Query 028018
Match_columns 215
No_of_seqs 105 out of 125
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 07:34:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 80.6 1.2 4E-05 42.3 3.7 41 157-197 6-48 (528)
2 1lw3_A Myotubularin-related pr 69.9 3.1 0.0001 40.7 3.6 41 157-197 78-120 (657)
3 1zyi_A Methylosome subunit pic 35.3 25 0.00087 28.8 3.0 29 170-199 32-60 (171)
4 2aze_B Transcription factor E2 30.2 18 0.00061 27.5 1.2 15 168-182 85-99 (106)
5 2cay_A VPS36 PH domain, vacuol 20.1 66 0.0022 25.4 2.8 21 178-198 48-68 (145)
6 2kyy_A Possible ATP-dependent 17.6 40 0.0014 25.8 1.0 30 154-188 22-53 (153)
7 2yru_A Steroid receptor RNA ac 16.8 1E+02 0.0036 23.6 3.2 41 106-151 38-78 (118)
8 2hth_B Vacuolar protein sortin 16.8 80 0.0027 24.5 2.5 19 179-197 36-54 (140)
9 3tn2_A C-C motif chemokine 4; 15.9 1.4E+02 0.0047 20.7 3.3 29 171-199 26-55 (68)
10 2wb6_A AFV1-102; archaeal viru 15.6 53 0.0018 26.0 1.2 17 182-198 62-87 (130)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=80.57 E-value=1.2 Score=42.30 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=32.1
Q ss_pred cccCCcchhhhcccc--eeeecCCcceeeeEEEecCcEEEeeC
Q 028018 157 SFDTVPEEQLLKTYA--CYLSTSAGPVVGVLYLSTAKLAFCSD 197 (215)
Q Consensus 157 ~F~v~p~EkLlKa~a--CYLSTsaGPVaG~LyiST~kvAFCSD 197 (215)
-|...|||.++..-. =|+.--.|++.|+|||++-||.|.++
T Consensus 6 ~~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~ 48 (528)
T 1zsq_A 6 EPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSM 48 (528)
T ss_dssp CCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEES
T ss_pred CCccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEcc
Confidence 366789999985521 15555568999999999999999984
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=69.88 E-value=3.1 Score=40.71 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=32.0
Q ss_pred cccCCcchhhhcccc--eeeecCCcceeeeEEEecCcEEEeeC
Q 028018 157 SFDTVPEEQLLKTYA--CYLSTSAGPVVGVLYLSTAKLAFCSD 197 (215)
Q Consensus 157 ~F~v~p~EkLlKa~a--CYLSTsaGPVaG~LyiST~kvAFCSD 197 (215)
-|...|||.++..-. =|+.--.|++.|+|||++-||.|.+.
T Consensus 78 ~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~ 120 (657)
T 1lw3_A 78 EPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSM 120 (657)
T ss_dssp CCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEES
T ss_pred CCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEec
Confidence 477899999995421 14444468999999999999999984
No 3
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=35.26 E-value=25 Score=28.82 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=22.1
Q ss_pred cceeeecCCcceeeeEEEecCcEEEeeCCC
Q 028018 170 YACYLSTSAGPVVGVLYLSTAKLAFCSDDP 199 (215)
Q Consensus 170 ~aCYLSTsaGPVaG~LyiST~kvAFCSDrp 199 (215)
-++||-.. ..-.|+|||++.||.|-|+..
T Consensus 32 v~~vl~~~-~~g~GtLyVt~~~l~W~~~~~ 60 (171)
T 1zyi_A 32 TEAVLNGK-GLGTGTLYIAESRLSWLDGSG 60 (171)
T ss_dssp EEEEBTTB-CCCEEEEEEETTEEEEEETTT
T ss_pred EEEEECCC-ccCceEEEEEcCEEEEEcCCC
Confidence 45777653 234599999999999998854
No 4
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=30.18 E-value=18 Score=27.48 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=13.6
Q ss_pred cccceeeecCCccee
Q 028018 168 KTYACYLSTSAGPVV 182 (215)
Q Consensus 168 Ka~aCYLSTsaGPVa 182 (215)
+.|++||.++.|||-
T Consensus 85 ~~yqi~LkS~~GPId 99 (106)
T 2aze_B 85 ENFQISLKSKQGPID 99 (106)
T ss_dssp SCEEEEEECSSSCCE
T ss_pred cceEEEEECCCCCEE
Confidence 589999999999984
No 5
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=20.13 E-value=66 Score=25.35 Aligned_cols=21 Identities=14% Similarity=0.419 Sum_probs=17.7
Q ss_pred CcceeeeEEEecCcEEEeeCC
Q 028018 178 AGPVVGVLYLSTAKLAFCSDD 198 (215)
Q Consensus 178 aGPVaG~LyiST~kvAFCSDr 198 (215)
.+--.|.|||+|.||-|-.+.
T Consensus 48 ~~~k~G~lyLTshRIIyv~~~ 68 (145)
T 2cay_A 48 LQRQRGRIFLTSQRIIYIDDA 68 (145)
T ss_dssp TTCSSEEEEEESSEEEEEESS
T ss_pred cCCCccEEEEEcCeEEEecCC
Confidence 466889999999999997653
No 6
>2kyy_A Possible ATP-dependent DNA helicase RECG-related; structural genomics, northeast structural genomics consortiu AAA_4 domain, PSI-2; NMR {Nitrosomonas europaea}
Probab=17.63 E-value=40 Score=25.80 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=22.2
Q ss_pred eeecccCCcchhhhcccceeeec--CCcceeeeEEEe
Q 028018 154 FRQSFDTVPEEQLLKTYACYLST--SAGPVVGVLYLS 188 (215)
Q Consensus 154 FkQ~F~v~p~EkLlKa~aCYLST--saGPVaG~LyiS 188 (215)
||+.+. ..++|.|+..|+.-+ +.| |.|+|-
T Consensus 22 fK~~~~--~~~~l~k~i~AFAN~~~~~G---G~iiiG 53 (153)
T 2kyy_A 22 AKRASD--MGKSVMETVIAFANEPGLDG---GYLLLG 53 (153)
T ss_dssp EECGGG--TTHHHHHHHHHHHTCTTCCC---EEEEES
T ss_pred EeecCC--CHHHHHHHHhhhhCCCCCCC---CEEEEE
Confidence 787776 346788888888885 555 888874
No 7
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=16.81 E-value=1e+02 Score=23.60 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=32.4
Q ss_pred hHHHhHhhhhhccccccccccCCChHHHHHHHHhhhhHHHhhcccc
Q 028018 106 AAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYE 151 (215)
Q Consensus 106 ~~e~trKae~~a~~iw~Hlk~gpsiseta~GKLslGaKil~eGG~e 151 (215)
++|+.|+-+.| ..||+-|- |++.+..+|.+=++.|+.|=|+
T Consensus 38 ~~D~~KRL~~L----fdkLn~~~-Ls~~v~~~L~~l~~al~~~dy~ 78 (118)
T 2yru_A 38 CDDISRRLALL----REQWAGGK-LSIPVKKRMALLVQELLHHQWD 78 (118)
T ss_dssp HHHHHHHHHHH----HHHHHHTC-SCHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHH----HHHHhcCC-CCHHHHHHHHHHHHHHHcCCHH
Confidence 57777776665 46777664 7999999999999999998765
No 8
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=16.76 E-value=80 Score=24.55 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=16.2
Q ss_pred cceeeeEEEecCcEEEeeC
Q 028018 179 GPVVGVLYLSTAKLAFCSD 197 (215)
Q Consensus 179 GPVaG~LyiST~kvAFCSD 197 (215)
.=--|.|||+|.||-|-.+
T Consensus 36 ~~k~G~l~LTshRli~~d~ 54 (140)
T 2hth_B 36 KFDAGTLLLSTHRLIWRDQ 54 (140)
T ss_dssp CCCCEEEEEESSEEEEEET
T ss_pred CCcCCEEEEecCEEEEecC
Confidence 4478999999999999754
No 9
>3tn2_A C-C motif chemokine 4; cytokine; 1.60A {Homo sapiens} PDB: 1hum_A 1hun_A 2x6l_A 3kkh_A 1je4_A 2ffk_B 2fin_B
Probab=15.87 E-value=1.4e+02 Score=20.68 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=21.7
Q ss_pred ceeeecCC-cceeeeEEEecCcEEEeeCCC
Q 028018 171 ACYLSTSA-GPVVGVLYLSTAKLAFCSDDP 199 (215)
Q Consensus 171 aCYLSTsa-GPVaG~LyiST~kvAFCSDrp 199 (215)
..|.-|++ =|+-|++|+.-+.--+|.|-.
T Consensus 26 ~~y~~tss~C~~~aVIf~tk~gr~iCadP~ 55 (68)
T 3tn2_A 26 VDYYETSSLCSQPAVVFQTKRSKQVCADPS 55 (68)
T ss_dssp EEEEECCTTSSSCCEEEEETTSCEEEECTT
T ss_pred eEEEECCCCCCCCeEEEEECCCCEEeCCCC
Confidence 44555654 489999999888888998853
No 10
>2wb6_A AFV1-102; archaeal virus, viral protein; 1.95A {Acidianus filamentous virus 1}
Probab=15.63 E-value=53 Score=25.99 Aligned_cols=17 Identities=35% Similarity=0.745 Sum_probs=14.1
Q ss_pred eeeEEEecCcE---------EEeeCC
Q 028018 182 VGVLYLSTAKL---------AFCSDD 198 (215)
Q Consensus 182 aG~LyiST~kv---------AFCSDr 198 (215)
..++|+|.+|| |.|||-
T Consensus 62 gsmiflsservkladwkqlgamcsdc 87 (130)
T 2wb6_A 62 GSMIFLSSERVKLADWKQLGAMCSDC 87 (130)
T ss_dssp TTEEEEEESSSCCHHHHHTTCEEEET
T ss_pred ccEEEEecceeehhhHHHHhhhhccc
Confidence 35799999998 789995
Done!