=3.6 Score=33.67 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=60.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CCCCC---CCCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRK---GWPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d~~~---~~~~ 140 (215)
..++.+||-.|+|. |..+..+++..| .++++++.+++..+.+++ + +.. .-+.... .+... ....
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~-~---g~~-----~~i~~~~~~~~~~~~~~~~~ 231 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASALG--ARVIAVDIDDDKLELARE-L---GAV-----ATVNASEVEDVAAAVRDLTG 231 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH-h---CCC-----EEEccccchhHHHHHHHHhC
Confidence 56778999999765 777777888765 578999888887776643 2 211 0011111 11110 0112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+.+|+|+.............+.|+++|.++..
T Consensus 232 -~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 232 -GGAHVSVDALGIPETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred -CCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Confidence 26999987654445567788999999998864
No 413
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.29 E-value=1.8 Score=33.18 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCc-cHH-HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 68 PGMHALDIGSGT-GYL-TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~-~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
.+.+||-+|.|. |.- ...+.+. | ..|+.++.+.. ....+.... .++.++..+..... ...+|
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~-g--a~VtVvsp~~~--~~l~~l~~~---------~~i~~~~~~~~~~d--l~~~~ 71 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKA-G--AQLRVIAEELE--SELTLLAEQ---------GGITWLARCFDADI--LEGAF 71 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHC-C--CEEEEEcCCCC--HHHHHHHHc---------CCEEEEeCCCCHHH--hCCcE
Confidence 367999999987 433 2233333 3 67888876543 111111111 47888887765322 25689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEEeCC
Q 028016 146 AIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++......+-..+....+..|.++-...+
T Consensus 72 lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 72 LVIAATDDEELNRRVAHAARARGVPVNVVDD 102 (205)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCEEEECCC
Confidence 9998888877777788888888888754443
No 414
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=89.85 E-value=0.23 Score=36.31 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=50.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHH-HHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccE
Q 028016 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS-SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~-a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~ 146 (215)
+++++.+|+..-..=....+. |. .++..+|.++--++. .+.++. .+...++...+. -.++||.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-GA-~~iltveyn~L~i~~~~~dr~s-------------si~p~df~~~~~~y~~~fD~ 66 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-GA-AKILTVEYNKLEIQEEFRDRLS-------------SILPVDFAKNWQKYAGSFDF 66 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-CC-ceEEEEeecccccCcccccccc-------------cccHHHHHHHHHHhhccchh
Confidence 567888888865544444443 43 678888876522111 011100 011111111110 1156777
Q ss_pred EEEccCCCC-----------------chHHHHHhcCCCcEEEEEeCCCc
Q 028016 147 IHVGAAAPE-----------------IPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 147 V~~~~~~~~-----------------~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
+.+...+++ .+..+.++||+||.|++.+|-+.
T Consensus 67 ~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 67 AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 655554432 22467899999999999887653
No 415
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.66 E-value=1.8 Score=29.76 Aligned_cols=83 Identities=19% Similarity=0.188 Sum_probs=58.3
Q ss_pred CEEEEEcCCcc-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCccEE
Q 028016 70 MHALDIGSGTG-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAI 147 (215)
Q Consensus 70 ~~vLdiG~G~G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~V 147 (215)
.+|.|+|-|.= ..+..++++ | ..++++|+++. .+. ..+.+...|..+.... -...|+|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~-g--~dv~atDI~~~---~a~--------------~g~~~v~DDitnP~~~iY~~A~lI 74 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAER-G--FDVLATDINEK---TAP--------------EGLRFVVDDITNPNISIYEGADLI 74 (129)
T ss_pred CcEEEEccchHHHHHHHHHHc-C--CcEEEEecccc---cCc--------------ccceEEEccCCCccHHHhhCccce
Confidence 49999999874 455556655 4 68999999886 111 3678888888764332 2468999
Q ss_pred EEccCCCCchHHHHHhcCC-CcEEEE
Q 028016 148 HVGAAAPEIPQALIDQLKP-GGRMVI 172 (215)
Q Consensus 148 ~~~~~~~~~~~~~~~~Lk~-gG~lv~ 172 (215)
++.-+.+++...+.++-+. |..+++
T Consensus 75 YSiRpppEl~~~ildva~aVga~l~I 100 (129)
T COG1255 75 YSIRPPPELQSAILDVAKAVGAPLYI 100 (129)
T ss_pred eecCCCHHHHHHHHHHHHhhCCCEEE
Confidence 9999998888877766544 444444
No 416
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.65 E-value=2.8 Score=33.88 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CCCCCCCCCCCCcc
Q 028016 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~D 145 (215)
.+.+|+-+|.|. |......++.+| .+|+.++.++...+.+. ..+ ..... .+..+. ...+|
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G--~~V~v~~R~~~~~~~~~----~~g---------~~~~~~~~l~~~---l~~aD 211 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALG--ARVFVGARSSADLARIT----EMG---------LIPFPLNKLEEK---VAEID 211 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HCC---------CeeecHHHHHHH---hccCC
Confidence 368999999986 554444444444 58999999886544332 111 11111 111111 14689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028016 146 AIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+...+..-+.....+.++++. +++.+
T Consensus 212 iVint~P~~ii~~~~l~~~k~~a-liIDl 239 (287)
T TIGR02853 212 IVINTIPALVLTADVLSKLPKHA-VIIDL 239 (287)
T ss_pred EEEECCChHHhCHHHHhcCCCCe-EEEEe
Confidence 99987765434466777888864 45544
No 417
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=89.64 E-value=7.1 Score=31.61 Aligned_cols=95 Identities=14% Similarity=0.074 Sum_probs=50.8
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+||-+|||. |...+.-..+.|. ++++.+|.+. ...+.+.+++.+.. ++-+++
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGV-g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-----p~V~V~ 92 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGV-KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-----PYVPVT 92 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-----CCCEEE
Confidence 57899999985 5544433333355 6888888553 23444555555533 123455
Q ss_pred EEeCCCCCCCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEE
Q 028016 129 VHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMV 171 (215)
Q Consensus 129 ~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv 171 (215)
.......... ...||+|++..........+.+..+..+.-+
T Consensus 93 ~~~~~~~~~~--l~~fdvVV~~~~~~~~~~~in~~c~~~~ipf 133 (286)
T cd01491 93 VSTGPLTTDE--LLKFQVVVLTDASLEDQLKINEFCHSPGIKF 133 (286)
T ss_pred EEeccCCHHH--HhcCCEEEEecCCHHHHHHHHHHHHHcCCEE
Confidence 5554422211 1579998877653333233444444344333
No 418
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.62 E-value=2.3 Score=32.15 Aligned_cols=84 Identities=15% Similarity=-0.026 Sum_probs=58.7
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 66 LKPGMHALDIGSG-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
...+..+|-+|+= +|.....+... ..+|+.+|+.+.+..... ++++|... .. +..+.+
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~---~~~vtv~Di~p~~r~~lp--------------~~v~Fr~~--~~--~~~G~~ 100 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK---ADKVTVVDIHPFMRGFLP--------------NNVKFRNL--LK--FIRGEV 100 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc---cceEEEecCCHHHHhcCC--------------CCccHhhh--cC--CCCCce
Confidence 4556899999987 47776666544 379999999997643321 45555443 11 223789
Q ss_pred cEEEEccCCCCchHHHHHhcCCCcEE
Q 028016 145 DAIHVGAAAPEIPQALIDQLKPGGRM 170 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~gG~l 170 (215)
|+|+....+-.+-.+..+-+.|+-.+
T Consensus 101 DlivDlTGlGG~~Pe~L~~fnp~vfi 126 (254)
T COG4017 101 DLIVDLTGLGGIEPEFLAKFNPKVFI 126 (254)
T ss_pred eEEEeccccCCCCHHHHhccCCceEE
Confidence 99999988888888888888886443
No 419
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=89.60 E-value=2.1 Score=30.36 Aligned_cols=76 Identities=14% Similarity=0.120 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028016 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.+.++|-+|+|. |......+...|. .+++.+..+....+...+.+.. ..+.+...+-.. .....+|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~---------~~~~~~~~~~~~--~~~~~~Di 78 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGG---------VNIEAIPLEDLE--EALQEADI 78 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTG---------CSEEEEEGGGHC--HHHHTESE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCc---------cccceeeHHHHH--HHHhhCCe
Confidence 478999999985 4444444444354 5799999998766655554421 355555443222 11257999
Q ss_pred EEEccCCCC
Q 028016 147 IHVGAAAPE 155 (215)
Q Consensus 147 V~~~~~~~~ 155 (215)
|+...+...
T Consensus 79 vI~aT~~~~ 87 (135)
T PF01488_consen 79 VINATPSGM 87 (135)
T ss_dssp EEE-SSTTS
T ss_pred EEEecCCCC
Confidence 998877653
No 420
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.54 E-value=1.4 Score=37.15 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=35.4
Q ss_pred HHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH
Q 028016 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 59 l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~ 113 (215)
++.|. +.++++||-|++|.......+. . +| .+|++||+++......+=++
T Consensus 28 ~~aL~--i~~~d~vl~ItSaG~N~L~yL~-~-~P-~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 28 MEALN--IGPDDRVLTITSAGCNALDYLL-A-GP-KRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HHHhC--CCCCCeEEEEccCCchHHHHHh-c-CC-ceEEEEeCCHHHHHHHHHHH
Confidence 45555 8899999999776554444443 3 56 79999999998766654433
No 421
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=89.53 E-value=0.67 Score=41.03 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=34.8
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecCh
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIP 103 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 103 (215)
.+.++..|||+||.+|+....+++.++..+-|+|+|+-+
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 467888999999999999999999987778999999866
No 422
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=89.53 E-value=2.1 Score=34.45 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=42.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028016 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
...+++.|||--+|+|.......... ...+++|+++..++.+.+++...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHHHhh
Confidence 37889999999999999888777663 78999999999999999988754
No 423
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.51 E-value=2.1 Score=35.77 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=46.4
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
+.+||-+|||. |......+.+.|- ++++.+|.+. ...+.+++++.+..- .-+++
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np-----~v~v~ 101 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGV-GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNP-----DVKVT 101 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCC-----CcEEE
Confidence 57999999996 6655544444455 7899888664 345566666665431 12344
Q ss_pred EEeCCCCCCC--CCCCCccEEEEccCC
Q 028016 129 VHVGDGRKGW--PEFAPYDAIHVGAAA 153 (215)
Q Consensus 129 ~~~~d~~~~~--~~~~~~D~V~~~~~~ 153 (215)
.......... .....||+|+....-
T Consensus 102 ~~~~~i~~~~~~~~~~~~DvVvd~~d~ 128 (355)
T PRK05597 102 VSVRRLTWSNALDELRDADVILDGSDN 128 (355)
T ss_pred EEEeecCHHHHHHHHhCCCEEEECCCC
Confidence 4433333211 011469999887654
No 424
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=89.45 E-value=0.96 Score=36.08 Aligned_cols=94 Identities=21% Similarity=0.239 Sum_probs=60.0
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------
Q 028016 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------ 136 (215)
.+.++.+||-.|+ | .|..+..+++..| .++++++.++...+.+++ .+. . .+.......
T Consensus 133 ~~~~g~~vlI~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~------~--~~~~~~~~~~~~~~~ 198 (320)
T cd05286 133 PVKPGDTVLVHAAAGGVGLLLTQWAKALG--ATVIGTVSSEEKAELARA----AGA------D--HVINYRDEDFVERVR 198 (320)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----CCC------C--EEEeCCchhHHHHHH
Confidence 3567889999994 4 4778888888875 578898888877766643 121 1 111111100
Q ss_pred CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 137 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.......+|+|+....- .......+.|+++|.++..
T Consensus 199 ~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 199 EITGGRGVDVVYDGVGK-DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred HHcCCCCeeEEEECCCc-HhHHHHHHhhccCcEEEEE
Confidence 11122469999876543 4567788999999998864
No 425
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=89.35 E-value=0.22 Score=41.98 Aligned_cols=66 Identities=20% Similarity=0.160 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 138 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 138 (215)
.++|..|-|+.||.|-.++.+++.. ..|++.|.+++++++.+.++.-+.+. ..++++...|+....
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNkv~----~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLNKVD----PSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhccccccc----hhheeeecccHHHHh
Confidence 6788999999999999999998874 89999999999999999988766543 234666666655433
No 426
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=89.33 E-value=0.11 Score=35.32 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=23.4
Q ss_pred CccEEEEccCC------------CCchHHHHHhcCCCcEEEEE
Q 028016 143 PYDAIHVGAAA------------PEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 143 ~~D~V~~~~~~------------~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.||+|+|-... ..+.+.+...|+|||.|++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999887754 23456788999999999995
No 427
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.26 E-value=5.4 Score=31.91 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=59.7
Q ss_pred CCCCCEEEEEcCC--ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028016 66 LKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
..++.+||-.|++ .|..+..+++..| .+++++..++...+.+++ .+. ..+-....+... ..
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~------~~~~~~~~~~~~~i~~~-- 205 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAALLKE----LGA------DEVVIDDGAIAEQLRAA-- 205 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCC------cEEEecCccHHHHHHHh--
Confidence 5678899999863 4788888888875 578988888876666532 221 111100111100 11
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+|+++....- .....+.+.|+++|.++..
T Consensus 206 ~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 206 PGGFDKVLELVGT-ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CCCceEEEECCCh-HHHHHHHHHhccCCEEEEE
Confidence 2569999866543 4567788999999998764
No 428
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=89.13 E-value=6.3 Score=32.91 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=58.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC--CCC---CC
Q 028016 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD--GRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d--~~~---~~ 138 (215)
+++++.+||-.|+|. |..+..+++..|. .+++.++.++...+.+++ + +.. .-+.....+ ... ..
T Consensus 187 ~~~~g~~VlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~a~~-l---Ga~-----~~i~~~~~~~~~~~~v~~~ 256 (373)
T cd08299 187 KVTPGSTCAVFGLGGVGLSAIMGCKAAGA-SRIIAVDINKDKFAKAKE-L---GAT-----ECINPQDYKKPIQEVLTEM 256 (373)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH-c---CCc-----eEecccccchhHHHHHHHH
Confidence 367788999998875 6677777777652 379999998887777743 2 211 011111101 000 01
Q ss_pred CCCCCccEEEEccCCCCchHH-HHHhcCCCcEEEEE
Q 028016 139 PEFAPYDAIHVGAAAPEIPQA-LIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~-~~~~Lk~gG~lv~~ 173 (215)
.. +.+|+|+........... +...++++|.++..
T Consensus 257 ~~-~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~ 291 (373)
T cd08299 257 TD-GGVDFSFEVIGRLDTMKAALASCHEGYGVSVIV 291 (373)
T ss_pred hC-CCCeEEEECCCCcHHHHHHHHhhccCCCEEEEE
Confidence 12 469999887665455555 44455678888765
No 429
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=89.05 E-value=2 Score=35.59 Aligned_cols=79 Identities=20% Similarity=0.174 Sum_probs=45.0
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh---------------------HHHHHHHHHHHhhcccCcccCCC
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP---------------------ELVVSSIQNIEKSAAAPLLKEGS 126 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~---------------------~~~~~a~~~~~~~~~~~~~~~~~ 126 (215)
..+|+-+|||. |......+.+.|. ++++.+|.+. ...+.+++++....- .-+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp-----~v~ 97 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGV-GKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINS-----DVR 97 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCC-----CcE
Confidence 57899999996 6554444444355 7899999863 233444555544321 123
Q ss_pred eEEEeCCCCCCC--CCCCCccEEEEccCC
Q 028016 127 LSVHVGDGRKGW--PEFAPYDAIHVGAAA 153 (215)
Q Consensus 127 v~~~~~d~~~~~--~~~~~~D~V~~~~~~ 153 (215)
++....+..... .-...||+|+....-
T Consensus 98 v~~~~~~~~~~~~~~~~~~~DlVid~~Dn 126 (339)
T PRK07688 98 VEAIVQDVTAEELEELVTGVDLIIDATDN 126 (339)
T ss_pred EEEEeccCCHHHHHHHHcCCCEEEEcCCC
Confidence 444444443211 112569999877554
No 430
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=89.03 E-value=6.6 Score=32.03 Aligned_cols=96 Identities=24% Similarity=0.299 Sum_probs=61.5
Q ss_pred CCCCCEEEEEcCC--ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCC---CCC
Q 028016 66 LKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRK---GWP 139 (215)
Q Consensus 66 ~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~---~~~ 139 (215)
..++.+||-.|++ .|..+..+++..| .+++++..++...+.+++ + +. +.+-.... +... ...
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~------~~v~~~~~~~~~~~~~~~~ 230 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKE-L---GA------DAFVDFKKSDDVEAVKELT 230 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH-c---CC------cEEEcCCCccHHHHHHHHh
Confidence 6778899999886 4778888888876 578999888876665532 2 11 11100011 1100 011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
....+|+|+...........+.+.++++|.++..
T Consensus 231 ~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 231 GGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred cCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEe
Confidence 2256999997555455677888999999999875
No 431
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=88.93 E-value=8.7 Score=31.40 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=52.9
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CCCCCCCCCCCCc
Q 028016 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~ 144 (215)
.++.+|+-+|+|. |......+...+. .+++.++.++...+...+.+. . .... .+..+. ...+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g-----------~-~~~~~~~~~~~---l~~a 239 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELG-----------G-NAVPLDELLEL---LNEA 239 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcC-----------C-eEEeHHHHHHH---HhcC
Confidence 3578999999986 6555544444232 689999999875433332221 1 1111 111111 1358
Q ss_pred cEEEEccCCCCch---HHHHHhcCCCcEEEEEeCC
Q 028016 145 DAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+|+...+.++.. ..+......+|.+++-+..
T Consensus 240 DvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 240 DVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred CEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 9999888877652 2222223335778876544
No 432
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=88.76 E-value=6.1 Score=32.07 Aligned_cols=93 Identities=11% Similarity=0.017 Sum_probs=54.6
Q ss_pred CCEEEEE--cCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCCC
Q 028016 69 GMHALDI--GSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEFA 142 (215)
Q Consensus 69 ~~~vLdi--G~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~~ 142 (215)
+..++-+ |+|. |..+..+++..| .++++++.++...+.+++ .+.. .-+.....+... ......
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~~~----~g~~-----~~i~~~~~~~~~~v~~~~~~~ 211 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRKEQVDLLKK----IGAE-----YVLNSSDPDFLEDLKELIAKL 211 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCc-----EEEECCCccHHHHHHHHhCCC
Confidence 3344443 6654 778888888876 579999998887777754 2211 001111111111 011224
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+|+|+....-. ......+.++++|.++..
T Consensus 212 ~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 212 NATIFFDAVGGG-LTGQILLAMPYGSTLYVY 241 (324)
T ss_pred CCcEEEECCCcH-HHHHHHHhhCCCCEEEEE
Confidence 689998765543 345568889999998874
No 433
>PRK07340 ornithine cyclodeaminase; Validated
Probab=88.74 E-value=6.5 Score=32.07 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=54.0
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
....+++-+|||. |...........+..++...+.++...+...+.+... .+.+...+..+.. ...|
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~---------~~~~~~~~~~~av---~~aD 190 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL---------GPTAEPLDGEAIP---EAVD 190 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc---------CCeeEECCHHHHh---hcCC
Confidence 4457999999997 5555544433334468999999988777666655432 1222222222221 4689
Q ss_pred EEEEccCCCC-chHHHHHhcCCCcEEEEEeC
Q 028016 146 AIHVGAAAPE-IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 146 ~V~~~~~~~~-~~~~~~~~Lk~gG~lv~~~~ 175 (215)
+|++..+..+ +++. .+|||- .+..++
T Consensus 191 iVitaT~s~~Pl~~~---~~~~g~-hi~~iG 217 (304)
T PRK07340 191 LVVTATTSRTPVYPE---AARAGR-LVVAVG 217 (304)
T ss_pred EEEEccCCCCceeCc---cCCCCC-EEEecC
Confidence 9887765543 3332 367664 444443
No 434
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.70 E-value=4.9 Score=30.51 Aligned_cols=89 Identities=15% Similarity=0.088 Sum_probs=47.3
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChH-------------------HHHHHHHHHHhhcccCcccCCCeE
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPE-------------------LVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~-------------------~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+|+-+|||. |........+.|. ++++.+|.+.- ..+.+++++++..- .-+++
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GV-g~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp-----~v~i~ 94 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGI-GSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNP-----RVKVS 94 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCC-CEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCC-----CCEEE
Confidence 57899999986 5544444444455 78999986531 23444555554321 12444
Q ss_pred EEeCCCCCCCC-CCCCccEEEEccCCCCchHHHHHh
Q 028016 129 VHVGDGRKGWP-EFAPYDAIHVGAAAPEIPQALIDQ 163 (215)
Q Consensus 129 ~~~~d~~~~~~-~~~~~D~V~~~~~~~~~~~~~~~~ 163 (215)
.......+... -...||+|++..........+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~ 130 (197)
T cd01492 95 VDTDDISEKPEEFFSQFDVVVATELSRAELVKINEL 130 (197)
T ss_pred EEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHH
Confidence 44443332111 015799999776543333333333
No 435
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=88.62 E-value=2.2 Score=34.76 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=59.6
Q ss_pred CCCCCEEEEEcCC--ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028016 66 LKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
..++.+||-.|++ .|..+..+++..| .++++++.++...+.+++. ...-. . .. .+ ..+... . +.
T Consensus 160 ~~~~~~vlI~g~~g~~g~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~-~~~~~----~-~~-~~-~~~v~~-~---~~ 225 (334)
T PRK13771 160 VKKGETVLVTGAGGGVGIHAIQVAKALG--AKVIAVTSSESKAKIVSKY-ADYVI----V-GS-KF-SEEVKK-I---GG 225 (334)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHH-HHHhc----C-ch-hH-HHHHHh-c---CC
Confidence 6778899999984 3888888888875 5788888888887777543 11100 0 00 00 000111 1 25
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+++....- .....+.+.|+++|.++..
T Consensus 226 ~d~~ld~~g~-~~~~~~~~~l~~~G~~v~~ 254 (334)
T PRK13771 226 ADIVIETVGT-PTLEESLRSLNMGGKIIQI 254 (334)
T ss_pred CcEEEEcCCh-HHHHHHHHHHhcCCEEEEE
Confidence 8988866443 3457788899999998764
No 436
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.59 E-value=3.1 Score=30.94 Aligned_cols=32 Identities=22% Similarity=0.107 Sum_probs=21.5
Q ss_pred EEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh
Q 028016 71 HALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP 103 (215)
Q Consensus 71 ~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~ 103 (215)
+|+-+|||. |........+.|. ++++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 478899995 6544444334354 6799998775
No 437
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=88.53 E-value=3.1 Score=32.98 Aligned_cols=95 Identities=22% Similarity=0.223 Sum_probs=55.5
Q ss_pred CCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028016 66 LKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
..++.+||-.|+ | .|..+..+++..| .++++++.++ ..+.+++ .+.. .-+.....+... ......
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~-~~~~~~~----~g~~-----~~~~~~~~~~~~-~~~~~~ 208 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARG--ARVIATASAA-NADFLRS----LGAD-----EVIDYTKGDFER-AAAPGG 208 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEecch-hHHHHHH----cCCC-----EEEeCCCCchhh-ccCCCC
Confidence 567889999986 4 3677777777765 5677777655 4444422 2211 011111111111 122246
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028016 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+++....-. ....+.+.++++|.++...
T Consensus 209 ~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 209 VDAVLDTVGGE-TLARSLALVKPGGRLVSIA 238 (309)
T ss_pred ceEEEECCchH-HHHHHHHHHhcCcEEEEEc
Confidence 89888654433 5677888999999988653
No 438
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.52 E-value=3 Score=32.64 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=24.6
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP 103 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~ 103 (215)
..+|+-+|||. |......+.+.|- ++++.+|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GV-g~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGV-GKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 57899999995 7666555545455 7899998654
No 439
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=88.45 E-value=0.83 Score=34.03 Aligned_cols=86 Identities=19% Similarity=0.175 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028016 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.+.+|.-+|+|. |......++.+| .+|+++|.+........ . ..+ ...+..+.+ ...|+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~~----~---------~~~--~~~~l~ell---~~aDi 94 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGAD----E---------FGV--EYVSLDELL---AQADI 94 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHH----H---------TTE--EESSHHHHH---HH-SE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhcc----c---------ccc--eeeehhhhc---chhhh
Confidence 378999999997 777777777766 69999999987655111 1 122 122222221 34688
Q ss_pred EEEccCCC----Cc-hHHHHHhcCCCcEEEEE
Q 028016 147 IHVGAAAP----EI-PQALIDQLKPGGRMVIP 173 (215)
Q Consensus 147 V~~~~~~~----~~-~~~~~~~Lk~gG~lv~~ 173 (215)
|+...++. ++ -++....+|+|.+|+=.
T Consensus 95 v~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 95 VSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp EEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred hhhhhccccccceeeeeeeeeccccceEEEec
Confidence 87776642 23 36788899988766553
No 440
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=88.21 E-value=0.42 Score=36.84 Aligned_cols=57 Identities=16% Similarity=0.108 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH
Q 028016 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~ 113 (215)
++.++++.+. ..++.+.+|..-|.|..+..+.+.. +..++++.|.+|.+.+.|..-.
T Consensus 31 m~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 31 MLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred ehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhh
Confidence 4677888887 7778999999999999999998884 6688999999998888776544
No 441
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=88.16 E-value=2.8 Score=29.38 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcc-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCcc
Q 028016 68 PGMHALDIGSGTG-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D 145 (215)
...+|+|+|-|.- ..+..+.+. | ..|+++|+.+. .+. ..+.++..|+.+.... -...|
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~-G--~dV~~tDi~~~---~a~--------------~g~~~v~DDif~P~l~iY~~a~ 72 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER-G--FDVIATDINPR---KAP--------------EGVNFVVDDIFNPNLEIYEGAD 72 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH-S---EEEEE-SS-S---------------------STTEE---SSS--HHHHTTEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHc-C--CcEEEEECccc---ccc--------------cCcceeeecccCCCHHHhcCCc
Confidence 3459999999985 455555555 4 78999999987 111 3567788887763321 14689
Q ss_pred EEEEccCCCCchHHHHHhcCC-CcEEEEE
Q 028016 146 AIHVGAAAPEIPQALIDQLKP-GGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~-gG~lv~~ 173 (215)
+|++..+..++...+.++-+. |.-+++.
T Consensus 73 lIYSiRPP~El~~~il~lA~~v~adlii~ 101 (127)
T PF03686_consen 73 LIYSIRPPPELQPPILELAKKVGADLIIR 101 (127)
T ss_dssp EEEEES--TTSHHHHHHHHHHHT-EEEEE
T ss_pred EEEEeCCChHHhHHHHHHHHHhCCCEEEE
Confidence 999999999988877766544 4555553
No 442
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=88.13 E-value=5.6 Score=31.85 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=24.7
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecC
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHI 102 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s 102 (215)
+.+|+-+|||. |......+.+.|- ++++.+|.+
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GV-g~itLiD~D 63 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGI-GAITLIDMD 63 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence 57899999996 7666655555455 689999866
No 443
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=88.11 E-value=0.99 Score=30.01 Aligned_cols=80 Identities=11% Similarity=0.105 Sum_probs=49.4
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEE
Q 028016 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 149 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~ 149 (215)
.+|| +.||+|..|..++..+ ++.+...+. .+++...+..+.......+|+|+.
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k~-------------------~~~~~~~gi-------~~~v~a~~~~~~~~~~~~~Dvill 56 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNKM-------------------NKAAEEYGV-------PVKIAAGSYGAAGEKLDDADVVLL 56 (95)
T ss_pred cEEE-EECCCchhHHHHHHHH-------------------HHHHHHCCC-------cEEEEEecHHHHHhhcCCCCEEEE
Confidence 3555 5688887666665443 233333332 455666555433222256899999
Q ss_pred ccCCCCchHHHHHhcCCCcEEEEEeCC
Q 028016 150 GAAAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 150 ~~~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.+...+..+++.+.+.+-|.=+..++.
T Consensus 57 ~pqi~~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 57 APQVAYMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred CchHHHHHHHHHHHhhhcCCCEEEeCh
Confidence 999988888888888776655555544
No 444
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.76 E-value=11 Score=28.93 Aligned_cols=97 Identities=18% Similarity=0.133 Sum_probs=56.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--------
Q 028016 69 GMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-------- 139 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------- 139 (215)
+.+||-.|++ |.++..+++.+ ....+|++++.++...+...+.+... .++.++.+|..+...
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--------GNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------CCeEEEECCCCCHHHHHHHHHHH
Confidence 5689999986 44444444433 12258999999887665554433321 356778888765210
Q ss_pred --CCCCccEEEEccCCCC-----------------------chHHHHHhcCCCcEEEEEe
Q 028016 140 --EFAPYDAIHVGAAAPE-----------------------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 140 --~~~~~D~V~~~~~~~~-----------------------~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+.+|.++.+..... +.+.+.+.++.+|.+++..
T Consensus 76 ~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 76 AKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 0135687776654211 1234456667788777654
No 445
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.57 E-value=5.3 Score=32.12 Aligned_cols=94 Identities=19% Similarity=0.209 Sum_probs=47.6
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028016 70 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 70 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++|.-+|+|. |. ++..+++. | .+|+.++.++..++..++ .+.. +....... .............+|+|
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~-g--~~V~~~~r~~~~~~~~~~----~g~~--~~~~~~~~-~~~~~~~~~~~~~~d~v 70 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA-G--HDVTLVARRGAHLDALNE----NGLR--LEDGEITV-PVLAADDPAELGPQDLV 70 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C--CeEEEEECChHHHHHHHH----cCCc--ccCCceee-cccCCCChhHcCCCCEE
Confidence 3688899987 43 33344443 3 589999987766554433 1210 00011110 00011111112578998
Q ss_pred EEccCCCC---chHHHHHhcCCCcEEEEE
Q 028016 148 HVGAAAPE---IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 148 ~~~~~~~~---~~~~~~~~Lk~gG~lv~~ 173 (215)
+....... +.+.+...+.++..++..
T Consensus 71 ila~k~~~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 71 ILAVKAYQLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred EEecccccHHHHHHHHhhhcCCCCEEEEe
Confidence 77765443 334555666666665543
No 446
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=87.45 E-value=4.5 Score=32.94 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=50.7
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028016 70 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 70 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++|+-+|+|. |. ++..+++. | ..|+.++.+...++..++. .+..- ................ ...+.||+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G--~~V~lv~r~~~~~~~i~~~---~Gl~i-~~~g~~~~~~~~~~~~-~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-G--LPVRLILRDRQRLAAYQQA---GGLTL-VEQGQASLYAIPAETA-DAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-C--CCeEEEEechHHHHHHhhc---CCeEE-eeCCcceeeccCCCCc-ccccccCEE
Confidence 6799999997 54 55555554 4 5799999877655544431 11100 0001111111111111 122579988
Q ss_pred EEccCCCC---chHHHHHhcCCCcEEEEE
Q 028016 148 HVGAAAPE---IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 148 ~~~~~~~~---~~~~~~~~Lk~gG~lv~~ 173 (215)
+...-..+ .++.+..++.++..++..
T Consensus 75 iv~vK~~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 75 LLACKAYDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred EEECCHHhHHHHHHHHHhhCCCCCEEEEE
Confidence 77654433 445667778888765553
No 447
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.38 E-value=3.2 Score=31.92 Aligned_cols=33 Identities=21% Similarity=0.061 Sum_probs=23.7
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecC
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHI 102 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s 102 (215)
..+|+-+|||. |........+.|. ++++.+|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gv-g~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGV-GNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 56899999996 6555444444455 689999887
No 448
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.27 E-value=4.2 Score=35.07 Aligned_cols=74 Identities=22% Similarity=0.340 Sum_probs=48.8
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
+++|+-+|-|- |.....+....| ..|+..|.++.......+.... +.+.+..+.... .....+|+|
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~~~~~~~~~~~---------~~i~~~~g~~~~--~~~~~~d~v 73 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAPEGLAAQPLLL---------EGIEVELGSHDD--EDLAEFDLV 73 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCccchhhhhhhc---------cCceeecCccch--hccccCCEE
Confidence 78999999995 765555555544 7999999888763222221111 567777765444 222679999
Q ss_pred EEccCCCC
Q 028016 148 HVGAAAPE 155 (215)
Q Consensus 148 ~~~~~~~~ 155 (215)
+.++.++.
T Consensus 74 V~SPGi~~ 81 (448)
T COG0771 74 VKSPGIPP 81 (448)
T ss_pred EECCCCCC
Confidence 99987753
No 449
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.06 E-value=9.5 Score=32.67 Aligned_cols=89 Identities=17% Similarity=0.118 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE
Q 028016 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 129 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~ 129 (215)
.+.....+...+........+++-+|+|. .+..+++.+.. ...++.+|.+++.++..++.. ..+.+
T Consensus 213 ~~~~l~~~~~~~~~~~~~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----------~~~~~ 279 (453)
T PRK09496 213 AREHIRAVMSEFGRLEKPVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----------PNTLV 279 (453)
T ss_pred CHHHHHHHHHHhCccCCCCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----------CCCeE
Confidence 34445555555543344467899998865 33334433311 268999999999877665432 24567
Q ss_pred EeCCCCCCC----CCCCCccEEEEccC
Q 028016 130 HVGDGRKGW----PEFAPYDAIHVGAA 152 (215)
Q Consensus 130 ~~~d~~~~~----~~~~~~D~V~~~~~ 152 (215)
+.+|..+.. .....+|.|++...
T Consensus 280 i~gd~~~~~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 280 LHGDGTDQELLEEEGIDEADAFIALTN 306 (453)
T ss_pred EECCCCCHHHHHhcCCccCCEEEECCC
Confidence 888876421 12256787776544
No 450
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=87.05 E-value=3.2 Score=33.90 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=48.5
Q ss_pred CCEEEEEcCCc-c-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028016 69 GMHALDIGSGT-G-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.++|+-+|+|. | .++..+++. | ..|+.+..++. +.. ...+..-........+..............+|+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~-g--~~V~~~~r~~~--~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA-G--FDVHFLLRSDY--EAV----RENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDW 75 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-C--CeEEEEEeCCH--HHH----HhCCeEEEeCCCCeeecCceEEcchhhcCCCCE
Confidence 46899999996 5 455555554 3 57777776652 221 122211000001111111111111112257999
Q ss_pred EEEccCCCC---chHHHHHhcCCCcEEEEE
Q 028016 147 IHVGAAAPE---IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 147 V~~~~~~~~---~~~~~~~~Lk~gG~lv~~ 173 (215)
|+....... ..+.+...+++++.++..
T Consensus 76 vilavK~~~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 76 VLVGLKTTANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred EEEEecCCChHhHHHHHhhhcCCCCEEEEe
Confidence 877754433 445677788888876654
No 451
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=87.04 E-value=2.7 Score=35.39 Aligned_cols=80 Identities=20% Similarity=0.132 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecC-------------------hHHHHHHHHHHHhhcccCcccCCCe
Q 028016 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHI-------------------PELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s-------------------~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
.+.+|+-+|||. |......+.+.|. ++++.+|.+ ....+.+++++.+..- .-++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv-g~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np-----~v~v 207 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV-GTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP-----DVQV 207 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC-----CCEE
Confidence 357899999985 6655544444455 789999987 3445556666655321 1233
Q ss_pred EEEeCCCCCCCC--CCCCccEEEEccCC
Q 028016 128 SVHVGDGRKGWP--EFAPYDAIHVGAAA 153 (215)
Q Consensus 128 ~~~~~d~~~~~~--~~~~~D~V~~~~~~ 153 (215)
............ -...+|+|+....-
T Consensus 208 ~~~~~~~~~~~~~~~~~~~D~Vv~~~d~ 235 (376)
T PRK08762 208 EAVQERVTSDNVEALLQDVDVVVDGADN 235 (376)
T ss_pred EEEeccCChHHHHHHHhCCCEEEECCCC
Confidence 333332221100 01469999876554
No 452
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=87.00 E-value=2.5 Score=34.18 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=40.0
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028016 60 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 60 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
+.+. +..+.+|..+|+|.......+++. | .++.++|+++..+...+-++...
T Consensus 57 eam~--~g~ghrivtigSGGcn~L~ylsr~--P-a~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 57 EAMQ--LGIGHRIVTIGSGGCNMLAYLSRA--P-ARIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred HHHh--cCCCcEEEEecCCcchHHHHhhcC--C-ceeEEEeCCHHHHHHHHHHHHHH
Confidence 4454 778899999999987777777664 4 78999999999887766655543
No 453
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=86.94 E-value=1.5 Score=30.89 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=54.9
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+|+-+|||. |......+.+.|. ++++.+|.+. ...+.+++.+.+... .-++.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np-----~~~v~ 75 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINP-----DVEVE 75 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHST-----TSEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcC-----ceeee
Confidence 46899999985 7655544444465 7899988443 235556666665421 13555
Q ss_pred EEeCCCCCCCC--CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 129 VHVGDGRKGWP--EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 129 ~~~~d~~~~~~--~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
....++..... ....+|+|++...-......+.+.++..|.-++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~ 122 (135)
T PF00899_consen 76 AIPEKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFID 122 (135)
T ss_dssp EEESHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEE
T ss_pred eeecccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEE
Confidence 55555522111 0147899987765544444455555555554443
No 454
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=86.88 E-value=2.4 Score=34.33 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=58.1
Q ss_pred CCCEEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 68 PGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
.+.+||-.|+ |. |.....+++..| .++++++.++...+.+++ + +....+..... ....... .. ...+|
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~~~v~~~~~~--~~~~~~~-~~-~~~~d 215 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLG--YEVVASTGKADAADYLKK-L---GAKEVIPREEL--QEESIKP-LE-KQRWA 215 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHH-c---CCCEEEcchhH--HHHHHHh-hc-cCCcC
Confidence 3568999987 44 777778888876 578999888887766643 2 21100000000 0000111 11 24689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028016 146 AIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+....- .......+.|+++|.++...
T Consensus 216 ~vld~~g~-~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 216 GAVDPVGG-KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred EEEECCcH-HHHHHHHHHhhcCCEEEEEe
Confidence 98865544 45677899999999998753
No 455
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=86.68 E-value=13 Score=29.94 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=57.2
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------
Q 028016 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------ 136 (215)
.+.++.+||-.|+ | .|..+..+++..| .+++.+..++...+.+++ .+.. .+.......
T Consensus 136 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~----~g~~--------~~~~~~~~~~~~~i~ 201 (324)
T cd08292 136 GVKPGQWLIQNAAGGAVGKLVAMLAAARG--INVINLVRRDAGVAELRA----LGIG--------PVVSTEQPGWQDKVR 201 (324)
T ss_pred CCCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHh----cCCC--------EEEcCCCchHHHHHH
Confidence 3677889998876 4 4788888888876 456666555555444433 1211 111111100
Q ss_pred CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 137 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.......+|+|+....- .....+.+.|+++|.++..
T Consensus 202 ~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 202 EAAGGAPISVALDSVGG-KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred HHhCCCCCcEEEECCCC-hhHHHHHHhhcCCcEEEEE
Confidence 01122469999876554 3557788999999998864
No 456
>PRK08328 hypothetical protein; Provisional
Probab=86.61 E-value=4.1 Score=31.79 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=24.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP 103 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~ 103 (215)
+.+|+-+|||. |......+.+.|. ++++.+|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gv-g~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGV-GRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 57899999996 7655555445465 7899998543
No 457
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=86.58 E-value=3.8 Score=32.32 Aligned_cols=82 Identities=13% Similarity=0.048 Sum_probs=44.9
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+|+-+|||. |......+.+.|- ++++.+|.+. ...+.+++++.+..- .-+++
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp-----~v~i~ 105 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGV-GTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINP-----HIAIE 105 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCC-----CCEEE
Confidence 57999999985 6655544444454 6888887543 223444555544321 12344
Q ss_pred EEeCCCCCCCC--CCCCccEEEEccCCCCc
Q 028016 129 VHVGDGRKGWP--EFAPYDAIHVGAAAPEI 156 (215)
Q Consensus 129 ~~~~d~~~~~~--~~~~~D~V~~~~~~~~~ 156 (215)
.....+..... -...||+|+........
T Consensus 106 ~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~ 135 (245)
T PRK05690 106 TINARLDDDELAALIAGHDLVLDCTDNVAT 135 (245)
T ss_pred EEeccCCHHHHHHHHhcCCEEEecCCCHHH
Confidence 44433322110 11469999877665443
No 458
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=86.57 E-value=1.9 Score=34.95 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=59.2
Q ss_pred CCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028016 66 LKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
..++.+||-.|+ | .|..+..+++..| .++++++.++...+.+++.+.. . .-+.....+... ....
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~~g~---~-----~~~~~~~~~~~~~v~~~~~ 212 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLLG--ARVVGIAGSDEKCRWLVEELGF---D-----AAINYKTPDLAEALKEAAP 212 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhhcCC---c-----eEEecCChhHHHHHHHhcc
Confidence 566789998884 4 3778888888865 5789998888777766543211 0 001111101100 1112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+++....- .......+.|+++|.++..
T Consensus 213 -~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 213 -DGIDVYFDNVGG-EILDAALTLLNKGGRIALC 243 (329)
T ss_pred -CCceEEEEcchH-HHHHHHHHhcCCCceEEEE
Confidence 468998865443 4567788999999998754
No 459
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.54 E-value=2.2 Score=35.15 Aligned_cols=129 Identities=19% Similarity=0.162 Sum_probs=66.4
Q ss_pred CEEEEEcCCc-c-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh-------cccCcccCCCeEEEeCCCCCCCCC
Q 028016 70 MHALDIGSGT-G-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-------AAAPLLKEGSLSVHVGDGRKGWPE 140 (215)
Q Consensus 70 ~~vLdiG~G~-G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~~~~~~~v~~~~~d~~~~~~~ 140 (215)
.+|--||+|+ | ..+..++.. | .+|+..|.+++..+.++..+... +........++.+.. +..+ .
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-G--~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~---a 80 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-G--LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEA---C 80 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHH---H
Confidence 5788999997 4 344444544 3 79999999998887766554321 100000001222111 1111 1
Q ss_pred CCCccEEEEccCC-----CCchHHHHHhcCCCcEEEEEeCCCc-eeEEEEEEcCCCceEEEeeceEEEeec
Q 028016 141 FAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPVGNIF-QDLKVVDKNQDGSLSIWSETSVRYVPL 205 (215)
Q Consensus 141 ~~~~D~V~~~~~~-----~~~~~~~~~~Lk~gG~lv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ 205 (215)
....|+|+...+- +.+..++.+.++|+..|..++.... ..+....+..+.....+...+..++|+
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pL 151 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPL 151 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCce
Confidence 1457888876543 2344667788888875544443211 111111122234445565566666665
No 460
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=86.39 E-value=12 Score=30.18 Aligned_cols=97 Identities=13% Similarity=0.024 Sum_probs=58.7
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC-CCC---CC
Q 028016 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-GRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d-~~~---~~ 138 (215)
...++.+||-.|+ | .|..+..+++..| .+++.+..++...+.+++ + +.. .-+.....+ ... ..
T Consensus 137 ~~~~~~~vlI~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~~-----~~~~~~~~~~~~~~~~~~ 205 (334)
T PTZ00354 137 DVKKGQSVLIHAGASGVGTAAAQLAEKYG--AATIITTSSEEKVDFCKK-L---AAI-----ILIRYPDEEGFAPKVKKL 205 (334)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---CCc-----EEEecCChhHHHHHHHHH
Confidence 3567889999884 3 4788888888875 456667778877776643 2 211 001111111 100 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+++.... ........+.|+++|.++..
T Consensus 206 ~~~~~~d~~i~~~~-~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 206 TGEKGVNLVLDCVG-GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred hCCCCceEEEECCc-hHHHHHHHHHhccCCeEEEE
Confidence 12246899987643 35567788999999998863
No 461
>PRK06153 hypothetical protein; Provisional
Probab=86.27 E-value=6.9 Score=33.08 Aligned_cols=33 Identities=15% Similarity=0.003 Sum_probs=25.0
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecC
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHI 102 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s 102 (215)
+.+|+-+|||. |+.....+.+.|. ++++.+|.+
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV-geI~LVD~D 209 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV-REIHLFDGD 209 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC-CEEEEECCC
Confidence 57999999996 7766655555565 789999865
No 462
>PRK07411 hypothetical protein; Validated
Probab=86.17 E-value=4 Score=34.59 Aligned_cols=80 Identities=20% Similarity=0.150 Sum_probs=46.1
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+||-+|||. |......+.+.|- ++++.+|.+. ...+.+++++.+..- .-+++
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gv-g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np-----~v~v~ 111 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGI-GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINP-----YCQVD 111 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCC-----CCeEE
Confidence 57999999996 6655544444465 7888888553 224445555554321 13455
Q ss_pred EEeCCCCCCCC--CCCCccEEEEccCCC
Q 028016 129 VHVGDGRKGWP--EFAPYDAIHVGAAAP 154 (215)
Q Consensus 129 ~~~~d~~~~~~--~~~~~D~V~~~~~~~ 154 (215)
.....+..... ....||+|+....-.
T Consensus 112 ~~~~~~~~~~~~~~~~~~D~Vvd~~d~~ 139 (390)
T PRK07411 112 LYETRLSSENALDILAPYDVVVDGTDNF 139 (390)
T ss_pred EEecccCHHhHHHHHhCCCEEEECCCCH
Confidence 55444433111 114699998876543
No 463
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=86.16 E-value=5.4 Score=35.27 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=59.2
Q ss_pred CCEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-----CC
Q 028016 69 GMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-----PE 140 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 140 (215)
+.+||--|. +|+.+..+++++ +| .+++.+|.++..+....+.++... +..++.+..+|+.+.- ..
T Consensus 250 gK~vLVTGa-gGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~-----~~~~~~~~igdVrD~~~~~~~~~ 322 (588)
T COG1086 250 GKTVLVTGG-GGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKF-----PELKLRFYIGDVRDRDRVERAME 322 (588)
T ss_pred CCEEEEeCC-CCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhC-----CCcceEEEecccccHHHHHHHHh
Confidence 678887774 566666665544 45 789999999999998888877642 2367889999988632 22
Q ss_pred CCCccEEEEccCCCCch
Q 028016 141 FAPYDAIHVGAAAPEIP 157 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~ 157 (215)
..+.|.|+-.+.+.|++
T Consensus 323 ~~kvd~VfHAAA~KHVP 339 (588)
T COG1086 323 GHKVDIVFHAAALKHVP 339 (588)
T ss_pred cCCCceEEEhhhhccCc
Confidence 24689999888776655
No 464
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=86.13 E-value=3.4 Score=31.49 Aligned_cols=43 Identities=23% Similarity=0.229 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 028016 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
.+++|+-+|.|. |......+...| .+|+++|.++..++..++.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G--~~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEG--AKLIVADINEEAVARAAEL 70 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHH
Confidence 468999999985 443333333323 6899999998877665543
No 465
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=85.80 E-value=3.4 Score=28.13 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=54.8
Q ss_pred EEEEEcCCc-cHHHHHHHHHhCCCCeEE-EEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028016 71 HALDIGSGT-GYLTACFALMVGPQGRAV-GVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 71 ~vLdiG~G~-G~~~~~l~~~~~~~~~v~-~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
+|.-+|+|. |...........+..+++ .+|.++...+.+.+.+ .+. ...+..+.+.. ...|+|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------------~~~-~~~~~~~ll~~-~~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------------GIP-VYTDLEELLAD-EDVDAVI 67 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------------TSE-EESSHHHHHHH-TTESEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------------ccc-chhHHHHHHHh-hcCCEEE
Confidence 578899987 443332333333445655 5799888766654332 222 33333332222 4799998
Q ss_pred EccCCCCchHHHHHhcCCCcEEEEEeC
Q 028016 149 VGAAAPEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 149 ~~~~~~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
...+...-.+.+...|+.|--+++.=|
T Consensus 68 I~tp~~~h~~~~~~~l~~g~~v~~EKP 94 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALEAGKHVLVEKP 94 (120)
T ss_dssp EESSGGGHHHHHHHHHHTTSEEEEESS
T ss_pred EecCCcchHHHHHHHHHcCCEEEEEcC
Confidence 887776666777788888877777543
No 466
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=85.79 E-value=0.7 Score=36.97 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=30.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHH
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 106 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 106 (215)
.-.+.+|||+|||+|...+.+... +. ..+...|.+...+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~-~~-~~~~fqD~na~vl 152 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVK-GA-VSVHFQDFNAEVL 152 (282)
T ss_pred EecCceeEecCCcccccchhhhhh-cc-ceeeeEecchhhe
Confidence 345789999999999888888765 33 5788888877766
No 467
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=85.64 E-value=7.9 Score=31.76 Aligned_cols=97 Identities=9% Similarity=0.013 Sum_probs=50.5
Q ss_pred EEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeEEE
Q 028016 71 HALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 71 ~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
+||-+|||. |...+....+.|. ++++.+|.+. ...+.+++++.+... .-+++..
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp-----~v~V~~~ 74 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNP-----NVKIVAY 74 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCC-----CCeEEEE
Confidence 478899985 6444433334465 7888888543 223444555544321 1345555
Q ss_pred eCCCCCCCC---CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 131 VGDGRKGWP---EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 131 ~~d~~~~~~---~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+..+... -...||+|+....-......+.+.....+.-++.
T Consensus 75 ~~~i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~ 120 (312)
T cd01489 75 HANIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIE 120 (312)
T ss_pred eccCCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEE
Confidence 555543211 1147999988876544333333443334443443
No 468
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=85.58 E-value=5.2 Score=33.66 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=44.9
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+|+-+|||. |......+.+.|. ++++.+|.+. ...+.+++++....- .-+++
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gv-g~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np-----~v~i~ 114 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGV-GTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQP-----DIRVN 114 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCC-----CCeeE
Confidence 57899999996 6655555444455 7899988662 234555555554321 12344
Q ss_pred EEeCCCCCCCC--CCCCccEEEEccCC
Q 028016 129 VHVGDGRKGWP--EFAPYDAIHVGAAA 153 (215)
Q Consensus 129 ~~~~d~~~~~~--~~~~~D~V~~~~~~ 153 (215)
.....+..... -...+|+|+....-
T Consensus 115 ~~~~~i~~~~~~~~~~~~DlVid~~Dn 141 (370)
T PRK05600 115 ALRERLTAENAVELLNGVDLVLDGSDS 141 (370)
T ss_pred EeeeecCHHHHHHHHhCCCEEEECCCC
Confidence 44333322111 11469999876654
No 469
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=85.57 E-value=1.7 Score=36.54 Aligned_cols=115 Identities=22% Similarity=0.239 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH-------hhcccCcccC
Q 028016 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE-------KSAAAPLLKE 124 (215)
Q Consensus 52 ~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~-------~~~~~~~~~~ 124 (215)
+..+..+.+.+. +.+++...|+|+|.|.+...++...+. .+-+|+++....-+.+..+.. ..+. ..
T Consensus 178 ~~ql~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~-k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk----~~ 250 (419)
T KOG3924|consen 178 LEQLRSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGC-KKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK----KP 250 (419)
T ss_pred HHHHHHHHHHhc--cCCCCcccCCCcccchhhHHHHHhhcc-ccccceeeecCcHHHHHHHHHHHHHHHHHhCC----Cc
Confidence 334555666666 888999999999999999888877543 567888877655444433222 2222 12
Q ss_pred CCeEEEeCCCCCCCC---CCCCccEEEEccCCC--Cc---hHHHHHhcCCCcEEEEE
Q 028016 125 GSLSVHVGDGRKGWP---EFAPYDAIHVGAAAP--EI---PQALIDQLKPGGRMVIP 173 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~---~~~~~D~V~~~~~~~--~~---~~~~~~~Lk~gG~lv~~ 173 (215)
..+..+++++...-. -....++|+++...- ++ .+++..-+++|-+++-+
T Consensus 251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 251 NKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred CceeecccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecc
Confidence 456667776654211 013567887776431 11 13678888999888764
No 470
>PRK14851 hypothetical protein; Provisional
Probab=85.57 E-value=14 Score=33.85 Aligned_cols=79 Identities=10% Similarity=-0.072 Sum_probs=45.7
Q ss_pred CCEEEEEcCC-ccHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028016 69 GMHALDIGSG-TGYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
+.+|+-+||| .|+.......+.|- ++++.+|.+. .-++.+++++.... +.-+++
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GV-G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~in-----P~~~I~ 116 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGI-GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSIN-----PFLEIT 116 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCC-CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhC-----CCCeEE
Confidence 5799999999 57655555444466 7888888443 22344455544432 123555
Q ss_pred EEeCCCCCCCC--CCCCccEEEEccCC
Q 028016 129 VHVGDGRKGWP--EFAPYDAIHVGAAA 153 (215)
Q Consensus 129 ~~~~d~~~~~~--~~~~~D~V~~~~~~ 153 (215)
.....+..... -...+|+|+...+.
T Consensus 117 ~~~~~i~~~n~~~~l~~~DvVid~~D~ 143 (679)
T PRK14851 117 PFPAGINADNMDAFLDGVDVVLDGLDF 143 (679)
T ss_pred EEecCCChHHHHHHHhCCCEEEECCCC
Confidence 55555543211 01469999866654
No 471
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.55 E-value=5.6 Score=32.35 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=48.4
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028016 70 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 70 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
.+|.-+|+|. |. ++..+.+. +...+|+++|.++...+.+++ .+. ......+.... ....|+|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~~~~~~a~~----~g~--------~~~~~~~~~~~---~~~aDvV 70 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSAETRARARE----LGL--------GDRVTTSAAEA---VKGADLV 70 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCHHHHHHHHh----CCC--------CceecCCHHHH---hcCCCEE
Confidence 5789999886 43 33333333 332479999999887665542 111 11111111111 1457998
Q ss_pred EEccCCCC---chHHHHHhcCCCcEEEE
Q 028016 148 HVGAAAPE---IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 148 ~~~~~~~~---~~~~~~~~Lk~gG~lv~ 172 (215)
+...+... +.+.+...+++++.++.
T Consensus 71 iiavp~~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 71 ILCVPVGASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred EECCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence 87776543 33455567788775543
No 472
>PRK13699 putative methylase; Provisional
Probab=85.38 E-value=1 Score=35.12 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=14.8
Q ss_pred hHHHHHhcCCCcEEEEEeC
Q 028016 157 PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 157 ~~~~~~~Lk~gG~lv~~~~ 175 (215)
..++.++|||||.+++.+.
T Consensus 55 l~E~~RVLKpgg~l~if~~ 73 (227)
T PRK13699 55 CNEMYRVLKKDALMVSFYG 73 (227)
T ss_pred HHHHHHHcCCCCEEEEEec
Confidence 3577899999999987543
No 473
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=85.33 E-value=3.8 Score=30.64 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=50.7
Q ss_pred EEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcc----cCccc-------CCCeEEEeCCCCCC
Q 028016 71 HALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA----APLLK-------EGSLSVHVGDGRKG 137 (215)
Q Consensus 71 ~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~-------~~~v~~~~~d~~~~ 137 (215)
+|--+|+|+ |. ++..++.. | .+|+.+|.+++.++.+++++...-. ...+. ..++.+ ..|....
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~ 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-G--YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-T--SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG
T ss_pred CEEEEcCCHHHHHHHHHHHhC-C--CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH
Confidence 467899998 53 33344444 3 7999999999999888877765110 00000 123332 2232222
Q ss_pred CCCCCCccEEEEccCC-----CCchHHHHHhcCCCcEEEEEeC
Q 028016 138 WPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~-----~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
...|+|+-..+- ..++.++.+.+.|+-.|...+.
T Consensus 77 ----~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 77 ----VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp ----CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred ----hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence 257888766432 1244556667777777666543
No 474
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=85.32 E-value=17 Score=28.91 Aligned_cols=88 Identities=23% Similarity=0.315 Sum_probs=57.7
Q ss_pred CCCEEEEEcCC--ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 68 PGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
++.+|+-.|++ .|..+..+++..| .++++++.++...+.+++ + +. ... +.... . ... +.+|
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~------~~~-~~~~~--~-~~~-~~~d 194 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAG--AHVVAVVGSPARAEGLRE-L---GA------AEV-VVGGS--E-LSG-APVD 194 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---CC------cEE-Eeccc--c-ccC-CCce
Confidence 48899999883 3777777888765 578888888877776654 2 21 111 11100 1 112 4689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 146 AIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+++....- .......+.|+++|.++..
T Consensus 195 ~vl~~~g~-~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 195 LVVDSVGG-PQLARALELLAPGGTVVSV 221 (305)
T ss_pred EEEECCCc-HHHHHHHHHhcCCCEEEEE
Confidence 99876543 3567789999999998865
No 475
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=85.17 E-value=7.3 Score=33.45 Aligned_cols=98 Identities=10% Similarity=0.029 Sum_probs=52.0
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+||-+|||. |...+.-+-+.|- ++++.+|.+. ...+.+.+++.+..- .-+++
T Consensus 20 ~s~VlliG~gglGsEilKNLvL~GI-g~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp-----~V~i~ 93 (425)
T cd01493 20 SAHVCLLNATATGTEILKNLVLPGI-GSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNP-----DVNGS 93 (425)
T ss_pred hCeEEEEcCcHHHHHHHHHHHHcCC-CeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCC-----CCEEE
Confidence 57899999985 5433333333344 6888888552 223445555555431 13445
Q ss_pred EEeCCCCCCCCC----CCCccEEEEccCCCCchHHHHHhcCCCcEEEE
Q 028016 129 VHVGDGRKGWPE----FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 129 ~~~~d~~~~~~~----~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
++..+....... ...||+|++..........+.+.++..|.-++
T Consensus 94 ~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI 141 (425)
T cd01493 94 AVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLL 141 (425)
T ss_pred EEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 555444321110 14789998876544333345455555554444
No 476
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=84.99 E-value=4.3 Score=33.19 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=52.8
Q ss_pred CCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 68 PGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
++.+|+-.|. | .|.....+++..| .+++++..+ ...+.+++ .+.. ..+.....+..........+|
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~-~~~~~~~~----~g~~-----~~~~~~~~~~~~~l~~~~~vd 229 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWG--AHVTTTCST-DAIPLVKS----LGAD-----DVIDYNNEDFEEELTERGKFD 229 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCc-chHHHHHH----hCCc-----eEEECCChhHHHHHHhcCCCC
Confidence 3889998883 4 3777777888876 457776643 33332222 2211 011110001111111124689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 146 AIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+++...... ....+.+.|+++|.++..
T Consensus 230 ~vi~~~g~~-~~~~~~~~l~~~G~~v~~ 256 (350)
T cd08248 230 VILDTVGGD-TEKWALKLLKKGGTYVTL 256 (350)
T ss_pred EEEECCChH-HHHHHHHHhccCCEEEEe
Confidence 999765544 667789999999999875
No 477
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.83 E-value=13 Score=32.96 Aligned_cols=92 Identities=16% Similarity=0.072 Sum_probs=55.4
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCCCCc
Q 028016 70 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPY 144 (215)
Q Consensus 70 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~ 144 (215)
.+++-+|||. |.......+..+ ..++.+|.+++.++.+++ .....+.+|..+.. ..-+.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~-------------~g~~~i~GD~~~~~~L~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG--IPLVVIETSRTRVDELRE-------------RGIRAVLGNAANEEIMQLAHLDCA 482 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH-------------CCCeEEEcCCCCHHHHHhcCcccc
Confidence 5788888876 544333332212 689999999998877753 35678889987631 122578
Q ss_pred cEEEEccCCCCc---hHHHHHhcCCCcEEEEEeCC
Q 028016 145 DAIHVGAAAPEI---PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~~~---~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|.+++..+-+.- .-...+...|...++.-..+
T Consensus 483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~ 517 (558)
T PRK10669 483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIARAHY 517 (558)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 877654333211 11234555677777765443
No 478
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=84.80 E-value=12 Score=26.68 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHHHH
Q 028016 67 KPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~ 113 (215)
..+.+|+-+|+|. .+..+++.+ + ...++.+|.++...+...+.+
T Consensus 17 ~~~~~i~iiG~G~--~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 17 LKGKKVLILGAGG--AARAVAYALAELG-AAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCCEEEEECCcH--HHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHH
Confidence 3467899999874 333333222 2 257999999887766554443
No 479
>PRK08324 short chain dehydrogenase; Validated
Probab=84.67 E-value=7.4 Score=35.53 Aligned_cols=76 Identities=14% Similarity=0.027 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-------
Q 028016 68 PGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------- 139 (215)
++.++|-.|++. .++..+++.+. ...+|++++.++...+.+.+.+... .++.++..|..+...
T Consensus 421 ~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--------~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 421 AGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--------DRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--------CcEEEEEecCCCHHHHHHHHHH
Confidence 457888888643 33333333321 1258999999987766655443321 256777777764210
Q ss_pred ---CCCCccEEEEccC
Q 028016 140 ---EFAPYDAIHVGAA 152 (215)
Q Consensus 140 ---~~~~~D~V~~~~~ 152 (215)
..+.+|+|+.+..
T Consensus 492 ~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 492 AALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246899887765
No 480
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=84.52 E-value=9.5 Score=28.97 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=22.4
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecC
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHI 102 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s 102 (215)
+.+|+-+|||. |........+.|. ++++.+|.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV-g~i~lvD~d 52 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI-DSITIVDHR 52 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEECC
Confidence 57899999996 5544444334355 678888855
No 481
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=84.47 E-value=4.9 Score=29.48 Aligned_cols=102 Identities=21% Similarity=0.187 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHH-HHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028016 57 TCLQLLEENLKPGMHALDIGSGTGYLTA-CFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
.+.+.+......+.+|.-.|+|....+. ..+.. +++.-...+|.++.- .+.. .+...+-++..+..
T Consensus 56 ~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~-~~~~I~~vvD~np~K----------~G~~--~PGt~ipI~~p~~l 122 (160)
T PF08484_consen 56 ELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGL-DNDLIDYVVDDNPLK----------QGKY--LPGTHIPIVSPEEL 122 (160)
T ss_dssp HHHHHHHHHHHTT--EEEE---SHHHHHHHHHT---TTTS--EEES-GGG----------TTEE---TTT--EEEEGGG-
T ss_pred HHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCC-CcceeEEEEeCChhh----------cCcc--cCCCCCeECCHHHH
Confidence 3444443234567899999999965543 33322 222345677877642 1111 11123444443322
Q ss_pred CCCCCCCCccEEEEccCC--CCchHHHHHhcCCCcEEEEEeC
Q 028016 136 KGWPEFAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~--~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
. . ...|.|+..+.. +++.+.+...++.||.+++++|
T Consensus 123 ~---~-~~pd~vivlaw~y~~EI~~~~~~~~~~gg~fi~plP 160 (160)
T PF08484_consen 123 K---E-RKPDYVIVLAWNYKDEIIEKLREYLERGGKFIVPLP 160 (160)
T ss_dssp ----S-S--SEEEES-GGGHHHHHHHTHHHHHTT-EEEE-SS
T ss_pred h---h-CCCCEEEEcChhhHHHHHHHHHHHHhcCCEEEEeCC
Confidence 2 1 456877654322 3355566778889999999875
No 482
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.44 E-value=4.4 Score=31.84 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=24.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP 103 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~ 103 (215)
+.+|+-+|||. |......+.+.|- ++++.+|.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 47899999996 7665555555455 6788887554
No 483
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=84.25 E-value=19 Score=28.95 Aligned_cols=97 Identities=23% Similarity=0.200 Sum_probs=59.8
Q ss_pred CCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028016 66 LKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
..++.+||-.|+ | .|..+..+++..| .++++++.++...+.+++ .+.. .-+.....+... ....
T Consensus 140 ~~~~~~vlI~g~~~~~g~~~~~la~~~g--~~v~~~~~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~~~~~~~~ 208 (324)
T cd08244 140 LTPGDVVLVTAAAGGLGSLLVQLAKAAG--ATVVGAAGGPAKTALVRA----LGAD-----VAVDYTRPDWPDQVREALG 208 (324)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCC-----EEEecCCccHHHHHHHHcC
Confidence 567889999884 3 4778888888876 578999988887766633 2211 001100001100 0112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028016 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
...+|+|+....-. ......+.|+++|.++...
T Consensus 209 ~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 209 GGGVTVVLDGVGGA-IGRAALALLAPGGRFLTYG 241 (324)
T ss_pred CCCceEEEECCChH-hHHHHHHHhccCcEEEEEe
Confidence 24699998765544 3477889999999988653
No 484
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=84.14 E-value=12 Score=29.92 Aligned_cols=96 Identities=22% Similarity=0.219 Sum_probs=59.0
Q ss_pred cCCCCCEEEEEcCC--ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC---CC
Q 028016 65 NLKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~ 139 (215)
++++|++||--.+. .|.+...+++..+ ..+++.-.+.+-.+.++++ +.. ..+.....|..+. ..
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~~--a~tI~~asTaeK~~~aken----G~~-----h~I~y~~eD~v~~V~kiT 211 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAVG--AHTIATASTAEKHEIAKEN----GAE-----HPIDYSTEDYVDEVKKIT 211 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhcC--cEEEEEeccHHHHHHHHhc----CCc-----ceeeccchhHHHHHHhcc
Confidence 58899988765443 3667777777764 5666666666666666653 332 3344444444321 11
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEE
Q 028016 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
.....|+++..-.... .+.-...||++|.++-
T Consensus 212 ngKGVd~vyDsvG~dt-~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 212 NGKGVDAVYDSVGKDT-FAKSLAALKPMGKMVS 243 (336)
T ss_pred CCCCceeeeccccchh-hHHHHHHhccCceEEE
Confidence 2245788876655543 4556789999999875
No 485
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=83.97 E-value=12 Score=30.30 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=55.9
Q ss_pred CCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028016 66 LKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
..++.+|+-.|+ | .|..+..+++..| .+++++.. +...+.+++ + +. ..+.....+........+.
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~v~~~~~-~~~~~~~~~-~---g~------~~~~~~~~~~~~~~~~~~~ 203 (331)
T cd08273 137 VLTGQRVLIHGASGGVGQALLELALLAG--AEVYGTAS-ERNHAALRE-L---GA------TPIDYRTKDWLPAMLTPGG 203 (331)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeC-HHHHHHHHH-c---CC------eEEcCCCcchhhhhccCCC
Confidence 677889999986 3 3677777887765 56787775 655555532 2 21 0010000011110011146
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028016 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+|+....-.. .....+.++++|.++...
T Consensus 204 ~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g 233 (331)
T cd08273 204 VDVVFDGVGGES-YEESYAALAPGGTLVCYG 233 (331)
T ss_pred ceEEEECCchHH-HHHHHHHhcCCCEEEEEc
Confidence 899986655443 667789999999988643
No 486
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=83.90 E-value=6.1 Score=31.83 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=28.5
Q ss_pred CEEEEEcCCc--cHHHHHHHHHhCCCCeEEEEecChHHHHHHH
Q 028016 70 MHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSI 110 (215)
Q Consensus 70 ~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 110 (215)
.+|+-+|.|- |+++..+... |....+++.|.+....+.+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~-g~~v~i~g~d~~~~~~~~a~ 45 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA-GLVVRIIGRDRSAATLKAAL 45 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc-CCeEEEEeecCcHHHHHHHh
Confidence 5788899886 4555555555 56567889998887776664
No 487
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=83.55 E-value=20 Score=29.05 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=58.6
Q ss_pred CCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC-C-CCCCCCc
Q 028016 69 GMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-G-WPEFAPY 144 (215)
Q Consensus 69 ~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~~ 144 (215)
+.+|+-.|+ | .|.....+++..|. .++++++.++...+.+++ + +.. .+--...+... . ......+
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~---g~~------~~~~~~~~~~~~i~~~~~~~~ 218 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTG-LTVIATASRPESIAWVKE-L---GAD------HVINHHQDLAEQLEALGIEPV 218 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCC-cEEEEEcCChhhHHHHHh-c---CCc------EEEeCCccHHHHHHhhCCCCC
Confidence 789999985 3 37777788888652 578999888877776643 2 211 11000001100 0 0112468
Q ss_pred cEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 145 DAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
|+++...........+.+.++++|.++..
T Consensus 219 d~vl~~~~~~~~~~~~~~~l~~~g~~v~~ 247 (336)
T cd08252 219 DYIFCLTDTDQHWDAMAELIAPQGHICLI 247 (336)
T ss_pred CEEEEccCcHHHHHHHHHHhcCCCEEEEe
Confidence 99987655445678889999999998864
No 488
>PRK08223 hypothetical protein; Validated
Probab=83.50 E-value=10 Score=30.69 Aligned_cols=79 Identities=11% Similarity=-0.044 Sum_probs=43.8
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+|+-+|||. |......+.+.|- ++++.+|.+. .-.+.+++++.+..- .-+++
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGV-G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP-----~v~V~ 100 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGI-GKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINP-----ELEIR 100 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC-CeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCC-----CCEEE
Confidence 57999999995 6654444434365 6888888553 224445555554321 12444
Q ss_pred EEeCCCCCCCC--CCCCccEEEEccCC
Q 028016 129 VHVGDGRKGWP--EFAPYDAIHVGAAA 153 (215)
Q Consensus 129 ~~~~d~~~~~~--~~~~~D~V~~~~~~ 153 (215)
.....+..... -...||+|+...+.
T Consensus 101 ~~~~~l~~~n~~~ll~~~DlVvD~~D~ 127 (287)
T PRK08223 101 AFPEGIGKENADAFLDGVDVYVDGLDF 127 (287)
T ss_pred EEecccCccCHHHHHhCCCEEEECCCC
Confidence 44443332111 01469999855543
No 489
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=83.44 E-value=6.8 Score=33.76 Aligned_cols=106 Identities=16% Similarity=0.077 Sum_probs=61.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE-EEeCCCCCCCCCCCCccE
Q 028016 69 GMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS-VHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~D~ 146 (215)
...+.|+|+|.|.-.-.+....+ ....++.||.+..+.....+++.. +.. +...-+. ++.-+..........||+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~--~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSH--IGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhh--cCchhccccchhcccCCCCcccceee
Confidence 35788898887643333322222 246899999999999988877754 110 0000000 011111111122246999
Q ss_pred EEEccCCCCch----------HHHHHhcCCCcEEEEEeCCC
Q 028016 147 IHVGAAAPEIP----------QALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 147 V~~~~~~~~~~----------~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|++...+.++. .-..+..++||.+++.-...
T Consensus 278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 99988775533 23567788999998865543
No 490
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=83.44 E-value=11 Score=30.38 Aligned_cols=96 Identities=21% Similarity=0.217 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEec--ChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCC
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEH--IPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 139 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~--s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~ 139 (215)
+.++.+||-.|+|. |..+..+++..| .+++.+.. +....+.+++ .+.. .+.....+... ...
T Consensus 162 ~~~g~~vlI~g~g~~g~~~~~la~~~G--~~v~~~~~~~~~~~~~~~~~----~g~~------~~~~~~~~~~~~l~~~~ 229 (306)
T cd08258 162 IRPGDTVVVFGPGPIGLLAAQVAKLQG--ATVVVVGTEKDEVRLDVAKE----LGAD------AVNGGEEDLAELVNEIT 229 (306)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHH----hCCc------ccCCCcCCHHHHHHHHc
Confidence 56778888877654 667777787765 45666533 3333333332 2211 11001111100 011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
....+|+++.............+.|+++|.++..
T Consensus 230 ~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~ 263 (306)
T cd08258 230 DGDGADVVIECSGAVPALEQALELLRKGGRIVQV 263 (306)
T ss_pred CCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 2246899987754445667788999999998864
No 491
>PRK06141 ornithine cyclodeaminase; Validated
Probab=83.44 E-value=17 Score=29.71 Aligned_cols=94 Identities=20% Similarity=0.165 Sum_probs=52.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028016 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.....+|+-+|||. |...........+..+++..+.+++..+...+.+...+ ..+.. ..+..+.. ...
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g-------~~~~~-~~~~~~av---~~a 190 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG-------FDAEV-VTDLEAAV---RQA 190 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC-------CceEE-eCCHHHHH---hcC
Confidence 34467999999997 55554332332344789999999887666655554321 12222 12221111 458
Q ss_pred cEEEEccCCCC-chHHHHHhcCCCcEEEE
Q 028016 145 DAIHVGAAAPE-IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 145 D~V~~~~~~~~-~~~~~~~~Lk~gG~lv~ 172 (215)
|+|++..+... ++. ...++||-.+..
T Consensus 191 DIVi~aT~s~~pvl~--~~~l~~g~~i~~ 217 (314)
T PRK06141 191 DIISCATLSTEPLVR--GEWLKPGTHLDL 217 (314)
T ss_pred CEEEEeeCCCCCEec--HHHcCCCCEEEe
Confidence 98876655432 222 256788774433
No 492
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.43 E-value=6.5 Score=35.53 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=58.3
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCCCC
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAP 143 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~ 143 (215)
..+|+-+|+|. |.........-+ ..++.+|.|++.++.+++ ....++.+|..+.. ..-+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~-------------~g~~v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG--VKMTVLDHDPDHIETLRK-------------FGMKVFYGDATRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHh-------------cCCeEEEEeCCCHHHHHhcCCCc
Confidence 36888898886 655444433322 589999999999888764 24568888887631 12257
Q ss_pred ccEEEEccCCCCchH---HHHHhcCCCcEEEEEeCC
Q 028016 144 YDAIHVGAAAPEIPQ---ALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~---~~~~~Lk~gG~lv~~~~~ 176 (215)
.|.+++...-++... ...+.+.|+-.++.-..+
T Consensus 465 A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d 500 (621)
T PRK03562 465 AEVLINAIDDPQTSLQLVELVKEHFPHLQIIARARD 500 (621)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 888876665433221 234555677666654433
No 493
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.79 E-value=2.4 Score=34.01 Aligned_cols=98 Identities=20% Similarity=0.165 Sum_probs=54.5
Q ss_pred EEEEEcCCc-c-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh-------cccCcc----cCCCeEEEeCCCCCC
Q 028016 71 HALDIGSGT-G-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-------AAAPLL----KEGSLSVHVGDGRKG 137 (215)
Q Consensus 71 ~vLdiG~G~-G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~~~----~~~~v~~~~~d~~~~ 137 (215)
+|--+|+|. | .++..+++. | .+|+++|.+++.++.+++++... +....- ...++.+. .|..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~-- 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-G--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLD-- 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-C--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH--
Confidence 578899986 3 444455544 3 58999999999987665443321 100000 00122211 2211
Q ss_pred CCCCCCccEEEEccCC-----CCchHHHHHhcCCCcEEEEEeCC
Q 028016 138 WPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~-----~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.....|+|+...+- ..++.++.+.++++..+...+..
T Consensus 79 --~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 79 --DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred --HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 12467988776542 24556677888888777544443
No 494
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=82.75 E-value=19 Score=27.44 Aligned_cols=89 Identities=9% Similarity=0.122 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCc-cHHH-HHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028016 68 PGMHALDIGSGT-GYLT-ACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~-~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
.+.+||-+|+|. |... ..+.+. | .+++.++.+. .+...+.... ..+.+........ ....+|
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~-g--a~V~VIs~~~--~~~l~~l~~~---------~~i~~~~~~~~~~--~l~~ad 72 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY-G--AHIVVISPEL--TENLVKLVEE---------GKIRWKQKEFEPS--DIVDAF 72 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C--CeEEEEcCCC--CHHHHHHHhC---------CCEEEEecCCChh--hcCCce
Confidence 467999999986 4332 234443 3 6788886432 1122222211 2455554433322 125689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 146 AIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|++....+.+-..+....+.+ .++-.
T Consensus 73 lViaaT~d~elN~~i~~~a~~~-~lvn~ 99 (202)
T PRK06718 73 LVIAATNDPRVNEQVKEDLPEN-ALFNV 99 (202)
T ss_pred EEEEcCCCHHHHHHHHHHHHhC-CcEEE
Confidence 9999888777766666666554 44433
No 495
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=82.64 E-value=12 Score=29.49 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=27.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChH
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPE 104 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~ 104 (215)
..+|+.+|+|. |+.+..++.+.|- ++++.+|.+.-
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGi-g~itlID~D~v 65 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGI-GRITLIDMDDV 65 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCC-CeEEEEecccc
Confidence 57899999997 8877777666555 78999997763
No 496
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=82.54 E-value=8 Score=32.78 Aligned_cols=34 Identities=29% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh
Q 028016 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP 103 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~ 103 (215)
..+||-+|||. |......+.+.|. ++++.+|.+.
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gv-g~i~lvD~D~ 76 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGV-GTLGIVEFDV 76 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCE
Confidence 57899999997 6655544444465 6888888543
No 497
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=82.45 E-value=13 Score=30.12 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=56.6
Q ss_pred CCEEEEEcC--CccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCC
Q 028016 69 GMHALDIGS--GTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 143 (215)
Q Consensus 69 ~~~vLdiG~--G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 143 (215)
+.+||-.|+ +.|..+..+++.. | .+++++..++...+.+++ + +. +.+--...+..... .....
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G--~~vi~~~~~~~~~~~l~~-~---g~------~~~~~~~~~~~~~i~~~~~~~ 216 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTG--LTVIATASRPESQEWVLE-L---GA------HHVIDHSKPLKAQLEKLGLEA 216 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCC--CEEEEEcCcHHHHHHHHH-c---CC------CEEEECCCCHHHHHHHhcCCC
Confidence 789998885 3477777888875 4 578998887776666643 2 21 11100000110000 11246
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+|+.............+.|+++|.++..
T Consensus 217 vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 217 VSYVFSLTHTDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred CCEEEEcCCcHHHHHHHHHHhccCCEEEEE
Confidence 999986543345567889999999999864
No 498
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=82.34 E-value=4.5 Score=32.68 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=56.0
Q ss_pred CCCCC-EEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC---CCCC
Q 028016 66 LKPGM-HALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR---KGWP 139 (215)
Q Consensus 66 ~~~~~-~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~---~~~~ 139 (215)
..++. +||-.|+ |. |..+..+++..| .+++.+..++...+.+++ .+.. .+ +...+.. ....
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G--~~vi~~~~~~~~~~~~~~----~g~~------~~-~~~~~~~~~~~~~~ 208 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLG--YEVVASTGKAEEEDYLKE----LGAS------EV-IDREDLSPPGKPLE 208 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHh----cCCc------EE-EccccHHHHHHHhc
Confidence 56677 9999997 44 778888888876 467777666665555532 2211 11 0000100 0111
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
. +.+|+|+....-. ....+.+.|+++|.++..
T Consensus 209 ~-~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~ 240 (323)
T TIGR02823 209 K-ERWAGAVDTVGGH-TLANVLAQLKYGGAVAAC 240 (323)
T ss_pred C-CCceEEEECccHH-HHHHHHHHhCCCCEEEEE
Confidence 1 3489887765533 467788999999998874
No 499
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=82.33 E-value=4.6 Score=31.55 Aligned_cols=99 Identities=16% Similarity=0.004 Sum_probs=58.7
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCC
Q 028016 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~ 139 (215)
.++++.+|+-.|+ | .|..+..+++..| .++++++.++...+.+++... ... ..+.....+... ...
T Consensus 105 ~~~~g~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~ 175 (293)
T cd05195 105 RLQKGESVLIHAAAGGVGQAAIQLAQHLG--AEVFATVGSEEKREFLRELGG--PVD-----HIFSSRDLSFADGILRAT 175 (293)
T ss_pred ccCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhCC--Ccc-----eEeecCchhHHHHHHHHh
Confidence 3678889998864 3 3777777888765 578888887776666654210 000 011100001100 011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028016 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
....+|+++....-. ......+.++++|.++..
T Consensus 176 ~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~ 208 (293)
T cd05195 176 GGRGVDVVLNSLSGE-LLRASWRCLAPFGRFVEI 208 (293)
T ss_pred CCCCceEEEeCCCch-HHHHHHHhcccCceEEEe
Confidence 124689888655443 667888999999998864
No 500
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=82.31 E-value=7.8 Score=32.09 Aligned_cols=88 Identities=11% Similarity=-0.063 Sum_probs=41.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHh--------C-------CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe--E
Q 028016 66 LKPGMHALDIGSGTGYLTACFALMV--------G-------PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL--S 128 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~--------~-------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v--~ 128 (215)
.....+|+|+||.+|..+..+.... . |.-+|+--|.-.+-....-+.+...... .....++ .
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~-~~~~~~~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQS-LKKFRNYFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHH-HHHTTSEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhc-cCCCceEEEE
Confidence 3444689999999999888654321 0 1137777786654333332222221000 0000222 3
Q ss_pred EEeCCCCCCCCCCCCccEEEEccCCC
Q 028016 129 VHVGDGRKGWPEFAPYDAIHVGAAAP 154 (215)
Q Consensus 129 ~~~~d~~~~~~~~~~~D~V~~~~~~~ 154 (215)
-+.+.+...+.+.++.|++++...+|
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alH 118 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALH 118 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TT
T ss_pred ecCchhhhccCCCCceEEEEEechhh
Confidence 34566666555558899998777553
Done!