Query 028018
Match_columns 215
No_of_seqs 105 out of 125
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 05:00:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02893 GRAM: GRAM domain; I 98.8 1.8E-09 4E-14 75.0 2.5 50 152-201 1-50 (69)
2 smart00568 GRAM domain in gluc 98.5 6.8E-08 1.5E-12 65.7 3.2 41 160-201 2-42 (61)
3 PF14470 bPH_3: Bacterial PH d 86.9 0.79 1.7E-05 32.6 3.2 39 161-199 2-40 (96)
4 PF08498 Sterol_MT_C: Sterol m 80.8 1.2 2.5E-05 33.2 1.9 54 98-158 6-59 (67)
5 PF14844 PH_BEACH: PH domain a 49.6 21 0.00045 26.5 3.1 33 165-197 1-33 (106)
6 KOG2415 Electron transfer flav 37.4 11 0.00024 37.9 -0.0 36 123-158 346-383 (621)
7 PF08348 PAS_6: YheO-like PAS 34.4 77 0.0017 25.1 4.3 58 125-189 46-104 (118)
8 KOG3294 WW domain binding prot 30.5 38 0.00083 31.3 2.3 21 179-199 45-65 (261)
9 PF04326 AAA_4: Divergent AAA 27.5 33 0.00072 25.2 1.1 31 154-188 7-40 (122)
10 KOG4471 Phosphatidylinositol 3 27.2 53 0.0011 34.1 2.8 44 154-199 30-73 (717)
11 PF05553 DUF761: Cotton fibre 25.2 21 0.00045 24.1 -0.3 21 107-127 3-23 (38)
12 PF07676 PD40: WD40-like Beta 24.3 47 0.001 20.3 1.2 11 189-199 20-30 (39)
13 PF09150 Carot_N: Orange carot 22.4 27 0.00058 30.1 -0.2 65 88-167 11-75 (159)
14 COG1098 VacB Predicted RNA bin 21.1 21 0.00045 30.0 -1.1 34 112-147 38-78 (129)
15 KOG2196 Nuclear porin [Nuclear 21.1 3.2E+02 0.0069 25.4 6.3 64 77-140 58-129 (254)
16 smart00790 AFOR_N Aldehyde fer 20.3 58 0.0013 28.3 1.4 74 116-201 9-82 (199)
No 1
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=98.83 E-value=1.8e-09 Score=75.01 Aligned_cols=50 Identities=38% Similarity=0.572 Sum_probs=32.6
Q ss_pred ceeeecccCCcchhhhcccceeeecCCcceeeeEEEecCcEEEeeCCCcc
Q 028018 152 KIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLS 201 (215)
Q Consensus 152 kiFkQ~F~v~p~EkLlKa~aCYLSTsaGPVaG~LyiST~kvAFCSDrpl~ 201 (215)
+-|++.|...++|+|...|.|+|..+.+|+.|.||||+.+|.|+|+....
T Consensus 1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~ 50 (69)
T PF02893_consen 1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGS 50 (69)
T ss_dssp ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS
T ss_pred CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCC
Confidence 35999999999999999999999999999999999999999999976543
No 2
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=98.54 E-value=6.8e-08 Score=65.71 Aligned_cols=41 Identities=49% Similarity=0.808 Sum_probs=36.8
Q ss_pred CCcchhhhcccceeeecCCcceeeeEEEecCcEEEeeCCCcc
Q 028018 160 TVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLS 201 (215)
Q Consensus 160 v~p~EkLlKa~aCYLSTsaGPVaG~LyiST~kvAFCSDrpl~ 201 (215)
..++|+|...|.|||+ +.+|+.|.||||+.+|.|+|+.+-.
T Consensus 2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~ 42 (61)
T smart00568 2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGK 42 (61)
T ss_pred cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCC
Confidence 4589999999999999 6799999999999999999976543
No 3
>PF14470 bPH_3: Bacterial PH domain
Probab=86.92 E-value=0.79 Score=32.57 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=34.4
Q ss_pred CcchhhhcccceeeecCCcceeeeEEEecCcEEEeeCCC
Q 028018 161 VPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDP 199 (215)
Q Consensus 161 ~p~EkLlKa~aCYLSTsaGPVaG~LyiST~kvAFCSDrp 199 (215)
.+||+.+-...|.+-...+.-.|+|+++++||-||+-..
T Consensus 2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~ 40 (96)
T PF14470_consen 2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGM 40 (96)
T ss_pred cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEccc
Confidence 579999999999888777888999999999999998753
No 4
>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process
Probab=80.83 E-value=1.2 Score=33.16 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=43.1
Q ss_pred HHhhhhhhhHHHhHhhhhhccccccccccCCChHHHHHHHHhhhhHHHhhccccceeeecc
Q 028018 98 ALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSF 158 (215)
Q Consensus 98 ~ln~~gkk~~e~trKae~~a~~iw~Hlk~gpsiseta~GKLslGaKil~eGG~ekiFkQ~F 158 (215)
+|++|||. .-...-++-|-|++.|+=+-.+.--|..++.-|.+||-++||--.|
T Consensus 6 r~t~~Gr~-------~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPMy 59 (67)
T PF08498_consen 6 RMTWLGRF-------ITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPMY 59 (67)
T ss_pred eccHHHHH-------HHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCchh
Confidence 36778875 2333345568899999999999999999999999999999996543
No 5
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=49.61 E-value=21 Score=26.52 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=27.4
Q ss_pred hhhcccceeeecCCcceeeeEEEecCcEEEeeC
Q 028018 165 QLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSD 197 (215)
Q Consensus 165 kLlKa~aCYLSTsaGPVaG~LyiST~kvAFCSD 197 (215)
|++-++.|-+=|.-+-+-|.|.|.+..|-|..|
T Consensus 1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~ 33 (106)
T PF14844_consen 1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPN 33 (106)
T ss_dssp --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE-
T ss_pred CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEEC
Confidence 345678999999999999999999999999998
No 6
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=37.36 E-value=11 Score=37.90 Aligned_cols=36 Identities=36% Similarity=0.641 Sum_probs=31.1
Q ss_pred ccccCCChHHHHHH--HHhhhhHHHhhccccceeeecc
Q 028018 123 HLKTGPSLADAAVG--RIAQRTKVLAEGGYEKIFRQSF 158 (215)
Q Consensus 123 Hlk~gpsiseta~G--KLslGaKil~eGG~ekiFkQ~F 158 (215)
-+|.-|+|+....| +|.-|||.|-|||+..|=+-.|
T Consensus 346 k~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~F 383 (621)
T KOG2415|consen 346 KMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVF 383 (621)
T ss_pred HhhcCcchhhhhcCcceeeehhhhhccCCcccCccccc
Confidence 35667999999988 7999999999999999987766
No 7
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=34.36 E-value=77 Score=25.14 Aligned_cols=58 Identities=17% Similarity=0.343 Sum_probs=46.0
Q ss_pred ccCCChHHHHHHHHhhhhHHHhhcc-ccceeeecccCCcchhhhcccceeeecCCcceeeeEEEec
Q 028018 125 KTGPSLADAAVGRIAQRTKVLAEGG-YEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLST 189 (215)
Q Consensus 125 k~gpsiseta~GKLslGaKil~eGG-~ekiFkQ~F~v~p~EkLlKa~aCYLSTsaGPVaG~LyiST 189 (215)
+.|-.+++- +-++|+++. -+..+...+...++-|++|++-.++--..|=+.|+|=|-.
T Consensus 46 ~vGdp~t~~-------~l~~l~~~~~~~~~~~nY~~~~~~Gk~lrSsT~~Ird~~g~~iG~LCIN~ 104 (118)
T PF08348_consen 46 KVGDPITDL-------ALELLKEKQYEEDYIINYKTKTKDGKILRSSTFFIRDENGKLIGALCINF 104 (118)
T ss_pred ccCCchhHH-------HHHHHhccccCCCccccccccCCCCCEEEEEEEEEECCCCCEEEEEEEEe
Confidence 667777765 556677766 3566777888888889999999999999999999997753
No 8
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=30.49 E-value=38 Score=31.33 Aligned_cols=21 Identities=38% Similarity=0.782 Sum_probs=17.7
Q ss_pred cceeeeEEEecCcEEEeeCCC
Q 028018 179 GPVVGVLYLSTAKLAFCSDDP 199 (215)
Q Consensus 179 GPVaG~LyiST~kvAFCSDrp 199 (215)
|=--|+|||++.||-|-|+.+
T Consensus 45 g~kkGtlyLTs~RiIFis~~~ 65 (261)
T KOG3294|consen 45 GTKKGTLYLTSHRIIFISSKP 65 (261)
T ss_pred cceeeeEEeecceEEEecCCC
Confidence 345699999999999998874
No 9
>PF04326 AAA_4: Divergent AAA domain; InterPro: IPR007421 AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate. This entry is related to IPR003959 from INTERPRO, and presumably has the same function (ATP-binding). A number of the archaeal members of this group are annotated as ATP-dependent DNA helicases 3.6.1 from EC.; GO: 0005524 ATP binding; PDB: 2KYY_A 3LMM_D.
Probab=27.52 E-value=33 Score=25.18 Aligned_cols=31 Identities=23% Similarity=0.549 Sum_probs=22.3
Q ss_pred eeecccCCcchh---hhcccceeeecCCcceeeeEEEe
Q 028018 154 FRQSFDTVPEEQ---LLKTYACYLSTSAGPVVGVLYLS 188 (215)
Q Consensus 154 FkQ~F~v~p~Ek---LlKa~aCYLSTsaGPVaG~LyiS 188 (215)
||+.+......+ |.|+..|++-| .| |+|+|-
T Consensus 7 fK~~~~~~~~~~~~~i~k~i~AfaN~-~G---G~iiiG 40 (122)
T PF04326_consen 7 FKESLNKSSKKGKKEIAKTICAFANT-EG---GYIIIG 40 (122)
T ss_dssp EE-GCCTCCCTEE--HHHHHHHHHCS-TT---EEEEET
T ss_pred EEecCCCCccchHHHHHHHHHHHhCC-CC---CEEEEE
Confidence 677776655544 99999999988 44 888873
No 10
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.21 E-value=53 Score=34.07 Aligned_cols=44 Identities=30% Similarity=0.493 Sum_probs=34.5
Q ss_pred eeecccCCcchhhhcccceeeecCCcceeeeEEEecCcEEEeeCCC
Q 028018 154 FRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDP 199 (215)
Q Consensus 154 FkQ~F~v~p~EkLlKa~aCYLSTsaGPVaG~LyiST~kvAFCSDrp 199 (215)
..--|...+||.++.-- |+.-=-|++.|+|.||+-|+=|-|.-.
T Consensus 30 ~~~~~~~L~GE~i~~~~--y~c~f~G~~~g~l~lsNyRl~fks~~t 73 (717)
T KOG4471|consen 30 LQVPFPLLPGESIIDEK--YICPFLGAVDGTLALSNYRLYFKSKET 73 (717)
T ss_pred ccCcccccCCcccccce--ecccccccccceEEeeeeEEEEEeccC
Confidence 56678899999884322 555567899999999999999988543
No 11
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=25.21 E-value=21 Score=24.11 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.8
Q ss_pred HHHhHhhhhhccccccccccC
Q 028018 107 AEATKRAEDLAGNMWQHLKTG 127 (215)
Q Consensus 107 ~e~trKae~~a~~iw~Hlk~g 127 (215)
.++-++||.|-.+++++||+-
T Consensus 3 ~evd~rAe~FI~~f~~qlrlq 23 (38)
T PF05553_consen 3 DEVDRRAEEFIAKFREQLRLQ 23 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 356678999999999999875
No 12
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=24.27 E-value=47 Score=20.27 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=9.1
Q ss_pred cCcEEEeeCCC
Q 028018 189 TAKLAFCSDDP 199 (215)
Q Consensus 189 T~kvAFCSDrp 199 (215)
.++|+|||+|.
T Consensus 20 Gk~i~f~s~~~ 30 (39)
T PF07676_consen 20 GKYIYFTSNRN 30 (39)
T ss_dssp SSEEEEEEECT
T ss_pred CCEEEEEecCC
Confidence 46899999986
No 13
>PF09150 Carot_N: Orange carotenoid protein, N-terminal ; InterPro: IPR015233 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Orange carotenoid-binding proteins (OCP) were first identified in cyanobacterial species, where they occur associated with phycobilisome in the cellular thylakoid membrane. These proteins function in photoprotection, and are essential for inhibiting white and blue-green light non-photochemical quenching (NPQ) [, ]. Carotenoids improve the photoprotectant activity by broadening OCP's absorption spectrum and facilitating the dissipation of absorbed energy. OCP acts as a homodimer, and binds one molecule of carotenoid (3'-hydroxyechinenone) and one chloride ion per subunit, where the carotenoid binding site is lined with a striking number of methionine residues. The carotenoid 3'-hydroxyechinenone is not found in higher plants. OCP has two domains: an N-terminal helical domain and a C-terminal domain that resembles a NTF2 (nuclear transport factor 2) domain. OCP can be proteolytically cleaved into a red form (RCP), which lacks 15 residues from the N terminus and approximately 150 residues from the C terminus []. This entry represents the N-terminal domain found predominantly in prokaryotic orange carotenoid proteins and related carotenoid-binding proteins. It adopts an alpha-helical structure consisting of two four-helix bundles [].; GO: 0031404 chloride ion binding, 0016037 light absorption, 0030089 phycobilisome; PDB: 3MG3_B 3MG1_A 3MG2_A 1M98_A.
Probab=22.36 E-value=27 Score=30.15 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=39.3
Q ss_pred CcchHHHHHHHHhhhhhhhHHHhHhhhhhccccccccccCCChHHHHHHHHhhhhHHHhhccccceeeecccCCcchhhh
Q 028018 88 SKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLL 167 (215)
Q Consensus 88 s~~~~e~v~~~ln~~gkk~~e~trKae~~a~~iw~Hlk~gpsiseta~GKLslGaKil~eGG~ekiFkQ~F~v~p~EkLl 167 (215)
..+.+..+...|++.+- -|.||==-.--.++|.+|+.++-|--+..- -|.+|.|+.....+|+|.
T Consensus 11 ~~~~v~~~~~~F~~Ls~--------DdqLAlLWf~Y~emG~sItpAapgaa~~~~-------ae~ll~qik~ms~~EQlq 75 (159)
T PF09150_consen 11 QADAVPAAVARFNQLSV--------DDQLALLWFAYTEMGDSITPAAPGAARMQL-------AEGLLNQIKQMSQEEQLQ 75 (159)
T ss_dssp B-THHHHHHHHHCCS-H--------HHHHHHHHHHHHHHCCC-------HHHHHH-------HHHHHHHHHCS-HHHHHH
T ss_pred cchhHHHHHHHHHcCCH--------HHHHHHHHHHHHHhccccCCCCCCcccHHH-------HHHHHHHHHhCCHHHHHH
Confidence 35678888888888763 234443333457999999999998775533 467899999999999985
No 14
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=21.14 E-value=21 Score=30.01 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=29.5
Q ss_pred hhhhhccccccccccCCCh-------HHHHHHHHhhhhHHHhh
Q 028018 112 RAEDLAGNMWQHLKTGPSL-------ADAAVGRIAQRTKVLAE 147 (215)
Q Consensus 112 Kae~~a~~iw~Hlk~gpsi-------seta~GKLslGaKil~e 147 (215)
-|++++.+|.+||+.|..+ .| .|||+|--|-+.+
T Consensus 38 Ia~~fVkdI~d~L~vG~eV~vKVl~ide--~GKisLSIr~~~e 78 (129)
T COG1098 38 IADGFVKDIHDHLKVGQEVKVKVLDIDE--NGKISLSIRKLEE 78 (129)
T ss_pred hhhhhHHhHHHHhcCCCEEEEEEEeecc--CCCcceehHHhhh
Confidence 4789999999999999864 44 8999999999887
No 15
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=21.11 E-value=3.2e+02 Score=25.41 Aligned_cols=64 Identities=19% Similarity=0.402 Sum_probs=43.3
Q ss_pred ccccCCCCCCCCcchHHHHHHHHhhhhhhhHHHhHhhhhhcc--ccccc--cccCCChH----HHHHHHHhh
Q 028018 77 YVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAG--NMWQH--LKTGPSLA----DAAVGRIAQ 140 (215)
Q Consensus 77 Yv~~sp~~~s~s~~~~e~v~~~ln~~gkk~~e~trKae~~a~--~iw~H--lk~gpsis----eta~GKLsl 140 (215)
+....|..+.++.-..-.+-+.+|+|.-.+.+..|-=...+- |-|.| |+.|++|+ |.+|-++++
T Consensus 58 ~~st~p~~~~~s~l~~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~q 129 (254)
T KOG2196|consen 58 DTSTKPSEPAPSSLTYKTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQ 129 (254)
T ss_pred ccccCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHH
Confidence 333334333444555677889999999988888776665554 67888 68899986 556655544
No 16
>smart00790 AFOR_N Aldehyde ferredoxin oxidoreductase, N-terminal domain. Enzymes of the aldehyde ferredoxin oxidoreductase (AOR) family PUBMED:9242907 contain a tungsten cofactor and an 4Fe4S cluster and catalyse the interconversion of aldehydes to carboxylates PUBMED:8672295. This family includes AOR, formaldehyde ferredoxin oxidoreductase (FOR), glyceraldehyde-3-phosphate ferredoxin oxidoreductase (GAPOR), all isolated from hyperthermophilic archea PUBMED:9242907; carboxylic acid reductase found in clostridia PUBMED:2550230; and hydroxycarboxylate viologen oxidoreductase from Proteus vulgaris, the sole member of the AOR family containing molybdenum PUBMED:8026480. GAPOR may be involved in glycolysis PUBMED:7721730, but the functions of the other proteins are not yet clear. AOR has been proposed to be the primary enzyme responsible for oxidising the aldehydes that are produced by the 2-keto acid oxidoreductases PUBMED:9275170.
Probab=20.33 E-value=58 Score=28.33 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=50.5
Q ss_pred hccccccccccCCChHHHHHHHHhhhhHHHhhccccceeeecccCCcchhhhcccceeeecCCcceeeeEEEecCcEEEe
Q 028018 116 LAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFC 195 (215)
Q Consensus 116 ~a~~iw~Hlk~gpsiseta~GKLslGaKil~eGG~ekiFkQ~F~v~p~EkLlKa~aCYLSTsaGPVaG~LyiST~kvAFC 195 (215)
+..+-++...+-+.+-+...|=.-+|+++|.+ .+-..+=-..|+-+| -=.+||+.|+.+-.+-|+.|+
T Consensus 9 Ls~~~~~~~~~~~~~~~~~lGG~Gl~~~ll~~----~~~~~~dpl~peN~l--------i~~~GpL~Gt~~p~s~R~~v~ 76 (199)
T smart00790 9 LTTRKVEVEELPEELARKYLGGRGLGVKLLYE----EVDPEVDPLSPENKL--------IFATGPLTGTPAPGSGRLVVV 76 (199)
T ss_pred CCCCeEEEEeCCHHHHHhccCHHHHHHHHHHh----ccCCCCCCCCCCCEE--------EEEccCccCCCcCCCCEEEEE
Confidence 33344455555666667778888999999965 222222233444443 235899999989999999999
Q ss_pred eCCCcc
Q 028018 196 SDDPLS 201 (215)
Q Consensus 196 SDrpl~ 201 (215)
+-.||+
T Consensus 77 ~kSPlT 82 (199)
T smart00790 77 AKSPLT 82 (199)
T ss_pred EECCCC
Confidence 999986
Done!