BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028018
         (215 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MC4|A Chain A, Crystal Structure Of WwRSP5WWP DOMAIN: BACTERIAL
           TRANSFERASE Hexapeptide Repeat: Serine
           O-Acetyltransferase From Brucella Melitensis
 pdb|3MC4|B Chain B, Crystal Structure Of WwRSP5WWP DOMAIN: BACTERIAL
           TRANSFERASE Hexapeptide Repeat: Serine
           O-Acetyltransferase From Brucella Melitensis
          Length = 287

 Score = 31.2 bits (69), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 85  PSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRT-- 142
           P S    L+ V     +   +A EAT+    L   ++  +   PSL +A + RIA+R   
Sbjct: 19  PGSMNAGLDQVDPIWHSIRAEAEEATRNDPVLGAFLYATILNQPSLEEAVMHRIAERLGH 78

Query: 143 -KVLAEGGYEKIFRQSFDTVPE 163
             V A+     I RQ+FDT+ E
Sbjct: 79  PDVSAD-----ILRQTFDTMLE 95


>pdb|1N9G|B Chain B, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
           Heterodimer From Candida Tropicalis
 pdb|1N9G|D Chain D, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
           Heterodimer From Candida Tropicalis
 pdb|1N9G|E Chain E, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
           Heterodimer From Candida Tropicalis
          Length = 386

 Score = 26.9 bits (58), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 8   HQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAA 67
           +Q  T  +++     Q  EP    +    +ID +++AP       + +   P+ IN+   
Sbjct: 18  NQFRTMITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQG 77

Query: 68  T--TMPAESNPYVSPSPIEPSSSKNKLESVK 96
              + PA++  + +  P  P  ++   E +K
Sbjct: 78  VYPSKPAKTTGFGTTEPAAPCGNEGLFEVIK 108


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.123    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,642,231
Number of Sequences: 62578
Number of extensions: 247832
Number of successful extensions: 506
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 50
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.5 bits)