Query 028019
Match_columns 215
No_of_seqs 166 out of 1415
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0703 AroK Shikimate kinase 100.0 3.7E-29 8E-34 207.5 13.9 117 93-210 2-121 (172)
2 PLN02199 shikimate kinase 100.0 3.6E-28 7.7E-33 216.7 16.1 148 52-202 62-211 (303)
3 PRK13948 shikimate kinase; Pro 99.9 1.6E-24 3.5E-29 181.3 14.7 113 90-203 7-120 (182)
4 PRK00625 shikimate kinase; Pro 99.9 2E-23 4.4E-28 173.2 13.9 114 94-209 1-120 (173)
5 PRK13949 shikimate kinase; Pro 99.9 8.4E-23 1.8E-27 168.3 14.9 108 94-202 2-110 (169)
6 PRK14021 bifunctional shikimat 99.9 1.2E-22 2.5E-27 194.5 14.4 110 92-202 5-119 (542)
7 PF01202 SKI: Shikimate kinase 99.9 5.8E-23 1.2E-27 166.7 10.4 100 102-202 1-101 (158)
8 PRK13946 shikimate kinase; Pro 99.9 4.7E-22 1E-26 165.1 14.5 117 89-206 6-124 (184)
9 PRK05057 aroK shikimate kinase 99.9 6E-22 1.3E-26 163.4 14.5 117 92-209 3-121 (172)
10 PRK13947 shikimate kinase; Pro 99.9 8.4E-22 1.8E-26 159.9 14.1 114 94-208 2-117 (171)
11 PRK00131 aroK shikimate kinase 99.9 1.9E-20 4.2E-25 150.7 15.1 111 91-202 2-113 (175)
12 PRK03731 aroL shikimate kinase 99.8 1.5E-20 3.3E-25 152.9 13.5 107 94-202 3-110 (171)
13 cd00464 SK Shikimate kinase (S 99.8 7.2E-20 1.6E-24 145.3 13.7 111 95-206 1-113 (154)
14 PRK13951 bifunctional shikimat 99.8 4.6E-20 9.9E-25 174.8 14.4 113 95-208 2-115 (488)
15 PRK08154 anaerobic benzoate ca 99.8 2.2E-18 4.8E-23 154.4 14.2 110 92-202 132-243 (309)
16 PRK03839 putative kinase; Prov 99.6 5.6E-15 1.2E-19 121.4 8.3 100 95-207 2-102 (180)
17 PRK09169 hypothetical protein; 99.5 4.2E-14 9.2E-19 149.2 11.6 115 84-202 2101-2216(2316)
18 PRK06217 hypothetical protein; 99.5 1.1E-13 2.4E-18 114.5 9.7 101 94-205 2-104 (183)
19 PRK14530 adenylate kinase; Pro 99.5 3.9E-13 8.4E-18 113.9 12.8 112 92-207 2-128 (215)
20 PRK14532 adenylate kinase; Pro 99.5 1.9E-13 4.2E-18 112.8 10.2 106 95-205 2-127 (188)
21 TIGR01313 therm_gnt_kin carboh 99.4 9.3E-13 2E-17 106.2 10.9 104 96-206 1-115 (163)
22 PRK08118 topology modulation p 99.4 1.1E-12 2.3E-17 108.0 11.0 93 94-202 2-95 (167)
23 KOG3354 Gluconate kinase [Carb 99.4 4.6E-13 9.9E-18 110.1 7.6 115 93-211 12-146 (191)
24 PRK05541 adenylylsulfate kinas 99.4 2.6E-12 5.7E-17 105.1 10.7 109 92-205 6-121 (176)
25 PF01583 APS_kinase: Adenylyls 99.4 2.3E-12 5E-17 105.8 10.3 110 92-208 1-122 (156)
26 PRK04182 cytidylate kinase; Pr 99.4 8.2E-12 1.8E-16 101.1 12.0 100 94-202 1-108 (180)
27 COG1102 Cmk Cytidylate kinase 99.4 1.1E-11 2.3E-16 102.5 11.6 101 94-202 1-107 (179)
28 cd02021 GntK Gluconate kinase 99.3 6.2E-12 1.3E-16 100.0 9.6 105 95-205 1-118 (150)
29 COG3265 GntK Gluconate kinase 99.3 4E-12 8.7E-17 103.6 8.2 104 99-209 1-117 (161)
30 PF13671 AAA_33: AAA domain; P 99.3 6.3E-12 1.4E-16 98.4 9.2 110 95-208 1-121 (143)
31 cd01428 ADK Adenylate kinase ( 99.3 1.3E-11 2.8E-16 101.4 11.4 110 95-208 1-128 (194)
32 PLN02674 adenylate kinase 99.3 7.7E-12 1.7E-16 109.4 10.2 110 91-206 29-159 (244)
33 TIGR01359 UMP_CMP_kin_fam UMP- 99.3 2E-11 4.4E-16 99.9 11.7 109 95-207 1-126 (183)
34 COG0529 CysC Adenylylsulfate k 99.3 1.5E-11 3.2E-16 103.1 10.9 116 85-208 15-143 (197)
35 PRK05537 bifunctional sulfate 99.3 4.2E-12 9.1E-17 122.7 8.1 120 75-206 369-512 (568)
36 TIGR01360 aden_kin_iso1 adenyl 99.3 2E-11 4.4E-16 99.6 10.9 39 93-131 3-41 (188)
37 PRK10078 ribose 1,5-bisphospho 99.3 3.9E-12 8.5E-17 105.5 6.6 113 93-207 2-133 (186)
38 PRK14531 adenylate kinase; Pro 99.3 4.2E-11 9E-16 99.2 12.1 113 93-208 2-131 (183)
39 PRK00279 adk adenylate kinase; 99.3 4.1E-11 8.9E-16 101.5 11.8 110 94-207 1-129 (215)
40 cd02020 CMPK Cytidine monophos 99.3 3.2E-11 7E-16 94.4 10.2 97 95-202 1-99 (147)
41 TIGR01351 adk adenylate kinase 99.3 4.2E-11 9.1E-16 101.1 11.5 108 95-206 1-125 (210)
42 KOG3347 Predicted nucleotide k 99.3 2.7E-12 5.8E-17 105.0 3.9 106 92-212 6-120 (176)
43 PRK06762 hypothetical protein; 99.3 2E-11 4.2E-16 98.8 8.9 105 93-206 2-117 (166)
44 TIGR03575 selen_PSTK_euk L-ser 99.3 7.2E-12 1.6E-16 114.2 6.0 95 96-202 2-118 (340)
45 PTZ00088 adenylate kinase 1; P 99.2 9.5E-11 2.1E-15 101.4 11.8 41 92-132 5-45 (229)
46 PRK00889 adenylylsulfate kinas 99.2 8.7E-11 1.9E-15 96.0 10.8 107 92-204 3-118 (175)
47 PRK07261 topology modulation p 99.2 5E-11 1.1E-15 98.2 9.3 94 94-202 1-95 (171)
48 PRK14527 adenylate kinase; Pro 99.2 1.7E-10 3.8E-15 95.9 12.0 113 92-207 5-134 (191)
49 PHA02530 pseT polynucleotide k 99.2 9.5E-11 2.1E-15 103.2 10.9 111 93-206 2-124 (300)
50 TIGR02173 cyt_kin_arch cytidyl 99.2 2.4E-10 5.1E-15 92.0 12.2 103 94-202 1-108 (171)
51 PRK06547 hypothetical protein; 99.2 1.2E-11 2.7E-16 102.5 4.8 113 91-205 13-138 (172)
52 PRK13808 adenylate kinase; Pro 99.2 1.7E-10 3.7E-15 105.0 11.8 108 94-205 1-127 (333)
53 PRK01184 hypothetical protein; 99.2 1.6E-10 3.6E-15 95.0 10.7 111 94-208 2-127 (184)
54 PF13207 AAA_17: AAA domain; P 99.2 3.8E-11 8.3E-16 91.7 5.8 34 95-128 1-34 (121)
55 PRK02496 adk adenylate kinase; 99.2 3.6E-10 7.8E-15 93.1 11.7 110 94-207 2-130 (184)
56 TIGR03574 selen_PSTK L-seryl-t 99.2 2.1E-10 4.6E-15 99.2 10.5 104 95-206 1-117 (249)
57 cd00227 CPT Chloramphenicol (C 99.2 2.8E-10 6.2E-15 93.3 10.7 110 92-206 1-132 (175)
58 PLN02200 adenylate kinase fami 99.2 3.3E-10 7.2E-15 98.1 11.6 111 92-206 42-167 (234)
59 PRK14528 adenylate kinase; Pro 99.1 6.1E-10 1.3E-14 92.8 12.3 39 94-132 2-40 (186)
60 PRK13975 thymidylate kinase; P 99.1 1E-10 2.2E-15 96.7 6.4 108 93-206 2-135 (196)
61 COG1936 Predicted nucleotide k 99.1 6E-11 1.3E-15 98.8 4.3 103 94-212 1-110 (180)
62 PRK11545 gntK gluconate kinase 99.1 5.7E-10 1.2E-14 91.2 10.0 100 99-206 1-112 (163)
63 PRK03846 adenylylsulfate kinas 99.1 9.9E-10 2.1E-14 92.0 11.6 108 90-203 21-139 (198)
64 PRK09825 idnK D-gluconate kina 99.1 2.1E-09 4.5E-14 89.2 12.0 106 92-206 2-120 (176)
65 PLN02459 probable adenylate ki 99.0 2.8E-09 6E-14 94.2 11.9 109 94-206 30-154 (261)
66 cd02027 APSK Adenosine 5'-phos 99.0 1.7E-09 3.8E-14 87.1 9.8 106 95-206 1-117 (149)
67 TIGR00455 apsK adenylylsulfate 99.0 3.5E-09 7.5E-14 87.3 11.6 108 91-204 16-134 (184)
68 PRK04040 adenylate kinase; Pro 99.0 2.8E-09 6.1E-14 89.4 11.0 109 93-202 2-127 (188)
69 PRK14526 adenylate kinase; Pro 99.0 4.6E-09 1E-13 89.8 11.8 107 95-207 2-124 (211)
70 PF00406 ADK: Adenylate kinase 99.0 1.9E-09 4.2E-14 86.1 8.9 101 98-202 1-119 (151)
71 PRK14529 adenylate kinase; Pro 99.0 3.6E-09 7.8E-14 91.4 10.8 105 95-206 2-127 (223)
72 COG0645 Predicted kinase [Gene 99.0 5.9E-10 1.3E-14 92.5 5.4 103 94-202 2-120 (170)
73 TIGR02322 phosphon_PhnN phosph 99.0 1E-09 2.2E-14 89.7 6.8 112 94-207 2-133 (179)
74 PRK08233 hypothetical protein; 99.0 3.9E-09 8.5E-14 85.7 9.6 111 92-206 2-119 (182)
75 PLN02165 adenylate isopentenyl 98.9 3.8E-09 8.1E-14 96.2 9.1 113 89-202 39-191 (334)
76 TIGR00017 cmk cytidylate kinas 98.9 2.4E-08 5.3E-13 85.6 12.5 38 93-130 2-39 (217)
77 COG0563 Adk Adenylate kinase a 98.9 7.2E-09 1.6E-13 86.5 8.9 39 94-132 1-39 (178)
78 PRK00081 coaE dephospho-CoA ki 98.9 8.3E-09 1.8E-13 86.5 9.3 39 93-132 2-40 (194)
79 PRK08356 hypothetical protein; 98.9 2E-08 4.4E-13 83.9 11.3 35 93-128 5-39 (195)
80 PRK14733 coaE dephospho-CoA ki 98.9 2E-08 4.3E-13 85.7 10.9 43 91-133 4-46 (204)
81 PRK14730 coaE dephospho-CoA ki 98.9 1.6E-08 3.4E-13 85.2 9.4 39 94-132 2-40 (195)
82 PRK05506 bifunctional sulfate 98.8 1.6E-08 3.6E-13 98.7 10.5 111 91-207 458-579 (632)
83 TIGR00152 dephospho-CoA kinase 98.8 3.6E-08 7.8E-13 81.7 10.9 38 95-132 1-38 (188)
84 KOG0635 Adenosine 5'-phosphosu 98.8 1.8E-08 4E-13 83.1 8.5 109 92-208 30-151 (207)
85 COG4088 Predicted nucleotide k 98.8 3.7E-08 7.9E-13 84.9 10.5 102 94-202 2-118 (261)
86 cd02022 DPCK Dephospho-coenzym 98.8 2.1E-08 4.6E-13 82.8 8.8 37 95-132 1-37 (179)
87 PRK00023 cmk cytidylate kinase 98.8 6.3E-08 1.4E-12 83.3 11.9 39 92-130 3-41 (225)
88 PRK14734 coaE dephospho-CoA ki 98.8 3.1E-08 6.7E-13 83.8 9.6 38 94-132 2-39 (200)
89 PRK03333 coaE dephospho-CoA ki 98.8 7.4E-09 1.6E-13 96.1 6.2 38 94-132 2-39 (395)
90 cd01672 TMPK Thymidine monopho 98.8 5.6E-08 1.2E-12 79.3 10.7 31 94-124 1-34 (200)
91 KOG3079 Uridylate kinase/adeny 98.8 4.4E-08 9.5E-13 82.5 10.1 113 92-208 7-136 (195)
92 PF13238 AAA_18: AAA domain; P 98.8 1.4E-08 2.9E-13 77.3 6.2 22 96-117 1-22 (129)
93 PTZ00322 6-phosphofructo-2-kin 98.7 1.3E-09 2.9E-14 107.0 -0.4 88 92-180 214-303 (664)
94 PRK12339 2-phosphoglycerate ki 98.7 1E-07 2.2E-12 80.7 11.0 40 92-131 2-42 (197)
95 PRK13477 bifunctional pantoate 98.7 1.2E-07 2.7E-12 90.8 12.4 40 92-131 283-322 (512)
96 cd02024 NRK1 Nicotinamide ribo 98.7 5.3E-08 1.2E-12 82.0 8.5 37 95-131 1-38 (187)
97 TIGR01663 PNK-3'Pase polynucle 98.7 8.8E-08 1.9E-12 92.1 10.4 95 91-207 367-470 (526)
98 PLN02422 dephospho-CoA kinase 98.7 1.2E-07 2.7E-12 82.4 10.3 38 94-132 2-39 (232)
99 PLN02842 nucleotide kinase 98.7 9.6E-08 2.1E-12 91.3 9.9 106 97-206 1-122 (505)
100 KOG3877 NADH:ubiquinone oxidor 98.7 3E-08 6.5E-13 88.6 5.3 42 92-133 70-114 (393)
101 KOG0733 Nuclear AAA ATPase (VC 98.6 7.6E-08 1.6E-12 93.3 8.1 143 56-202 186-368 (802)
102 PRK05480 uridine/cytidine kina 98.6 2.2E-07 4.8E-12 78.0 9.9 39 92-130 5-46 (209)
103 COG0283 Cmk Cytidylate kinase 98.6 3E-08 6.4E-13 85.4 4.5 38 94-131 5-42 (222)
104 cd02023 UMPK Uridine monophosp 98.6 2.6E-07 5.6E-12 76.9 9.2 36 95-130 1-39 (198)
105 COG0572 Udk Uridine kinase [Nu 98.6 2.2E-07 4.7E-12 80.2 8.8 38 94-131 9-49 (218)
106 PF08433 KTI12: Chromatin asso 98.6 1.7E-07 3.8E-12 83.0 8.5 105 94-206 2-120 (270)
107 PRK06696 uridine kinase; Valid 98.6 3.9E-07 8.4E-12 77.8 10.4 38 92-129 21-63 (223)
108 KOG0730 AAA+-type ATPase [Post 98.6 7E-08 1.5E-12 93.8 6.4 75 57-133 431-510 (693)
109 PRK14731 coaE dephospho-CoA ki 98.6 1E-06 2.3E-11 74.7 12.2 39 93-132 5-43 (208)
110 KOG0737 AAA+-type ATPase [Post 98.5 2.4E-08 5.1E-13 91.7 1.6 93 39-133 67-169 (386)
111 PRK11860 bifunctional 3-phosph 98.5 5.1E-08 1.1E-12 95.9 3.9 39 93-131 442-480 (661)
112 PTZ00451 dephospho-CoA kinase; 98.5 4.1E-07 9E-12 79.6 9.1 39 94-132 2-40 (244)
113 PF07931 CPT: Chloramphenicol 98.5 6.2E-07 1.3E-11 74.9 9.7 112 93-206 1-131 (174)
114 PTZ00301 uridine kinase; Provi 98.5 2.4E-07 5.2E-12 79.3 7.1 38 93-130 3-47 (210)
115 PF00485 PRK: Phosphoribulokin 98.5 4.6E-08 1E-12 81.6 2.4 35 95-129 1-44 (194)
116 PRK09270 nucleoside triphospha 98.5 4.9E-07 1.1E-11 77.4 8.5 105 91-202 31-177 (229)
117 TIGR00041 DTMP_kinase thymidyl 98.5 2E-06 4.3E-11 71.0 11.6 28 92-119 2-29 (195)
118 TIGR00390 hslU ATP-dependent p 98.5 2.8E-07 6.2E-12 86.5 6.8 63 87-150 41-106 (441)
119 COG4639 Predicted kinase [Gene 98.5 1.1E-06 2.3E-11 72.6 9.2 106 93-204 2-115 (168)
120 COG1428 Deoxynucleoside kinase 98.5 1.7E-06 3.8E-11 74.3 10.5 30 93-122 4-33 (216)
121 cd01673 dNK Deoxyribonucleosid 98.4 1.7E-06 3.7E-11 71.4 10.1 29 96-124 2-30 (193)
122 PRK00698 tmk thymidylate kinas 98.4 1.9E-06 4E-11 71.3 10.2 26 92-117 2-27 (205)
123 PF01121 CoaE: Dephospho-CoA k 98.4 8.5E-07 1.8E-11 74.2 8.1 38 95-133 2-39 (180)
124 COG1222 RPT1 ATP-dependent 26S 98.4 5.9E-08 1.3E-12 89.0 1.2 75 57-133 148-227 (406)
125 TIGR00235 udk uridine kinase. 98.4 1.7E-06 3.8E-11 72.8 9.6 38 92-129 5-45 (207)
126 PRK09518 bifunctional cytidyla 98.4 2.1E-06 4.6E-11 85.1 11.6 37 95-131 3-39 (712)
127 PRK13973 thymidylate kinase; P 98.4 4.6E-06 9.9E-11 70.8 12.0 33 92-124 2-37 (213)
128 PRK14732 coaE dephospho-CoA ki 98.4 4.1E-06 8.8E-11 70.8 11.4 36 96-132 2-37 (196)
129 COG2019 AdkA Archaeal adenylat 98.4 7.7E-06 1.7E-10 68.4 12.1 110 93-202 4-126 (189)
130 PRK12338 hypothetical protein; 98.4 4.8E-06 1E-10 75.7 11.8 42 92-133 3-45 (319)
131 PRK07667 uridine kinase; Provi 98.3 3.6E-06 7.9E-11 70.4 9.9 39 92-130 16-59 (193)
132 PF06414 Zeta_toxin: Zeta toxi 98.3 4.6E-06 9.9E-11 69.9 10.4 108 89-202 11-137 (199)
133 PLN02348 phosphoribulokinase 98.3 9.8E-07 2.1E-11 82.1 6.3 38 92-129 48-105 (395)
134 KOG0739 AAA+-type ATPase [Post 98.3 2.8E-06 6.2E-11 77.0 8.7 93 36-133 112-208 (439)
135 PHA00729 NTP-binding motif con 98.3 4.2E-06 9.1E-11 72.7 9.5 124 79-213 4-147 (226)
136 COG0237 CoaE Dephospho-CoA kin 98.3 1.1E-06 2.4E-11 74.8 5.8 38 93-131 2-39 (201)
137 cd02028 UMPK_like Uridine mono 98.3 1.5E-06 3.2E-11 72.1 6.4 35 95-129 1-40 (179)
138 KOG0733 Nuclear AAA ATPase (VC 98.3 9.2E-07 2E-11 85.9 5.6 75 57-133 508-587 (802)
139 PTZ00454 26S protease regulato 98.3 4.6E-07 1E-11 84.4 2.7 70 54-125 139-211 (398)
140 cd02030 NDUO42 NADH:Ubiquinone 98.3 2E-05 4.4E-10 67.2 12.6 30 95-124 1-30 (219)
141 PF00004 AAA: ATPase family as 98.3 9.8E-07 2.1E-11 67.2 3.9 31 96-126 1-31 (132)
142 PRK05439 pantothenate kinase; 98.2 4.1E-06 9E-11 75.8 8.4 38 92-129 85-129 (311)
143 PF13189 Cytidylate_kin2: Cyti 98.2 3.6E-06 7.8E-11 69.8 7.0 100 95-202 1-130 (179)
144 cd02025 PanK Pantothenate kina 98.2 5.1E-06 1.1E-10 71.3 7.8 34 96-129 2-42 (220)
145 PRK05201 hslU ATP-dependent pr 98.2 3.8E-06 8.2E-11 79.0 7.3 38 90-127 47-84 (443)
146 PRK15453 phosphoribulokinase; 98.2 3.9E-06 8.5E-11 75.2 7.0 38 92-129 4-46 (290)
147 PRK03992 proteasome-activating 98.2 8.5E-07 1.8E-11 82.1 2.7 68 56-125 127-197 (389)
148 TIGR00554 panK_bact pantothena 98.2 4.6E-06 1E-10 74.8 7.1 38 92-129 61-105 (290)
149 PRK05416 glmZ(sRNA)-inactivati 98.2 1.7E-05 3.6E-10 71.1 10.6 32 92-124 5-36 (288)
150 PRK00300 gmk guanylate kinase; 98.2 4.6E-06 9.9E-11 69.4 6.4 27 92-118 4-30 (205)
151 PTZ00361 26 proteosome regulat 98.1 1.3E-06 2.8E-11 82.4 2.7 66 57-124 180-248 (438)
152 PRK07429 phosphoribulokinase; 98.1 5.8E-06 1.3E-10 75.2 6.4 37 92-128 7-46 (327)
153 PRK14737 gmk guanylate kinase; 98.1 9.5E-06 2.1E-10 68.0 7.2 26 92-117 3-28 (186)
154 PRK12337 2-phosphoglycerate ki 98.1 3.5E-05 7.7E-10 73.2 10.9 42 91-132 253-295 (475)
155 cd02026 PRK Phosphoribulokinas 98.0 8.2E-06 1.8E-10 72.3 6.2 33 96-128 2-37 (273)
156 TIGR03263 guanyl_kin guanylate 98.0 5.2E-06 1.1E-10 67.6 4.5 29 93-121 1-29 (180)
157 PRK04220 2-phosphoglycerate ki 98.0 6.8E-05 1.5E-09 67.7 12.0 39 92-130 91-130 (301)
158 PRK00091 miaA tRNA delta(2)-is 98.0 2E-05 4.3E-10 71.2 8.6 36 92-127 3-38 (307)
159 TIGR01242 26Sp45 26S proteasom 98.0 2.4E-06 5.2E-11 78.0 2.6 67 57-125 119-188 (364)
160 COG3709 Uncharacterized compon 98.0 2.4E-05 5.1E-10 65.3 8.0 116 92-209 4-139 (192)
161 PLN02924 thymidylate kinase 98.0 5.3E-05 1.2E-09 65.2 10.3 30 91-120 14-43 (220)
162 PRK14738 gmk guanylate kinase; 98.0 1E-05 2.2E-10 68.4 5.7 27 90-116 10-36 (206)
163 TIGR03689 pup_AAA proteasome A 98.0 4.6E-06 9.9E-11 80.1 3.8 62 57-120 179-243 (512)
164 smart00072 GuKc Guanylate kina 98.0 3.8E-05 8.2E-10 63.6 8.2 25 93-117 2-26 (184)
165 KOG0736 Peroxisome assembly fa 98.0 8.8E-06 1.9E-10 80.8 4.9 73 51-125 663-737 (953)
166 cd02019 NK Nucleoside/nucleoti 97.9 8.5E-06 1.8E-10 57.5 3.5 23 95-117 1-23 (69)
167 TIGR01243 CDC48 AAA family ATP 97.9 5E-06 1.1E-10 82.6 3.0 67 57-125 450-519 (733)
168 TIGR00150 HI0065_YjeE ATPase, 97.9 2.2E-05 4.8E-10 62.9 6.0 46 80-125 8-55 (133)
169 PRK12269 bifunctional cytidyla 97.9 6.9E-06 1.5E-10 83.2 3.7 49 83-131 22-72 (863)
170 PRK13974 thymidylate kinase; P 97.9 0.00013 2.7E-09 61.9 10.9 27 92-118 2-28 (212)
171 KOG3078 Adenylate kinase [Nucl 97.9 3.5E-05 7.5E-10 67.3 7.5 113 92-209 14-142 (235)
172 PF01591 6PF2K: 6-phosphofruct 97.9 1.8E-05 3.9E-10 68.5 5.3 56 92-147 11-71 (222)
173 cd02029 PRK_like Phosphoribulo 97.9 3.5E-05 7.7E-10 68.7 7.2 35 95-129 1-40 (277)
174 smart00382 AAA ATPases associa 97.9 1.6E-05 3.4E-10 59.2 4.1 28 93-120 2-29 (148)
175 PLN02840 tRNA dimethylallyltra 97.9 3.8E-05 8.1E-10 72.2 7.4 37 91-127 19-55 (421)
176 KOG0727 26S proteasome regulat 97.8 8.7E-06 1.9E-10 72.5 2.4 75 57-133 152-231 (408)
177 TIGR01243 CDC48 AAA family ATP 97.8 8.8E-06 1.9E-10 80.9 2.8 67 57-125 175-244 (733)
178 COG2074 2-phosphoglycerate kin 97.8 0.00018 3.9E-09 63.8 10.5 48 84-131 80-128 (299)
179 COG0464 SpoVK ATPases of the A 97.8 1.3E-05 2.9E-10 75.8 3.1 71 54-126 236-309 (494)
180 PF07728 AAA_5: AAA domain (dy 97.8 2.6E-05 5.5E-10 61.0 4.0 28 95-122 1-28 (139)
181 TIGR01650 PD_CobS cobaltochela 97.8 3.7E-05 8.1E-10 70.1 5.5 53 70-122 39-93 (327)
182 CHL00195 ycf46 Ycf46; Provisio 97.8 1.9E-05 4E-10 75.6 3.4 35 92-126 258-292 (489)
183 PRK08084 DNA replication initi 97.8 0.00054 1.2E-08 59.1 12.2 66 57-126 13-83 (235)
184 KOG0726 26S proteasome regulat 97.7 5.9E-06 1.3E-10 74.8 -0.3 74 58-133 183-261 (440)
185 PF03668 ATP_bind_2: P-loop AT 97.7 0.00028 6E-09 63.3 10.2 33 94-129 2-34 (284)
186 TIGR02640 gas_vesic_GvpN gas v 97.7 6.3E-05 1.4E-09 65.9 5.9 33 91-123 19-51 (262)
187 PRK06893 DNA replication initi 97.7 0.00055 1.2E-08 58.8 11.5 57 67-125 15-76 (229)
188 PLN02318 phosphoribulokinase/u 97.7 0.00013 2.9E-09 71.4 8.2 55 74-128 44-101 (656)
189 PLN02748 tRNA dimethylallyltra 97.7 0.00011 2.4E-09 70.0 7.4 36 91-126 20-55 (468)
190 KOG1384 tRNA delta(2)-isopente 97.7 0.00027 5.8E-09 64.5 9.4 110 92-202 6-154 (348)
191 PRK13976 thymidylate kinase; P 97.7 0.00039 8.4E-09 59.3 9.9 24 95-118 2-25 (209)
192 PF02367 UPF0079: Uncharacteri 97.7 6E-05 1.3E-09 59.7 4.6 39 82-120 3-42 (123)
193 TIGR01241 FtsH_fam ATP-depende 97.7 2.4E-05 5.2E-10 74.4 2.7 69 54-125 49-120 (495)
194 cd00009 AAA The AAA+ (ATPases 97.7 6.3E-05 1.4E-09 56.7 4.5 34 92-125 18-54 (151)
195 KOG4238 Bifunctional ATP sulfu 97.7 8.9E-05 1.9E-09 68.8 6.2 107 91-207 48-171 (627)
196 TIGR00174 miaA tRNA isopenteny 97.6 8.2E-05 1.8E-09 66.7 5.6 32 95-126 1-32 (287)
197 PF13521 AAA_28: AAA domain; P 97.6 5E-05 1.1E-09 61.2 3.4 27 95-122 1-27 (163)
198 PRK07933 thymidylate kinase; V 97.6 0.00051 1.1E-08 58.6 9.8 25 94-118 1-25 (213)
199 PF05496 RuvB_N: Holliday junc 97.6 5.7E-05 1.2E-09 65.8 3.9 33 92-124 49-81 (233)
200 PF13173 AAA_14: AAA domain 97.6 8.4E-05 1.8E-09 57.9 4.5 39 92-130 1-43 (128)
201 PRK06761 hypothetical protein; 97.6 4.7E-05 1E-09 68.1 3.4 34 93-126 3-36 (282)
202 KOG0738 AAA+-type ATPase [Post 97.6 3.9E-05 8.4E-10 71.6 2.9 66 57-124 209-276 (491)
203 PRK05342 clpX ATP-dependent pr 97.6 7.2E-05 1.6E-09 70.1 4.5 36 91-126 106-141 (412)
204 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.00014 3.1E-09 61.0 5.5 60 67-128 14-78 (226)
205 COG0466 Lon ATP-dependent Lon 97.5 8.8E-05 1.9E-09 73.4 4.5 39 86-124 343-381 (782)
206 COG1072 CoaA Panthothenate kin 97.5 0.00019 4.1E-09 64.1 6.1 107 92-202 81-227 (283)
207 COG2256 MGS1 ATPase related to 97.5 0.00048 1E-08 64.5 8.9 37 92-128 47-83 (436)
208 COG0125 Tmk Thymidylate kinase 97.5 0.00074 1.6E-08 57.9 9.4 29 92-120 2-30 (208)
209 TIGR02881 spore_V_K stage V sp 97.5 9.9E-05 2.1E-09 64.4 3.9 26 92-117 41-66 (261)
210 PF03215 Rad17: Rad17 cell cyc 97.5 0.00014 3.1E-09 70.0 5.3 45 79-123 23-75 (519)
211 PRK10646 ADP-binding protein; 97.5 0.00023 4.9E-09 58.4 5.5 41 80-120 14-55 (153)
212 PHA02244 ATPase-like protein 97.4 0.00026 5.5E-09 65.8 6.2 43 85-127 110-153 (383)
213 TIGR00382 clpX endopeptidase C 97.4 0.00014 3.1E-09 68.3 4.5 34 92-125 115-148 (413)
214 PRK09087 hypothetical protein; 97.4 0.00028 6E-09 60.9 5.7 38 92-129 43-80 (226)
215 PRK06620 hypothetical protein; 97.4 0.00089 1.9E-08 57.2 8.6 32 94-125 45-76 (214)
216 KOG3308 Uncharacterized protei 97.4 0.0012 2.7E-08 56.8 9.3 37 95-131 6-43 (225)
217 PF02223 Thymidylate_kin: Thym 97.4 0.00047 1E-08 56.6 6.5 23 98-120 1-23 (186)
218 KOG0744 AAA+-type ATPase [Post 97.4 0.00011 2.5E-09 67.2 3.0 29 92-120 176-204 (423)
219 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00022 4.8E-09 65.9 4.9 28 92-119 77-104 (361)
220 COG1220 HslU ATP-dependent pro 97.4 0.00054 1.2E-08 63.2 7.2 43 83-125 40-82 (444)
221 KOG0652 26S proteasome regulat 97.4 5.4E-05 1.2E-09 67.8 0.7 65 58-124 169-236 (424)
222 CHL00176 ftsH cell division pr 97.4 0.00013 2.8E-09 71.9 3.4 34 92-125 215-248 (638)
223 PRK05800 cobU adenosylcobinami 97.4 0.00022 4.8E-09 59.0 4.3 32 94-125 2-35 (170)
224 TIGR02880 cbbX_cfxQ probable R 97.3 0.00025 5.4E-09 63.1 4.6 25 93-117 58-82 (284)
225 CHL00181 cbbX CbbX; Provisiona 97.3 0.00022 4.8E-09 63.6 4.1 26 92-117 58-83 (287)
226 KOG0731 AAA+-type ATPase conta 97.3 0.00012 2.5E-09 73.2 2.3 76 52-130 303-383 (774)
227 COG0194 Gmk Guanylate kinase [ 97.3 0.00057 1.2E-08 57.9 6.1 29 92-120 3-31 (191)
228 PHA03132 thymidine kinase; Pro 97.3 0.0022 4.8E-08 62.6 10.6 31 92-122 256-286 (580)
229 PRK04195 replication factor C 97.3 0.00029 6.4E-09 66.9 4.4 33 93-125 39-71 (482)
230 TIGR00635 ruvB Holliday juncti 97.2 0.00035 7.7E-09 61.6 4.5 30 92-121 29-58 (305)
231 PF07724 AAA_2: AAA domain (Cd 97.2 0.00035 7.5E-09 57.9 4.1 26 94-119 4-29 (171)
232 COG1660 Predicted P-loop-conta 97.2 0.0012 2.7E-08 58.7 7.7 99 94-213 2-112 (286)
233 PRK11784 tRNA 2-selenouridine 97.2 0.002 4.2E-08 59.3 9.4 105 92-202 140-252 (345)
234 PRK08903 DnaA regulatory inact 97.2 0.00085 1.8E-08 56.9 6.6 38 92-129 41-83 (227)
235 COG1618 Predicted nucleotide k 97.2 0.0003 6.4E-09 58.7 3.6 26 92-117 4-29 (179)
236 PRK00080 ruvB Holliday junctio 97.2 0.00034 7.4E-09 62.9 4.3 32 91-122 49-80 (328)
237 PLN00020 ribulose bisphosphate 97.2 0.00034 7.3E-09 65.3 4.2 42 92-133 147-190 (413)
238 KOG2004 Mitochondrial ATP-depe 97.2 0.00028 6.1E-09 70.1 3.9 38 87-124 432-469 (906)
239 PRK13342 recombination factor 97.2 0.00048 1E-08 64.1 5.2 35 92-126 35-69 (413)
240 COG1223 Predicted ATPase (AAA+ 97.2 0.0018 3.9E-08 58.2 8.2 46 80-125 129-183 (368)
241 PRK14729 miaA tRNA delta(2)-is 97.2 0.0014 3.1E-08 59.2 7.7 34 93-127 4-37 (300)
242 PF00625 Guanylate_kin: Guanyl 97.2 0.00047 1E-08 56.8 4.3 27 92-118 1-27 (183)
243 KOG3220 Similar to bacterial d 97.2 0.0041 9E-08 53.6 9.9 37 95-132 3-39 (225)
244 PF05729 NACHT: NACHT domain 97.2 0.00041 8.9E-09 54.4 3.6 25 94-118 1-25 (166)
245 KOG1969 DNA replication checkp 97.1 0.00034 7.4E-09 69.5 3.7 35 91-125 324-358 (877)
246 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00048 1E-08 53.3 3.7 36 92-129 14-49 (107)
247 PRK08099 bifunctional DNA-bind 97.1 0.00059 1.3E-08 63.8 4.9 32 92-123 218-249 (399)
248 TIGR00763 lon ATP-dependent pr 97.1 0.00061 1.3E-08 68.5 5.4 35 90-124 344-378 (775)
249 COG0802 Predicted ATPase or ki 97.1 0.00085 1.8E-08 54.9 5.2 38 82-119 13-51 (149)
250 TIGR01526 nadR_NMN_Atrans nico 97.1 0.00052 1.1E-08 62.3 4.4 39 85-124 155-193 (325)
251 KOG0729 26S proteasome regulat 97.1 0.00023 5E-09 64.0 1.9 91 32-124 138-242 (435)
252 PF00910 RNA_helicase: RNA hel 97.1 0.00038 8.3E-09 52.9 2.8 23 96-118 1-23 (107)
253 KOG1970 Checkpoint RAD17-RFC c 97.1 0.0006 1.3E-08 66.0 4.7 52 72-123 78-140 (634)
254 cd00071 GMPK Guanosine monopho 97.1 0.00042 9E-09 55.1 3.1 23 96-118 2-24 (137)
255 COG0324 MiaA tRNA delta(2)-iso 97.1 0.00063 1.4E-08 61.7 4.5 36 92-127 2-37 (308)
256 KOG0740 AAA+-type ATPase [Post 97.1 0.00027 5.8E-09 66.6 2.1 67 57-125 150-218 (428)
257 PF01745 IPT: Isopentenyl tran 97.1 0.00059 1.3E-08 59.2 4.0 34 94-127 2-35 (233)
258 COG0714 MoxR-like ATPases [Gen 97.1 0.00059 1.3E-08 61.5 4.2 35 89-123 39-73 (329)
259 PF03266 NTPase_1: NTPase; In 97.1 0.00058 1.3E-08 56.4 3.8 23 95-117 1-23 (168)
260 PF08303 tRNA_lig_kinase: tRNA 97.1 0.00046 1E-08 57.4 3.1 32 96-127 2-34 (168)
261 PHA02575 1 deoxynucleoside mon 97.1 0.00081 1.8E-08 58.5 4.7 36 94-130 1-37 (227)
262 PF13401 AAA_22: AAA domain; P 97.0 0.00059 1.3E-08 52.1 3.3 25 93-117 4-28 (131)
263 PRK00771 signal recognition pa 97.0 0.0039 8.5E-08 59.0 9.3 38 92-129 94-136 (437)
264 KOG2702 Predicted panthothenat 97.0 0.0032 6.9E-08 55.6 8.0 61 52-118 84-144 (323)
265 PRK05642 DNA replication initi 97.0 0.01 2.2E-07 51.2 11.1 37 93-129 45-86 (234)
266 KOG0734 AAA+-type ATPase conta 97.0 0.0015 3.3E-08 63.3 6.4 39 93-131 337-376 (752)
267 cd03115 SRP The signal recogni 97.0 0.00086 1.9E-08 54.4 4.1 33 95-127 2-39 (173)
268 PF07726 AAA_3: ATPase family 97.0 0.00053 1.1E-08 54.9 2.7 39 95-133 1-43 (131)
269 KOG3062 RNA polymerase II elon 97.0 0.0033 7.2E-08 55.2 7.8 104 94-203 2-119 (281)
270 PF06068 TIP49: TIP49 C-termin 97.0 0.0008 1.7E-08 62.6 4.2 34 91-124 48-83 (398)
271 COG1219 ClpX ATP-dependent pro 97.0 0.00088 1.9E-08 61.4 4.2 43 91-133 95-137 (408)
272 PRK12377 putative replication 96.9 0.0019 4.1E-08 56.7 6.2 51 80-130 86-143 (248)
273 PF13245 AAA_19: Part of AAA d 96.9 0.00096 2.1E-08 48.2 3.5 25 93-117 10-35 (76)
274 cd01918 HprK_C HprK/P, the bif 96.9 0.00095 2.1E-08 54.5 3.6 36 91-127 12-47 (149)
275 PRK14086 dnaA chromosomal repl 96.9 0.0091 2E-07 58.8 10.9 64 67-131 287-359 (617)
276 PLN03025 replication factor C 96.9 0.0016 3.5E-08 58.4 5.2 31 87-117 28-58 (319)
277 PF13191 AAA_16: AAA ATPase do 96.9 0.00089 1.9E-08 53.8 3.2 28 91-118 22-49 (185)
278 CHL00206 ycf2 Ycf2; Provisiona 96.8 0.00094 2E-08 72.3 4.0 37 92-128 1629-1667(2281)
279 TIGR00959 ffh signal recogniti 96.8 0.0052 1.1E-07 58.1 8.4 37 93-129 99-141 (428)
280 PF00005 ABC_tran: ABC transpo 96.8 0.001 2.2E-08 51.4 3.1 26 92-117 10-35 (137)
281 PRK12402 replication factor C 96.8 0.002 4.4E-08 57.1 5.3 25 94-118 37-61 (337)
282 PF10662 PduV-EutP: Ethanolami 96.8 0.0011 2.3E-08 54.0 3.1 23 93-115 1-23 (143)
283 KOG0651 26S proteasome regulat 96.8 0.00046 1E-08 62.9 1.1 75 57-133 129-208 (388)
284 PF01695 IstB_IS21: IstB-like 96.8 0.0016 3.4E-08 54.2 4.3 41 92-132 46-91 (178)
285 PRK10733 hflB ATP-dependent me 96.8 0.0018 3.9E-08 63.9 5.3 33 93-125 185-217 (644)
286 PF00448 SRP54: SRP54-type pro 96.8 0.0012 2.7E-08 55.7 3.6 38 93-130 1-43 (196)
287 TIGR03015 pepcterm_ATPase puta 96.8 0.0013 2.8E-08 56.6 3.8 26 93-118 43-68 (269)
288 PF00308 Bac_DnaA: Bacterial d 96.8 0.018 3.8E-07 49.3 10.7 63 67-130 7-78 (219)
289 PLN02796 D-glycerate 3-kinase 96.8 0.0014 3.1E-08 60.3 4.2 38 92-129 99-141 (347)
290 TIGR02237 recomb_radB DNA repa 96.8 0.0016 3.6E-08 54.2 4.2 36 91-126 10-50 (209)
291 PRK09183 transposase/IS protei 96.8 0.0017 3.8E-08 57.0 4.5 37 92-128 101-142 (259)
292 PHA02544 44 clamp loader, smal 96.8 0.0015 3.2E-08 58.0 4.0 31 93-123 43-73 (316)
293 PRK11034 clpA ATP-dependent Cl 96.8 0.0014 3.1E-08 65.9 4.3 32 94-125 489-520 (758)
294 PLN02772 guanylate kinase 96.8 0.0055 1.2E-07 57.4 7.9 26 92-117 134-159 (398)
295 cd01120 RecA-like_NTPases RecA 96.8 0.0012 2.6E-08 51.2 3.1 34 96-129 2-40 (165)
296 PRK07952 DNA replication prote 96.7 0.009 2E-07 52.4 8.8 48 83-130 87-141 (244)
297 cd01394 radB RadB. The archaea 96.7 0.0017 3.7E-08 54.6 4.1 36 91-126 17-57 (218)
298 TIGR01618 phage_P_loop phage n 96.7 0.0012 2.5E-08 57.2 3.1 35 93-129 12-46 (220)
299 TIGR00073 hypB hydrogenase acc 96.7 0.0022 4.7E-08 54.0 4.5 37 82-118 11-47 (207)
300 PF03029 ATP_bind_1: Conserved 96.7 0.0015 3.2E-08 56.9 3.5 30 98-127 1-35 (238)
301 COG4619 ABC-type uncharacteriz 96.7 0.0014 3.1E-08 55.4 3.2 26 92-117 28-53 (223)
302 TIGR02782 TrbB_P P-type conjug 96.7 0.0034 7.5E-08 56.4 5.9 26 92-117 131-156 (299)
303 COG1124 DppF ABC-type dipeptid 96.7 0.0015 3.2E-08 57.5 3.4 26 92-117 32-57 (252)
304 PRK13695 putative NTPase; Prov 96.7 0.0018 3.9E-08 52.8 3.7 24 94-117 1-24 (174)
305 cd03269 ABC_putative_ATPase Th 96.7 0.0016 3.5E-08 54.4 3.4 26 92-117 25-50 (210)
306 cd03292 ABC_FtsE_transporter F 96.7 0.0016 3.5E-08 54.4 3.5 26 92-117 26-51 (214)
307 TIGR00960 3a0501s02 Type II (G 96.7 0.0016 3.4E-08 54.7 3.4 26 92-117 28-53 (216)
308 TIGR03499 FlhF flagellar biosy 96.7 0.002 4.4E-08 57.2 4.2 37 92-128 193-236 (282)
309 PRK11331 5-methylcytosine-spec 96.7 0.0019 4.1E-08 61.5 4.2 34 86-119 186-220 (459)
310 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.7 0.0017 3.6E-08 54.5 3.4 26 92-117 29-54 (218)
311 TIGR01166 cbiO cobalt transpor 96.7 0.0017 3.7E-08 53.5 3.4 26 92-117 17-42 (190)
312 PRK15455 PrkA family serine pr 96.7 0.0014 3.1E-08 64.2 3.4 27 92-118 102-128 (644)
313 COG1126 GlnQ ABC-type polar am 96.7 0.0016 3.4E-08 56.7 3.3 33 92-124 27-63 (240)
314 TIGR02673 FtsE cell division A 96.6 0.0017 3.7E-08 54.4 3.4 26 92-117 27-52 (214)
315 cd01130 VirB11-like_ATPase Typ 96.6 0.0019 4.2E-08 53.5 3.7 27 92-118 24-50 (186)
316 PRK10787 DNA-binding ATP-depen 96.6 0.002 4.4E-08 65.0 4.5 33 91-123 347-379 (784)
317 PRK13341 recombination factor 96.6 0.0024 5.3E-08 63.9 5.0 36 92-127 51-86 (725)
318 cd03261 ABC_Org_Solvent_Resist 96.6 0.0017 3.8E-08 55.2 3.4 26 92-117 25-50 (235)
319 cd03225 ABC_cobalt_CbiO_domain 96.6 0.0018 3.8E-08 54.1 3.4 26 92-117 26-51 (211)
320 cd03262 ABC_HisP_GlnQ_permease 96.6 0.0019 4E-08 54.0 3.5 26 92-117 25-50 (213)
321 PRK08181 transposase; Validate 96.6 0.0026 5.7E-08 56.5 4.5 40 92-131 105-149 (269)
322 cd03259 ABC_Carb_Solutes_like 96.6 0.0019 4.1E-08 54.1 3.4 26 92-117 25-50 (213)
323 cd03256 ABC_PhnC_transporter A 96.6 0.0019 4E-08 55.0 3.4 26 92-117 26-51 (241)
324 PRK14962 DNA polymerase III su 96.6 0.0033 7.1E-08 60.1 5.4 27 93-119 36-62 (472)
325 cd03224 ABC_TM1139_LivF_branch 96.6 0.0018 3.9E-08 54.4 3.2 26 92-117 25-50 (222)
326 cd03219 ABC_Mj1267_LivG_branch 96.6 0.0018 3.8E-08 55.1 3.2 26 92-117 25-50 (236)
327 PRK14961 DNA polymerase III su 96.6 0.0036 7.7E-08 57.4 5.4 27 93-119 38-64 (363)
328 cd03235 ABC_Metallic_Cations A 96.6 0.0018 3.9E-08 54.3 3.2 26 92-117 24-49 (213)
329 cd03260 ABC_PstB_phosphate_tra 96.6 0.002 4.4E-08 54.4 3.5 26 92-117 25-50 (227)
330 cd03293 ABC_NrtD_SsuB_transpor 96.6 0.002 4.3E-08 54.3 3.4 26 92-117 29-54 (220)
331 PF03193 DUF258: Protein of un 96.6 0.0023 5E-08 52.9 3.7 32 85-116 27-58 (161)
332 TIGR02315 ABC_phnC phosphonate 96.6 0.002 4.3E-08 55.0 3.4 26 92-117 27-52 (243)
333 cd01131 PilT Pilus retraction 96.6 0.0021 4.6E-08 54.0 3.5 24 95-118 3-26 (198)
334 PRK14956 DNA polymerase III su 96.6 0.0034 7.3E-08 60.2 5.2 28 93-120 40-67 (484)
335 KOG0735 AAA+-type ATPase [Post 96.6 0.0011 2.4E-08 66.0 2.0 75 57-133 664-743 (952)
336 TIGR01425 SRP54_euk signal rec 96.6 0.0023 5.1E-08 60.4 4.1 36 93-128 100-140 (429)
337 PF01078 Mg_chelatase: Magnesi 96.6 0.0023 5E-08 54.9 3.7 34 83-117 13-46 (206)
338 PF13086 AAA_11: AAA domain; P 96.6 0.0041 8.9E-08 51.2 5.1 35 83-117 6-41 (236)
339 cd03226 ABC_cobalt_CbiO_domain 96.6 0.0021 4.6E-08 53.6 3.4 26 92-117 25-50 (205)
340 PRK06526 transposase; Provisio 96.6 0.0022 4.8E-08 56.3 3.7 40 92-131 97-141 (254)
341 cd03301 ABC_MalK_N The N-termi 96.6 0.0022 4.7E-08 53.7 3.5 26 92-117 25-50 (213)
342 KOG0743 AAA+-type ATPase [Post 96.6 0.0018 3.8E-08 61.3 3.2 32 94-125 236-267 (457)
343 cd03258 ABC_MetN_methionine_tr 96.5 0.0021 4.6E-08 54.5 3.5 26 92-117 30-55 (233)
344 TIGR03608 L_ocin_972_ABC putat 96.5 0.0022 4.8E-08 53.2 3.4 26 92-117 23-48 (206)
345 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.0037 8.1E-08 44.2 4.2 31 96-126 2-35 (99)
346 TIGR02211 LolD_lipo_ex lipopro 96.5 0.0022 4.8E-08 53.9 3.4 26 92-117 30-55 (221)
347 cd03230 ABC_DR_subfamily_A Thi 96.5 0.0023 5E-08 52.2 3.4 26 92-117 25-50 (173)
348 cd03263 ABC_subfamily_A The AB 96.5 0.0023 4.9E-08 53.8 3.4 26 92-117 27-52 (220)
349 PF08477 Miro: Miro-like prote 96.5 0.0026 5.6E-08 47.7 3.4 23 95-117 1-23 (119)
350 PRK06645 DNA polymerase III su 96.5 0.0039 8.4E-08 60.1 5.4 28 93-120 43-70 (507)
351 PRK12724 flagellar biosynthesi 96.5 0.0022 4.8E-08 60.6 3.7 38 92-129 222-265 (432)
352 COG2255 RuvB Holliday junction 96.5 0.0039 8.4E-08 56.4 4.9 47 74-121 34-80 (332)
353 cd03265 ABC_DrrA DrrA is the A 96.5 0.0024 5.2E-08 53.8 3.5 26 92-117 25-50 (220)
354 TIGR02639 ClpA ATP-dependent C 96.5 0.0039 8.4E-08 62.3 5.5 34 92-125 202-245 (731)
355 PF03205 MobB: Molybdopterin g 96.5 0.0028 6.1E-08 50.8 3.6 24 94-117 1-24 (140)
356 PRK13541 cytochrome c biogenes 96.5 0.0025 5.4E-08 52.9 3.4 26 92-117 25-50 (195)
357 TIGR03864 PQQ_ABC_ATP ABC tran 96.5 0.0025 5.4E-08 54.4 3.5 26 92-117 26-51 (236)
358 cd03229 ABC_Class3 This class 96.5 0.0026 5.7E-08 52.1 3.5 26 92-117 25-50 (178)
359 PRK11629 lolD lipoprotein tran 96.5 0.0025 5.4E-08 54.3 3.5 26 92-117 34-59 (233)
360 cd03296 ABC_CysA_sulfate_impor 96.5 0.0025 5.4E-08 54.5 3.4 26 92-117 27-52 (239)
361 TIGR01978 sufC FeS assembly AT 96.5 0.0024 5.3E-08 54.3 3.4 25 92-116 25-49 (243)
362 TIGR03410 urea_trans_UrtE urea 96.5 0.0024 5.3E-08 54.1 3.3 26 92-117 25-50 (230)
363 cd03218 ABC_YhbG The ABC trans 96.5 0.0025 5.5E-08 53.9 3.4 26 92-117 25-50 (232)
364 PRK11124 artP arginine transpo 96.5 0.0026 5.6E-08 54.4 3.5 26 92-117 27-52 (242)
365 PRK10751 molybdopterin-guanine 96.5 0.0029 6.3E-08 52.8 3.6 27 92-118 5-31 (173)
366 TIGR00750 lao LAO/AO transport 96.5 0.004 8.7E-08 55.6 4.8 34 92-125 33-71 (300)
367 PRK10584 putative ABC transpor 96.5 0.0027 5.8E-08 53.8 3.5 26 92-117 35-60 (228)
368 cd03232 ABC_PDR_domain2 The pl 96.5 0.0026 5.6E-08 52.8 3.3 24 92-115 32-55 (192)
369 PRK10416 signal recognition pa 96.5 0.0028 6E-08 57.6 3.8 36 92-127 113-153 (318)
370 PRK11264 putative amino-acid A 96.4 0.0027 5.9E-08 54.4 3.5 26 92-117 28-53 (250)
371 KOG0732 AAA+-type ATPase conta 96.4 0.0015 3.3E-08 67.2 2.2 65 52-118 257-324 (1080)
372 PRK14250 phosphate ABC transpo 96.4 0.0028 6E-08 54.4 3.4 26 92-117 28-53 (241)
373 cd03257 ABC_NikE_OppD_transpor 96.4 0.0027 6E-08 53.4 3.4 26 92-117 30-55 (228)
374 cd04155 Arl3 Arl3 subfamily. 96.4 0.0034 7.4E-08 49.9 3.8 28 89-116 10-37 (173)
375 cd00544 CobU Adenosylcobinamid 96.4 0.0033 7.2E-08 52.0 3.7 29 96-124 2-32 (169)
376 PRK10867 signal recognition pa 96.4 0.0029 6.4E-08 59.8 3.9 38 93-130 100-143 (433)
377 cd03264 ABC_drug_resistance_li 96.4 0.0025 5.5E-08 53.3 3.1 25 92-117 25-49 (211)
378 cd03266 ABC_NatA_sodium_export 96.4 0.0029 6.2E-08 53.1 3.4 26 92-117 30-55 (218)
379 PRK00149 dnaA chromosomal repl 96.4 0.04 8.7E-07 51.8 11.5 63 67-130 121-192 (450)
380 cd03268 ABC_BcrA_bacitracin_re 96.4 0.0029 6.4E-08 52.8 3.4 26 92-117 25-50 (208)
381 PRK13768 GTPase; Provisional 96.4 0.0038 8.3E-08 54.6 4.3 35 93-127 2-41 (253)
382 PLN03046 D-glycerate 3-kinase; 96.4 0.0034 7.3E-08 59.5 4.1 38 92-129 211-253 (460)
383 cd03247 ABCC_cytochrome_bd The 96.4 0.0031 6.6E-08 51.6 3.5 26 92-117 27-52 (178)
384 PRK14247 phosphate ABC transpo 96.4 0.0029 6.2E-08 54.4 3.4 26 92-117 28-53 (250)
385 PRK10247 putative ABC transpor 96.4 0.003 6.4E-08 53.7 3.5 26 92-117 32-57 (225)
386 PRK11248 tauB taurine transpor 96.4 0.0029 6.2E-08 55.1 3.4 26 92-117 26-51 (255)
387 TIGR00064 ftsY signal recognit 96.4 0.0031 6.8E-08 55.9 3.7 36 92-127 71-111 (272)
388 cd03234 ABCG_White The White s 96.4 0.0028 6.1E-08 53.7 3.3 27 92-118 32-58 (226)
389 TIGR03167 tRNA_sel_U_synt tRNA 96.4 0.016 3.5E-07 52.5 8.4 105 92-202 126-239 (311)
390 PRK14242 phosphate transporter 96.4 0.003 6.4E-08 54.4 3.5 26 92-117 31-56 (253)
391 KOG0728 26S proteasome regulat 96.4 0.0012 2.6E-08 59.1 1.0 67 67-133 152-223 (404)
392 COG1120 FepC ABC-type cobalami 96.4 0.003 6.6E-08 56.0 3.6 37 92-128 27-67 (258)
393 cd03222 ABC_RNaseL_inhibitor T 96.4 0.003 6.5E-08 52.6 3.3 26 92-117 24-49 (177)
394 PRK15177 Vi polysaccharide exp 96.4 0.003 6.5E-08 53.5 3.4 26 92-117 12-37 (213)
395 cd03223 ABCD_peroxisomal_ALDP 96.4 0.0032 7E-08 51.2 3.4 26 92-117 26-51 (166)
396 PHA03136 thymidine kinase; Pro 96.4 0.023 5E-07 52.9 9.4 27 93-119 36-62 (378)
397 PRK09493 glnQ glutamine ABC tr 96.4 0.003 6.6E-08 53.9 3.4 26 92-117 26-51 (240)
398 TIGR02639 ClpA ATP-dependent C 96.4 0.0032 6.9E-08 62.9 4.0 31 95-125 486-516 (731)
399 COG1419 FlhF Flagellar GTP-bin 96.4 0.019 4E-07 54.0 8.8 41 91-131 201-248 (407)
400 PRK10744 pstB phosphate transp 96.4 0.0031 6.7E-08 54.7 3.4 26 92-117 38-63 (260)
401 PRK10895 lipopolysaccharide AB 96.4 0.0031 6.8E-08 53.9 3.4 26 92-117 28-53 (241)
402 PRK10908 cell division protein 96.4 0.0032 6.9E-08 53.1 3.5 26 92-117 27-52 (222)
403 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.004 8.7E-08 52.6 4.1 36 91-126 17-63 (235)
404 PRK00411 cdc6 cell division co 96.4 0.0066 1.4E-07 55.3 5.8 27 91-117 53-79 (394)
405 COG1855 ATPase (PilT family) [ 96.4 0.0027 5.8E-08 60.6 3.2 26 92-117 262-287 (604)
406 TIGR02928 orc1/cdc6 family rep 96.4 0.0047 1E-07 55.7 4.7 26 92-117 39-64 (365)
407 TIGR03771 anch_rpt_ABC anchore 96.4 0.0032 7E-08 53.4 3.4 26 92-117 5-30 (223)
408 PRK13540 cytochrome c biogenes 96.4 0.0034 7.4E-08 52.3 3.5 26 92-117 26-51 (200)
409 cd03215 ABC_Carb_Monos_II This 96.4 0.0033 7.2E-08 51.7 3.3 26 92-117 25-50 (182)
410 cd03295 ABC_OpuCA_Osmoprotecti 96.3 0.0034 7.3E-08 53.8 3.5 26 92-117 26-51 (242)
411 TIGR01184 ntrCD nitrate transp 96.3 0.0033 7.2E-08 53.6 3.5 26 92-117 10-35 (230)
412 TIGR01189 ccmA heme ABC export 96.3 0.0034 7.5E-08 52.1 3.4 26 92-117 25-50 (198)
413 PRK14274 phosphate ABC transpo 96.3 0.0034 7.3E-08 54.4 3.5 26 92-117 37-62 (259)
414 TIGR02770 nickel_nikD nickel i 96.3 0.0033 7.1E-08 53.5 3.4 27 92-118 11-37 (230)
415 PRK11300 livG leucine/isoleuci 96.3 0.0031 6.7E-08 54.3 3.2 26 92-117 30-55 (255)
416 COG1116 TauB ABC-type nitrate/ 96.3 0.0034 7.3E-08 55.3 3.4 26 92-117 28-53 (248)
417 TIGR03005 ectoine_ehuA ectoine 96.3 0.0033 7.2E-08 54.1 3.4 26 92-117 25-50 (252)
418 cd03228 ABCC_MRP_Like The MRP 96.3 0.0037 8E-08 50.9 3.5 26 92-117 27-52 (171)
419 cd03254 ABCC_Glucan_exporter_l 96.3 0.0035 7.5E-08 53.0 3.4 26 92-117 28-53 (229)
420 cd03251 ABCC_MsbA MsbA is an e 96.3 0.0035 7.6E-08 53.1 3.5 26 92-117 27-52 (234)
421 PRK14974 cell division protein 96.3 0.0042 9.1E-08 56.9 4.1 37 92-128 139-180 (336)
422 PRK11889 flhF flagellar biosyn 96.3 0.0036 7.8E-08 59.0 3.8 37 92-128 240-281 (436)
423 cd03246 ABCC_Protease_Secretio 96.3 0.0038 8.2E-08 50.9 3.5 26 92-117 27-52 (173)
424 PRK04296 thymidine kinase; Pro 96.3 0.0038 8.2E-08 52.1 3.5 25 93-117 2-26 (190)
425 cd03214 ABC_Iron-Siderophores_ 96.3 0.0038 8.2E-08 51.2 3.5 26 92-117 24-49 (180)
426 PRK10771 thiQ thiamine transpo 96.3 0.0035 7.5E-08 53.3 3.4 26 92-117 24-49 (232)
427 PRK14262 phosphate ABC transpo 96.3 0.0036 7.8E-08 53.8 3.4 26 92-117 28-53 (250)
428 PRK14267 phosphate ABC transpo 96.3 0.0036 7.7E-08 53.9 3.4 26 92-117 29-54 (253)
429 PRK14490 putative bifunctional 96.3 0.0037 8.1E-08 57.5 3.7 29 91-119 3-31 (369)
430 PRK14256 phosphate ABC transpo 96.3 0.0037 7.9E-08 53.9 3.5 26 92-117 29-54 (252)
431 cd03245 ABCC_bacteriocin_expor 96.3 0.0038 8.2E-08 52.5 3.5 26 92-117 29-54 (220)
432 cd03216 ABC_Carb_Monos_I This 96.3 0.0039 8.6E-08 50.5 3.5 26 92-117 25-50 (163)
433 cd03233 ABC_PDR_domain1 The pl 96.3 0.0032 7E-08 52.7 3.0 27 92-118 32-58 (202)
434 TIGR02323 CP_lyasePhnK phospho 96.3 0.0036 7.8E-08 53.9 3.4 26 92-117 28-53 (253)
435 PRK11701 phnK phosphonate C-P 96.3 0.0036 7.9E-08 54.1 3.4 26 92-117 31-56 (258)
436 cd03298 ABC_ThiQ_thiamine_tran 96.3 0.0038 8.3E-08 52.2 3.4 26 92-117 23-48 (211)
437 PRK14241 phosphate transporter 96.3 0.0037 8E-08 54.1 3.4 26 92-117 29-54 (258)
438 TIGR00972 3a0107s01c2 phosphat 96.3 0.0037 8.1E-08 53.6 3.4 26 92-117 26-51 (247)
439 COG3896 Chloramphenicol 3-O-ph 96.3 0.035 7.6E-07 46.6 9.0 42 88-129 18-61 (205)
440 PRK13543 cytochrome c biogenes 96.3 0.0038 8.2E-08 52.6 3.4 26 92-117 36-61 (214)
441 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.3 0.0038 8.2E-08 53.2 3.4 26 92-117 28-53 (238)
442 PRK13539 cytochrome c biogenes 96.3 0.0039 8.4E-08 52.3 3.5 26 92-117 27-52 (207)
443 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.3 0.0037 8.1E-08 53.2 3.4 26 92-117 47-72 (224)
444 PF00931 NB-ARC: NB-ARC domain 96.3 0.0035 7.7E-08 54.2 3.3 26 91-116 17-42 (287)
445 TIGR01277 thiQ thiamine ABC tr 96.3 0.0039 8.5E-08 52.4 3.4 26 92-117 23-48 (213)
446 cd03252 ABCC_Hemolysin The ABC 96.3 0.0039 8.5E-08 53.0 3.4 26 92-117 27-52 (237)
447 PRK14255 phosphate ABC transpo 96.3 0.0039 8.4E-08 53.6 3.4 25 92-116 30-54 (252)
448 cd03250 ABCC_MRP_domain1 Domai 96.3 0.0041 8.8E-08 51.8 3.4 26 92-117 30-55 (204)
449 COG3839 MalK ABC-type sugar tr 96.3 0.0037 7.9E-08 57.4 3.4 26 92-117 28-53 (338)
450 PRK14248 phosphate ABC transpo 96.3 0.0039 8.5E-08 54.3 3.5 25 92-116 46-70 (268)
451 PRK14244 phosphate ABC transpo 96.3 0.0041 8.8E-08 53.6 3.5 26 92-117 30-55 (251)
452 PRK11247 ssuB aliphatic sulfon 96.2 0.004 8.6E-08 54.5 3.5 26 92-117 37-62 (257)
453 COG1224 TIP49 DNA helicase TIP 96.2 0.0045 9.7E-08 57.6 3.9 33 91-123 63-97 (450)
454 PRK12723 flagellar biosynthesi 96.2 0.0045 9.9E-08 57.8 4.0 38 92-129 173-219 (388)
455 PHA02624 large T antigen; Prov 96.2 0.0055 1.2E-07 60.3 4.7 41 84-124 421-462 (647)
456 TIGR00101 ureG urease accessor 96.2 0.0045 9.8E-08 52.3 3.7 26 93-118 1-26 (199)
457 PRK14960 DNA polymerase III su 96.2 0.0068 1.5E-07 60.3 5.4 28 93-120 37-64 (702)
458 PRK14964 DNA polymerase III su 96.2 0.0069 1.5E-07 58.2 5.3 28 93-120 35-62 (491)
459 cd03248 ABCC_TAP TAP, the Tran 96.2 0.0042 9.1E-08 52.5 3.5 26 92-117 39-64 (226)
460 PRK14251 phosphate ABC transpo 96.2 0.0041 8.9E-08 53.4 3.5 26 92-117 29-54 (251)
461 PRK10575 iron-hydroxamate tran 96.2 0.0037 8E-08 54.5 3.2 26 92-117 36-61 (265)
462 cd03237 ABC_RNaseL_inhibitor_d 96.2 0.0041 8.8E-08 54.1 3.4 26 92-117 24-49 (246)
463 PRK11831 putative ABC transpor 96.2 0.004 8.6E-08 54.4 3.4 26 92-117 32-57 (269)
464 TIGR02324 CP_lyasePhnL phospho 96.2 0.0043 9.3E-08 52.3 3.4 26 92-117 33-58 (224)
465 PRK14239 phosphate transporter 96.2 0.0042 9E-08 53.4 3.4 25 92-116 30-54 (252)
466 PRK14261 phosphate ABC transpo 96.2 0.0042 9E-08 53.5 3.4 25 92-116 31-55 (253)
467 KOG0745 Putative ATP-dependent 96.2 0.0047 1E-07 58.7 3.9 38 91-128 224-261 (564)
468 cd03244 ABCC_MRP_domain2 Domai 96.2 0.0045 9.7E-08 52.0 3.5 26 92-117 29-54 (221)
469 cd02034 CooC The accessory pro 96.2 0.0066 1.4E-07 47.2 4.2 31 96-126 2-37 (116)
470 PRK14253 phosphate ABC transpo 96.2 0.0044 9.5E-08 53.2 3.5 26 92-117 28-53 (249)
471 CHL00095 clpC Clp protease ATP 96.2 0.0066 1.4E-07 61.5 5.3 26 92-117 199-224 (821)
472 PRK13538 cytochrome c biogenes 96.2 0.0044 9.6E-08 51.8 3.4 26 92-117 26-51 (204)
473 cd03253 ABCC_ATM1_transporter 96.2 0.0045 9.6E-08 52.6 3.4 26 92-117 26-51 (236)
474 PF13479 AAA_24: AAA domain 96.2 0.0038 8.2E-08 53.0 3.0 33 92-127 2-34 (213)
475 PRK14955 DNA polymerase III su 96.2 0.0077 1.7E-07 55.9 5.3 27 94-120 39-65 (397)
476 PRK10619 histidine/lysine/argi 96.2 0.0044 9.6E-08 53.6 3.4 26 92-117 30-55 (257)
477 cd03238 ABC_UvrA The excision 96.2 0.006 1.3E-07 50.8 4.1 29 92-120 20-48 (176)
478 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.0045 9.8E-08 49.3 3.2 26 92-117 25-50 (144)
479 cd01124 KaiC KaiC is a circadi 96.2 0.0044 9.4E-08 50.2 3.2 32 95-126 1-37 (187)
480 PRK10463 hydrogenase nickel in 96.2 0.0058 1.3E-07 55.0 4.3 40 86-125 97-140 (290)
481 PRK10865 protein disaggregatio 96.2 0.007 1.5E-07 61.7 5.3 26 92-117 198-223 (857)
482 PRK14957 DNA polymerase III su 96.2 0.0078 1.7E-07 58.6 5.4 26 94-119 39-64 (546)
483 PRK13638 cbiO cobalt transport 96.2 0.0042 9E-08 54.3 3.2 26 92-117 26-51 (271)
484 cd03267 ABC_NatA_like Similar 96.2 0.0046 9.9E-08 53.0 3.4 26 92-117 46-71 (236)
485 PRK14259 phosphate ABC transpo 96.2 0.0044 9.6E-08 54.2 3.4 26 92-117 38-63 (269)
486 PRK13648 cbiO cobalt transport 96.2 0.0045 9.9E-08 54.0 3.4 26 92-117 34-59 (269)
487 PRK14269 phosphate ABC transpo 96.2 0.0047 1E-07 53.1 3.5 26 92-117 27-52 (246)
488 CHL00131 ycf16 sulfate ABC tra 96.2 0.0042 9E-08 53.4 3.1 25 92-116 32-56 (252)
489 PRK14245 phosphate ABC transpo 96.2 0.0047 1E-07 53.1 3.4 25 92-116 28-52 (250)
490 cd03369 ABCC_NFT1 Domain 2 of 96.2 0.0049 1.1E-07 51.4 3.5 26 92-117 33-58 (207)
491 KOG0991 Replication factor C, 96.2 0.0067 1.5E-07 53.8 4.4 35 83-117 38-72 (333)
492 PRK00440 rfc replication facto 96.2 0.009 2E-07 52.5 5.3 25 93-117 38-62 (319)
493 cd03283 ABC_MutS-like MutS-lik 96.2 0.0048 1E-07 52.0 3.4 24 92-115 24-47 (199)
494 cd03290 ABCC_SUR1_N The SUR do 96.2 0.0049 1.1E-07 51.9 3.5 26 92-117 26-51 (218)
495 cd03294 ABC_Pro_Gly_Bertaine T 96.2 0.0047 1E-07 54.1 3.5 26 92-117 49-74 (269)
496 PRK14088 dnaA chromosomal repl 96.2 0.014 2.9E-07 55.2 6.8 64 67-131 104-175 (440)
497 PRK13645 cbiO cobalt transport 96.2 0.0046 1E-07 54.6 3.4 26 92-117 36-61 (289)
498 PF06309 Torsin: Torsin; Inte 96.2 0.0092 2E-07 47.6 4.7 26 92-117 52-77 (127)
499 PRK15056 manganese/iron transp 96.2 0.0047 1E-07 54.1 3.4 26 92-117 32-57 (272)
500 COG1341 Predicted GTPase or GT 96.1 0.0056 1.2E-07 57.2 4.0 35 92-126 72-111 (398)
No 1
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.96 E-value=3.7e-29 Score=207.47 Aligned_cols=117 Identities=33% Similarity=0.509 Sum_probs=109.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~ 172 (215)
.+.|+|+|+|||||||+|+.||++|+++|+|+|.++++..| ++++++|+.+||.+||+.|.+++.++....+.||++||
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g-~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGG 80 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG-MSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGG 80 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC-cCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCC
Confidence 46799999999999999999999999999999999999999 99999999999999999999999999988789999999
Q ss_pred ceeechHHHHhhc-CCcEEEEECCHHHHHhh-h-cCCCCCC
Q 028019 173 GAVQSSANLALLR-HGISLWIDVPPGMVARM-D-HSGFPES 210 (215)
Q Consensus 173 g~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR-~-~rg~~~~ 210 (215)
|+|+++++|++|+ .+++|||++|++++++| . .+..|..
T Consensus 81 G~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll 121 (172)
T COG0703 81 GAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLL 121 (172)
T ss_pred ccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcc
Confidence 9999999999998 78999999999999999 3 4445543
No 2
>PLN02199 shikimate kinase
Probab=99.96 E-value=3.6e-28 Score=216.67 Aligned_cols=148 Identities=34% Similarity=0.535 Sum_probs=133.3
Q ss_pred CceeeecccCCCCcccc--ccccCCCchhhHHHHHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHH
Q 028019 52 PRITTRSIADDTTSNTV--TKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF 129 (215)
Q Consensus 52 ~~~~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~ 129 (215)
+.++.|| .+.+.+.++ .+. +.||. .||+++++|.+.+++++|+|+|++||||||+|+.||+.+|++|+|+|.+++
T Consensus 62 ~~~~~~~-~~~~~~~le~~~~~-~~de~-~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe 138 (303)
T PLN02199 62 SPAVSCS-DNNSSALLETGSVY-PFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIE 138 (303)
T ss_pred ccccccC-CCCchhhcccCCCC-CCCHH-HHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHH
Confidence 5677788 555544344 444 88998 599999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCCceeechHHHHhhcCCcEEEEECCHHHHHhh
Q 028019 130 EAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM 202 (215)
Q Consensus 130 ~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~g~Vl~~~~r~~L~~g~vV~Ld~p~e~l~eR 202 (215)
+...+.++.++|+.+|+..|++.|.++|.++....++||+||||++.++.||++|+.+++|||++|++++.+|
T Consensus 139 ~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~R 211 (303)
T PLN02199 139 QAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHR 211 (303)
T ss_pred HHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHH
Confidence 9742389999999999999999999999999877789999999999999999999889999999999999999
No 3
>PRK13948 shikimate kinase; Provisional
Probab=99.92 E-value=1.6e-24 Score=181.29 Aligned_cols=113 Identities=25% Similarity=0.333 Sum_probs=106.2
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEE
Q 028019 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (215)
Q Consensus 90 ~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa 169 (215)
+.++..|+|+|+|||||||+|+.||++||++|+|+|.++++..| ++++++|+.+|+..||+.|.+++..+....+.||+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g-~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa 85 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG-KSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVIS 85 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 45779999999999999999999999999999999999999998 89999999999999999999999999877789999
Q ss_pred eCCceeechHHHHhhc-CCcEEEEECCHHHHHhhh
Q 028019 170 AGNGAVQSSANLALLR-HGISLWIDVPPGMVARMD 203 (215)
Q Consensus 170 ~G~g~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR~ 203 (215)
+|+|++.+++|++.|+ .+.+|||++|++++.+|-
T Consensus 86 ~GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl 120 (182)
T PRK13948 86 LGGGTFMHEENRRKLLSRGPVVVLWASPETIYERT 120 (182)
T ss_pred CCCcEEcCHHHHHHHHcCCeEEEEECCHHHHHHHh
Confidence 9999999999999886 789999999999999993
No 4
>PRK00625 shikimate kinase; Provisional
Probab=99.91 E-value=2e-23 Score=173.23 Aligned_cols=114 Identities=26% Similarity=0.457 Sum_probs=103.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCC----chHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEE
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE----SAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~----si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa 169 (215)
+.|+|+|+|||||||+|+.||+++|++++|+|+++++..| . +++++|+.+|+..|++.|.+++..+.. .+.||+
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g-~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~~~VIs 78 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYH-GALYSSPKEIYQAYGEEGFCREEFLALTSLPV-IPSIVA 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhC-CCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-CCeEEE
Confidence 3699999999999999999999999999999999999887 5 899999999999999999999988865 567999
Q ss_pred eCCceeechHHHHhhc-CCcEEEEECCHHHHHhh-hcCCCCC
Q 028019 170 AGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPE 209 (215)
Q Consensus 170 ~G~g~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR-~~rg~~~ 209 (215)
+|||.+.++++++.|+ .+.+|||++|++++.+| ..|+.++
T Consensus 79 ~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~ 120 (173)
T PRK00625 79 LGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPE 120 (173)
T ss_pred CCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCc
Confidence 9999999999999886 67999999999999999 6777654
No 5
>PRK13949 shikimate kinase; Provisional
Probab=99.90 E-value=8.4e-23 Score=168.33 Aligned_cols=108 Identities=27% Similarity=0.438 Sum_probs=101.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCCc
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~g 173 (215)
++|+|+|+|||||||+|+.||+.++++++|+|.++++..+ .++.++|+..|+..|++.|..++.++....++||++|+|
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~-~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg 80 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH-KTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGG 80 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC-ccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 5799999999999999999999999999999999998888 889999999999999999999999987677899999999
Q ss_pred eeechHHHHhhc-CCcEEEEECCHHHHHhh
Q 028019 174 AVQSSANLALLR-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 174 ~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR 202 (215)
++.++.++++|+ .+++|||++|++++.+|
T Consensus 81 ~~~~~~~~~~l~~~~~vi~L~~~~~~~~~R 110 (169)
T PRK13949 81 APCFFDNMELMNASGTTVYLKVSPEVLFVR 110 (169)
T ss_pred ccCCHHHHHHHHhCCeEEEEECCHHHHHHH
Confidence 999999999887 78999999999999999
No 6
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.89 E-value=1.2e-22 Score=194.46 Aligned_cols=110 Identities=23% Similarity=0.328 Sum_probs=103.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G 171 (215)
+.+.|+|+|+|||||||+|+.||++||++|+|+|.++++..| ++++++|+++||..||+.|.+++.+++...+.||+||
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g-~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~G 83 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIG-MSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLG 83 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHC-cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECC
Confidence 457899999999999999999999999999999999999998 9999999999999999999999999886667899999
Q ss_pred CceeechHHHHhh----c-CCcEEEEECCHHHHHhh
Q 028019 172 NGAVQSSANLALL----R-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 172 ~g~Vl~~~~r~~L----~-~g~vV~Ld~p~e~l~eR 202 (215)
||++.+++|+++| + .+++|||++|++++.+|
T Consensus 84 GG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~R 119 (542)
T PRK14021 84 GGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMER 119 (542)
T ss_pred CchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHH
Confidence 9999999999865 3 57999999999999999
No 7
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.89 E-value=5.8e-23 Score=166.73 Aligned_cols=100 Identities=29% Similarity=0.479 Sum_probs=93.9
Q ss_pred CCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCCceeechHHH
Q 028019 102 NNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANL 181 (215)
Q Consensus 102 pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~g~Vl~~~~r 181 (215)
|||||||+|+.||+.||++|+|+|.++++.+| +++.++|..+|++.||+.|.+++.++....++||+||||++.+++++
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g-~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~~ 79 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG-MSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEENR 79 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC-CcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHHH
Confidence 79999999999999999999999999999999 99999999999999999999999999987799999999999999999
Q ss_pred Hhhc-CCcEEEEECCHHHHHhh
Q 028019 182 ALLR-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 182 ~~L~-~g~vV~Ld~p~e~l~eR 202 (215)
++|+ .+.+|||+++++++.+|
T Consensus 80 ~~L~~~g~vI~L~~~~~~l~~R 101 (158)
T PF01202_consen 80 ELLKENGLVIYLDADPEELAER 101 (158)
T ss_dssp HHHHHHSEEEEEE--HHHHHHH
T ss_pred HHHHhCCEEEEEeCCHHHHHHH
Confidence 9998 88999999999999999
No 8
>PRK13946 shikimate kinase; Provisional
Probab=99.88 E-value=4.7e-22 Score=165.10 Aligned_cols=117 Identities=27% Similarity=0.415 Sum_probs=106.3
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEE
Q 028019 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (215)
Q Consensus 89 ~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VL 168 (215)
+.+.++.|+|+|++||||||+|+.||++||++|+|+|.++++..| .++.++++.+|+.+|++.|.+++..+.....+||
T Consensus 6 ~~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g-~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi 84 (184)
T PRK13946 6 AALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAAR-MTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVL 84 (184)
T ss_pred hccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 456788999999999999999999999999999999999988887 8888899999999999999999999987778999
Q ss_pred EeCCceeechHHHHhhc-CCcEEEEECCHHHHHhh-hcCC
Q 028019 169 CAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 169 a~G~g~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
++|+|.++.+.++++|+ .+++|||++|++++.+| ..|+
T Consensus 85 ~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~ 124 (184)
T PRK13946 85 ATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRD 124 (184)
T ss_pred ECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCC
Confidence 99999999999999886 78999999999999999 4443
No 9
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.88 E-value=6e-22 Score=163.41 Aligned_cols=117 Identities=23% Similarity=0.402 Sum_probs=105.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G 171 (215)
.+++|+|+|++||||||+|+.||+.+|++++|+|..++...| .++.++++..|+..|+..|.+++..+.....+|+++|
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g-~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~g 81 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATG 81 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC-cCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 467899999999999999999999999999999999998887 7888999999999999999999999887778899999
Q ss_pred CceeechHHHHhhc-CCcEEEEECCHHHHHhh-hcCCCCC
Q 028019 172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPE 209 (215)
Q Consensus 172 ~g~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR-~~rg~~~ 209 (215)
+|++.++.++++|+ .+.+|||++|.+++.+| ..++..|
T Consensus 82 gg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP 121 (172)
T PRK05057 82 GGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRP 121 (172)
T ss_pred CchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCC
Confidence 99999999999886 78999999999999999 3333343
No 10
>PRK13947 shikimate kinase; Provisional
Probab=99.88 E-value=8.4e-22 Score=159.86 Aligned_cols=114 Identities=25% Similarity=0.465 Sum_probs=102.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCCc
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~g 173 (215)
++|+|+|+|||||||+|+.||++||++|+|.|.++++..| .++.++|+..|+.+|++.|.++++.+....+.||++|+|
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g-~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g 80 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTG-MTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGG 80 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcC-CcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCC
Confidence 4699999999999999999999999999999999998887 888889999999999999999999998777889999999
Q ss_pred eeechHHHHhhc-CCcEEEEECCHHHHHhh-hcCCCC
Q 028019 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFP 208 (215)
Q Consensus 174 ~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR-~~rg~~ 208 (215)
+++++.++..|+ .+++|||++|++++.+| ..|+..
T Consensus 81 ~vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r~~r 117 (171)
T PRK13947 81 VVLNPENVVQLRKNGVVICLKARPEVILRRVGKKKSR 117 (171)
T ss_pred CcCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCC
Confidence 999988888876 67899999999999999 444433
No 11
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.85 E-value=1.9e-20 Score=150.69 Aligned_cols=111 Identities=36% Similarity=0.584 Sum_probs=101.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEe
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~ 170 (215)
++++.|+|+|+|||||||+|+.||+++|++++|.|.++++..| .++.++++..|+..|++.+.+++..+....+.||++
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~ 80 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG-KSIPEIFEEEGEAAFRELEEEVLAELLARHNLVIST 80 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 5788999999999999999999999999999999999998888 788888888899999999999999988766678999
Q ss_pred CCceeechHHHHhhc-CCcEEEEECCHHHHHhh
Q 028019 171 GNGAVQSSANLALLR-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 171 G~g~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR 202 (215)
|+++++++.++++|+ .+++|||++|.+.+.+|
T Consensus 81 g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R 113 (175)
T PRK00131 81 GGGAVLREENRALLRERGTVVYLDASFEELLRR 113 (175)
T ss_pred CCCEeecHHHHHHHHhCCEEEEEECCHHHHHHH
Confidence 999999988999885 67999999999999999
No 12
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.85 E-value=1.5e-20 Score=152.90 Aligned_cols=107 Identities=25% Similarity=0.462 Sum_probs=98.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCCc
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~g 173 (215)
+.|+|+|++||||||+|+.||+++|++++|.|.+++...| +.+.++++..|+..|++.|.+++..+. ....||++|+|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g-~~~~~~~~~~g~~~~~~~e~~~~~~~~-~~~~vi~~ggg 80 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN-MTVAEIVEREGWAGFRARESAALEAVT-APSTVIATGGG 80 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHhc-CCCeEEECCCC
Confidence 5799999999999999999999999999999999999887 888888989999999999999886654 46789999999
Q ss_pred eeechHHHHhhc-CCcEEEEECCHHHHHhh
Q 028019 174 AVQSSANLALLR-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 174 ~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR 202 (215)
+++++.++++++ .+++|||++|++++.+|
T Consensus 81 ~vl~~~~~~~l~~~~~~v~l~~~~~~~~~R 110 (171)
T PRK03731 81 IILTEENRHFMRNNGIVIYLCAPVSVLANR 110 (171)
T ss_pred ccCCHHHHHHHHhCCEEEEEECCHHHHHHH
Confidence 999999999887 78999999999999999
No 13
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.83 E-value=7.2e-20 Score=145.25 Aligned_cols=111 Identities=35% Similarity=0.549 Sum_probs=98.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCCce
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~g~ 174 (215)
.|+|+|+|||||||+|+.||+.+|+++++.|.++++..| .++.+++...|+..|+..+.+++..+....+.||++|+++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~ 79 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAG-MSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGA 79 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcC-CCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCc
Confidence 489999999999999999999999999999999998887 6788888888999999999988888887778999999899
Q ss_pred eechHHHHhhc-CCcEEEEECCHHHHHhh-hcCC
Q 028019 175 VQSSANLALLR-HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 175 Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
+.+..+++.+. .+++|||++|.+++.+| ..|+
T Consensus 80 i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 80 VLREENRRLLLENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred cCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCC
Confidence 98887766554 78999999999999999 4453
No 14
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.83 E-value=4.6e-20 Score=174.78 Aligned_cols=113 Identities=28% Similarity=0.495 Sum_probs=104.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCCce
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~g~ 174 (215)
+|+|+|+|||||||+|+.||+++|++++|+|.++++..| +++.++|+.+|+.+|++.|.++++++....+.||++|+|+
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g-~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gggv 80 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREG-RSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGV 80 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcC-CCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCcc
Confidence 699999999999999999999999999999999999888 8999999999999999999999999987778899999999
Q ss_pred eechHHHHhhcCCcEEEEECCHHHHHhh-hcCCCC
Q 028019 175 VQSSANLALLRHGISLWIDVPPGMVARM-DHSGFP 208 (215)
Q Consensus 175 Vl~~~~r~~L~~g~vV~Ld~p~e~l~eR-~~rg~~ 208 (215)
+++++++++|+.+.+|||++|++++.+| ..++.|
T Consensus 81 v~~~~~r~~l~~~~vI~L~as~e~l~~Rl~~~~RP 115 (488)
T PRK13951 81 VIDPENRELLKKEKTLFLYAPPEVLMERVTTENRP 115 (488)
T ss_pred ccChHHHHHHhcCeEEEEECCHHHHHHHhccCCCC
Confidence 9999999999867799999999999999 445554
No 15
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.78 E-value=2.2e-18 Score=154.37 Aligned_cols=110 Identities=25% Similarity=0.454 Sum_probs=99.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHc-CCCeEEEe
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSS-MGRLVVCA 170 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~-~~~~VLa~ 170 (215)
++.+|+|+|+|||||||+|+.||++||++|+|+|..+++..| .++.+++...|+..|+..|.+++.++.. ....||++
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G-~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~ 210 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG-LSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLAT 210 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEEC
Confidence 778999999999999999999999999999999999999888 8899999889999999999999888765 44689999
Q ss_pred CCceeechHHHHhhc-CCcEEEEECCHHHHHhh
Q 028019 171 GNGAVQSSANLALLR-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 171 G~g~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR 202 (215)
|+|++.++.++.++. .+++|||++|++++.+|
T Consensus 211 Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~R 243 (309)
T PRK08154 211 GGGIVSEPATFDLLLSHCYTVWLKASPEEHMAR 243 (309)
T ss_pred CCchhCCHHHHHHHHhCCEEEEEECCHHHHHHH
Confidence 999988888887664 77899999999999999
No 16
>PRK03839 putative kinase; Provisional
Probab=99.58 E-value=5.6e-15 Score=121.36 Aligned_cols=100 Identities=17% Similarity=0.282 Sum_probs=72.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCCce
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~g~ 174 (215)
.|+|+|+|||||||+|+.||+++|++|+|+|+++++. .+.+.+...++..|+.++..+...+ ....+|++ |.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~vIid-G~-- 73 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK----GIGEEKDDEMEIDFDKLAYFIEEEF-KEKNVVLD-GH-- 73 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc----CCcccCChhhhcCHHHHHHHHHHhc-cCCCEEEE-ec--
Confidence 6999999999999999999999999999999998753 2333454556667787777765533 23344443 31
Q ss_pred eechHHHHhhcCCcEEEEECCHHHHHhh-hcCCC
Q 028019 175 VQSSANLALLRHGISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 175 Vl~~~~r~~L~~g~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
...+...+.+|||+++++++.+| ..|+.
T Consensus 74 -----~~~l~~~~~vi~L~~~~~~~~~Rl~~R~~ 102 (180)
T PRK03839 74 -----LSHLLPVDYVIVLRAHPKIIKERLKERGY 102 (180)
T ss_pred -----cccccCCCEEEEEECCHHHHHHHHHHcCC
Confidence 11122467899999999999999 55654
No 17
>PRK09169 hypothetical protein; Validated
Probab=99.53 E-value=4.2e-14 Score=149.16 Aligned_cols=115 Identities=12% Similarity=-0.017 Sum_probs=106.7
Q ss_pred HHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcC
Q 028019 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSM 163 (215)
Q Consensus 84 ~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~ 163 (215)
..++.+.|....|+|+|++|+||||+++.||+.|++.|+|+|..+++..| ++|.++|..+| .|++.|..++..+..
T Consensus 2101 ~~~~v~rL~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~G-rkI~rIFa~eG--~FRe~Eaa~V~Dllr- 2176 (2316)
T PRK09169 2101 LAELVERLGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIG-KKIARIQALRG--LSPEQAAARVRDALR- 2176 (2316)
T ss_pred hHHHHHHHhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhC-CCHHHHHHhcC--chHHHHHHHHHHHhc-
Confidence 34455678899999999999999999999999999999999999999998 99999999988 899999999998886
Q ss_pred CCeEEEeCCceeechHHHHhhc-CCcEEEEECCHHHHHhh
Q 028019 164 GRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 164 ~~~VLa~G~g~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR 202 (215)
...||++|||++..+++++.|. .|++||++.+.+++.+|
T Consensus 2177 ~~vVLSTGGGav~~~enr~~L~~~GlvV~L~an~~tl~~R 2216 (2316)
T PRK09169 2177 WEVVLPAEGFGAAVEQARQALGAKGLRVMRINNGFAAPDT 2216 (2316)
T ss_pred CCeEEeCCCCcccCHHHHHHHHHCCEEEEEECCHHHHHHH
Confidence 6789999999999999999987 89999999999999999
No 18
>PRK06217 hypothetical protein; Validated
Probab=99.50 E-value=1.1e-13 Score=114.52 Aligned_cols=101 Identities=17% Similarity=0.255 Sum_probs=68.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCCc
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~g 173 (215)
++|+|+|+|||||||+|+.|++.+|++++++|++++...+ .+ +...+... ..+..++..+.....+||+ |
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~-~~----~~~~~~~~--~~~~~~~~~~~~~~~~vi~-G-- 71 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTD-PP----FTTKRPPE--ERLRLLLEDLRPREGWVLS-G-- 71 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCC-CC----ccccCCHH--HHHHHHHHHHhcCCCEEEE-c--
Confidence 5799999999999999999999999999999999886543 21 11111111 2233445555455678886 2
Q ss_pred eeechHHHHhhc-CCcEEEEECCHHHHHhh-hcC
Q 028019 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS 205 (215)
Q Consensus 174 ~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR-~~r 205 (215)
.... .....+. .+.+|||++|.+++.+| ..|
T Consensus 72 ~~~~-~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R 104 (183)
T PRK06217 72 SALG-WGDPLEPLFDLVVFLTIPPELRLERLRLR 104 (183)
T ss_pred cHHH-HHHHHHhhCCEEEEEECCHHHHHHHHHcC
Confidence 2221 1111222 67899999999999999 444
No 19
>PRK14530 adenylate kinase; Provisional
Probab=99.49 E-value=3.9e-13 Score=113.89 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=75.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhh---------hHHHHHHHHHHHHHHH-
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESD---------EKGYQQAETEVLKQLS- 161 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~g---------e~~fr~~e~~vL~~L~- 161 (215)
.+++|+|+|+|||||||+|+.||+++|++++++|+++.+..+ ..+.+.....+ .....+....++....
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~-~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQ-MDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhcc-CCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999999999999999999988654 33322221111 1111223344444443
Q ss_pred cCCCeEEEeCCceeechHHHHhhc----CCcEEEEECCHHHHHhh-hcCCC
Q 028019 162 SMGRLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 162 ~~~~~VLa~G~g~Vl~~~~r~~L~----~g~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
....+||+ |..-+..+.+.|. .+++|||++|.+++.+| .+|..
T Consensus 81 ~~~~~Ild---G~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~ 128 (215)
T PRK14530 81 DADGFVLD---GYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRV 128 (215)
T ss_pred cCCCEEEc---CCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCc
Confidence 34567774 4444444444442 57999999999999999 55543
No 20
>PRK14532 adenylate kinase; Provisional
Probab=99.49 E-value=1.9e-13 Score=112.80 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=70.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh--C---CCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEE
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--G---GESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~--G---~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa 169 (215)
+|+|+|+|||||||+|+.||+++|+.++++|+++.+.. + +..+.++++ .|+..+.+.-..++..... .+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~----~~~ 76 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERLP----EAE 76 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHHh----CcC
Confidence 69999999999999999999999999999999888753 1 022344444 3544444443343433322 134
Q ss_pred eCCceeechH-----HHH----hhc-----CCcEEEEECCHHHHHhh-hcC
Q 028019 170 AGNGAVQSSA-----NLA----LLR-----HGISLWIDVPPGMVARM-DHS 205 (215)
Q Consensus 170 ~G~g~Vl~~~-----~r~----~L~-----~g~vV~Ld~p~e~l~eR-~~r 205 (215)
+++|++++.. ..+ .+. .+++|||++|++++.+| .+|
T Consensus 77 ~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R 127 (188)
T PRK14532 77 AAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKR 127 (188)
T ss_pred ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 5667776531 111 222 24799999999999999 454
No 21
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.44 E-value=9.3e-13 Score=106.25 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=71.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCceeecchhHHH-----H-hCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEE
Q 028019 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE-----A-AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~-----~-~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa 169 (215)
|+|+|++||||||+|+.|++.+++.+++.|++... . .| ... .....+.+++..+..+...+......||.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~ 76 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAG-IPL---NDDDRWPWLQNLNDASTAAAAKNKVGIIT 76 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcC-CCC---ChhhHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 57999999999999999999999999999997432 1 12 221 12234455666655555555444445776
Q ss_pred eCCceeechHHHHhhc-C---CcEEEEECCHHHHHhh-hcCC
Q 028019 170 AGNGAVQSSANLALLR-H---GISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 170 ~G~g~Vl~~~~r~~L~-~---g~vV~Ld~p~e~l~eR-~~rg 206 (215)
++ +.++..++.++ . ..+|||++|.+++.+| ..|+
T Consensus 77 ~t---~~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 115 (163)
T TIGR01313 77 CS---ALKRHYRDILREAEPNLHFIYLSGDKDVILERMKARK 115 (163)
T ss_pred ec---ccHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhcc
Confidence 64 24556666654 2 2579999999999999 4454
No 22
>PRK08118 topology modulation protein; Reviewed
Probab=99.44 E-value=1.1e-12 Score=107.99 Aligned_cols=93 Identities=16% Similarity=0.291 Sum_probs=64.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCCc
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~g 173 (215)
++|+|+|+|||||||+|+.|++.+++++++.|.+++.. |+.... . +....++..+.....+|+....+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~-~w~~~~-------~----~~~~~~~~~~~~~~~wVidG~~~ 69 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP-NWEGVP-------K----EEQITVQNELVKEDEWIIDGNYG 69 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc-CCcCCC-------H----HHHHHHHHHHhcCCCEEEeCCcc
Confidence 57999999999999999999999999999999998753 212111 0 11122345555566788852221
Q ss_pred eeechHHHHhh-cCCcEEEEECCHHHHHhh
Q 028019 174 AVQSSANLALL-RHGISLWIDVPPGMVARM 202 (215)
Q Consensus 174 ~Vl~~~~r~~L-~~g~vV~Ld~p~e~l~eR 202 (215)
... . ..+ ..+.+|||++|.+++..|
T Consensus 70 ~~~---~-~~l~~~d~vi~Ld~p~~~~~~R 95 (167)
T PRK08118 70 GTM---D-IRLNAADTIIFLDIPRTICLYR 95 (167)
T ss_pred hHH---H-HHHHhCCEEEEEeCCHHHHHHH
Confidence 111 1 122 378999999999999887
No 23
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=4.6e-13 Score=110.13 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=83.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhC-C--CchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEE
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G--ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G-~--~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa 169 (215)
+-.|+++|++||||||+|+.|+++||+.|+|.|+++....- . ..++ .-+++.|.|...+.......++.....|++
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~Gip-LnD~DR~pWL~~i~~~~~~~l~~~q~vVlA 90 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIP-LNDDDRWPWLKKIAVELRKALASGQGVVLA 90 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCC-CCcccccHHHHHHHHHHHHHhhcCCeEEEE
Confidence 34799999999999999999999999999999999776420 0 1121 123455677777777767777777778888
Q ss_pred eCCceeechHHHHhhcC--------------CcEEEEECCHHHHHhh---hcCCCCCCC
Q 028019 170 AGNGAVQSSANLALLRH--------------GISLWIDVPPGMVARM---DHSGFPESE 211 (215)
Q Consensus 170 ~G~g~Vl~~~~r~~L~~--------------g~vV~Ld~p~e~l~eR---~~rg~~~~~ 211 (215)
|+ .+....|+.|+. -.+|+|.++.+++.+| .+..|=|.+
T Consensus 91 CS---aLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~ 146 (191)
T KOG3354|consen 91 CS---ALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPAD 146 (191)
T ss_pred hH---HHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHH
Confidence 75 244556665541 1689999999999999 344454443
No 24
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.39 E-value=2.6e-12 Score=105.11 Aligned_cols=109 Identities=18% Similarity=0.270 Sum_probs=68.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCe
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~ 166 (215)
++..|+|+|+|||||||+|+.|++.++ ..+++.|.+.+. ++ ..- ++.............+...+...+..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~-~~-~~~---~~~~~~~~~~~~~~~l~~~l~~~g~~ 80 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREI-LG-HYG---YDKQSRIEMALKRAKLAKFLADQGMI 80 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhh-cC-CCC---CCHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 678999999999999999999999996 778898887553 22 100 11111110111111222223344567
Q ss_pred EEEeCCcee--echHHHHhhcCCcEEEEECCHHHHHhhhcC
Q 028019 167 VVCAGNGAV--QSSANLALLRHGISLWIDVPPGMVARMDHS 205 (215)
Q Consensus 167 VLa~G~g~V--l~~~~r~~L~~g~vV~Ld~p~e~l~eR~~r 205 (215)
||+++.+.+ ....++..+...++|||++|++++.+|..+
T Consensus 81 VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 81 VIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred EEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchh
Confidence 887766543 223344444456789999999999999543
No 25
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.39 E-value=2.3e-12 Score=105.77 Aligned_cols=110 Identities=26% Similarity=0.405 Sum_probs=67.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh-----CCceeecchhHHHHhCCCchHHHHhhhh-hHHHHHHHHHHHHHHHcCCC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESD-EKGYQQAETEVLKQLSSMGR 165 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L-----g~~~ld~D~li~~~~G~~si~e~~~~~g-e~~fr~~e~~vL~~L~~~~~ 165 (215)
++..|||+|.|||||||+|+.|.++| ...++|.|.++..... .+ -|...+ ++..++ -.++-.-|...+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~--dl--~fs~~dR~e~~rr-~~~~A~ll~~~G~ 75 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNA--DL--GFSKEDREENIRR-IAEVAKLLADQGI 75 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTT--T----SSHHHHHHHHHH-HHHHHHHHHHTTS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCC--CC--CCCHHHHHHHHHH-HHHHHHHHHhCCC
Confidence 46789999999999999999999998 3558999988765321 11 132222 222232 2333344555555
Q ss_pred eEEEeCCceeechHHHHhhc----C--CcEEEEECCHHHHHhhhcCCCC
Q 028019 166 LVVCAGNGAVQSSANLALLR----H--GISLWIDVPPGMVARMDHSGFP 208 (215)
Q Consensus 166 ~VLa~G~g~Vl~~~~r~~L~----~--g~vV~Ld~p~e~l~eR~~rg~~ 208 (215)
.||.+- +-...+.|++.+ . -+.|||++|.++|.+|+.+|..
T Consensus 76 ivIva~--isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~KglY 122 (156)
T PF01583_consen 76 IVIVAF--ISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPKGLY 122 (156)
T ss_dssp EEEEE------SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTTSHH
T ss_pred eEEEee--ccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCchhHH
Confidence 555432 122344455443 3 3779999999999999876653
No 26
>PRK04182 cytidylate kinase; Provisional
Probab=99.37 E-value=8.2e-12 Score=101.12 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=65.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH---hCCCchHHHHhhhhhHHH---HHHHHHHHHHHH-cCCCe
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA---AGGESAAKAFRESDEKGY---QQAETEVLKQLS-SMGRL 166 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~---~G~~si~e~~~~~ge~~f---r~~e~~vL~~L~-~~~~~ 166 (215)
+.|+|+|++||||||+|+.||+++|++++|.|+++.+. .| .++.++. ..++..+ +..+.. +..+. ....+
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g-~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 77 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERG-MSLEEFN-KYAEEDPEIDKEIDRR-QLEIAEKEDNV 77 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcC-CCHHHHH-HHhhcCchHHHHHHHH-HHHHHhcCCCE
Confidence 36999999999999999999999999999988776654 34 5555443 2333222 223322 33444 34455
Q ss_pred EEEeC-CceeechHHHHhhcCCcEEEEECCHHHHHhh
Q 028019 167 VVCAG-NGAVQSSANLALLRHGISLWIDVPPGMVARM 202 (215)
Q Consensus 167 VLa~G-~g~Vl~~~~r~~L~~g~vV~Ld~p~e~l~eR 202 (215)
|+... .+++..+ ..+++|||++|++++.+|
T Consensus 78 Vi~g~~~~~~~~~------~~~~~V~l~a~~e~~~~R 108 (180)
T PRK04182 78 VLEGRLAGWMAKD------YADLKIWLKAPLEVRAER 108 (180)
T ss_pred EEEEeecceEecC------CCCEEEEEECCHHHHHHH
Confidence 55421 2232221 156889999999999999
No 27
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.35 E-value=1.1e-11 Score=102.53 Aligned_cols=101 Identities=19% Similarity=0.237 Sum_probs=68.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh---CCCchHHHHhhhhhHHH--HHHHHHHHHHHHcCCCeEE
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA---GGESAAKAFRESDEKGY--QQAETEVLKQLSSMGRLVV 168 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~---G~~si~e~~~~~ge~~f--r~~e~~vL~~L~~~~~~VL 168 (215)
+.|.|.|+|||||||+|+.||+++|++++++..++.+++ | +++.++. +..+..+ ...-.+-...++.++++||
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~g-msl~ef~-~~AE~~p~iD~~iD~rq~e~a~~~nvVl 78 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERG-MSLEEFS-RYAEEDPEIDKEIDRRQKELAKEGNVVL 78 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcC-CCHHHHH-HHHhcCchhhHHHHHHHHHHHHcCCeEE
Confidence 468899999999999999999999999999999988864 4 7777642 3333211 1111122344555566666
Q ss_pred Ee-CCceeechHHHHhhcCCcEEEEECCHHHHHhh
Q 028019 169 CA-GNGAVQSSANLALLRHGISLWIDVPPGMVARM 202 (215)
Q Consensus 169 a~-G~g~Vl~~~~r~~L~~g~vV~Ld~p~e~l~eR 202 (215)
.. -.||+.. -.+++.|||.+|.+++++|
T Consensus 79 egrLA~Wi~k------~~adlkI~L~Apl~vRa~R 107 (179)
T COG1102 79 EGRLAGWIVR------EYADLKIWLKAPLEVRAER 107 (179)
T ss_pred hhhhHHHHhc------cccceEEEEeCcHHHHHHH
Confidence 31 0111111 0167889999999999999
No 28
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.34 E-value=6.2e-12 Score=99.97 Aligned_cols=105 Identities=22% Similarity=0.230 Sum_probs=68.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHH-----HhCCCchHHHHhhhhhHHHHHHHHHHHHHHH-cCCCeEE
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE-----AAGGESAAKAFRESDEKGYQQAETEVLKQLS-SMGRLVV 168 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~-----~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~-~~~~~VL 168 (215)
.|+|+|+|||||||+|+.|++.+++.+++.|.++.. ...+... .+...+.+++......+..+. ....+|+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~vVi 77 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPL---NDEDRWPWLQALTDALLAKLASAGEGVVV 77 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCC---CccchhhHHHHHHHHHHHHHHhCCCCEEE
Confidence 378999999999999999999999999999998864 1111211 111234444555444444443 3445666
Q ss_pred EeCCceeechHHHHhhc------CCcEEEEECCHHHHHhh-hcC
Q 028019 169 CAGNGAVQSSANLALLR------HGISLWIDVPPGMVARM-DHS 205 (215)
Q Consensus 169 a~G~g~Vl~~~~r~~L~------~g~vV~Ld~p~e~l~eR-~~r 205 (215)
.++. .....++.++ ...+|||++|.+++.+| ..|
T Consensus 78 d~~~---~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (150)
T cd02021 78 ACSA---LKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR 118 (150)
T ss_pred Eecc---ccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc
Confidence 6442 2344444443 12689999999999999 444
No 29
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=4e-12 Score=103.59 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=72.2
Q ss_pred EccCCCcHHHHHHHHHHHhCCceeecchhHHHHh-----CCCchHHHHhhhhhHHHHHHHHHHHHHHHcC-CCeEEEeCC
Q 028019 99 VGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-----GGESAAKAFRESDEKGYQQAETEVLKQLSSM-GRLVVCAGN 172 (215)
Q Consensus 99 iG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~-----G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~-~~~VLa~G~ 172 (215)
+|++||||||+|+.||++||++|+|.|+++.... .|.++ -+++.+.|...+... +..+... ...||+|+
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL---~DdDR~pWL~~l~~~-~~~~~~~~~~~vi~CS- 75 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPL---NDDDRWPWLEALGDA-AASLAQKNKHVVIACS- 75 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCC---CcchhhHHHHHHHHH-HHHhhcCCCceEEecH-
Confidence 6999999999999999999999999999987532 12332 123344555554444 3343333 33677764
Q ss_pred ceeechHHHHhhcC---C-cEEEEECCHHHHHhh---hcCCCCC
Q 028019 173 GAVQSSANLALLRH---G-ISLWIDVPPGMVARM---DHSGFPE 209 (215)
Q Consensus 173 g~Vl~~~~r~~L~~---g-~vV~Ld~p~e~l~eR---~~rg~~~ 209 (215)
.++...|+.|+. + .+|||+.+++++.+| .++.|=|
T Consensus 76 --ALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~ 117 (161)
T COG3265 76 --ALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMP 117 (161)
T ss_pred --HHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCC
Confidence 356778888872 2 679999999999999 4544444
No 30
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.34 E-value=6.3e-12 Score=98.37 Aligned_cols=110 Identities=21% Similarity=0.183 Sum_probs=66.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHH-HhhhhhHHHHHHHHHHHHHHHcC-CCeEEEeCC
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKA-FRESDEKGYQQAETEVLKQLSSM-GRLVVCAGN 172 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~-~~~~ge~~fr~~e~~vL~~L~~~-~~~VLa~G~ 172 (215)
.|+++|+|||||||+++.|++.+++.+++.|.+.....+ ...+.. ....-.....+.-...+...+.. ...||..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~-- 77 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAG-EDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDN-- 77 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCC-SSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEES--
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcc-cccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceecc--
Confidence 489999999999999999999999999999999888765 211110 00001111122222333333333 3455532
Q ss_pred ceeechHHHHh----hc-CC---cEEEEECCHHHHHhh-hcCCCC
Q 028019 173 GAVQSSANLAL----LR-HG---ISLWIDVPPGMVARM-DHSGFP 208 (215)
Q Consensus 173 g~Vl~~~~r~~----L~-~g---~vV~Ld~p~e~l~eR-~~rg~~ 208 (215)
. ......++. ++ .+ .+|||++|.+++.+| ..|+..
T Consensus 78 ~-~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 78 T-NLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNRE 121 (143)
T ss_dssp S---SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred C-cCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence 1 233344432 22 33 789999999999999 455444
No 31
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.34 E-value=1.3e-11 Score=101.42 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=66.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCC-----chHHHHhhhhhHHHHHHHHHHH-HHHHc---CCC
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-----SAAKAFRESDEKGYQQAETEVL-KQLSS---MGR 165 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~-----si~e~~~~~ge~~fr~~e~~vL-~~L~~---~~~ 165 (215)
+|+|+|+|||||||+|+.||+++|+.+++.|+++++..... .+.+.+.. |..........++ ..+.. ...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~l~~~~~~~~ 79 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDS-GKLVPDEIVIKLLKERLKKPDCKKG 79 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHc-CCccCHHHHHHHHHHHHhcccccCC
Confidence 48999999999999999999999999999999987754211 11122211 1111111222222 22322 234
Q ss_pred eEEEeCCceeechHHHHhh--------cCCcEEEEECCHHHHHhh-hcCCCC
Q 028019 166 LVVCAGNGAVQSSANLALL--------RHGISLWIDVPPGMVARM-DHSGFP 208 (215)
Q Consensus 166 ~VLa~G~g~Vl~~~~r~~L--------~~g~vV~Ld~p~e~l~eR-~~rg~~ 208 (215)
+||. |..-+....+.+ ...++|||++|.+++.+| ..|+..
T Consensus 80 ~vld---g~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~ 128 (194)
T cd01428 80 FILD---GFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRIC 128 (194)
T ss_pred EEEe---CCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence 5553 222222222222 235899999999999999 566543
No 32
>PLN02674 adenylate kinase
Probab=99.33 E-value=7.7e-12 Score=109.37 Aligned_cols=110 Identities=11% Similarity=0.099 Sum_probs=77.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh------CCCchHHHHhhhhhHHHHHHHHHHHHHHHcCC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~------G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~ 164 (215)
...++|+|+|+|||||+|+|+.||+++|+.++++++++.+.. | ..+.++++ .|+....++...++.......
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g-~~i~~~~~-~G~lvpd~iv~~lv~~~l~~~ 106 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLG-IKAKEAMD-KGELVSDDLVVGIIDEAMKKP 106 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhh-HHHHHHHH-cCCccCHHHHHHHHHHHHhCc
Confidence 345889999999999999999999999999999999988763 2 33444443 566666666666555544322
Q ss_pred CeEEEeCCceeechH--H---HH----hhc-----CCcEEEEECCHHHHHhh-hcCC
Q 028019 165 RLVVCAGNGAVQSSA--N---LA----LLR-----HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 165 ~~VLa~G~g~Vl~~~--~---r~----~L~-----~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
.++.|++++.. + .+ .+. .+.+|+|++|.+++.+| .+|.
T Consensus 107 ----~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 107 ----SCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred ----CcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 23355666421 1 11 221 35899999999999999 5553
No 33
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.32 E-value=2e-11 Score=99.88 Aligned_cols=109 Identities=14% Similarity=0.219 Sum_probs=65.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCC-Cc----hHHHHhhhhhHHHHHHHHHHHHHHHcC---CCe
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES----AAKAFRESDEKGYQQAETEVLKQLSSM---GRL 166 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~-~s----i~e~~~~~ge~~fr~~e~~vL~~L~~~---~~~ 166 (215)
.|+|+|+|||||||+|+.||+++|+.++++++++.+.... .. +.+++ ..|.....+....++...... ..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~~ 79 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQADGSKKF 79 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHhccCCCcE
Confidence 4899999999999999999999999999998887665321 11 11222 123222223333334333221 123
Q ss_pred EEEeCCceeechHHHH----hh----cCCcEEEEECCHHHHHhh-hcCCC
Q 028019 167 VVCAGNGAVQSSANLA----LL----RHGISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 167 VLa~G~g~Vl~~~~r~----~L----~~g~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
||. |..-+...+. .+ ..+++|||++|.+++.+| .+|+.
T Consensus 80 vlD---g~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 80 LID---GFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred EEe---CCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 332 2222222222 12 235799999999999999 55554
No 34
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.32 E-value=1.5e-11 Score=103.07 Aligned_cols=116 Identities=22% Similarity=0.369 Sum_probs=72.5
Q ss_pred HhHhhccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceeecchhHHHHhCCCchHHHHhhhhh-HHHHHHHHHHHH
Q 028019 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAAGGESAAKAFRESDE-KGYQQAETEVLK 158 (215)
Q Consensus 85 ~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D~li~~~~G~~si~e~~~~~ge-~~fr~~e~~vL~ 158 (215)
+.-...-++..||++|++||||||+|..|+++| | ..++|.|+++........ |...+. +..| .-.+|-+
T Consensus 15 r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLg----Fs~edR~eniR-RvaevAk 89 (197)
T COG0529 15 REALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLG----FSREDRIENIR-RVAEVAK 89 (197)
T ss_pred HHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCC----CChHHHHHHHH-HHHHHHH
Confidence 333444577899999999999999999999998 3 457999999876542111 333332 2222 2234334
Q ss_pred HHHcCCCeEEEeCCceee-chHHHH----hhcC--CcEEEEECCHHHHHhhhcCCCC
Q 028019 159 QLSSMGRLVVCAGNGAVQ-SSANLA----LLRH--GISLWIDVPPGMVARMDHSGFP 208 (215)
Q Consensus 159 ~L~~~~~~VLa~G~g~Vl-~~~~r~----~L~~--g~vV~Ld~p~e~l~eR~~rg~~ 208 (215)
-+...+-.||. .++. ..+.|+ .+.. .+-||+++|.++|.+||.+|+.
T Consensus 90 ll~daG~iviv---a~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLY 143 (197)
T COG0529 90 LLADAGLIVIV---AFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLY 143 (197)
T ss_pred HHHHCCeEEEE---EeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHH
Confidence 44433333332 1222 123333 3333 3679999999999999877764
No 35
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.31 E-value=4.2e-12 Score=122.66 Aligned_cols=120 Identities=18% Similarity=0.320 Sum_probs=75.9
Q ss_pred CchhhHHHHHHhHhhcc-----CCcEEEEEccCCCcHHHHHHHHHHHhCC------ceeecchhHHHHhCCCchHHHHhh
Q 028019 75 DPSFAVKKKAADISTEL-----KGTSVFLVGMNNAIKTHLGKFLADALRY------YYFDSDSLVFEAAGGESAAKAFRE 143 (215)
Q Consensus 75 ~~~~~~~~~~~~~~~~l-----~~~~I~LiG~pGSGKSTlAk~LA~~Lg~------~~ld~D~li~~~~G~~si~e~~~~ 143 (215)
.+-+.-|..++.+.... ++..|+|+|+|||||||+|+.||++|+. .++|.|.+...+.| .
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~g-e-------- 439 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSS-E-------- 439 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccC-C--------
Confidence 33444555555554442 6679999999999999999999999996 89999988665544 1
Q ss_pred hhhHHHHHHHHHH-HHHHHcCCCeEEEeCCceeec---------hHHHHhhc-CC--cEEEEECCHHHHHhhhcCC
Q 028019 144 SDEKGYQQAETEV-LKQLSSMGRLVVCAGNGAVQS---------SANLALLR-HG--ISLWIDVPPGMVARMDHSG 206 (215)
Q Consensus 144 ~ge~~fr~~e~~v-L~~L~~~~~~VLa~G~g~Vl~---------~~~r~~L~-~g--~vV~Ld~p~e~l~eR~~rg 206 (215)
..|+..+.+. +..+......++.+|++++++ ..+++.++ .+ ++|||++|.++|.+|..++
T Consensus 440 ---~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~ 512 (568)
T PRK05537 440 ---LGFSKEDRDLNILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKG 512 (568)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcccc
Confidence 1122211111 111111112234445555554 35666665 34 5899999999999996543
No 36
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.31 E-value=2e-11 Score=99.63 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=35.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~ 131 (215)
.+.|+|+|+|||||||+++.|++.+|+.++++++++...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~ 41 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAE 41 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 467999999999999999999999999999998887664
No 37
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.30 E-value=3.9e-12 Score=105.49 Aligned_cols=113 Identities=15% Similarity=0.194 Sum_probs=71.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHH---------------
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVL--------------- 157 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL--------------- 157 (215)
+..|+|+|++||||||+++.|+..++..+++.|..+..... ....+.+...++..++..|...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~ 80 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPAS-AGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI 80 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccc-hhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH
Confidence 56899999999999999999999998888888876664322 22223333333344443332221
Q ss_pred --HHHHcCCCeEEEeCCceeechHHHHhhc-CCcEEEEECCHHHHHhh-hcCCC
Q 028019 158 --KQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 158 --~~L~~~~~~VLa~G~g~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
...+..+..||..|++.+. ...++.+. ...+|||++|.+++.+| ..|+.
T Consensus 81 ~~~~~l~~g~~VI~~G~~~~~-~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~ 133 (186)
T PRK10078 81 EIDLWLHAGFDVLVNGSRAHL-PQARARYQSALLPVCLQVSPEILRQRLENRGR 133 (186)
T ss_pred HHHHHHhCCCEEEEeChHHHH-HHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC
Confidence 2222334556665543332 33444444 45789999999999999 45543
No 38
>PRK14531 adenylate kinase; Provisional
Probab=99.29 E-value=4.2e-11 Score=99.19 Aligned_cols=113 Identities=13% Similarity=0.126 Sum_probs=66.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh-CCCchHHHHh---hhhhHHHHHHHHHHH-HHHHc--CCC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAAKAFR---ESDEKGYQQAETEVL-KQLSS--MGR 165 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~-G~~si~e~~~---~~ge~~fr~~e~~vL-~~L~~--~~~ 165 (215)
+++|+|+|+|||||||+|+.||+.+|+.++++++++.... ++....+... ..|+......-..++ ..+.. ...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g 81 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGG 81 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCc
Confidence 4579999999999999999999999999999987776542 2122221111 122211111111112 22222 233
Q ss_pred eEEEeCCceeechHHHHh----hc-----CCcEEEEECCHHHHHhh-hcCCCC
Q 028019 166 LVVCAGNGAVQSSANLAL----LR-----HGISLWIDVPPGMVARM-DHSGFP 208 (215)
Q Consensus 166 ~VLa~G~g~Vl~~~~r~~----L~-----~g~vV~Ld~p~e~l~eR-~~rg~~ 208 (215)
+||. |..-+...... +. ...+|||++|.+++.+| ..|+..
T Consensus 82 ~ilD---Gfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~ 131 (183)
T PRK14531 82 WLLD---GFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRA 131 (183)
T ss_pred EEEe---CCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCC
Confidence 5542 23222222221 21 25799999999999999 677654
No 39
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.28 E-value=4.1e-11 Score=101.49 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=66.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCC-----chHHHHhhhhhHHHHHHHHHHHH-HHHcC---C
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-----SAAKAFRESDEKGYQQAETEVLK-QLSSM---G 164 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~-----si~e~~~~~ge~~fr~~e~~vL~-~L~~~---~ 164 (215)
++|+|+|+|||||||+|+.||+++|+.++++++++.+..... .+.++++ .|.....+....++. .+... .
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~-~g~~~p~~~~~~~i~~~l~~~~~~~ 79 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMD-AGELVPDEIVIGLVKERLAQPDCKN 79 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhccCccC
Confidence 369999999999999999999999999999988887653211 1222222 122222222233333 33321 2
Q ss_pred CeEEEeCCceeechHHHHhh----c-----CCcEEEEECCHHHHHhh-hcCCC
Q 028019 165 RLVVCAGNGAVQSSANLALL----R-----HGISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 165 ~~VLa~G~g~Vl~~~~r~~L----~-----~g~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
++||. |..-+....+.| . ...+|+|++|.+++.+| .+|.+
T Consensus 80 g~VlD---GfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (215)
T PRK00279 80 GFLLD---GFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRI 129 (215)
T ss_pred CEEEe---cCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcc
Confidence 34443 222222222222 2 34799999999999999 66653
No 40
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.28 E-value=3.2e-11 Score=94.41 Aligned_cols=97 Identities=20% Similarity=0.298 Sum_probs=62.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCC-c
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN-G 173 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~-g 173 (215)
.|+|+|+|||||||+|+.||+++|+++++.|.+..+..+ ....... ....++....+.+.++.....+||..-. +
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~-~~~~~~~---~~~~i~~~l~~~~~~~~~~~~~Vidg~~~~ 76 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVG-KLASEVA---AIPEVRKALDERQRELAKKPGIVLEGRDIG 76 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHH-HHHHHhc---ccHhHHHHHHHHHHHHhhCCCEEEEeeeee
Confidence 388999999999999999999999999999966544322 0000000 0112333333445556555567774211 1
Q ss_pred eeechHHHHhhc-CCcEEEEECCHHHHHhh
Q 028019 174 AVQSSANLALLR-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 174 ~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR 202 (215)
++. +. .+++|||++|++.+.+|
T Consensus 77 ~~~-------~~~~~~~i~l~~~~~~r~~R 99 (147)
T cd02020 77 TVV-------FPDADLKIFLTASPEVRAKR 99 (147)
T ss_pred eEE-------cCCCCEEEEEECCHHHHHHH
Confidence 111 22 56899999999999988
No 41
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.28 E-value=4.2e-11 Score=101.10 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=64.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCC-----chHHHHhhhhhHHHHHHHHH-HHHHHHc----CC
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-----SAAKAFRESDEKGYQQAETE-VLKQLSS----MG 164 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~-----si~e~~~~~ge~~fr~~e~~-vL~~L~~----~~ 164 (215)
+|+|+|+|||||||+|+.||+++|++++++++++++..... .+.++.+ .|...-.+.-.. +...+.. ..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~-~g~~vp~~~~~~l~~~~i~~~~~~~~ 79 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYME-KGELVPDEIVNQLVKERLTQNQDNEN 79 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCcccCC
Confidence 48999999999999999999999999999999887653211 1112211 121111111122 2223332 12
Q ss_pred CeEEEeCCceeechHHHHhh------cCCcEEEEECCHHHHHhh-hcCC
Q 028019 165 RLVVCAGNGAVQSSANLALL------RHGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 165 ~~VLa~G~g~Vl~~~~r~~L------~~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
.+||. |..-+....+.| ....+|||++|.+++.+| ..|.
T Consensus 80 ~~ilD---GfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 80 GFILD---GFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred cEEEe---CCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 35543 222222222222 246899999999999999 5564
No 42
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.27 E-value=2.7e-12 Score=104.96 Aligned_cols=106 Identities=19% Similarity=0.288 Sum_probs=72.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHH--HHHHHHHHHHHHHc---CCCe
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKG--YQQAETEVLKQLSS---MGRL 166 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~--fr~~e~~vL~~L~~---~~~~ 166 (215)
-.+.|+++|.||+||||+|.+||+.+|+++++..+++++.. .+..+++++ .---|..++..|.. .++.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~-------l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~ 78 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN-------LYEGYDEEYKCHILDEDKVLDELEPLMIEGGN 78 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc-------chhcccccccCccccHHHHHHHHHHHHhcCCc
Confidence 34679999999999999999999999999999999988742 122222211 11123445554432 2334
Q ss_pred EEEeCCceeechHHHHhhc---CCcEEEEECCHHHHHhh-hcCCCCCCCC
Q 028019 167 VVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-DHSGFPESEV 212 (215)
Q Consensus 167 VLa~G~g~Vl~~~~r~~L~---~g~vV~Ld~p~e~l~eR-~~rg~~~~~~ 212 (215)
||. -...+++. .++||.|.+|.+++++| ..|||...+|
T Consensus 79 IVD--------yHgCd~FperwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki 120 (176)
T KOG3347|consen 79 IVD--------YHGCDFFPERWFDLVVVLRTPNSVLYDRLKSRGYSEKKI 120 (176)
T ss_pred EEe--------ecccCccchhheeEEEEEecCchHHHHHHHHcCCCHHHH
Confidence 443 22222222 46899999999999999 8999988765
No 43
>PRK06762 hypothetical protein; Provisional
Probab=99.27 E-value=2e-11 Score=98.78 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=63.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh--CCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEe
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L--g~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~ 170 (215)
++.|+|+|+|||||||+|+.|++++ ++.+++.|.+.....+... ..+...+.... .........+..||..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~------~~~~~~~~~~~-~~~~~~~~~g~~vild 74 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKD------GPGNLSIDLIE-QLVRYGLGHCEFVILE 74 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccC------CCCCcCHHHHH-HHHHHHHhCCCEEEEc
Confidence 6789999999999999999999999 5778899988876543111 00111111111 2222233334444432
Q ss_pred CCceeechHHH---Hhhc-----CCcEEEEECCHHHHHhh-hcCC
Q 028019 171 GNGAVQSSANL---ALLR-----HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 171 G~g~Vl~~~~r---~~L~-----~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
+ .......+ ..+. ...+|||++|.+++.+| ..|+
T Consensus 75 ~--~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~ 117 (166)
T PRK06762 75 G--ILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRP 117 (166)
T ss_pred h--hhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccc
Confidence 2 22222222 2221 23789999999999999 4554
No 44
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.25 E-value=7.2e-12 Score=114.25 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=71.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCC------ceeecchhH-----HHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCC
Q 028019 96 VFLVGMNNAIKTHLGKFLADALRY------YYFDSDSLV-----FEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~Lg~------~~ld~D~li-----~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~ 164 (215)
++|+|+|||||||+++.|++.|+. .+++.|+++ +...| .+++++| ..||+ ++.++++
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~-~~~~~~~-----k~~R~----~i~~~le-- 69 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQS-REIPSQW-----KQFRQ----ELLKYLE-- 69 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcC-CCcHHHH-----HHHHH----HHHHHHH--
Confidence 689999999999999999988863 389999998 44455 7777765 34563 3333333
Q ss_pred CeEEEeCCceeech----------HHHHhhc-CCcEEEEECCHHHHHhh
Q 028019 165 RLVVCAGNGAVQSS----------ANLALLR-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 165 ~~VLa~G~g~Vl~~----------~~r~~L~-~g~vV~Ld~p~e~l~eR 202 (215)
..|+++|+|+.+.+ .++..|+ .|++|||+++.+....|
T Consensus 70 ~~v~a~~~g~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~r 118 (340)
T TIGR03575 70 HFLVAVINGSELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHS 118 (340)
T ss_pred HHHHHhcCcccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHH
Confidence 34667888887643 3446666 78999999999999988
No 45
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.23 E-value=9.5e-11 Score=101.44 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=38.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
.+.+|+|+|+|||||||+|+.||+.+|++++++|+++++..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~ 45 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEI 45 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHh
Confidence 45779999999999999999999999999999999998764
No 46
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.23 E-value=8.7e-11 Score=96.02 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=64.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCe
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~ 166 (215)
++..|+|+|+|||||||+|+.|++.+. +.++|.|.+......+... ..+.....++... .+-..+...+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~---~~~~r~~~~~~~~-~~a~~~~~~g~- 77 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGF---SKEDRDTNIRRIG-FVANLLTRHGV- 77 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCC---ChhhHHHHHHHHH-HHHHHHHhCCC-
Confidence 467899999999999999999999983 6779999887654321111 0111222333322 12222223333
Q ss_pred EEEeCCceeechHHHHhhc----CCcEEEEECCHHHHHhhhc
Q 028019 167 VVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARMDH 204 (215)
Q Consensus 167 VLa~G~g~Vl~~~~r~~L~----~g~vV~Ld~p~e~l~eR~~ 204 (215)
++.+++... ....++.++ ...+|||++|.+++.+|+.
T Consensus 78 ~vi~~~~~~-~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~~ 118 (175)
T PRK00889 78 IVLVSAISP-YRETREEVRANIGNFLEVFVDAPLEVCEQRDV 118 (175)
T ss_pred EEEEecCCC-CHHHHHHHHhhcCCeEEEEEcCCHHHHHHhCc
Confidence 333333322 344455443 3578999999999999953
No 47
>PRK07261 topology modulation protein; Provisional
Probab=99.23 E-value=5e-11 Score=98.23 Aligned_cols=94 Identities=9% Similarity=0.113 Sum_probs=62.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCCc
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~g 173 (215)
++|+|+|+|||||||+|+.|++.+++++++.|.+.+.. ++.. ...+.+. .. +..+..+..+|+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~-~~~~-------~~~~~~~---~~-~~~~~~~~~wIidg--- 65 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP-NWQE-------RDDDDMI---AD-ISNFLLKHDWIIDG--- 65 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc-cccc-------CCHHHHH---HH-HHHHHhCCCEEEcC---
Confidence 46999999999999999999999999999999987642 1111 1111111 12 23334445677752
Q ss_pred eeechHHHHhh-cCCcEEEEECCHHHHHhh
Q 028019 174 AVQSSANLALL-RHGISLWIDVPPGMVARM 202 (215)
Q Consensus 174 ~Vl~~~~r~~L-~~g~vV~Ld~p~e~l~eR 202 (215)
..........+ +.+.+|||++|..+|..|
T Consensus 66 ~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R 95 (171)
T PRK07261 66 NYSWCLYEERMQEADQIIFLNFSRFNCLYR 95 (171)
T ss_pred cchhhhHHHHHHHCCEEEEEcCCHHHHHHH
Confidence 22221111222 368999999999999988
No 48
>PRK14527 adenylate kinase; Provisional
Probab=99.21 E-value=1.7e-10 Score=95.85 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=66.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCC-CchHHHHhh---hhhHHHHHHHHHHHH-HHHc--CC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ESAAKAFRE---SDEKGYQQAETEVLK-QLSS--MG 164 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~-~si~e~~~~---~ge~~fr~~e~~vL~-~L~~--~~ 164 (215)
+++.|+|+|+|||||||+|+.||+++|+.+++.|+++...... ......... .|...-.+.-..++. .+.. ..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~~ 84 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEPV 84 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCC
Confidence 5788999999999999999999999999999999988765421 112111111 111111111122222 2222 12
Q ss_pred CeEEEeCCceeechHHHHhh----c-----CCcEEEEECCHHHHHhh-hcCCC
Q 028019 165 RLVVCAGNGAVQSSANLALL----R-----HGISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 165 ~~VLa~G~g~Vl~~~~r~~L----~-----~g~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
++||. |..-+....+.+ + ...+|||++|.+++.+| .+|+.
T Consensus 85 ~~VlD---Gfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~ 134 (191)
T PRK14527 85 RVIFD---GFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERAR 134 (191)
T ss_pred cEEEc---CCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcc
Confidence 35553 232222222222 1 24689999999999999 56653
No 49
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.21 E-value=9.5e-11 Score=103.20 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=67.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh-CCceeecchhHHHHhCCCchHH-HHhhhhhHHHHHHHHHHHHHHHcC-CCeEEE
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESAAK-AFRESDEKGYQQAETEVLKQLSSM-GRLVVC 169 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L-g~~~ld~D~li~~~~G~~si~e-~~~~~ge~~fr~~e~~vL~~L~~~-~~~VLa 169 (215)
++.|+++|+|||||||+|+.|++++ ++.+++.|.+.....+...... .+...++..........+...... ...||+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid 81 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIIS 81 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 4678999999999999999999999 9999999998877644111111 111122222233333333433333 345554
Q ss_pred eCCceeechHHHHh----hc-CC---cEEEEECCHHHHHhh-hcCC
Q 028019 170 AGNGAVQSSANLAL----LR-HG---ISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 170 ~G~g~Vl~~~~r~~----L~-~g---~vV~Ld~p~e~l~eR-~~rg 206 (215)
+.. ..+..++. ++ .+ .+|||++|.+++.+| .+|+
T Consensus 82 ~~~---~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~ 124 (300)
T PHA02530 82 DTN---LNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRG 124 (300)
T ss_pred CCC---CCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccC
Confidence 322 22333322 22 22 369999999999999 5664
No 50
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.21 E-value=2.4e-10 Score=91.97 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=63.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhC--CCchHHHHhhhhh-HHHHHHHHHHHHHHH-cCCCeEEE
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDE-KGYQQAETEVLKQLS-SMGRLVVC 169 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G--~~si~e~~~~~ge-~~fr~~e~~vL~~L~-~~~~~VLa 169 (215)
+.|.|+|++||||||+|+.||+.+|+++++.|+++++..+ +.+..++.....+ ......-...+..+. ....+||.
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi~ 80 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVLE 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEEE
Confidence 3689999999999999999999999999999887776542 1333221111000 111111122233333 34456664
Q ss_pred eCC-ceeechHHHHhhcCCcEEEEECCHHHHHhh
Q 028019 170 AGN-GAVQSSANLALLRHGISLWIDVPPGMVARM 202 (215)
Q Consensus 170 ~G~-g~Vl~~~~r~~L~~g~vV~Ld~p~e~l~eR 202 (215)
... +++..+ ..+++|||++|.+++.+|
T Consensus 81 g~~~~~~~~~------~~d~~v~v~a~~~~r~~R 108 (171)
T TIGR02173 81 SRLAGWIVRE------YADVKIWLKAPLEVRARR 108 (171)
T ss_pred ecccceeecC------CcCEEEEEECCHHHHHHH
Confidence 211 122110 135889999999999999
No 51
>PRK06547 hypothetical protein; Provisional
Probab=99.21 E-value=1.2e-11 Score=102.48 Aligned_cols=113 Identities=22% Similarity=0.267 Sum_probs=70.6
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCc-----hHHHHhhhhhHHHHHHH--HHHHHH--HH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAE--TEVLKQ--LS 161 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~s-----i~e~~~~~ge~~fr~~e--~~vL~~--L~ 161 (215)
-.+..|.|+|++||||||+|+.|++.+++++++.|+++....+ .. +.+.+...|+..++... ...... ..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~l 91 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVSV 91 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEEe
Confidence 4567788889999999999999999999999999998865332 21 11112112221111100 000000 01
Q ss_pred cCCCeEEEeCCceeechHHHHhhc-CC--cEEEEECCHHHHHhh-hcC
Q 028019 162 SMGRLVVCAGNGAVQSSANLALLR-HG--ISLWIDVPPGMVARM-DHS 205 (215)
Q Consensus 162 ~~~~~VLa~G~g~Vl~~~~r~~L~-~g--~vV~Ld~p~e~l~eR-~~r 205 (215)
.....||..|.+.+ .+..++.+. .+ +.|||++|.+++.+| ..|
T Consensus 92 ~~~~vVIvEG~~al-~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~R 138 (172)
T PRK06547 92 EPGRRLIIEGVGSL-TAANVALASLLGEVLTVWLDGPEALRKERALAR 138 (172)
T ss_pred CCCCeEEEEehhhc-cHHHHHHhccCCCEEEEEEECCHHHHHHHHHhc
Confidence 12345666776665 466666664 33 789999999999999 444
No 52
>PRK13808 adenylate kinase; Provisional
Probab=99.19 E-value=1.7e-10 Score=105.02 Aligned_cols=108 Identities=10% Similarity=0.117 Sum_probs=64.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCC-----CchHHHHhhhhhHHHHHHHHHHH-HHHHc---CC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVL-KQLSS---MG 164 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~-----~si~e~~~~~ge~~fr~~e~~vL-~~L~~---~~ 164 (215)
++|+|+|+|||||||+++.||+.+|+.+++.|+++.+.... ..+.+++.. |.....+.-..++ ..|.. ..
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~-G~lVPdeiv~~li~e~l~~~~~~~ 79 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMAS-GGLVPDEVVVGIISDRIEQPDAAN 79 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHhcccccC
Confidence 36999999999999999999999999999999998765320 222233322 2111111111122 22222 12
Q ss_pred CeEEEeCCceeechHHHHh----h-----cCCcEEEEECCHHHHHhh-hcC
Q 028019 165 RLVVCAGNGAVQSSANLAL----L-----RHGISLWIDVPPGMVARM-DHS 205 (215)
Q Consensus 165 ~~VLa~G~g~Vl~~~~r~~----L-----~~g~vV~Ld~p~e~l~eR-~~r 205 (215)
++||. |+.-+.+..+. + ..+++|||++|++++.+| ..|
T Consensus 80 G~ILD---GFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 80 GFILD---GFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred CEEEe---CCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence 34442 22111111111 2 257899999999999999 444
No 53
>PRK01184 hypothetical protein; Provisional
Probab=99.19 E-value=1.6e-10 Score=94.96 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=62.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHH---HH-----HHHHHc-CC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET---EV-----LKQLSS-MG 164 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~---~v-----L~~L~~-~~ 164 (215)
+.|+|+|+|||||||+++ +++++|++++++|+++.+......++.+.+..|+..+...+. .+ ...+.. ..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREKGD 80 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhcCC
Confidence 579999999999999998 788999999999777665431011111112222221111111 11 122222 12
Q ss_pred CeEEEeCCceeechHHHHh----hc-CCcEEEEECCHHHHHhh-hcCCCC
Q 028019 165 RLVVCAGNGAVQSSANLAL----LR-HGISLWIDVPPGMVARM-DHSGFP 208 (215)
Q Consensus 165 ~~VLa~G~g~Vl~~~~r~~----L~-~g~vV~Ld~p~e~l~eR-~~rg~~ 208 (215)
..||..| . -.....+. +. ...+||+++|.+++.+| ..|+.+
T Consensus 81 ~~vvidg--~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~ 127 (184)
T PRK01184 81 EVVVIDG--V-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRS 127 (184)
T ss_pred CcEEEeC--C-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCC
Confidence 2333222 1 12222322 22 34799999999999999 556543
No 54
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.18 E-value=3.8e-11 Score=91.69 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=32.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhH
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li 128 (215)
+|+|+|+|||||||+|+.||+++|+++++.|+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 5899999999999999999999999999999954
No 55
>PRK02496 adk adenylate kinase; Provisional
Probab=99.17 E-value=3.6e-10 Score=93.08 Aligned_cols=110 Identities=18% Similarity=0.174 Sum_probs=66.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhC-CCch----HHHHhhhhhHHHHHHHHHHHHH-HHc---CC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GESA----AKAFRESDEKGYQQAETEVLKQ-LSS---MG 164 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G-~~si----~e~~~~~ge~~fr~~e~~vL~~-L~~---~~ 164 (215)
++|+|+|+|||||||+++.||+.+|+++++.|+++.+... +... ..++ ..|.....+....++.. +.. ..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~g~~~~~~~~~~~l~~~l~~~~~~~ 80 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYM-DKGELVPDQLVLDLVQERLQQPDAAN 80 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHH-HCCCccCHHHHHHHHHHHHhCcCccC
Confidence 5799999999999999999999999999999988877541 1111 1111 12222222223333332 221 12
Q ss_pred CeEEEeCCceeechHHHH----hh-----cCCcEEEEECCHHHHHhh-hcCCC
Q 028019 165 RLVVCAGNGAVQSSANLA----LL-----RHGISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 165 ~~VLa~G~g~Vl~~~~r~----~L-----~~g~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
++||. | +.-+..... .+ ..+.+|||++|.+++.+| ..|+.
T Consensus 81 g~vld-G--fPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 130 (184)
T PRK02496 81 GWILD-G--FPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGR 130 (184)
T ss_pred CEEEe-C--CCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCC
Confidence 34443 2 211111111 11 146899999999999999 66654
No 56
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.16 E-value=2.1e-10 Score=99.17 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=64.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEE
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa 169 (215)
.|+|+|+|||||||+|+.|++.++ +.+++.|.+.+.. . .+...++..++..+..++...+..+..||.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~-~------~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~ 73 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESF-P------VWKEKYEEFIRDSTLYLIKTALKNKYSVIV 73 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHh-H------HhhHHhHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 389999999999999999999883 3456666655432 1 012223444555555556666655556665
Q ss_pred eCCceeechHHHH---hhc----CCcEEEEECCHHHHHhh-hcCC
Q 028019 170 AGNGAVQSSANLA---LLR----HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 170 ~G~g~Vl~~~~r~---~L~----~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
.+.. .......+ .++ ...+|||++|.+++.+| ..|+
T Consensus 74 D~~~-~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~ 117 (249)
T TIGR03574 74 DDTN-YYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERG 117 (249)
T ss_pred eccc-hHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCC
Confidence 5432 22221112 222 23789999999999999 4444
No 57
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.16 E-value=2.8e-10 Score=93.33 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=63.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCcee--ecchhHHHHhCCCchH--HH--Hhh--------hhhHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAGGESAA--KA--FRE--------SDEKGYQQAETEVL 157 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~l--d~D~li~~~~G~~si~--e~--~~~--------~ge~~fr~~e~~vL 157 (215)
+++.|+|+|+|||||||+|+.|++.++..++ +.|.++....+ .... +. +.. .....|... ...+
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~ 78 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPL-KCQDAEGGIEFDGDGGVSPGPEFRLLEGAW-YEAV 78 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcCh-hhcccccccccCccCCcccchHHHHHHHHH-HHHH
Confidence 4678999999999999999999999876654 78877665321 0000 00 000 001122222 2234
Q ss_pred HHHHcCCC-eEEEeCCceee-chHHHHhhc-----CCcEEEEECCHHHHHhh-hcCC
Q 028019 158 KQLSSMGR-LVVCAGNGAVQ-SSANLALLR-----HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 158 ~~L~~~~~-~VLa~G~g~Vl-~~~~r~~L~-----~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
..++.++. +|+.. .+. .+..++.++ .-..|||++|.+++.+| .+|+
T Consensus 79 ~~~l~~G~~VIvD~---~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 79 AAMARAGANVIADD---VFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred HHHHhCCCcEEEee---eccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 44555444 44432 122 233333222 23679999999999999 5565
No 58
>PLN02200 adenylate kinase family protein
Probab=99.16 E-value=3.3e-10 Score=98.12 Aligned_cols=111 Identities=10% Similarity=0.185 Sum_probs=65.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCc-----hHHHHhhhhhHHHHHHHHHHHH-HHHc--C
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLK-QLSS--M 163 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~s-----i~e~~~~~ge~~fr~~e~~vL~-~L~~--~ 163 (215)
.+..|+|+|+|||||||+|+.||+++|+.+++.++++.+.....+ +.+.+ ..|...-.+....++. .+.. .
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~-~~G~~vp~e~~~~~l~~~l~~~~~ 120 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTI-KEGKIVPSEVTVKLIQKEMESSDN 120 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHH-HcCCCCcHHHHHHHHHHHHhcCCC
Confidence 457889999999999999999999999999999888776432111 11111 1121111111122222 2221 1
Q ss_pred CCeEEEeCCceeechHHHHhh------cCCcEEEEECCHHHHHhh-hcCC
Q 028019 164 GRLVVCAGNGAVQSSANLALL------RHGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 164 ~~~VLa~G~g~Vl~~~~r~~L------~~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
.++||. |..-....+..+ ..+.+|||++|++++.+| ..|+
T Consensus 121 ~~~ILD---G~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~ 167 (234)
T PLN02200 121 NKFLID---GFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRN 167 (234)
T ss_pred CeEEec---CCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCc
Confidence 223442 222222222222 246899999999999999 5554
No 59
>PRK14528 adenylate kinase; Provisional
Probab=99.15 E-value=6.1e-10 Score=92.81 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=36.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
++|+|+|+|||||||+|+.||+.+|++++++|+++.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~ 40 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAV 40 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHh
Confidence 579999999999999999999999999999999987753
No 60
>PRK13975 thymidylate kinase; Provisional
Probab=99.12 E-value=1e-10 Score=96.69 Aligned_cols=108 Identities=21% Similarity=0.247 Sum_probs=61.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCC--ceeecchhHHH----HhCC-----CchHHHHhhhhhHHHHHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRY--YYFDSDSLVFE----AAGG-----ESAAKAFRESDEKGYQQAETEVLKQLS 161 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~--~~ld~D~li~~----~~G~-----~si~e~~~~~ge~~fr~~e~~vL~~L~ 161 (215)
++.|+|.|++||||||+++.|+++++. .+.+.|..+.+ .... ..+..+|...+++.+++++.. +.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~----~~ 77 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEED----LK 77 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHH----Hc
Confidence 467999999999999999999999994 34555543322 1110 112223444444444433222 22
Q ss_pred cCCCeEEEe-----------CCceeec---hHHHHhhcCCcEEEEECCHHHHHhh-hcCC
Q 028019 162 SMGRLVVCA-----------GNGAVQS---SANLALLRHGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 162 ~~~~~VLa~-----------G~g~Vl~---~~~r~~L~~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
. ..||.. ++|...+ ..++..+..+++|||++|++++.+| ..|+
T Consensus 78 -~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~ 135 (196)
T PRK13975 78 -K-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD 135 (196)
T ss_pred -C-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence 2 334432 2221110 1111122367999999999999999 6665
No 61
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.11 E-value=6e-11 Score=98.84 Aligned_cols=103 Identities=23% Similarity=0.300 Sum_probs=68.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhh--HHHHHHHHHH---HHHHHcCCCeEE
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE--KGYQQAETEV---LKQLSSMGRLVV 168 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge--~~fr~~e~~v---L~~L~~~~~~VL 168 (215)
+.|.|+|.||+||||+++.|+ .+|+.++++.+++.+. | . +..+++ ..+-.-...+ +..+......||
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~-~-~-----~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Iv 72 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN-G-L-----YTEYDELRKSVIVDVDKLRKRLEELLREGSGIV 72 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc-C-C-----eeccCCccceEEeeHHHHHHHHHHHhccCCeEe
Confidence 479999999999999999999 9999999999988764 2 1 111111 0000000111 122212233444
Q ss_pred EeCCceeechHHHHhhc-CCcEEEEECCHHHHHhh-hcCCCCCCCC
Q 028019 169 CAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPESEV 212 (215)
Q Consensus 169 a~G~g~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR-~~rg~~~~~~ 212 (215)
. ...-.++. .++||.|.++++++.+| ..|||++.+|
T Consensus 73 d--------~H~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI 110 (180)
T COG1936 73 D--------SHLSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKI 110 (180)
T ss_pred e--------chhhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHH
Confidence 2 22223445 68999999999999999 9999999876
No 62
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.11 E-value=5.7e-10 Score=91.24 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=62.2
Q ss_pred EccCCCcHHHHHHHHHHHhCCceeecchhHHHH------hCCCchHHHHhhhh-hHHHHHHHHHHHHHHHcCCCeEEEeC
Q 028019 99 VGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESD-EKGYQQAETEVLKQLSSMGRLVVCAG 171 (215)
Q Consensus 99 iG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~------~G~~si~e~~~~~g-e~~fr~~e~~vL~~L~~~~~~VLa~G 171 (215)
+|++||||||+++.|++.+|..+++.|.++... .| .. +...+ ..+....+..++..+......||.+.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~s 75 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG-EP----LNDDDRKPWLQALNDAAFAMQRTNKVSLIVCS 75 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCC-CC----CChhhHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 699999999999999999999999999864321 12 21 11112 22333333333333333334444432
Q ss_pred CceeechHHHHhhc----CCcEEEEECCHHHHHhh-hcCC
Q 028019 172 NGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 172 ~g~Vl~~~~r~~L~----~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
+ +....++.++ .-.+|||++|.+++.+| ..|+
T Consensus 76 --~-~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~ 112 (163)
T PRK11545 76 --A-LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARK 112 (163)
T ss_pred --c-chHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhcc
Confidence 2 3455566555 23679999999999999 4543
No 63
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.10 E-value=9.9e-10 Score=92.03 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=65.2
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHh-----CCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCC
Q 028019 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (215)
Q Consensus 90 ~l~~~~I~LiG~pGSGKSTlAk~LA~~L-----g~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~ 164 (215)
.-++..|+|+|++||||||+++.|+..+ +..++|.|++.+...+. +. +..+.....++.+.. +...+...+
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~--~~-~~~~~~~~~~~~l~~-~a~~~~~~G 96 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSD--LG-FSDADRKENIRRVGE-VAKLMVDAG 96 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhc--CC-cCcccHHHHHHHHHH-HHHHHhhCC
Confidence 3578899999999999999999999987 46789999887654321 10 011111222333221 223333344
Q ss_pred CeEEEeCCceeechHHHH----hhc-CCc-EEEEECCHHHHHhhh
Q 028019 165 RLVVCAGNGAVQSSANLA----LLR-HGI-SLWIDVPPGMVARMD 203 (215)
Q Consensus 165 ~~VLa~G~g~Vl~~~~r~----~L~-~g~-vV~Ld~p~e~l~eR~ 203 (215)
..||+.. .. .....|+ ++. .++ +|||++|++++.+|+
T Consensus 97 ~~VI~~~-~~-~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~ 139 (198)
T PRK03846 97 LVVLTAF-IS-PHRAERQMVRERLGEGEFIEVFVDTPLAICEARD 139 (198)
T ss_pred CEEEEEe-CC-CCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcC
Confidence 4454321 11 1223333 343 344 799999999999994
No 64
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.07 E-value=2.1e-09 Score=89.23 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=66.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHH------HhCCCchHHHHhhhhh-HHHHHHHHHHHHHHHc-C
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE------AAGGESAAKAFRESDE-KGYQQAETEVLKQLSS-M 163 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~------~~G~~si~e~~~~~ge-~~fr~~e~~vL~~L~~-~ 163 (215)
.+..++|+|++||||||+++.|+..++..+++.|++... ..| .. +..... .+.......++..+.. .
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g-~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQG-IP----LTDEDRLPWLERLNDASYSLYKKNE 76 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcC-CC----CCcccchHHHHHHHHHHHHHHhcCC
Confidence 567899999999999999999999999999999986432 112 11 111111 1222222232222121 2
Q ss_pred CCeEEEeCCceeechHHHHhhc----CCcEEEEECCHHHHHhh-hcCC
Q 028019 164 GRLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 164 ~~~VLa~G~g~Vl~~~~r~~L~----~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
..+|+ +. .+....++.++ .-.+|||++|++++.+| ..|+
T Consensus 77 ~g~iv-~s---~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~ 120 (176)
T PRK09825 77 TGFIV-CS---SLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRA 120 (176)
T ss_pred CEEEE-EE---ecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhccc
Confidence 33444 32 24555666665 22789999999999999 5553
No 65
>PLN02459 probable adenylate kinase
Probab=99.03 E-value=2.8e-09 Score=94.19 Aligned_cols=109 Identities=11% Similarity=0.066 Sum_probs=65.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhC-CCc----hHHHHhhhhhHHHHHHHHHHH-HHHHcCCCeE
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GES----AAKAFRESDEKGYQQAETEVL-KQLSSMGRLV 167 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G-~~s----i~e~~~~~ge~~fr~~e~~vL-~~L~~~~~~V 167 (215)
.+|+|+|+|||||||+|+.||+.+|+.++++++++.+... +.. +.+++ ..|...-.++-..++ .+|.....
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~-~~G~lVPdeiv~~ll~~~l~~~~~-- 106 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIV-NQGKLVPDEIIFSLLSKRLEAGEE-- 106 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHH-HcCCccCHHHHHHHHHHHHhcccc--
Confidence 5799999999999999999999999999999998876532 011 22222 123221112212222 22322100
Q ss_pred EEeCCceeech--H---HHHhhc----CCcEEEEECCHHHHHhh-hcCC
Q 028019 168 VCAGNGAVQSS--A---NLALLR----HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 168 La~G~g~Vl~~--~---~r~~L~----~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
....|++++. . ..+.|. .+.||+|++|.+++.+| ..|.
T Consensus 107 -~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 107 -EGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred -cCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccc
Confidence 1123445442 2 222332 46899999999999999 5553
No 66
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.03 E-value=1.7e-09 Score=87.08 Aligned_cols=106 Identities=21% Similarity=0.312 Sum_probs=61.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh---C--CceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEE
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa 169 (215)
.|+|+|.|||||||+++.|++.+ | +.+++.|.+.....+... +......+.++.... ....+..++..||.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~---~~~~~~~~~~~~~~~-~a~~l~~~G~~VIi 76 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLG---FSREDREENIRRIAE-VAKLLADAGLIVIA 76 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccC---CCcchHHHHHHHHHH-HHHHHHhCCCEEEE
Confidence 37899999999999999999998 5 456788887764432111 001111222332221 23334444444443
Q ss_pred eCCceeechHHHHhhc------CCcEEEEECCHHHHHhhhcCC
Q 028019 170 AGNGAVQSSANLALLR------HGISLWIDVPPGMVARMDHSG 206 (215)
Q Consensus 170 ~G~g~Vl~~~~r~~L~------~g~vV~Ld~p~e~l~eR~~rg 206 (215)
.. . ......|..++ ...+|||++|.+++.+|+.+|
T Consensus 77 d~-~-~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~~ 117 (149)
T cd02027 77 AF-I-SPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPKG 117 (149)
T ss_pred cc-C-CCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCchh
Confidence 21 2 22334444322 236799999999999996554
No 67
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.03 E-value=3.5e-09 Score=87.31 Aligned_cols=108 Identities=20% Similarity=0.319 Sum_probs=66.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh-----CCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L-----g~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~ 165 (215)
-++..|+|+|++||||||+++.|+..+ +..+++.|.+...+.++... -.......++.+. .+...+...+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~G~ 91 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGF---SEEDRKENIRRIG-EVAKLFVRNGI 91 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCC---CHHHHHHHHHHHH-HHHHHHHcCCC
Confidence 467899999999999999999999987 25688999887655431110 0111122233322 22334444555
Q ss_pred eEEEeCCceeechHHHHhhc----C--CcEEEEECCHHHHHhhhc
Q 028019 166 LVVCAGNGAVQSSANLALLR----H--GISLWIDVPPGMVARMDH 204 (215)
Q Consensus 166 ~VLa~G~g~Vl~~~~r~~L~----~--g~vV~Ld~p~e~l~eR~~ 204 (215)
.||... .......++.++ . .++|||++|.+++.+|+.
T Consensus 92 ~VI~d~--~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~ 134 (184)
T TIGR00455 92 IVITSF--ISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDP 134 (184)
T ss_pred EEEEec--CCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCc
Confidence 555432 223344444432 2 367999999999999954
No 68
>PRK04040 adenylate kinase; Provisional
Probab=99.02 E-value=2.8e-09 Score=89.45 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=64.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh--CCceeecchhHHHHhC--CCc-hHHHHhhhhhH---HHHHHHHHHHHHHHcCC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAG--GES-AAKAFRESDEK---GYQQAETEVLKQLSSMG 164 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L--g~~~ld~D~li~~~~G--~~s-i~e~~~~~ge~---~fr~~e~~vL~~L~~~~ 164 (215)
++.|+|+|+|||||||+++.|++++ ++.+++.|+++.+... +.. -.+-+...... .++....+.+.++....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~ 81 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEG 81 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCC
Confidence 5789999999999999999999999 8999999998766431 110 01111111111 12222222223333223
Q ss_pred CeEEEeCCceeech---------HHHHhhcCCcEEEEECCHHHHHhh
Q 028019 165 RLVVCAGNGAVQSS---------ANLALLRHGISLWIDVPPGMVARM 202 (215)
Q Consensus 165 ~~VLa~G~g~Vl~~---------~~r~~L~~g~vV~Ld~p~e~l~eR 202 (215)
..||... .++.++ ...+.+..+.+|+|++|++++.+|
T Consensus 82 ~~~~~~h-~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~R 127 (188)
T PRK04040 82 PVIVDTH-ATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMR 127 (188)
T ss_pred CEEEeee-eeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHH
Confidence 3555431 222211 122333467899999999999988
No 69
>PRK14526 adenylate kinase; Provisional
Probab=99.00 E-value=4.6e-09 Score=89.80 Aligned_cols=107 Identities=9% Similarity=0.156 Sum_probs=63.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCC-----CchHHHHhhhhhHHHHHHHHHHH-HHHHcCCCeEE
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVL-KQLSSMGRLVV 168 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~-----~si~e~~~~~ge~~fr~~e~~vL-~~L~~~~~~VL 168 (215)
+|+|+|+|||||||+++.||+.+++.++++++++.+.... ..+.++++ .|.....+.-..++ ..+...
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~-~g~lvpd~~~~~lv~~~l~~~----- 75 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVE-NGQLVPDSITIKIVEDKINTI----- 75 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHH-cCccCChHHHHHHHHHHHhcc-----
Confidence 5899999999999999999999999999999998764320 12333332 22211112212222 222221
Q ss_pred EeCCceeech-----HHHHhhc----CCcEEEEECCHHHHHhh-hcCCC
Q 028019 169 CAGNGAVQSS-----ANLALLR----HGISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 169 a~G~g~Vl~~-----~~r~~L~----~g~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
.+..|++++. ...+.|. ...+|+|++|.+++.+| ..|..
T Consensus 76 ~~~~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 124 (211)
T PRK14526 76 KNNDNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRI 124 (211)
T ss_pred cccCcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCc
Confidence 1123344432 2222332 23678899999999999 55543
No 70
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.00 E-value=1.9e-09 Score=86.14 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=57.5
Q ss_pred EEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCC-c----hHHHHhhhhhHHHHHHHHHHH-HHHHc---CCCeEE
Q 028019 98 LVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-S----AAKAFRESDEKGYQQAETEVL-KQLSS---MGRLVV 168 (215)
Q Consensus 98 LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~-s----i~e~~~~~ge~~fr~~e~~vL-~~L~~---~~~~VL 168 (215)
|+|+|||||+|+|+.||+++|+.+++.++++.+..... . +.+.++ .|...-.++-.+++ ..+.. ..++||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~-~g~~vp~~~v~~ll~~~l~~~~~~~g~il 79 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLD-NGELVPDELVIELLKERLEQPPCNRGFIL 79 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHH-TTSS--HHHHHHHHHHHHHSGGTTTEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHH-hhccchHHHHHHHHHHHHhhhcccceeee
Confidence 68999999999999999999999999999888764211 1 112222 12221122222222 22332 223444
Q ss_pred EeCCceeechHHHHhh---------cCCcEEEEECCHHHHHhh
Q 028019 169 CAGNGAVQSSANLALL---------RHGISLWIDVPPGMVARM 202 (215)
Q Consensus 169 a~G~g~Vl~~~~r~~L---------~~g~vV~Ld~p~e~l~eR 202 (215)
. |+.-+....+.| ....+|+|++|.+++.+|
T Consensus 80 d---GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R 119 (151)
T PF00406_consen 80 D---GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIER 119 (151)
T ss_dssp E---SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHH
T ss_pred e---eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhh
Confidence 2 332222222211 135899999999999999
No 71
>PRK14529 adenylate kinase; Provisional
Probab=98.99 E-value=3.6e-09 Score=91.43 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=65.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhC-CCc----hHHHHhhhhhHHHHHHHHHHHH-HHHcCCCeEE
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GES----AAKAFRESDEKGYQQAETEVLK-QLSSMGRLVV 168 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G-~~s----i~e~~~~~ge~~fr~~e~~vL~-~L~~~~~~VL 168 (215)
+|+|+|+|||||||+|+.||+.++++++++.+++.+... +.. +.++. ..|.....++-..++. .+....
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~l~~~~---- 76 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILETLKQDG---- 76 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHHHhccC----
Confidence 699999999999999999999999999999888877532 112 22222 2233323333333332 332211
Q ss_pred EeCCceeech-----HHHH----hh-----cCCcEEEEECCHHHHHhh-hcCC
Q 028019 169 CAGNGAVQSS-----ANLA----LL-----RHGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 169 a~G~g~Vl~~-----~~r~----~L-----~~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
..|++++. ...+ .+ ..+.+|+|++|.+++.+| ..|.
T Consensus 77 --~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 127 (223)
T PRK14529 77 --KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR 127 (223)
T ss_pred --CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence 23444432 1111 12 145899999999999999 5553
No 72
>COG0645 Predicted kinase [General function prediction only]
Probab=98.99 E-value=5.9e-10 Score=92.47 Aligned_cols=103 Identities=19% Similarity=0.166 Sum_probs=65.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHH-------c-CCC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLS-------S-MGR 165 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~-------~-~~~ 165 (215)
+.+++.|.||+||||+|+.|++.+|+..+.+|.+.+.+.| .+..+ ......+.......++..+. . ...
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g-~p~~~--r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~ 78 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG-VPEET--RGPAGLYSPAATAAVYDELLGRAELLLSSGHS 78 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC-Ccccc--cCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4678999999999999999999999999999999998877 22110 00011112233333333332 2 222
Q ss_pred eEEEeCCceeechHHHHhhc-----C---CcEEEEECCHHHHHhh
Q 028019 166 LVVCAGNGAVQSSANLALLR-----H---GISLWIDVPPGMVARM 202 (215)
Q Consensus 166 ~VLa~G~g~Vl~~~~r~~L~-----~---g~vV~Ld~p~e~l~eR 202 (215)
.|+. +.+.++..|+..+ . ...|++.+|.+++.+|
T Consensus 79 VVlD---a~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~r 120 (170)
T COG0645 79 VVLD---ATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGR 120 (170)
T ss_pred EEEe---cccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHH
Confidence 3332 2344455555432 2 2569999999999999
No 73
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.99 E-value=1e-09 Score=89.74 Aligned_cols=112 Identities=20% Similarity=0.170 Sum_probs=60.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCc----eeecchhHHHHhCC-----CchHHHHhhhhhHH----------HHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYY----YFDSDSLVFEAAGG-----ESAAKAFRESDEKG----------YQQAET 154 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~----~ld~D~li~~~~G~-----~si~e~~~~~ge~~----------fr~~e~ 154 (215)
..|+|+|+|||||||+++.|+..++.. ++..+.-.....++ .+..++....+... +....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 80 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP- 80 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh-
Confidence 578999999999999999999987632 22111000000000 11112211111100 00011
Q ss_pred HHHHHHHcCCCeEEEeCCceeechHHHHhhcCCcEEEEECCHHHHHhh-hcCCC
Q 028019 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 155 ~vL~~L~~~~~~VLa~G~g~Vl~~~~r~~L~~g~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
..+......+..||.++++... ...++.+....+|||++|.+++.+| ..|+.
T Consensus 81 ~~i~~~~~~g~~vv~~g~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 133 (179)
T TIGR02322 81 AEIDQWLEAGDVVVVNGSRAVL-PEARQRYPNLLVVNITASPDVLAQRLAARGR 133 (179)
T ss_pred HHHHHHHhcCCEEEEECCHHHH-HHHHHHCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 1123333344567777765433 3344444466899999999999999 55544
No 74
>PRK08233 hypothetical protein; Provisional
Probab=98.97 E-value=3.9e-09 Score=85.67 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=58.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-CceeecchhHHHHhCCCchHHHHhh-hhhH--HHHHHHHHHHHHHHcCC--C
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSLVFEAAGGESAAKAFRE-SDEK--GYQQAETEVLKQLSSMG--R 165 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-~~~ld~D~li~~~~G~~si~e~~~~-~ge~--~fr~~e~~vL~~L~~~~--~ 165 (215)
++..|+|.|+|||||||+|+.|+++++ ...+..|.+...... ..+.+.... ..+. ..... ...+..+.... .
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 79 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCP-EDICKWIDKGANYSEWVLTPL-IKDIQELIAKSNVD 79 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCc-hhhhhhhhccCChhhhhhHHH-HHHHHHHHcCCCce
Confidence 457889999999999999999999996 445555555332111 111111110 0000 01111 11233333333 3
Q ss_pred eEEEeCCceeechHHHHhhcCCcEEEEECCHHHHHhh-hcCC
Q 028019 166 LVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 166 ~VLa~G~g~Vl~~~~r~~L~~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
+||..+......+..+.. .+++|||++|.+++.+| .+|.
T Consensus 80 ~vivd~~~~~~~~~~~~~--~d~~i~l~~~~~~~~~R~~~R~ 119 (182)
T PRK08233 80 YIIVDYPFAYLNSEMRQF--IDVTIFIDTPLDIAMARRILRD 119 (182)
T ss_pred EEEEeeehhhccHHHHHH--cCEEEEEcCCHHHHHHHHHHHH
Confidence 455332111111121111 57999999999998887 4443
No 75
>PLN02165 adenylate isopentenyltransferase
Probab=98.93 E-value=3.8e-09 Score=96.24 Aligned_cols=113 Identities=17% Similarity=0.261 Sum_probs=74.8
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh--------------HHHHhCCCc---hHHHHhhh---hhHH
Q 028019 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--------------VFEAAGGES---AAKAFRES---DEKG 148 (215)
Q Consensus 89 ~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l--------------i~~~~G~~s---i~e~~~~~---ge~~ 148 (215)
..-++..|+|+||+|||||++|..||+.++..+++.|.+ .++..| .. +..+.... ....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~g-v~Hhli~~~~~~~~~~sv~~ 117 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRG-VPHHLLGELNPDDGELTASE 117 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcC-CChhhhheeccccceeeHHH
Confidence 334677899999999999999999999999999999987 344433 22 11111111 1246
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeCCceee---------chHHH---------H-hhc-CCcEEEEECCHHHHHhh
Q 028019 149 YQQAETEVLKQLSSMGRLVVCAGNGAVQ---------SSANL---------A-LLR-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 149 fr~~e~~vL~~L~~~~~~VLa~G~g~Vl---------~~~~r---------~-~L~-~g~vV~Ld~p~e~l~eR 202 (215)
|++....++..+...+...|.+||+..+ +++.. . .++ ..+++||+.|.+++.+|
T Consensus 118 F~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~R 191 (334)
T PLN02165 118 FRSLASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEY 191 (334)
T ss_pred HHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHH
Confidence 7766677777877666666667765321 11110 0 012 23578999999999998
No 76
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.90 E-value=2.4e-08 Score=85.65 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=34.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~ 130 (215)
+..|.|.|++||||||+++.||+++|+.+++.+.++..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~ 39 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRA 39 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHH
Confidence 35799999999999999999999999999999987644
No 77
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.90 E-value=7.2e-09 Score=86.52 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=36.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
++|+|+|+|||||||+|+.||++++++++|+|++++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~ 39 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI 39 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh
Confidence 479999999999999999999999999999999888754
No 78
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.90 E-value=8.3e-09 Score=86.53 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=35.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
+..|.|+|++||||||+++.|++ +|++++|+|.+.++.+
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~ 40 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVV 40 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHh
Confidence 35799999999999999999998 9999999999988875
No 79
>PRK08356 hypothetical protein; Provisional
Probab=98.89 E-value=2e-08 Score=83.88 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=30.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li 128 (215)
.+.|+|+|+|||||||+|+.|+ ++|+.+++..+..
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~ 39 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPL 39 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcc
Confidence 3578999999999999999996 5899999988754
No 80
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.87 E-value=2e-08 Score=85.72 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=39.0
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG 133 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G 133 (215)
..+..|.|+|.+||||||+++.|++.+|++++|.|.+..+.+.
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~ 46 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITK 46 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHC
Confidence 3567899999999999999999999999999999999888764
No 81
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.85 E-value=1.6e-08 Score=85.24 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=36.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
+.|.|+|++||||||+++.|++.+|++++|.|++..+.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~ 40 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREAL 40 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHH
Confidence 469999999999999999999999999999999988765
No 82
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.84 E-value=1.6e-08 Score=98.67 Aligned_cols=111 Identities=16% Similarity=0.292 Sum_probs=69.3
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh-----CCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L-----g~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~ 165 (215)
-++..|+++|+|||||||+|+.|+++| ++.+++.|.++....++.. +-.+..+..++..- .+...+...+.
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~---~~~~~r~~~~~~l~-~~a~~~~~~G~ 533 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLG---FSDADRVENIRRVA-EVARLMADAGL 533 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCC---CCHHHHHHHHHHHH-HHHHHHHhCCC
Confidence 468999999999999999999999998 4578999998875543111 11112233344432 22223333343
Q ss_pred eEEEeCCceeechHHHHhhc-----CC-cEEEEECCHHHHHhhhcCCC
Q 028019 166 LVVCAGNGAVQSSANLALLR-----HG-ISLWIDVPPGMVARMDHSGF 207 (215)
Q Consensus 166 ~VLa~G~g~Vl~~~~r~~L~-----~g-~vV~Ld~p~e~l~eR~~rg~ 207 (215)
.|+.. . .......|+.++ .. .+|||++|.+++.+|+.|++
T Consensus 534 ~Vivd-a-~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L 579 (632)
T PRK05506 534 IVLVS-F-ISPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGL 579 (632)
T ss_pred EEEEE-C-CCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcch
Confidence 44432 1 223344444433 23 78999999999999965554
No 83
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.83 E-value=3.6e-08 Score=81.75 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=34.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
.|.|+|.+||||||+++.|++..|++++|+|.+..+.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~ 38 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVV 38 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHH
Confidence 38899999999999999999987799999999987765
No 84
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.82 E-value=1.8e-08 Score=83.05 Aligned_cols=109 Identities=25% Similarity=0.397 Sum_probs=68.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhHHHHhCCCchHHHHhhhhh-HHHHHHHHHHHHHHHcCCC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDE-KGYQQAETEVLKQLSSMGR 165 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li~~~~G~~si~e~~~~~ge-~~fr~~e~~vL~~L~~~~~ 165 (215)
++-.|||+|.+||||||+|-.|.+.|- ...+|.|+++.-... .+ .|..++. +..|+ -.+| .+|... .
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~--DL--~F~a~dR~ENIRR-igeV-aKLFAD-a 102 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK--DL--GFKAEDRNENIRR-IGEV-AKLFAD-A 102 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc--cc--CcchhhhhhhHHH-HHHH-HHHHhc-c
Confidence 788999999999999999999999883 346899998765432 11 1332222 22332 2333 333322 3
Q ss_pred eEEEeCCceee-----chHHHHhhcC-C-cEEEEECCHHHHHhhhcCCCC
Q 028019 166 LVVCAGNGAVQ-----SSANLALLRH-G-ISLWIDVPPGMVARMDHSGFP 208 (215)
Q Consensus 166 ~VLa~G~g~Vl-----~~~~r~~L~~-g-~vV~Ld~p~e~l~eR~~rg~~ 208 (215)
.||+- .+.+. +...|++++. + +-||+++|.+++.+|+.+|..
T Consensus 103 g~ici-aSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKGLY 151 (207)
T KOG0635|consen 103 GVICI-ASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKGLY 151 (207)
T ss_pred ceeee-ehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchhHH
Confidence 34432 12221 2234555653 3 569999999999999766653
No 85
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.82 E-value=3.7e-08 Score=84.89 Aligned_cols=102 Identities=20% Similarity=0.289 Sum_probs=55.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhC---Cce--eecch---hHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALR---YYY--FDSDS---LVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg---~~~--ld~D~---li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~ 165 (215)
+.|+++|+|||||||+|+.||+.|. +.. +..|. +++. ++.+ +.++...+.|.+.-.+.+....+ .-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~D----Eslp-i~ke~yres~~ks~~rlldSalk-n~ 75 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWD----ESLP-ILKEVYRESFLKSVERLLDSALK-NY 75 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecc----cccc-hHHHHHHHHHHHHHHHHHHHHhc-ce
Confidence 5799999999999999999999983 443 33332 2222 1211 12222222222222222332222 33
Q ss_pred eEEEeCCceeechHHHHhh------c-CCcEEEEECCHHHHHhh
Q 028019 166 LVVCAGNGAVQSSANLALL------R-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 166 ~VLa~G~g~Vl~~~~r~~L------~-~g~vV~Ld~p~e~l~eR 202 (215)
+||+.. -.....-.+++. . ...+||+.+|+|+|.+|
T Consensus 76 ~VIvDd-tNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rr 118 (261)
T COG4088 76 LVIVDD-TNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRR 118 (261)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHh
Confidence 555421 111222222321 1 35899999999999999
No 86
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.81 E-value=2.1e-08 Score=82.79 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=34.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
.|.|+|.+||||||+++.|++ +|++++|+|++.++.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~ 37 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVY 37 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhh
Confidence 388999999999999999999 9999999999988764
No 87
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.81 E-value=6.3e-08 Score=83.32 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=35.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~ 130 (215)
.+..|.|.|++||||||+|+.||+++|+++++.|.++..
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 457899999999999999999999999999999997655
No 88
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.80 E-value=3.1e-08 Score=83.77 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=33.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
..|.|+|.+||||||+++.|++ +|++++|.|++..+.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~ 39 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIV 39 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHH
Confidence 4689999999999999999987 8999999998766654
No 89
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.80 E-value=7.4e-09 Score=96.13 Aligned_cols=38 Identities=29% Similarity=0.213 Sum_probs=35.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
..|.|+|.+||||||+++.|++ +|++++|+|.+..+.+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~ 39 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVV 39 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHh
Confidence 4699999999999999999987 8999999999988865
No 90
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.79 E-value=5.6e-08 Score=79.26 Aligned_cols=31 Identities=29% Similarity=0.331 Sum_probs=26.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh---CCceeec
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDS 124 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~L---g~~~ld~ 124 (215)
+.|+|.|++||||||+++.|++++ |+.++..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 368999999999999999999999 6665544
No 91
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.79 E-value=4.4e-08 Score=82.52 Aligned_cols=113 Identities=12% Similarity=0.209 Sum_probs=69.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCC--C----chHHHHhhhhhHHHHHHHHHHHH-HHHcC-
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--E----SAAKAFRESDEKGYQQAETEVLK-QLSSM- 163 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~--~----si~e~~~~~ge~~fr~~e~~vL~-~L~~~- 163 (215)
+++.||++|.|||||-|.+..+++.+||.++++++++.+.... . -+.++.. .|.....++-..+|. .|.+.
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~-~G~iVP~ei~~~LL~~am~~~~ 85 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIK-NGDLVPVEITLSLLEEAMRSSG 85 (195)
T ss_pred CCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHH-cCCcCcHHHHHHHHHHHHHhcC
Confidence 6789999999999999999999999999999999998876531 0 1122221 122111122122222 22221
Q ss_pred -CC-eEEEeCCceeechHHHHhh----c--CCcEEEEECCHHHHHhh-hcCCCC
Q 028019 164 -GR-LVVCAGNGAVQSSANLALL----R--HGISLWIDVPPGMVARM-DHSGFP 208 (215)
Q Consensus 164 -~~-~VLa~G~g~Vl~~~~r~~L----~--~g~vV~Ld~p~e~l~eR-~~rg~~ 208 (215)
.+ .+| .|..-+..++..+ + ..+++|++|+.|++.+| .+||-.
T Consensus 86 ~~~~fLI---DGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 86 DSNGFLI---DGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred CCCeEEe---cCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhccc
Confidence 12 233 1332233343333 2 36999999999999999 566554
No 92
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.78 E-value=1.4e-08 Score=77.31 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=21.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 028019 96 VFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~L 117 (215)
|+|.|+|||||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 93
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.75 E-value=1.3e-09 Score=106.95 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=65.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchH-HHHhhhhhHHHHHHHHHHHHHHHc-CCCeEEE
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA-KAFRESDEKGYQQAETEVLKQLSS-MGRLVVC 169 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~-e~~~~~ge~~fr~~e~~vL~~L~~-~~~~VLa 169 (215)
....|+++|+||+||||+|+.|++.|+|.++++|.+....++ ..+. +.+...++..++..|.++...++. ...+++.
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~r-r~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~ 292 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYR-RRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICK 292 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhH-hhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999999999999999988887766554 3332 234445666677777777766664 3456777
Q ss_pred eCCceeechHH
Q 028019 170 AGNGAVQSSAN 180 (215)
Q Consensus 170 ~G~g~Vl~~~~ 180 (215)
+|+++|++..|
T Consensus 293 ~GgvaI~DatN 303 (664)
T PTZ00322 293 TDGVAVLDGTN 303 (664)
T ss_pred CCCEEEEeCCC
Confidence 88888887644
No 94
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.75 E-value=1e-07 Score=80.73 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=32.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCcee-ecchhHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFEA 131 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~l-d~D~li~~~ 131 (215)
.++.|+++|+||+||||+|+.||+++|+.++ .+|.+.+.+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~ 42 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFL 42 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHH
Confidence 4678999999999999999999999999865 455444443
No 95
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.73 E-value=1.2e-07 Score=90.81 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=37.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~ 131 (215)
++..|.|.|++||||||+++.||++||+.++|+|.++...
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 6788999999999999999999999999999999988764
No 96
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.72 E-value=5.3e-08 Score=82.03 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=33.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh-CCceeecchhHHHH
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEA 131 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L-g~~~ld~D~li~~~ 131 (215)
.|.|.|.+||||||+|+.|++.+ +..+++.|+++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~ 38 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPE 38 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCc
Confidence 37899999999999999999999 69999999987643
No 97
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.70 E-value=8.8e-08 Score=92.08 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=64.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEe
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~ 170 (215)
-++..|+++|+|||||||+|+.+++.+|+.+++.|.+-. +......+...|......||..
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~-------------------~~~~~~~a~~~L~~G~sVVIDa 427 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS-------------------TQNCLTACERALDQGKRCAIDN 427 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH-------------------HHHHHHHHHHHHhCCCcEEEEC
Confidence 367889999999999999999999999999999997511 1112223334444445566642
Q ss_pred CCceeechHHHHhh----c-CC---cEEEEECCHHHHHhh-hcCCC
Q 028019 171 GNGAVQSSANLALL----R-HG---ISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 171 G~g~Vl~~~~r~~L----~-~g---~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
.-.++..|+.+ + .+ .+||+++|.+++.+| ..|..
T Consensus 428 ---Tn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 428 ---TNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 22344444422 2 22 579999999999999 45554
No 98
>PLN02422 dephospho-CoA kinase
Probab=98.70 E-value=1.2e-07 Score=82.43 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=34.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
+.|.|+|.+||||||+++.|+ ++|++++|.|++..+.+
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~ 39 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVL 39 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHH
Confidence 368999999999999999998 58999999999987764
No 99
>PLN02842 nucleotide kinase
Probab=98.68 E-value=9.6e-08 Score=91.25 Aligned_cols=106 Identities=16% Similarity=0.159 Sum_probs=61.2
Q ss_pred EEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh-CCC----chHHHHhhhhhHHHHHHHHHHHH-HHHc----CCCe
Q 028019 97 FLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGE----SAAKAFRESDEKGYQQAETEVLK-QLSS----MGRL 166 (215)
Q Consensus 97 ~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~-G~~----si~e~~~~~ge~~fr~~e~~vL~-~L~~----~~~~ 166 (215)
+|+|+|||||||+++.||+.+++.++++++++.... ++. .+.+++. .|.....+.-..++. .+.. ...+
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~-~G~lvPdeiv~~ll~drl~~~~~~~~G~ 79 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMN-SGRLVPDEIVIAMVTGRLSREDAKEKGW 79 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHhCccccCCcE
Confidence 479999999999999999999999999998876542 211 2223332 121111111111122 2211 1234
Q ss_pred EEEeCCceeechHHHHhh-----cCCcEEEEECCHHHHHhh-hcCC
Q 028019 167 VVCAGNGAVQSSANLALL-----RHGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 167 VLa~G~g~Vl~~~~r~~L-----~~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
||. |..-+....+.| ..+++|||++|.+++.+| .+|.
T Consensus 80 ILD---GfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 80 LLD---GYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred EEe---CCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence 442 221111222223 256899999999999999 5554
No 100
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.66 E-value=3e-08 Score=88.59 Aligned_cols=42 Identities=26% Similarity=0.369 Sum_probs=36.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCce---eecchhHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYY---FDSDSLVFEAAG 133 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~---ld~D~li~~~~G 133 (215)
+.+.|++-|+.|||||++||.||++||+.+ +++|.+....+|
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg 114 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYG 114 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccC
Confidence 778899999999999999999999999776 478888777665
No 101
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=7.6e-08 Score=93.27 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=91.2
Q ss_pred eecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc--hhHHH
Q 028019 56 TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD--SLVFE 130 (215)
Q Consensus 56 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D--~li~~ 130 (215)
++|++++.+ .+..+..+-+-++. .++-+++..+ +++-++|+||||||||.+|+.+|.++|++|+... +++..
T Consensus 186 nv~f~diGG--~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 186 NVSFSDIGG--LDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CcchhhccC--hHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 567888776 55555555555555 7778888875 8899999999999999999999999999998654 34443
Q ss_pred HhCCCc---hHHHHhhh-------------------hhHHHHHHHHHHHHHHHc-CC----------Ce-EE-EeCCcee
Q 028019 131 AAGGES---AAKAFRES-------------------DEKGYQQAETEVLKQLSS-MG----------RL-VV-CAGNGAV 175 (215)
Q Consensus 131 ~~G~~s---i~e~~~~~-------------------ge~~fr~~e~~vL~~L~~-~~----------~~-VL-a~G~g~V 175 (215)
..| .+ +.+.|++. .+.+-+++|.+++.+|+. ++ .+ || ++..--.
T Consensus 263 vSG-ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 263 VSG-ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred cCc-ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc
Confidence 333 22 34444321 134567889999888874 21 11 22 1111112
Q ss_pred echHHHHhhcCCcEEEEECCHHHHHhh
Q 028019 176 QSSANLALLRHGISLWIDVPPGMVARM 202 (215)
Q Consensus 176 l~~~~r~~L~~g~vV~Ld~p~e~l~eR 202 (215)
+++.-|..=+.+.-|-|.+|.++-.++
T Consensus 342 lDpaLRRaGRFdrEI~l~vP~e~aR~~ 368 (802)
T KOG0733|consen 342 LDPALRRAGRFDREICLGVPSETAREE 368 (802)
T ss_pred cCHHHhccccccceeeecCCchHHHHH
Confidence 222222211234678999998876555
No 102
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.64 E-value=2.2e-07 Score=78.04 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=33.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC---CceeecchhHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLVFE 130 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg---~~~ld~D~li~~ 130 (215)
++..|.|+|++||||||+++.|++.++ +.+++.|+++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~ 46 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKD 46 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccC
Confidence 567899999999999999999999983 557899987653
No 103
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.63 E-value=3e-08 Score=85.36 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=34.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~ 131 (215)
..|.|=||+||||||+|+.||++||+.|+|+..++...
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 67889999999999999999999999999999887664
No 104
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.60 E-value=2.6e-07 Score=76.90 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=31.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh---CCceeecchhHHH
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFE 130 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L---g~~~ld~D~li~~ 130 (215)
.|.|+|++||||||+++.|+..+ +..+++.|+++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~ 39 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKD 39 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccc
Confidence 37899999999999999999988 3678999987754
No 105
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.60 E-value=2.2e-07 Score=80.20 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=32.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCc---eeecchhHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYY---YFDSDSLVFEA 131 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~---~ld~D~li~~~ 131 (215)
..|-|.|.+||||||+++.|++.++-. .++.|+++...
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~ 49 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQ 49 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccch
Confidence 567788999999999999999999954 78889988753
No 106
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.60 E-value=1.7e-07 Score=83.04 Aligned_cols=105 Identities=18% Similarity=0.165 Sum_probs=53.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhC---C--ceeecchhHHHHhCCCchHHHHhhhhhHHHHH-HHHHHHHHHHcCCCeE
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALR---Y--YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQ-AETEVLKQLSSMGRLV 167 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg---~--~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~-~e~~vL~~L~~~~~~V 167 (215)
+.|+|+|.|||||||+|+.|++.+. + .+++-|.+..+. .. +.+...|...|. +...+...+ .....|
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~----~~--y~~~~~Ek~~R~~l~s~v~r~l-s~~~iV 74 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDR----ND--YADSKKEKEARGSLKSAVERAL-SKDTIV 74 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TT----SS--S--GGGHHHHHHHHHHHHHHHH-TT-SEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccch----hh--hhchhhhHHHHHHHHHHHHHhh-ccCeEE
Confidence 5799999999999999999999862 3 345544444111 11 112223333342 333333333 344555
Q ss_pred EEeCCceeechHHHHhhc-------CCcEEEEECCHHHHHhh-hcCC
Q 028019 168 VCAGNGAVQSSANLALLR-------HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 168 La~G~g~Vl~~~~r~~L~-------~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
|. .+..-+.....++.+ ...+||+++|.+.+.+| .+|+
T Consensus 75 I~-Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~ 120 (270)
T PF08433_consen 75 IL-DDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRP 120 (270)
T ss_dssp EE--S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT
T ss_pred EE-eCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccC
Confidence 53 334444443344332 23789999999999999 4444
No 107
>PRK06696 uridine kinase; Validated
Probab=98.60 E-value=3.9e-07 Score=77.76 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=32.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCce--eecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYY--FDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~~--ld~D~li~ 129 (215)
.+..|.|.|++||||||+|+.|++.| |.++ +++|+++.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 56788899999999999999999999 6555 45888764
No 108
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=7e-08 Score=93.84 Aligned_cols=75 Identities=19% Similarity=0.090 Sum_probs=66.7
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeec--chhHHHH
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEA 131 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~--D~li~~~ 131 (215)
++|+|+++ ++.+-..+.+++..+.++-+.+..+ +++.|++.||||||||++||.+|..-++.|+.. -+++...
T Consensus 431 v~W~dIGG--lE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~ 508 (693)
T KOG0730|consen 431 VSWDDIGG--LEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKY 508 (693)
T ss_pred CChhhccC--HHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHh
Confidence 89999998 8888888899999999999999996 789999999999999999999999999998766 4566665
Q ss_pred hC
Q 028019 132 AG 133 (215)
Q Consensus 132 ~G 133 (215)
+|
T Consensus 509 vG 510 (693)
T KOG0730|consen 509 VG 510 (693)
T ss_pred cC
Confidence 55
No 109
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.57 E-value=1e-06 Score=74.67 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=34.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
+..|.|+|.+||||||+++.|++ +|++++|.|.+..+.+
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~ 43 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQ 43 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHc
Confidence 35688999999999999999987 8999999998776654
No 110
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.4e-08 Score=91.66 Aligned_cols=93 Identities=18% Similarity=0.152 Sum_probs=75.8
Q ss_pred ccccccee-eeccC---CceeeecccCCCCccccccccCCCchhhHHHHHHhHhhc---c-CCcEEEEEccCCCcHHHHH
Q 028019 39 IRTSLQYS-IISRK---PRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTE---L-KGTSVFLVGMNNAIKTHLG 110 (215)
Q Consensus 39 ~~~~~~~~-~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~~~~I~LiG~pGSGKSTlA 110 (215)
+.+...|. ++.+. |.+|.++|.|+++ ++.+.+.+-|.+++|.|..+++.. + +++.|+|.||||+|||-+|
T Consensus 67 ~i~~ne~E~~i~s~~v~p~~I~v~f~DIgg--Le~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 67 IIQKNEYEKRIASDVVPPSEIGVSFDDIGG--LEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred hhhhhHHHHHhhhcccchhhceeehhhccc--hHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 44444454 33333 9999999999998 999999999999999999999965 2 7889999999999999999
Q ss_pred HHHHHHhCCceeecc--hhHHHHhC
Q 028019 111 KFLADALRYYYFDSD--SLVFEAAG 133 (215)
Q Consensus 111 k~LA~~Lg~~~ld~D--~li~~~~G 133 (215)
+++|++.|..|++.+ .+....+|
T Consensus 145 KA~Akeaga~fInv~~s~lt~KWfg 169 (386)
T KOG0737|consen 145 KAIAKEAGANFINVSVSNLTSKWFG 169 (386)
T ss_pred HHHHHHcCCCcceeeccccchhhHH
Confidence 999999999997664 33444443
No 111
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.54 E-value=5.1e-08 Score=95.85 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=36.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~ 131 (215)
.+.|.|.||+||||||+|+.||++||++|+|+|.+++..
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 457999999999999999999999999999999998875
No 112
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.54 E-value=4.1e-07 Score=79.64 Aligned_cols=39 Identities=21% Similarity=0.168 Sum_probs=35.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
..|.|+|.+||||||+++.|++.+|++++|.|.+..+.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~ 40 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQ 40 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHH
Confidence 468899999999999999999989999999999988765
No 113
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.54 E-value=6.2e-07 Score=74.85 Aligned_cols=112 Identities=14% Similarity=0.203 Sum_probs=58.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCce--eecchhHHHHhCCCch-HHHH--hhh---hhHHHHHHH---HHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY--FDSDSLVFEAAGGESA-AKAF--RES---DEKGYQQAE---TEVLKQLS 161 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~--ld~D~li~~~~G~~si-~e~~--~~~---ge~~fr~~e---~~vL~~L~ 161 (215)
++.|+|-|+|.|||||+|+.|.+.+.-+| +..|.++..+..+... ..-+ ... ....++... ...+..++
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a 80 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMA 80 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999998664 5668877643210000 0001 000 012222222 23345556
Q ss_pred cCCCeEEEeCCceeechHH-H----HhhcC--CcEEEEECCHHHHHhh-hcCC
Q 028019 162 SMGRLVVCAGNGAVQSSAN-L----ALLRH--GISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 162 ~~~~~VLa~G~g~Vl~~~~-r----~~L~~--g~vV~Ld~p~e~l~eR-~~rg 206 (215)
..+..||.- .++..+.. . +.|.. -++|.+.||.+++.+| ..||
T Consensus 81 ~aG~~VIvD--~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~Rg 131 (174)
T PF07931_consen 81 RAGNNVIVD--DVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARG 131 (174)
T ss_dssp HTT-EEEEE--E--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHT
T ss_pred hCCCCEEEe--cCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcC
Confidence 555555532 34444332 2 33432 2678899999999999 3444
No 114
>PTZ00301 uridine kinase; Provisional
Probab=98.53 E-value=2.4e-07 Score=79.29 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=30.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC-------CceeecchhHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLVFE 130 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg-------~~~ld~D~li~~ 130 (215)
-..|.|.|+|||||||+|+.|++++. ...+..|.++..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~ 47 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRD 47 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccC
Confidence 35788999999999999999998872 336777887754
No 115
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.51 E-value=4.6e-08 Score=81.58 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=28.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhC---C------ceeecchhHH
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALR---Y------YYFDSDSLVF 129 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg---~------~~ld~D~li~ 129 (215)
.|.|.|++||||||+|+.|++.|+ . .++..|.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~ 44 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYD 44 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccccc
Confidence 478999999999999999999997 2 3566776543
No 116
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.50 E-value=4.9e-07 Score=77.40 Aligned_cols=105 Identities=25% Similarity=0.370 Sum_probs=62.3
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCc-----e-eecchhHHH-----HhCCC---chHHHHhhhhhHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYY-----Y-FDSDSLVFE-----AAGGE---SAAKAFRESDEKGYQQAETEV 156 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~-----~-ld~D~li~~-----~~G~~---si~e~~~~~ge~~fr~~e~~v 156 (215)
-++..|.|.|++||||||+++.|+..+... . ++.|++... ..|.. ..++.+ +...+. ++
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~---d~~~~~----~~ 103 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETF---DVAGLA----AL 103 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCC---CHHHHH----HH
Confidence 367788899999999999999999988532 2 666664421 11100 001111 111111 12
Q ss_pred HHHHHc--------------------------CCCeEEEeCCceeechHHHHhhc--CCcEEEEECCHHHHHhh
Q 028019 157 LKQLSS--------------------------MGRLVVCAGNGAVQSSANLALLR--HGISLWIDVPPGMVARM 202 (215)
Q Consensus 157 L~~L~~--------------------------~~~~VLa~G~g~Vl~~~~r~~L~--~g~vV~Ld~p~e~l~eR 202 (215)
+..+.. ....||..|.+.+.....+..+. .+.+|||++|.+++.+|
T Consensus 104 l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R 177 (229)
T PRK09270 104 LRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRER 177 (229)
T ss_pred HHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHH
Confidence 222210 12355666666665555555554 57999999999999998
No 117
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.49 E-value=2e-06 Score=70.96 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=25.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
+++.|+|.|++||||||+++.|+++++.
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999853
No 118
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.48 E-value=2.8e-07 Score=86.46 Aligned_cols=63 Identities=14% Similarity=0.271 Sum_probs=46.8
Q ss_pred HhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh-HHH--HhCCCchHHHHhhhhhHHHH
Q 028019 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL-VFE--AAGGESAAKAFRESDEKGYQ 150 (215)
Q Consensus 87 ~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l-i~~--~~G~~si~e~~~~~ge~~fr 150 (215)
+..+..+..|+|+||||+|||++|+.||+.++++|++.|.. +++ ..| ..+.+++....+.+++
T Consensus 41 ~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG-~dvE~i~r~l~e~A~~ 106 (441)
T TIGR00390 41 LKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG-RDVESMVRDLTDAAVK 106 (441)
T ss_pred cccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc-CCHHHHHHHHHHHHHH
Confidence 34456789999999999999999999999999999999953 332 233 4565665555554433
No 119
>COG4639 Predicted kinase [General function prediction only]
Probab=98.47 E-value=1.1e-06 Score=72.55 Aligned_cols=106 Identities=16% Similarity=0.126 Sum_probs=62.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~ 172 (215)
...++|+|.|||||||+|+.. .+....+++|++.... |...-.+......+..+..+...+-+.|....-.|+..
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~l-g~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidA-- 76 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLL-GVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDA-- 76 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHh-hhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEc--
Confidence 356899999999999999963 3467889999987654 21111111112223344444444333344333345532
Q ss_pred ceeechHHHHhh-c----C---CcEEEEECCHHHHHhhhc
Q 028019 173 GAVQSSANLALL-R----H---GISLWIDVPPGMVARMDH 204 (215)
Q Consensus 173 g~Vl~~~~r~~L-~----~---g~vV~Ld~p~e~l~eR~~ 204 (215)
.-+++++|..+ . - ...||++.|++.|.+|++
T Consensus 77 -tn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk 115 (168)
T COG4639 77 -TNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNK 115 (168)
T ss_pred -ccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhh
Confidence 12345555533 1 1 256999999999999953
No 120
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.45 E-value=1.7e-06 Score=74.29 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=26.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~l 122 (215)
.+.|+|-||-|+||||+|+.||+++|.+.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 468999999999999999999999997653
No 121
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.45 E-value=1.7e-06 Score=71.43 Aligned_cols=29 Identities=31% Similarity=0.302 Sum_probs=25.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 96 VFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
|+|.|++||||||+++.|++.+|+.++.-
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~~E 30 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVVPE 30 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCccccc
Confidence 78999999999999999999988866543
No 122
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.44 E-value=1.9e-06 Score=71.30 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=24.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+++.|+|.|++||||||+++.|++.+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 56889999999999999999999987
No 123
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.44 E-value=8.5e-07 Score=74.20 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=34.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhC
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG 133 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G 133 (215)
.|.|+|..||||||+++.|++ +|++++|.|.+..+.+.
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~ 39 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYE 39 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTS
T ss_pred EEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhh
Confidence 588999999999999999988 99999999999888763
No 124
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=5.9e-08 Score=89.04 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=67.2
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeec--chhHHHH
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEA 131 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~--D~li~~~ 131 (215)
+++.++.+ ++.-++++.|.+.||.+.-+++..+ +|+-|+|.||||+|||-+||++|.+.++.|+.. .+++...
T Consensus 148 vtY~dIGG--L~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKY 225 (406)
T COG1222 148 VTYEDIGG--LDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKY 225 (406)
T ss_pred CChhhccC--HHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHH
Confidence 78999988 8888999999999999999999997 899999999999999999999999999998654 5666665
Q ss_pred hC
Q 028019 132 AG 133 (215)
Q Consensus 132 ~G 133 (215)
.|
T Consensus 226 iG 227 (406)
T COG1222 226 IG 227 (406)
T ss_pred hc
Confidence 55
No 125
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.42 E-value=1.7e-06 Score=72.75 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=32.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC---CceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg---~~~ld~D~li~ 129 (215)
++..|.|+|++||||||+++.|+..++ ..++..|.++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYK 45 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccccc
Confidence 567888999999999999999999886 56788887653
No 126
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.41 E-value=2.1e-06 Score=85.11 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=34.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~ 131 (215)
.|.|.|+|||||||+|+.||++||+.|+|++.++...
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 6899999999999999999999999999999887663
No 127
>PRK13973 thymidylate kinase; Provisional
Probab=98.41 E-value=4.6e-06 Score=70.84 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=29.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCceeec
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDS 124 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~~ld~ 124 (215)
+++-|+|.|+.||||||+++.|++.| |+.++.+
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 46789999999999999999999999 8887655
No 128
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.40 E-value=4.1e-06 Score=70.80 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=32.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
|.|+|.+||||||+++.|++ +|+.+++.|.+..+.+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~ 37 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYT 37 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHH
Confidence 78999999999999999976 7999999999977764
No 129
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.37 E-value=7.7e-06 Score=68.38 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=69.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh-CCceeecchhHHHHhCCCch---HHHHhhhhhHHHHHHHHHHHHHHHcCCC-eE
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESA---AKAFRESDEKGYQQAETEVLKQLSSMGR-LV 167 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L-g~~~ld~D~li~~~~G~~si---~e~~~~~ge~~fr~~e~~vL~~L~~~~~-~V 167 (215)
++.++++|.||+||||+-+.+.+.+ +..+++-.+++.+....... .+-+..--.+..+.+.....+.+.++.. .+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~ii 83 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALEII 83 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhceE
Confidence 4789999999999999999999999 88889988887775431111 1111111122334444444445554433 44
Q ss_pred EEeC------Cceee-ch-HHHHhhcCCcEEEEECCHHHHHhh
Q 028019 168 VCAG------NGAVQ-SS-ANLALLRHGISLWIDVPPGMVARM 202 (215)
Q Consensus 168 La~G------~g~Vl-~~-~~r~~L~~g~vV~Ld~p~e~l~eR 202 (215)
+.+. .|-+. -| ...+.+..+.+|.|..+++.++.|
T Consensus 84 vDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~R 126 (189)
T COG2019 84 VDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILER 126 (189)
T ss_pred EeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHH
Confidence 4433 22221 12 234556688999999999999988
No 130
>PRK12338 hypothetical protein; Provisional
Probab=98.37 E-value=4.8e-06 Score=75.67 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=35.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCcee-ecchhHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFEAAG 133 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~l-d~D~li~~~~G 133 (215)
+|..|+|.|+|||||||+|+.||+++|+.++ ++|.+.+.+.|
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~ 45 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG 45 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence 4678999999999999999999999999988 66666555443
No 131
>PRK07667 uridine kinase; Provisional
Probab=98.35 E-value=3.6e-06 Score=70.41 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=32.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFE 130 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li~~ 130 (215)
....|.|.|++||||||+++.|++.++ ...++.|+++..
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~ 59 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE 59 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence 446788999999999999999999874 458999997654
No 132
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.34 E-value=4.6e-06 Score=69.87 Aligned_cols=108 Identities=13% Similarity=0.206 Sum_probs=54.8
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh---CCceeecchhHHHHhCCCchHHHHhhhhh-------HHHHHHHHHHHH
Q 028019 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAFRESDE-------KGYQQAETEVLK 158 (215)
Q Consensus 89 ~~l~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~~ld~D~li~~~~G~~si~e~~~~~ge-------~~fr~~e~~vL~ 158 (215)
+.-+|..+++.|.|||||||++..+.+.+ ++.+++.|++....- ...+....... ..-..+-..++.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 87 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHP---DYDELLKADPDEASELTQKEASRLAEKLIE 87 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGST---THHHHHHHHCCCTHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhcc---chhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 44578889999999999999999999987 788999999765321 11111111100 001112223344
Q ss_pred HHHcC-CCeEEEeCCceeechHHHH----hhc-CC---cEEEEECCHHHHHhh
Q 028019 159 QLSSM-GRLVVCAGNGAVQSSANLA----LLR-HG---ISLWIDVPPGMVARM 202 (215)
Q Consensus 159 ~L~~~-~~~VLa~G~g~Vl~~~~r~----~L~-~g---~vV~Ld~p~e~l~eR 202 (215)
..... .+.|+.+ ...++.... .++ .| .++++.+|++...+|
T Consensus 88 ~a~~~~~nii~E~---tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~r 137 (199)
T PF06414_consen 88 YAIENRYNIIFEG---TLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIER 137 (199)
T ss_dssp HHHHCT--EEEE-----TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHH
T ss_pred HHHHcCCCEEEec---CCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHH
Confidence 44443 3455542 223333222 333 44 568888999988777
No 133
>PLN02348 phosphoribulokinase
Probab=98.32 E-value=9.8e-07 Score=82.08 Aligned_cols=38 Identities=11% Similarity=-0.074 Sum_probs=32.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC--------------------ceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRY--------------------YYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~--------------------~~ld~D~li~ 129 (215)
++..|.|.|.+||||||+++.|++.|+. ..+++|+++.
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~ 105 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS 105 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccC
Confidence 4567779999999999999999999963 3689998864
No 134
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.8e-06 Score=76.98 Aligned_cols=93 Identities=22% Similarity=0.206 Sum_probs=72.1
Q ss_pred ccccccccceeeeccCCceeeecccCCCCccccccccCCCchhhHHHHHHhHhhc--cCCcEEEEEccCCCcHHHHHHHH
Q 028019 36 YAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTE--LKGTSVFLVGMNNAIKTHLGKFL 113 (215)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~I~LiG~pGSGKSTlAk~L 113 (215)
.+-+|.-++--...-+|+ +-|+|+++ +++--.++.|.++||++--.++.- -+-+-|+|.||||+|||-+|+.+
T Consensus 112 ~kKLr~~L~sAIv~EKPN---VkWsDVAG--LE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAV 186 (439)
T KOG0739|consen 112 KKKLRSALNSAIVREKPN---VKWSDVAG--LEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAV 186 (439)
T ss_pred HHHHHHHhhhhhhccCCC---Cchhhhcc--chhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHH
Confidence 345666666555555564 78999999 888888999999999886655543 23467999999999999999999
Q ss_pred HHHhCCceee--cchhHHHHhC
Q 028019 114 ADALRYYYFD--SDSLVFEAAG 133 (215)
Q Consensus 114 A~~Lg~~~ld--~D~li~~~~G 133 (215)
|.+.+-.|++ +.+++....|
T Consensus 187 ATEAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 187 ATEANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred HhhcCCceEEeehHHHHHHHhc
Confidence 9999987764 4567777666
No 135
>PHA00729 NTP-binding motif containing protein
Probab=98.30 E-value=4.2e-06 Score=72.66 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=66.8
Q ss_pred hHHHHHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCc--eeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHH
Q 028019 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYY--YFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEV 156 (215)
Q Consensus 79 ~~~~~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~--~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~v 156 (215)
+.|+-.+++... ....|+|+|+||+||||+|..|+++++.. .++.|...+.. + ... -+++.. +....
T Consensus 4 ~~k~~~~~l~~~-~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~-~-~~~-~fid~~------~Ll~~- 72 (226)
T PHA00729 4 LAKKIVSAYNNN-GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQY-V-QNS-YFFELP------DALEK- 72 (226)
T ss_pred HHHHHHHHHhcC-CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhc-C-CcE-EEEEHH------HHHHH-
Confidence 344444444333 44689999999999999999999998632 33444333321 1 110 001100 11111
Q ss_pred HHHHHcC---CC-eEEEeCCceeech-HH----------HHhhc--CCcEEEEECCHHHHHhh-hcCCCCCCCCC
Q 028019 157 LKQLSSM---GR-LVVCAGNGAVQSS-AN----------LALLR--HGISLWIDVPPGMVARM-DHSGFPESEVS 213 (215)
Q Consensus 157 L~~L~~~---~~-~VLa~G~g~Vl~~-~~----------r~~L~--~g~vV~Ld~p~e~l~eR-~~rg~~~~~~~ 213 (215)
+...... .. .||..-|-++... .. -..++ ..+++++.++++.|.+| ..||+++.+|.
T Consensus 73 L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~~~~kI~ 147 (226)
T PHA00729 73 IQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGWYQIRVT 147 (226)
T ss_pred HHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCCcHHHhh
Confidence 1111111 12 2444322233210 01 11222 56889999999999999 88999887775
No 136
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.30 E-value=1.1e-06 Score=74.84 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=34.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~ 131 (215)
+..|.|+|.+||||||+++.+++ +|++.+|+|++..+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~ 39 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREV 39 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHH
Confidence 46789999999999999999999 999999999998854
No 137
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.30 E-value=1.5e-06 Score=72.14 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=30.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh-----CCceeecchhHH
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVF 129 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L-----g~~~ld~D~li~ 129 (215)
.|.|.|.+||||||+|+.|++.+ +..+++.|+++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 37899999999999999999997 356899999886
No 138
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=9.2e-07 Score=85.92 Aligned_cols=75 Identities=19% Similarity=0.136 Sum_probs=64.0
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc--hhHHHH
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD--SLVFEA 131 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D--~li~~~ 131 (215)
++|.|+.+ ++.+.-.+....+.|+|..+++..+ .|.-|+|+||||||||-+||++|.+-|+.|++.- +++...
T Consensus 508 VtW~dIGa--L~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 508 VTWDDIGA--LEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CChhhccc--HHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 89999987 7777778888899999999999996 7899999999999999999999999999998753 444433
Q ss_pred hC
Q 028019 132 AG 133 (215)
Q Consensus 132 ~G 133 (215)
.|
T Consensus 586 VG 587 (802)
T KOG0733|consen 586 VG 587 (802)
T ss_pred hh
Confidence 33
No 139
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.26 E-value=4.6e-07 Score=84.41 Aligned_cols=70 Identities=13% Similarity=0.065 Sum_probs=60.5
Q ss_pred eeeecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 54 ITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 54 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
...++|.|+.+ ++.....+.+.+.++.+..+++..+ +++.|+|.|+||+|||++++.+|..++..++...
T Consensus 139 ~p~v~~~digG--l~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~ 211 (398)
T PTZ00454 139 KPDVTYSDIGG--LDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV 211 (398)
T ss_pred CCCCCHHHcCC--HHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 34588999988 7778888889999998888888875 6899999999999999999999999999887653
No 140
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.26 E-value=2e-05 Score=67.16 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=26.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
.|+|-|+.||||||+++.|++++++.++..
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e 30 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPE 30 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeec
Confidence 378999999999999999999998765533
No 141
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.25 E-value=9.8e-07 Score=67.24 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=27.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCceeecch
Q 028019 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~ 126 (215)
|+|+|+||+|||++++.+|+.++.+++..|.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccc
Confidence 6899999999999999999999988866653
No 142
>PRK05439 pantothenate kinase; Provisional
Probab=98.24 E-value=4.1e-06 Score=75.82 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=31.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-------CceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-------~~~ld~D~li~ 129 (215)
.+..|.|.|+|||||||+|+.|++.++ ...+..|+++.
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 456788999999999999999999775 34788888764
No 143
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.22 E-value=3.6e-06 Score=69.76 Aligned_cols=100 Identities=24% Similarity=0.417 Sum_probs=55.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchH-HHHhh--------------------------hhhH
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA-KAFRE--------------------------SDEK 147 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~-e~~~~--------------------------~ge~ 147 (215)
.|.|.+..|||++++|+.||++||++++|- +++.+.+....+. +.+.. ....
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 478999999999999999999999999999 5666543211111 01110 0112
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEeCCceeechHHHHhhc---CCcEEEEECCHHHHHhh
Q 028019 148 GYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM 202 (215)
Q Consensus 148 ~fr~~e~~vL~~L~~~~~~VLa~G~g~Vl~~~~r~~L~---~g~vV~Ld~p~e~l~eR 202 (215)
.+.....+++.+++..+++||. |.+. ++ .|+ +.+-|||.+|.+.+.+|
T Consensus 80 ~~~~~~~~~i~~la~~~~~Vi~-GR~a-----~~-il~~~~~~l~V~i~A~~~~Rv~r 130 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCVIV-GRCA-----NY-ILRDIPNVLHVFIYAPLEFRVER 130 (179)
T ss_dssp HHHHHHHHHHHHHHH---EEEE-STTH-----HH-HTTT-TTEEEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEE-ecCH-----hh-hhCCCCCeEEEEEECCHHHHHHH
Confidence 2334455677788766677664 2221 11 222 23679999999999999
No 144
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.21 E-value=5.1e-06 Score=71.28 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=28.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC-------CceeecchhHH
Q 028019 96 VFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLVF 129 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~Lg-------~~~ld~D~li~ 129 (215)
|.|.|++||||||+++.|+..+. ..+++.|+++.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~ 42 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY 42 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccC
Confidence 67999999999999999999984 34678888753
No 145
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.19 E-value=3.8e-06 Score=79.04 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=34.5
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh
Q 028019 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (215)
Q Consensus 90 ~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l 127 (215)
...+..|+|+||||+|||++|+.||+.++.+|+..|..
T Consensus 47 e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t 84 (443)
T PRK05201 47 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (443)
T ss_pred ccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecch
Confidence 34578999999999999999999999999999999864
No 146
>PRK15453 phosphoribulokinase; Provisional
Probab=98.19 E-value=3.9e-06 Score=75.18 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=33.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li~ 129 (215)
++..|.|+|.|||||||+++.|++.++ ..+++.|+++.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 567899999999999999999999884 56899999885
No 147
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.18 E-value=8.5e-07 Score=82.11 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=56.2
Q ss_pred eecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 56 TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 56 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.++|.++.+ ++.....+.+.+.++.+..+++..+ +++.|+|+|+||+|||++|+.+|++++..++..+
T Consensus 127 ~~~~~di~G--l~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~ 197 (389)
T PRK03992 127 NVTYEDIGG--LEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 197 (389)
T ss_pred CCCHHHhCC--cHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEee
Confidence 367777777 6677778888888888888887764 6788999999999999999999999998876553
No 148
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.17 E-value=4.6e-06 Score=74.80 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=30.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-------CceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-------~~~ld~D~li~ 129 (215)
.+..|.|.|++||||||+++.|+..+. ..++..|.++.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 456777999999999999999988774 34577787653
No 149
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.17 E-value=1.7e-05 Score=71.09 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=26.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
.++.|+|+|++||||||+++.|+ .+|+.++|.
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~ 36 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN 36 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC
Confidence 45689999999999999999996 468877643
No 150
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.16 E-value=4.6e-06 Score=69.40 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=25.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
++..|+|+|++||||||+++.|++.++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 578899999999999999999999875
No 151
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.12 E-value=1.3e-06 Score=82.44 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=56.5
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
.+|.|+.+ ++..+..+.+.+.++....+++..+ +++.++|+|+||+|||++|+.+|..++..++..
T Consensus 180 ~~~~DIgG--l~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V 248 (438)
T PTZ00361 180 ESYADIGG--LEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRV 248 (438)
T ss_pred CCHHHhcC--HHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence 67788877 7778888888888888888887764 778999999999999999999999999887654
No 152
>PRK07429 phosphoribulokinase; Provisional
Probab=98.10 E-value=5.8e-06 Score=75.23 Aligned_cols=37 Identities=22% Similarity=0.094 Sum_probs=32.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC---CceeecchhH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLV 128 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg---~~~ld~D~li 128 (215)
++..|.|+|++||||||+++.|++.++ ...++.|+++
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 456788999999999999999999998 5678888875
No 153
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.10 E-value=9.5e-06 Score=67.95 Aligned_cols=26 Identities=8% Similarity=0.041 Sum_probs=24.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+++.|+|+||+|||||||++.|.+.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 57889999999999999999998876
No 154
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.06 E-value=3.5e-05 Score=73.23 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=36.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCc-eeecchhHHHHh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYY-YFDSDSLVFEAA 132 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~-~ld~D~li~~~~ 132 (215)
-+|..|+++|++|+||||+|..||+++|+. ++++|.+.+.+.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr 295 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLR 295 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHH
Confidence 358899999999999999999999999998 679998777544
No 155
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.05 E-value=8.2e-06 Score=72.35 Aligned_cols=33 Identities=12% Similarity=0.009 Sum_probs=28.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCceeecchhH
Q 028019 96 VFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLV 128 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~L---g~~~ld~D~li 128 (215)
|.|+|++||||||+++.|+..+ +...++.|+++
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 6799999999999999999887 45678888775
No 156
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.05 E-value=5.2e-06 Score=67.62 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=24.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCce
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY 121 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ 121 (215)
++.|+|+|++||||||+++.|++.++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~ 29 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLK 29 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcccc
Confidence 46799999999999999999999775433
No 157
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.04 E-value=6.8e-05 Score=67.71 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=34.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc-eeecchhHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY-YFDSDSLVFE 130 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~-~ld~D~li~~ 130 (215)
.|..|+|.|++||||||+|+.||++||+. ++..|.+.+.
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~ 130 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREV 130 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 56789999999999999999999999998 6888887744
No 158
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.04 E-value=2e-05 Score=71.25 Aligned_cols=36 Identities=31% Similarity=0.279 Sum_probs=33.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l 127 (215)
+++.|+|+||+|||||++|..||++++..+++.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 457899999999999999999999999999999983
No 159
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.04 E-value=2.4e-06 Score=77.99 Aligned_cols=67 Identities=18% Similarity=0.119 Sum_probs=53.6
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++|.+..+ ++.....+.+.+.++.+..+++..+ .++.++|.|+||+|||++++.+|+.++..++...
T Consensus 119 ~~~~di~G--l~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 119 VSYEDIGG--LEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred CCHHHhCC--hHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 56666666 6666677777777777777777664 6788999999999999999999999998886654
No 160
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.03 E-value=2.4e-05 Score=65.29 Aligned_cols=116 Identities=20% Similarity=0.180 Sum_probs=67.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc--eeecchhHHHH--hCC-----CchHHHHhhhhhHHH----------HHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY--YFDSDSLVFEA--AGG-----ESAAKAFRESDEKGY----------QQA 152 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~--~ld~D~li~~~--~G~-----~si~e~~~~~ge~~f----------r~~ 152 (215)
+++.|+++||+|+||-|+-......+.-. +.=.-.++-.. .|+ .+-.++....++..| .-+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi 83 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI 83 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence 58899999999999999999998888533 11111111111 110 111222222222111 112
Q ss_pred HHHHHHHHHcCCCeEEEeCCceeechHHHHhhcCCcEEEEECCHHHHHhh-hcCCCCC
Q 028019 153 ETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPE 209 (215)
Q Consensus 153 e~~vL~~L~~~~~~VLa~G~g~Vl~~~~r~~L~~g~vV~Ld~p~e~l~eR-~~rg~~~ 209 (215)
..++-..|. .+..||+.|.-.++ |+.+.....-.+|.|.++++++.+| ..||...
T Consensus 84 p~eId~wl~-~G~vvl~NgSRa~L-p~arrry~~Llvv~ita~p~VLaqRL~~RGREs 139 (192)
T COG3709 84 PAEIDLWLA-AGDVVLVNGSRAVL-PQARRRYPQLLVVCITASPEVLAQRLAERGRES 139 (192)
T ss_pred chhHHHHHh-CCCEEEEeccHhhh-HHHHHhhhcceeEEEecCHHHHHHHHHHhccCC
Confidence 334334444 34567776655655 5555544556889999999999999 7777643
No 161
>PLN02924 thymidylate kinase
Probab=98.01 E-value=5.3e-05 Score=65.19 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=26.7
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
-++..|+|.|..||||||+++.|++.|+..
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~ 43 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGL 43 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999644
No 162
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.00 E-value=1e-05 Score=68.40 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=23.7
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 90 ELKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 90 ~l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
.-+++.|+|+|++||||||+++.|.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 347788999999999999999999764
No 163
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.00 E-value=4.6e-06 Score=80.13 Aligned_cols=62 Identities=18% Similarity=0.126 Sum_probs=51.8
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
++|.++.+ ++..+..+.+.+.++.+..+++... +++.|+|.||||+|||++++.+|+.++..
T Consensus 179 v~~~dIgG--l~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 179 VTYADIGG--LDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCHHHcCC--hHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 67788776 6666777788888888888888763 67889999999999999999999998754
No 164
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.96 E-value=3.8e-05 Score=63.55 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=23.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++.|+|+||+||||+|+++.|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 5679999999999999999999986
No 165
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=8.8e-06 Score=80.85 Aligned_cols=73 Identities=19% Similarity=0.187 Sum_probs=64.9
Q ss_pred CCceeeecccCCCCccccccccCCCchhhHHHHHHhHhhc-c-CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 51 KPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTE-L-KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 51 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l-~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
+|..-+|+|.|+.+ ++.+-.++-++.-+|.++-+++.- | +.--|+|.||||+|||-+||++|.++.+.|++.-
T Consensus 663 APKIPnV~WdDVGG--LeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVK 737 (953)
T KOG0736|consen 663 APKIPNVSWDDVGG--LEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVK 737 (953)
T ss_pred CCCCCccchhcccC--HHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeec
Confidence 46677799999998 888888889999999999999987 4 4677999999999999999999999999998864
No 166
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.95 E-value=8.5e-06 Score=57.46 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.|+|+|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999995
No 167
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.94 E-value=5e-06 Score=82.60 Aligned_cols=67 Identities=16% Similarity=0.055 Sum_probs=53.6
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++|.++.+ ++.....+.+.+.++.+..+++..+ .++.|+|.||||||||++|+.+|..++..|+..+
T Consensus 450 ~~~~di~g--~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~ 519 (733)
T TIGR01243 450 VRWSDIGG--LEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR 519 (733)
T ss_pred cchhhccc--HHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 56777766 5555666777777777777777664 6778999999999999999999999999987654
No 168
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.93 E-value=2.2e-05 Score=62.90 Aligned_cols=46 Identities=30% Similarity=0.192 Sum_probs=37.1
Q ss_pred HHHHHHhHhhcc-CCcEEEEEccCCCcHHHHHHHHHHHhCCc-eeecc
Q 028019 80 VKKKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRYY-YFDSD 125 (215)
Q Consensus 80 ~~~~~~~~~~~l-~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~-~ld~D 125 (215)
...-++.+.+.+ ++..|+|.|.+|+||||++|.+++.+|+. .+.+.
T Consensus 8 t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SP 55 (133)
T TIGR00150 8 MDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSP 55 (133)
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCC
Confidence 344688888887 56788899999999999999999999975 34333
No 169
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.92 E-value=6.9e-06 Score=83.17 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=41.9
Q ss_pred HHHhHhhcc--CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH
Q 028019 83 KAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (215)
Q Consensus 83 ~~~~~~~~l--~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~ 131 (215)
|++-+.++- .+..|.|.||+||||||+|+.||++||+.|+|++.++...
T Consensus 22 ~~~~~~~~~~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 22 RARTVLQCRPMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred eeeeeeeecccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 566666663 4458899999999999999999999999999999988764
No 170
>PRK13974 thymidylate kinase; Provisional
Probab=97.92 E-value=0.00013 Score=61.94 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=24.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
++..|.|.|++||||||+++.|++.+.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999885
No 171
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=97.92 E-value=3.5e-05 Score=67.27 Aligned_cols=113 Identities=13% Similarity=0.137 Sum_probs=68.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh-CCCchH----HHHhhhhhHHHHHHHHHHHHHHHcCCCe
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAA----KAFRESDEKGYQQAETEVLKQLSSMGRL 166 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~-G~~si~----e~~~~~ge~~fr~~e~~vL~~L~~~~~~ 166 (215)
++.+.+++|+||+||.|++..+++.++..++.+.++..+.. .+.... ++.+ .|.-.-.++-...+...... .
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~-~g~lvpDeiv~~~l~~~l~~--~ 90 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAID-KGKLVPDEVVVRLLEKRLEN--P 90 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHH-hcCcCcHHHHHHHHHhhccc--c
Confidence 68899999999999999999999999999999988877642 111111 1111 11110011111112221111 1
Q ss_pred EEEeCCceeechHH------HHhhc----CCcEEEEECCHHHHHhh-hcCCCCC
Q 028019 167 VVCAGNGAVQSSAN------LALLR----HGISLWIDVPPGMVARM-DHSGFPE 209 (215)
Q Consensus 167 VLa~G~g~Vl~~~~------r~~L~----~g~vV~Ld~p~e~l~eR-~~rg~~~ 209 (215)
.|..|++++..- .++.+ .+.||.|++|.+.+.+| ..|.+.|
T Consensus 91 --~~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp 142 (235)
T KOG3078|consen 91 --RCQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHP 142 (235)
T ss_pred --ccccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccC
Confidence 244556655321 11222 46899999999999999 6665555
No 172
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.89 E-value=1.8e-05 Score=68.48 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=39.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc-----eeecchhHHHHhCCCchHHHHhhhhhH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY-----YFDSDSLVFEAAGGESAAKAFRESDEK 147 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~-----~ld~D~li~~~~G~~si~e~~~~~ge~ 147 (215)
.+-+|+++|+||.|||++|+.|++.|+|. .++..+++....+...-.++|+-..++
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~ 71 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEE 71 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChH
Confidence 45678899999999999999999998644 788899888887632334455443333
No 173
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.89 E-value=3.5e-05 Score=68.68 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=30.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhHH
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li~ 129 (215)
.|.|+|.+||||||+++.|++.++ ..+++.|+++.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 378999999999999999998874 56899999887
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.88 E-value=1.6e-05 Score=59.19 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
+..++|+|+||+||||+++.+|..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999999999764
No 175
>PLN02840 tRNA dimethylallyltransferase
Probab=97.87 E-value=3.8e-05 Score=72.24 Aligned_cols=37 Identities=27% Similarity=0.233 Sum_probs=33.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l 127 (215)
.+++.|+|+|++||||||++..||++++..+++.|.+
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 3456799999999999999999999999999999863
No 176
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=8.7e-06 Score=72.55 Aligned_cols=75 Identities=20% Similarity=0.155 Sum_probs=63.8
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceee--cchhHHHH
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEA 131 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld--~D~li~~~ 131 (215)
+|+.|+.+ ++---+++.|.+.||..+.++-..+ +|+-+++.||||||||-++|.+|.+....|+. ..+++...
T Consensus 152 vsy~digg--ld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqky 229 (408)
T KOG0727|consen 152 VSYADIGG--LDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 229 (408)
T ss_pred cccccccc--chhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHH
Confidence 88999987 7766788999999999999999986 88999999999999999999999999877754 44555555
Q ss_pred hC
Q 028019 132 AG 133 (215)
Q Consensus 132 ~G 133 (215)
.|
T Consensus 230 lg 231 (408)
T KOG0727|consen 230 LG 231 (408)
T ss_pred hc
Confidence 55
No 177
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.84 E-value=8.8e-06 Score=80.88 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=48.5
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++|+++.+ .+.....+.+.+.++.+..+++..+ .++.|+|+|+||+|||++++.+|..++..++..+
T Consensus 175 ~~~~di~G--~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~ 244 (733)
T TIGR01243 175 VTYEDIGG--LKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN 244 (733)
T ss_pred CCHHHhcC--HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEe
Confidence 44444444 3344445555566666666666664 6788999999999999999999999998877554
No 178
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.00018 Score=63.80 Aligned_cols=48 Identities=17% Similarity=0.080 Sum_probs=39.7
Q ss_pred HHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCce-eecchhHHHH
Q 028019 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYY-FDSDSLVFEA 131 (215)
Q Consensus 84 ~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~-ld~D~li~~~ 131 (215)
=+.+++...|..|+|-|.||.||||+|..||.+||... +.+|.+++-+
T Consensus 80 wR~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvl 128 (299)
T COG2074 80 WRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVL 128 (299)
T ss_pred HHHHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHH
Confidence 34566666788888999999999999999999999885 6778776654
No 179
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.3e-05 Score=75.82 Aligned_cols=71 Identities=17% Similarity=0.095 Sum_probs=57.4
Q ss_pred eeeecccCCCCccccccccCCCchhhHHHHHHhHhhc--c-CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecch
Q 028019 54 ITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTE--L-KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (215)
Q Consensus 54 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l-~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~ 126 (215)
.-.+.|.++.+ ++..-+.+.+.+..+.+..+.+.. + .++.|+|.||||+|||.+|+.+|..++.+|+..+.
T Consensus 236 ~~~v~~~digg--l~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~ 309 (494)
T COG0464 236 DEDVTLDDIGG--LEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG 309 (494)
T ss_pred CCCcceehhhc--HHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeC
Confidence 33467777766 666667778888888888888775 3 66689999999999999999999999999987764
No 180
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.78 E-value=2.6e-05 Score=61.01 Aligned_cols=28 Identities=36% Similarity=0.294 Sum_probs=25.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCcee
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~l 122 (215)
.|+|+|+||+|||++++.+|+.++.+++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 3799999999999999999999998874
No 181
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.78 E-value=3.7e-05 Score=70.10 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=38.3
Q ss_pred cccCCCchhhHHH-HHHhHhhc-cCCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 028019 70 KVAAEDPSFAVKK-KAADISTE-LKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (215)
Q Consensus 70 ~~~~~~~~~~~~~-~~~~~~~~-l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~l 122 (215)
.+|..|....+.. ..+.+... ..++.|+|.|+||+||||+++.||+++|++++
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 4555565544421 12223333 36788999999999999999999999999985
No 182
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.76 E-value=1.9e-05 Score=75.58 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=32.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecch
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~ 126 (215)
.++.|+|.||||||||.+|+.+|..++++++..|.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~ 292 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDV 292 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEh
Confidence 67889999999999999999999999999887663
No 183
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.75 E-value=0.00054 Score=59.09 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=42.6
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhC-----Cceeecch
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDS 126 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~ 126 (215)
.+++...+ .+++++..... ++ ...+.+.....+..++|+|++|+|||++++.++.++. ..|++.+.
T Consensus 13 ~~~~~~~~--fd~f~~~~n~~-a~-~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 13 LYLPDDET--FASFYPGDNDS-LL-AALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCCCcCC--ccccccCccHH-HH-HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 44444443 55666653322 22 2333343334557899999999999999999998765 45777765
No 184
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=5.9e-06 Score=74.77 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=63.1
Q ss_pred cccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeec--chhHHHHh
Q 028019 58 SIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAA 132 (215)
Q Consensus 58 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~--D~li~~~~ 132 (215)
++.|+.+ +++-+|++.|++.||.-+-+.-.++ +|+-++|.|.||+|||-+|+++|....+.|+.. .+++....
T Consensus 183 ty~diGG--le~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkyl 260 (440)
T KOG0726|consen 183 TYADIGG--LESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 260 (440)
T ss_pred hhccccc--HHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHh
Confidence 6778877 8889999999999999999998886 889999999999999999999999998887543 45555554
Q ss_pred C
Q 028019 133 G 133 (215)
Q Consensus 133 G 133 (215)
|
T Consensus 261 G 261 (440)
T KOG0726|consen 261 G 261 (440)
T ss_pred c
Confidence 4
No 185
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.73 E-value=0.00028 Score=63.27 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=26.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF 129 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~ 129 (215)
..|+|+|++||||||..+.| +-+||.++ |++-.
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cv--DNlP~ 34 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLGYYCV--DNLPP 34 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcCeeEE--cCCcH
Confidence 56899999999999999999 55787555 46543
No 186
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.72 E-value=6.3e-05 Score=65.90 Aligned_cols=33 Identities=24% Similarity=0.101 Sum_probs=29.7
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceee
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld 123 (215)
..+..|+|.|+||+|||++|+.||+.+|.+++.
T Consensus 19 ~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~ 51 (262)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLAMHVARKRDRPVML 51 (262)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 367889999999999999999999999988763
No 187
>PRK06893 DNA replication initiation factor; Validated
Probab=97.71 E-value=0.00055 Score=58.77 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=38.0
Q ss_pred ccccccCCCchhhHHHHHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHh-----CCceeecc
Q 028019 67 TVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSD 125 (215)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~L-----g~~~ld~D 125 (215)
.+++++.-....+. ...........+.++|.|+||+|||++++.+|.++ +..|++.+
T Consensus 15 fd~f~~~~~~~~~~--~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 15 LDNFYADNNLLLLD--SLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred ccccccCChHHHHH--HHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 66666543332221 22222333455679999999999999999999886 56677765
No 188
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.69 E-value=0.00013 Score=71.39 Aligned_cols=55 Identities=16% Similarity=0.062 Sum_probs=40.9
Q ss_pred CCchhhHHHHHHhHhhcc--CCcEEEEEccCCCcHHHHHHHHHHHhC-CceeecchhH
Q 028019 74 EDPSFAVKKKAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSLV 128 (215)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l--~~~~I~LiG~pGSGKSTlAk~LA~~Lg-~~~ld~D~li 128 (215)
+|--+-+-.++.++...- ....|.|.|++||||||+++.|+..+. ...+..|++.
T Consensus 44 fd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 44 FEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred cccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 444455556777766542 346777999999999999999999884 4578888864
No 189
>PLN02748 tRNA dimethylallyltransferase
Probab=97.68 E-value=0.00011 Score=69.99 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=33.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecch
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~ 126 (215)
-+++.|+|+|++|||||++|..||++++..+++.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 466789999999999999999999999999999995
No 190
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00027 Score=64.48 Aligned_cols=110 Identities=20% Similarity=0.285 Sum_probs=67.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh--HHHH---hCCCc------hH-HHH------hhhhhHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEA---AGGES------AA-KAF------RESDEKGYQQAE 153 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l--i~~~---~G~~s------i~-e~~------~~~ge~~fr~~e 153 (215)
+.+.|+|+|+.|||||-||-.||.+++...+++|.+ ++.. ....+ ++ ..+ +++-...|+..-
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a 85 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA 85 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence 578999999999999999999999999999999864 1110 00000 10 111 112234566666
Q ss_pred HHHHHHHHcCCC-eEEEeCCceeechHHHH---------h----------hc-CCcEEEEECCHHHHHhh
Q 028019 154 TEVLKQLSSMGR-LVVCAGNGAVQSSANLA---------L----------LR-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 154 ~~vL~~L~~~~~-~VLa~G~g~Vl~~~~r~---------~----------L~-~g~vV~Ld~p~e~l~eR 202 (215)
..++..+...+. -||+ ||+-..-+.-+. . ++ ..+++||+++..++.+|
T Consensus 86 ~~aie~I~~rgk~PIv~-GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~ 154 (348)
T KOG1384|consen 86 SRAIEEIHSRGKLPIVV-GGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFER 154 (348)
T ss_pred HHHHHHHHhCCCCCEEe-CCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHH
Confidence 667777776544 3444 444221111000 0 11 24789999999999988
No 191
>PRK13976 thymidylate kinase; Provisional
Probab=97.67 E-value=0.00039 Score=59.35 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=22.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhC
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
-|.|.|.-||||||+++.|++.|.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~ 25 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLS 25 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999984
No 192
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.67 E-value=6e-05 Score=59.68 Aligned_cols=39 Identities=31% Similarity=0.257 Sum_probs=31.5
Q ss_pred HHHHhHhhcc-CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 82 KKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 82 ~~~~~~~~~l-~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
.-++.+.+.+ ++..|+|.|..||||||+.|.+++.+|..
T Consensus 3 ~la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 3 RLAKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4577788887 55678899999999999999999999865
No 193
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.67 E-value=2.4e-05 Score=74.44 Aligned_cols=69 Identities=19% Similarity=0.059 Sum_probs=44.6
Q ss_pred eeeecccCCCCccccccccCCCchhhHHHHHHhHhhc---cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 54 ITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTE---LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 54 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
...++|.+..+ .+.....+.+.+.. .+..+.... -.++.++|.||||+|||++++.+|..++++++..+
T Consensus 49 ~~~~~~~di~g--~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~ 120 (495)
T TIGR01241 49 KPKVTFKDVAG--IDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS 120 (495)
T ss_pred CCCCCHHHhCC--HHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence 34567777765 33233333332222 222222222 25678999999999999999999999999987664
No 194
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.67 E-value=6.3e-05 Score=56.68 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=28.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~~ld~D 125 (215)
.+..++|+|++|+|||++++.+++.+ +..++..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 56789999999999999999999998 65554443
No 195
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=97.66 E-value=8.9e-05 Score=68.77 Aligned_cols=107 Identities=22% Similarity=0.301 Sum_probs=62.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh---CCce--eecchhHHHHhCC--CchHHHHhhhhhHHHHHHHHHHHHHHHcC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYY--FDSDSLVFEAAGG--ESAAKAFRESDEKGYQQAETEVLKQLSSM 163 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~~--ld~D~li~~~~G~--~si~e~~~~~ge~~fr~~e~~vL~~L~~~ 163 (215)
+.+-.|+++|.+|+||||++-.|.+.| |+++ +|.|+++...... -+. ++.++..|+ -.+| .+|...
T Consensus 48 frgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~-----edreenirr-iaev-aklfad 120 (627)
T KOG4238|consen 48 FRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSP-----EDREENIRR-IAEV-AKLFAD 120 (627)
T ss_pred ccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCc-----hhHHHHHHH-HHHH-HHHHhc
Confidence 578889999999999999999998876 6776 5667776554210 221 122333333 2333 333333
Q ss_pred CCeEEEeCCceeechH--HHH---hhc-----CCcEEEEECCHHHHHhhhcCCC
Q 028019 164 GRLVVCAGNGAVQSSA--NLA---LLR-----HGISLWIDVPPGMVARMDHSGF 207 (215)
Q Consensus 164 ~~~VLa~G~g~Vl~~~--~r~---~L~-----~g~vV~Ld~p~e~l~eR~~rg~ 207 (215)
.+.|. -.+++ .|. +|. .+. ..+-||+++|.++|.+|+.+|.
T Consensus 121 aglvc--itsfi-spf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~l 171 (627)
T KOG4238|consen 121 AGLVC--ITSFI-SPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGL 171 (627)
T ss_pred CCcee--eehhc-ChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHH
Confidence 33221 11222 232 222 121 1367999999999999964443
No 196
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.64 E-value=8.2e-05 Score=66.72 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=30.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecch
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~ 126 (215)
.|+|+|++|||||++|..||+.++..+++.|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 37899999999999999999999999999997
No 197
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.61 E-value=5e-05 Score=61.20 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=22.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCcee
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~l 122 (215)
+|+|+|.+|+||||+++.|++. |++++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 5899999999999999999998 99988
No 198
>PRK07933 thymidylate kinase; Validated
Probab=97.61 E-value=0.00051 Score=58.61 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
+.|.|.|+-||||||+++.|++.|.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999994
No 199
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.61 E-value=5.7e-05 Score=65.80 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=25.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
....++|.||||+||||+|+.+|++++..+.-+
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred CcceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence 346899999999999999999999999887543
No 200
>PF13173 AAA_14: AAA domain
Probab=97.60 E-value=8.4e-05 Score=57.88 Aligned_cols=39 Identities=28% Similarity=0.215 Sum_probs=33.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC----CceeecchhHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR----YYYFDSDSLVFE 130 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg----~~~ld~D~li~~ 130 (215)
+.+.++|.|+.|+||||+++.+++.+. +.+++.|+....
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~ 43 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDR 43 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHH
Confidence 467899999999999999999999876 778888876553
No 201
>PRK06761 hypothetical protein; Provisional
Probab=97.60 E-value=4.7e-05 Score=68.13 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=28.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecch
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~ 126 (215)
++.|+|+|+|||||||+++.|++.++...++.+.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 5689999999999999999999999865444443
No 202
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=3.9e-05 Score=71.57 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=55.8
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc--CCcEEEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
+.|.|+++ +.....=+.|.+++|..-=+.++-+ +=+.|+++||||+|||-+||++|.+.|-.|++.
T Consensus 209 ikW~DIag--l~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 209 IKWDDIAG--LHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred cChHhhcc--hHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 78999987 5555566788999988888888776 337899999999999999999999999998765
No 203
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.58 E-value=7.2e-05 Score=70.13 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=32.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecch
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~ 126 (215)
+....|+|+|+||+|||++|+.||+.++++|+..|.
T Consensus 106 ~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~ 141 (412)
T PRK05342 106 LQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA 141 (412)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence 356789999999999999999999999999987664
No 204
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.55 E-value=0.00014 Score=61.00 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=38.9
Q ss_pred ccccccCCCchhhHHHHHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhH
Q 028019 67 TVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLV 128 (215)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li 128 (215)
.+.++...+....- ..+.....-.+..|+|+|++|+|||++++.+++.+. +.+++.+++.
T Consensus 14 ~~~~~~~~~~~~~~--~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 14 FDNFYAGGNAELLA--ALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred hcCcCcCCcHHHHH--HHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 44555433333322 333333344677899999999999999999998763 4466665553
No 205
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=8.8e-05 Score=73.40 Aligned_cols=39 Identities=36% Similarity=0.451 Sum_probs=34.4
Q ss_pred hHhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 86 DISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 86 ~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
.+.+.++++.++|+||||.|||++|+.+|+++|..|+..
T Consensus 343 ~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 343 KLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred HHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence 344567999999999999999999999999999998754
No 206
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.52 E-value=0.00019 Score=64.06 Aligned_cols=107 Identities=14% Similarity=0.222 Sum_probs=63.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC-------ceeecchh------HHHHhC---CCchHHHHhhhhhHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRY-------YYFDSDSL------VFEAAG---GESAAKAFRESDEKGYQQAETE 155 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~-------~~ld~D~l------i~~~~G---~~si~e~~~~~ge~~fr~~e~~ 155 (215)
.+..|.|.|++|+||||+|+.|+..+.. ..+-+|-+ +++. | .+..++.|+..+ |.+.-.+
T Consensus 81 ~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~-glm~rKGfPeSyD~~~---ll~fl~~ 156 (283)
T COG1072 81 RPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDER-GLMARKGFPESYDVAA---LLRFLSD 156 (283)
T ss_pred CCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhc-cccccCCCCccccHHH---HHHHHHH
Confidence 5678889999999999999999998842 23444432 2221 1 012233333222 2221111
Q ss_pred HH-----------HHH-----------HcCCCeEEEeCCceeechHHHHhhc--CCcEEEEECCHHHHHhh
Q 028019 156 VL-----------KQL-----------SSMGRLVVCAGNGAVQSSANLALLR--HGISLWIDVPPGMVARM 202 (215)
Q Consensus 156 vL-----------~~L-----------~~~~~~VLa~G~g~Vl~~~~r~~L~--~g~vV~Ld~p~e~l~eR 202 (215)
+- .++ ....+.+|..|..+.+++..|-.+. .++.||+|++.+.+.+|
T Consensus 157 vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~w 227 (283)
T COG1072 157 VKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEER 227 (283)
T ss_pred HhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHH
Confidence 11 111 1123466667766666666555555 46999999999999998
No 207
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.52 E-value=0.00048 Score=64.45 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=32.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li 128 (215)
.-.+++|-||||+||||+|+.||+.+++.|...+...
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 5578899999999999999999999999998776553
No 208
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.51 E-value=0.00074 Score=57.90 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=25.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
+++-|.|-|.=||||||+++.|++.|.-.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~ 30 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEER 30 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 56789999999999999999999998543
No 209
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.49 E-value=9.9e-05 Score=64.37 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
....++|.|+||+||||+|+.+|+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999976
No 210
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.49 E-value=0.00014 Score=70.04 Aligned_cols=45 Identities=27% Similarity=0.265 Sum_probs=36.0
Q ss_pred hHHHHHHhHhhcc--------CCcEEEEEccCCCcHHHHHHHHHHHhCCceee
Q 028019 79 AVKKKAADISTEL--------KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (215)
Q Consensus 79 ~~~~~~~~~~~~l--------~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld 123 (215)
+-|+|.++|..-| +.+.++|+||+||||||..+.||+++|+.+.+
T Consensus 23 vhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 23 VHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred ccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 4566777776654 24567889999999999999999999987654
No 211
>PRK10646 ADP-binding protein; Provisional
Probab=97.47 E-value=0.00023 Score=58.45 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=34.8
Q ss_pred HHHHHHhHhhccC-CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 80 VKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 80 ~~~~~~~~~~~l~-~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
.+.-++.+.+.++ +..|+|.|.-|+||||++|.+++.||..
T Consensus 14 t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 14 TLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred HHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3446888888885 5678899999999999999999999963
No 212
>PHA02244 ATPase-like protein
Probab=97.45 E-value=0.00026 Score=65.83 Aligned_cols=43 Identities=28% Similarity=0.442 Sum_probs=35.2
Q ss_pred HhHhhcc-CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh
Q 028019 85 ADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (215)
Q Consensus 85 ~~~~~~l-~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l 127 (215)
..+...+ .+..|+|.|++|+|||++++.+|..++++|+..+.+
T Consensus 110 ~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 110 ADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 3444443 567799999999999999999999999999877654
No 213
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.44 E-value=0.00014 Score=68.27 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=30.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.+..|+|+||||+|||++|+.||+.++++|+-.|
T Consensus 115 ~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 115 SKSNILLIGPTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred CCceEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence 3568999999999999999999999998887555
No 214
>PRK09087 hypothetical protein; Validated
Probab=97.42 E-value=0.00028 Score=60.87 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=32.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~ 129 (215)
..+.++|.|++|||||++++.+++..+..|++.+++..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~ 80 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS 80 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch
Confidence 34569999999999999999999999999999865433
No 215
>PRK06620 hypothetical protein; Validated
Probab=97.40 E-value=0.00089 Score=57.24 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=27.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
..++|.|++|||||++++.+++..+..++...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~ 76 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDI 76 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchh
Confidence 67999999999999999999999887666543
No 216
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.0012 Score=56.76 Aligned_cols=37 Identities=24% Similarity=0.166 Sum_probs=30.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh-CCceeecchhHHHH
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEA 131 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L-g~~~ld~D~li~~~ 131 (215)
.|-|.|+..|||||||+.|.+.+ |..+++-|++++..
T Consensus 6 ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~ 43 (225)
T KOG3308|consen 6 IVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPE 43 (225)
T ss_pred EEEeecccCCCHhHHHHHHHHHccCCeeeccccccCch
Confidence 45577889999999999999998 57788888887654
No 217
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.39 E-value=0.00047 Score=56.61 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.1
Q ss_pred EEccCCCcHHHHHHHHHHHhCCc
Q 028019 98 LVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 98 LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
|-|+-||||||+++.|+++|...
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~ 23 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEK 23 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHc
Confidence 56999999999999999999533
No 218
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00011 Score=67.23 Aligned_cols=29 Identities=31% Similarity=0.210 Sum_probs=26.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
-.+.|+|.||||+|||++.|.||++|..+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 45788999999999999999999999755
No 219
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.38 E-value=0.00022 Score=65.90 Aligned_cols=28 Identities=21% Similarity=0.263 Sum_probs=25.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
+.+.++|+|||||||||+|+.|++.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5677899999999999999999999965
No 220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00054 Score=63.23 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=37.8
Q ss_pred HHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 83 ~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
...+++++..|++|+++||.|.|||.+||.||+-.|.||+-..
T Consensus 40 L~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVE 82 (444)
T COG1220 40 LEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVE 82 (444)
T ss_pred cCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 3456777889999999999999999999999999999997543
No 221
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=5.4e-05 Score=67.84 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=58.5
Q ss_pred cccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 58 SIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 58 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
-++|+.+ ++.-++++-|..+|+-.+.+-+..| +|+-+++.||||+|||-+|+.-|...+..|+-+
T Consensus 169 ~YsDiGG--ldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL 236 (424)
T KOG0652|consen 169 QYSDIGG--LDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKL 236 (424)
T ss_pred ccccccc--HHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHh
Confidence 5788887 8888999999999999999999987 889999999999999999999999998887643
No 222
>CHL00176 ftsH cell division protein; Validated
Probab=97.37 E-value=0.00013 Score=71.94 Aligned_cols=34 Identities=29% Similarity=0.297 Sum_probs=30.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.++.|+|.|+||+|||++|+.+|..++.+++..+
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is 248 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS 248 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeeecc
Confidence 4678999999999999999999999999988654
No 223
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.36 E-value=0.00022 Score=58.96 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=27.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhC--Cceeecc
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALR--YYYFDSD 125 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg--~~~ld~D 125 (215)
+.|+|+|+|||||||+|..++++++ +.|+.+.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 4689999999999999999999987 4456553
No 224
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.34 E-value=0.00025 Score=63.07 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=22.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+..++|+|+||+|||++|+.+|+.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4479999999999999999998876
No 225
>CHL00181 cbbX CbbX; Provisional
Probab=97.32 E-value=0.00022 Score=63.64 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..|+|.|+||+||||+|+.+|+.+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999976
No 226
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00012 Score=73.19 Aligned_cols=76 Identities=21% Similarity=0.081 Sum_probs=50.7
Q ss_pred CceeeecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc--h
Q 028019 52 PRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD--S 126 (215)
Q Consensus 52 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D--~ 126 (215)
-.++-+..+|.++ .+.-..++.|=+..=+-++ -.++| -|+-++|+||||+|||-+||++|.+-|.||+... +
T Consensus 303 ~~~t~V~FkDVAG--~deAK~El~E~V~fLKNP~-~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSE 379 (774)
T KOG0731|consen 303 EGNTGVKFKDVAG--VDEAKEELMEFVKFLKNPE-QYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSE 379 (774)
T ss_pred CCCCCCccccccC--cHHHHHHHHHHHHHhcCHH-HHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHH
Confidence 3444477778776 4444445555443322222 22222 6788999999999999999999999999998653 4
Q ss_pred hHHH
Q 028019 127 LVFE 130 (215)
Q Consensus 127 li~~ 130 (215)
+++-
T Consensus 380 FvE~ 383 (774)
T KOG0731|consen 380 FVEM 383 (774)
T ss_pred HHHH
Confidence 4443
No 227
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00057 Score=57.92 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=25.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
++..|+|.||+|+||||+.+.|=+..++.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~ 31 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLR 31 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeE
Confidence 67889999999999999999998877443
No 228
>PHA03132 thymidine kinase; Provisional
Probab=97.27 E-value=0.0022 Score=62.63 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=26.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~l 122 (215)
+...|+|-|..|+||||+++.|++.+|..++
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi 286 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVL 286 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCceE
Confidence 4788999999999999999999999854433
No 229
>PRK04195 replication factor C large subunit; Provisional
Probab=97.26 E-value=0.00029 Score=66.86 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=30.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++.++|.|+||+||||+++.||+.+++.++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ieln 71 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELN 71 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence 688999999999999999999999998887653
No 230
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.25 E-value=0.00035 Score=61.58 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=26.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCce
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYY 121 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ 121 (215)
++..++|+|+||+|||++++.+|+.++..+
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 346799999999999999999999998664
No 231
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.24 E-value=0.00035 Score=57.86 Aligned_cols=26 Identities=35% Similarity=0.370 Sum_probs=23.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
..++|+||+|+|||.+|+.||+.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46889999999999999999999995
No 232
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=97.23 E-value=0.0012 Score=58.66 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=55.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHc-CCC--eEEEe
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSS-MGR--LVVCA 170 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~-~~~--~VLa~ 170 (215)
..|+++|++|||||+-.+.| +-+||. ..|++-.+.. ++.. +. ...... +.. .++..
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlGyy--cvDNLPp~Ll-----p~~~---------~~----~~~~~~~~~kvAv~iDi 60 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLGYY--CVDNLPPQLL-----PKLA---------DL----MLTLESRITKVAVVIDV 60 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcCee--eecCCCHHHH-----HHHH---------HH----HhhcccCCceEEEEEec
Confidence 46889999999999999999 557774 4556544321 1111 10 001110 111 22222
Q ss_pred CCceeec--hHHHHhhc-C----CcEEEEECCHHHHHhh--hcCCCCCCCCC
Q 028019 171 GNGAVQS--SANLALLR-H----GISLWIDVPPGMVARM--DHSGFPESEVS 213 (215)
Q Consensus 171 G~g~Vl~--~~~r~~L~-~----g~vV~Ld~p~e~l~eR--~~rg~~~~~~~ 213 (215)
-++.... .+.+..++ . -.++||+++.+++.+| +-|-..|+...
T Consensus 61 Rs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~ 112 (286)
T COG1660 61 RSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSED 112 (286)
T ss_pred ccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCcc
Confidence 1111110 11222333 2 3589999999999999 67777776543
No 233
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=97.23 E-value=0.002 Score=59.27 Aligned_cols=105 Identities=19% Similarity=0.157 Sum_probs=65.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHH-hhhhhHHHHHHHHHHHHHHHc--CCCeEE
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAF-RESDEKGYQQAETEVLKQLSS--MGRLVV 168 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~-~~~ge~~fr~~e~~vL~~L~~--~~~~VL 168 (215)
+...+++.|+.|||||++...|++. |...+|+....+-. | .....+. .+.....| |..+...|.. ..+.|+
T Consensus 140 ~~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr-G-S~fG~~~~~qpsQ~~F---e~~l~~~l~~~~~~~~i~ 213 (345)
T PRK11784 140 QFPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR-G-SSFGRLGGPQPSQKDF---ENLLAEALLKLDPARPIV 213 (345)
T ss_pred cCceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc-c-ccccCCCCCCcchHHH---HHHHHHHHHcCCCCCeEE
Confidence 4456788999999999999999765 88899998876543 2 1111110 11112223 3343334433 123343
Q ss_pred EeCCc-----eeechHHHHhhcCCcEEEEECCHHHHHhh
Q 028019 169 CAGNG-----AVQSSANLALLRHGISLWIDVPPGMVARM 202 (215)
Q Consensus 169 a~G~g-----~Vl~~~~r~~L~~g~vV~Ld~p~e~l~eR 202 (215)
..+.+ +.+-..-++.|+.+.+|+|++|.+.+.+|
T Consensus 214 vE~Es~~IG~~~lP~~l~~~m~~~~~v~i~~~~e~Rv~~ 252 (345)
T PRK11784 214 VEDESRRIGRVHLPEALYEAMQQAPIVVVEAPLEERVER 252 (345)
T ss_pred EEeccccccCccCCHHHHHHHhhCCEEEEECCHHHHHHH
Confidence 33333 23334556777888999999999999999
No 234
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.23 E-value=0.00085 Score=56.86 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=31.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh-----CCceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L-----g~~~ld~D~li~ 129 (215)
....++|+|++|+|||++++.++..+ .+.+++.+....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~ 83 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL 83 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence 55789999999999999999999987 667788766543
No 235
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.0003 Score=58.68 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
...+|+++|+||+||||+.+.+++.|
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 35789999999999999999999877
No 236
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.22 E-value=0.00034 Score=62.94 Aligned_cols=32 Identities=22% Similarity=0.137 Sum_probs=28.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~l 122 (215)
-++..++|.|+||+|||++++.+|+.++..+.
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 34568999999999999999999999998654
No 237
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.22 E-value=0.00034 Score=65.25 Aligned_cols=42 Identities=14% Similarity=-0.013 Sum_probs=32.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc--hhHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD--SLVFEAAG 133 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D--~li~~~~G 133 (215)
.|..+.|.||||||||.+++.+|+++|+.++..+ ++.....|
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 4566667899999999999999999999976554 45544444
No 238
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00028 Score=70.07 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=33.7
Q ss_pred HhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 87 ~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
++...+++.++++||||.|||++||.+|++||..|+..
T Consensus 432 Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRf 469 (906)
T KOG2004|consen 432 LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRF 469 (906)
T ss_pred hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEE
Confidence 44456899999999999999999999999999998754
No 239
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.20 E-value=0.00048 Score=64.14 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=30.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecch
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~ 126 (215)
....++|.|+||+||||+|+.+|+.++..++..+.
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 45589999999999999999999999988876553
No 240
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.18 E-value=0.0018 Score=58.17 Aligned_cols=46 Identities=24% Similarity=0.190 Sum_probs=37.8
Q ss_pred HHHHHHhHhhcc---------CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 80 VKKKAADISTEL---------KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 80 ~~~~~~~~~~~l---------~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.|++.+=|..+| .|+.|++.||||+|||-+||.||.+...+++...
T Consensus 129 AK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vk 183 (368)
T COG1223 129 AKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVK 183 (368)
T ss_pred HHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEec
Confidence 455555555443 7899999999999999999999999999987654
No 241
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.17 E-value=0.0014 Score=59.15 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=30.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l 127 (215)
++.|+|+||.|||||.+|-.||++ +...++.|..
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 457999999999999999999999 5589999964
No 242
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.17 E-value=0.00047 Score=56.76 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=24.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
+++.|+|+||+||||+|+++.|.+.+.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 468899999999999999999999875
No 243
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=97.16 E-value=0.0041 Score=53.55 Aligned_cols=37 Identities=24% Similarity=0.180 Sum_probs=33.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
.+-|+|-.||||||+++.+- ++|++.+|.|.+..+..
T Consensus 3 iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv 39 (225)
T KOG3220|consen 3 IVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVV 39 (225)
T ss_pred EEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHh
Confidence 56799999999999999995 89999999999887754
No 244
>PF05729 NACHT: NACHT domain
Probab=97.15 E-value=0.00041 Score=54.44 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
+.++|.|.+|+||||+++.++..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 4689999999999999999998773
No 245
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.15 E-value=0.00034 Score=69.52 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=31.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.+.+.++|+|+||-||||+|..+|++-||.+++.+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEIN 358 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEIN 358 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEec
Confidence 45677889999999999999999999999999764
No 246
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.14 E-value=0.00048 Score=53.30 Aligned_cols=36 Identities=25% Similarity=0.109 Sum_probs=28.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~ 129 (215)
++..+.|+|++||||||+.+.+. -|-..++.|++..
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~~ 49 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI--KRKHRLVGDDNVE 49 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHHH
Confidence 35789999999999999999997 3445666666543
No 247
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.13 E-value=0.00059 Score=63.78 Aligned_cols=32 Identities=19% Similarity=0.017 Sum_probs=28.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceee
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld 123 (215)
..++|+|+|.+|||||||++.||+.+|..++.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 45789999999999999999999999987643
No 248
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.13 E-value=0.00061 Score=68.45 Aligned_cols=35 Identities=37% Similarity=0.448 Sum_probs=30.7
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 90 ~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
..+++.++|+||||+|||++|+.||+.++.+++..
T Consensus 344 ~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i 378 (775)
T TIGR00763 344 KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRF 378 (775)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEE
Confidence 34677899999999999999999999999887644
No 249
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.13 E-value=0.00085 Score=54.88 Aligned_cols=38 Identities=29% Similarity=0.262 Sum_probs=34.3
Q ss_pred HHHHhHhhcc-CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 82 KKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 82 ~~~~~~~~~l-~~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
.-++.+.+.+ ++..|+|.|.-||||||++|.+++.||.
T Consensus 13 ~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 13 ALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred HHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 4578888888 8899999999999999999999999984
No 250
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.12 E-value=0.00052 Score=62.31 Aligned_cols=39 Identities=15% Similarity=0.056 Sum_probs=31.9
Q ss_pred HhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 85 ~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
..+++.+ .+.|+|+|.+|+||||+++.|++.+|.+++.-
T Consensus 155 ~~~~~~~-~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E 193 (325)
T TIGR01526 155 REVRPFF-VKTVAILGGESTGKSTLVNKLAAVFNTTSAWE 193 (325)
T ss_pred HHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhCCCEEee
Confidence 3444444 45899999999999999999999999988654
No 251
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00023 Score=64.03 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=57.9
Q ss_pred cccccccccccccee-eeccC--Cceee--------ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEE
Q 028019 32 HSQSYAPIRTSLQYS-IISRK--PRITT--------RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVF 97 (215)
Q Consensus 32 ~~~~~~~~~~~~~~~-~~~~~--~~~~~--------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~ 97 (215)
.-|--+-=|+-.||. -+-|+ |+.++ +.++|+.+ --..+.-+.|-+.++..+-+-+-.| +|+-|+
T Consensus 138 egmrvgvdrnkyqi~lplppkidpsvtmm~veekpdvty~dvgg--ckeqieklrevve~pll~perfv~lgidppkgvl 215 (435)
T KOG0729|consen 138 EGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEKPDVTYSDVGG--CKEQIEKLREVVELPLLHPERFVNLGIDPPKGVL 215 (435)
T ss_pred hhheecccccceeEeccCCCCCCCceeEEEeecCCCcccccccc--hHHHHHHHHHHHhccccCHHHHhhcCCCCCCceE
Confidence 444444556666666 33333 55554 45555544 1112333445555555444444444 889999
Q ss_pred EEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 98 LVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 98 LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
+.||||+|||-+|+.+|.+.+.-|+..
T Consensus 216 lygppgtgktl~aravanrtdacfirv 242 (435)
T KOG0729|consen 216 LYGPPGTGKTLCARAVANRTDACFIRV 242 (435)
T ss_pred EeCCCCCchhHHHHHHhcccCceEEee
Confidence 999999999999999999999887653
No 252
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.10 E-value=0.00038 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=21.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC
Q 028019 96 VFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
|+|.|+||+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998775
No 253
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.10 E-value=0.0006 Score=65.99 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=38.5
Q ss_pred cCCCchhh-HHHHHHhHhhc----------cCCcEEEEEccCCCcHHHHHHHHHHHhCCceee
Q 028019 72 AAEDPSFA-VKKKAADISTE----------LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (215)
Q Consensus 72 ~~~~~~~~-~~~~~~~~~~~----------l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld 123 (215)
|...+.++ -|+|-.++..- ++.+.++|+||+||||||.-+.|++.+|+.++.
T Consensus 78 P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 78 PRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred cccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 34444443 35555555443 457789999999999999999999999988753
No 254
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.10 E-value=0.00042 Score=55.06 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=21.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC
Q 028019 96 VFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
|+|+|++||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999999864
No 255
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.00063 Score=61.68 Aligned_cols=36 Identities=28% Similarity=0.212 Sum_probs=33.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l 127 (215)
.++.|+|+||.+||||-+|-.||+++|...++.|..
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 467899999999999999999999999999999974
No 256
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00027 Score=66.59 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=59.9
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc--CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
+.|.++++ ++..-+.+.|.++++-..-+++..+ .++.++|.||||+|||-+++.+|.+.+..|++.-
T Consensus 150 v~~~di~g--l~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iS 218 (428)
T KOG0740|consen 150 VGWDDIAG--LEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNIS 218 (428)
T ss_pred ccccCCcc--hhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeecc
Confidence 78999987 7777889999999998888888887 6688999999999999999999999999998764
No 257
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.08 E-value=0.00059 Score=59.22 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=27.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l 127 (215)
+.++|+||.|+|||.+|-.||+++|++++..|.+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri 35 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRI 35 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecce
Confidence 4678999999999999999999999999999965
No 258
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.07 E-value=0.00059 Score=61.52 Aligned_cols=35 Identities=34% Similarity=0.339 Sum_probs=31.3
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceee
Q 028019 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (215)
Q Consensus 89 ~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld 123 (215)
..+.+..++|.|+||+|||++++.+|+.++++++.
T Consensus 39 a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 39 ALLAGGHVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred HHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 34688999999999999999999999999988753
No 259
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.07 E-value=0.00058 Score=56.43 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+|+|+|.||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998
No 260
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.06 E-value=0.00046 Score=57.41 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=29.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC-Cceeecchh
Q 028019 96 VFLVGMNNAIKTHLGKFLADALR-YYYFDSDSL 127 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~Lg-~~~ld~D~l 127 (215)
|+=++.+||||||+|..|++-+| |.++..|++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 45579999999999999999999 999999997
No 261
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.06 E-value=0.00081 Score=58.51 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=28.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCce-eecchhHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYY-FDSDSLVFE 130 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~-ld~D~li~~ 130 (215)
+.|.|+|+|||||||+|+.+.+ .|.++ +.+.+.+++
T Consensus 1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~ 37 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKE 37 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHH
Confidence 3689999999999999999965 47666 777665555
No 262
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.03 E-value=0.00059 Score=52.11 Aligned_cols=25 Identities=32% Similarity=0.212 Sum_probs=20.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
...++|+|++|+|||++++.+++.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999987
No 263
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.01 E-value=0.0039 Score=59.02 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=31.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---C--CceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D~li~ 129 (215)
+|..|+++|++|+||||++..||..+ | ..+++.|.+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 36789999999999999999999877 3 33678887644
No 264
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=97.00 E-value=0.0032 Score=55.64 Aligned_cols=61 Identities=11% Similarity=-0.018 Sum_probs=43.3
Q ss_pred CceeeecccCCCCccccccccCCCchhhHHHHHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 52 PRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 52 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
|..+.|+..++.. ..+-.+...+..+..+...-=...++-|.|+||+||||++..++++..
T Consensus 84 ~~~va~~~~~qv~------~~D~s~~de~y~~~~e~L~~n~~~l~glag~pGtgkst~~a~v~~aWp 144 (323)
T KOG2702|consen 84 PNKVAEMIENQVL------FKDHSEDDEFYPVKYEALTSNNEELTGLAGRPGTGKSTRIAAVDNAWP 144 (323)
T ss_pred hhHHHHHHHhccc------ccCcchhhhhhHHHHHHhcccchheeeeecCCCCcchhHHHHHHhhcc
Confidence 5556677777653 344444555555555555555678899999999999999999999754
No 265
>PRK05642 DNA replication initiation factor; Validated
Probab=97.00 E-value=0.01 Score=51.20 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=29.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh-----CCceeecchhHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVF 129 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L-----g~~~ld~D~li~ 129 (215)
...++|+|++|+|||.+++.++.++ ...|++.+++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 3678999999999999999998653 455788877654
No 266
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0015 Score=63.29 Aligned_cols=39 Identities=28% Similarity=0.228 Sum_probs=32.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeec-chhHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS-DSLVFEA 131 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~-D~li~~~ 131 (215)
|+-|+|+||||+|||-+||.+|-+.|.+|+.. ...+.++
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 57899999999999999999999999998754 3344444
No 267
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.99 E-value=0.00086 Score=54.39 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=27.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh---CC--ceeecchh
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSL 127 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L---g~--~~ld~D~l 127 (215)
.++++|+||+||||+++.++..+ |. .+++.|..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 57899999999999999999876 43 46888855
No 268
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.98 E-value=0.00053 Score=54.94 Aligned_cols=39 Identities=33% Similarity=0.332 Sum_probs=24.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeec----chhHHHHhC
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDS----DSLVFEAAG 133 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~----D~li~~~~G 133 (215)
.++|.|+||.||||+++.||+.+|..|-+. |-+.....|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G 43 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILG 43 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCccccee
Confidence 378999999999999999999999887543 444444444
No 269
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=96.98 E-value=0.0033 Score=55.16 Aligned_cols=104 Identities=19% Similarity=0.178 Sum_probs=54.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCC------ceeecchhHHHHhCCCchHHHHhhhhhHHHH-HHHHHHHHHHHcCCCe
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRY------YYFDSDSLVFEAAGGESAAKAFRESDEKGYQ-QAETEVLKQLSSMGRL 166 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~------~~ld~D~li~~~~G~~si~e~~~~~ge~~fr-~~e~~vL~~L~~~~~~ 166 (215)
..|+|+|.|.|||||.|+.|.++|.- .++.-|+- +|-..-..+-+...|...| .+...|-+.|.. +..
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des----lg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk-~~i 76 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES----LGIEKNSNYGDSQAEKALRGKLRSAVDRSLSK-GDI 76 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh----cCCCCcccccccHHHHHHHHHHHHHHHhhccc-CcE
Confidence 57899999999999999999998831 22333322 2200000111111233333 233344444543 334
Q ss_pred EEEeCCceeechHHHHh------hc-CCcEEEEECCHHHHHhhh
Q 028019 167 VVCAGNGAVQSSANLAL------LR-HGISLWIDVPPGMVARMD 203 (215)
Q Consensus 167 VLa~G~g~Vl~~~~r~~------L~-~g~vV~Ld~p~e~l~eR~ 203 (215)
||.. ..........++ ++ ...||+..+|.+.+.+-+
T Consensus 77 VI~D-slNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~N 119 (281)
T KOG3062|consen 77 VIVD-SLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWN 119 (281)
T ss_pred EEEe-cccccccceeeeeeehhccceeEEEEEecCCHHHHHHhc
Confidence 4422 222222222221 11 347899999999999863
No 270
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.98 E-value=0.0008 Score=62.59 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=27.3
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC--Cceeec
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDS 124 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg--~~~ld~ 124 (215)
+.++.|+|.|+||+|||.+|-.+|++|| .||+..
T Consensus 48 ~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 48 IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp -TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 4789999999999999999999999998 777554
No 271
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00088 Score=61.41 Aligned_cols=43 Identities=28% Similarity=0.378 Sum_probs=36.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG 133 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G 133 (215)
|..-+|+|+||.|||||-+|+-||+.|+.||-=.|.---.++|
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 6788999999999999999999999999999777754333333
No 272
>PRK12377 putative replication protein; Provisional
Probab=96.95 E-value=0.0019 Score=56.73 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=37.1
Q ss_pred HHHHHHhHhhcc--CCcEEEEEccCCCcHHHHHHHHHHHh---CC--ceeecchhHHH
Q 028019 80 VKKKAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLVFE 130 (215)
Q Consensus 80 ~~~~~~~~~~~l--~~~~I~LiG~pGSGKSTlAk~LA~~L---g~--~~ld~D~li~~ 130 (215)
+...++.+.... ....++|.|+||+|||.++..++..+ |. .|++..+++..
T Consensus 86 a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 86 ALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred HHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 334556665554 34689999999999999999999988 33 35666666554
No 273
>PF13245 AAA_19: Part of AAA domain
Probab=96.94 E-value=0.00096 Score=48.23 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=18.4
Q ss_pred CcEEEEEccCCCcHH-HHHHHHHHHh
Q 028019 93 GTSVFLVGMNNAIKT-HLGKFLADAL 117 (215)
Q Consensus 93 ~~~I~LiG~pGSGKS-TlAk~LA~~L 117 (215)
....+|.|+|||||| |+...++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 666777999999999 5555555544
No 274
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.90 E-value=0.00095 Score=54.52 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=30.4
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l 127 (215)
..++-|+|+|++|+||||++..|.++ |+.++.=|.+
T Consensus 12 ~~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~v 47 (149)
T cd01918 12 VGGIGVLITGPSGIGKSELALELIKR-GHRLVADDRV 47 (149)
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCEE
Confidence 36788999999999999999999886 8888865544
No 275
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.88 E-value=0.0091 Score=58.80 Aligned_cols=64 Identities=22% Similarity=0.179 Sum_probs=41.3
Q ss_pred ccccccCCCchhhHHHHHHhHhhccC--CcEEEEEccCCCcHHHHHHHHHHHh-----C--CceeecchhHHHH
Q 028019 67 TVTKVAAEDPSFAVKKKAADISTELK--GTSVFLVGMNNAIKTHLGKFLADAL-----R--YYYFDSDSLVFEA 131 (215)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~I~LiG~pGSGKSTlAk~LA~~L-----g--~~~ld~D~li~~~ 131 (215)
.++++..-...+++ .-++.+..... ...++|+|.+|+|||.|++.++..+ | ..|++.+++..+.
T Consensus 287 FDnFvvG~sN~~A~-aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 287 FDTFVIGASNRFAH-AAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred HhhhcCCCccHHHH-HHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 45555444433333 24445544432 2349999999999999999999976 2 3578887766543
No 276
>PLN03025 replication factor C subunit; Provisional
Probab=96.87 E-value=0.0016 Score=58.40 Aligned_cols=31 Identities=26% Similarity=0.134 Sum_probs=25.6
Q ss_pred HhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 87 ~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+...-+.+.++|.|+||+||||+++.+|+++
T Consensus 28 ~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 28 IARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3333445578999999999999999999997
No 277
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.87 E-value=0.00089 Score=53.81 Aligned_cols=28 Identities=29% Similarity=0.250 Sum_probs=19.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
-.++.++|+|++|+|||++.+.+.+.+.
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998888774
No 278
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.85 E-value=0.00094 Score=72.27 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=32.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeec--chhH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLV 128 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~--D~li 128 (215)
.++-|+|+||||+|||.+||.||...+++++.. ++++
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl 1667 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFL 1667 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHh
Confidence 688999999999999999999999999998644 4444
No 279
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.82 E-value=0.0052 Score=58.07 Aligned_cols=37 Identities=24% Similarity=0.146 Sum_probs=29.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh----C--CceeecchhHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL----R--YYYFDSDSLVF 129 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L----g--~~~ld~D~li~ 129 (215)
+..|+++|++|+||||++..||..+ | ..+++.|.+..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 6789999999999999998888774 3 34689996544
No 280
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.81 E-value=0.001 Score=51.42 Aligned_cols=26 Identities=42% Similarity=0.393 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 67899999999999999999997765
No 281
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.81 E-value=0.002 Score=57.12 Aligned_cols=25 Identities=24% Similarity=0.180 Sum_probs=22.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
+.++|+|+||+||||+++.+++.+.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3699999999999999999999884
No 282
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.80 E-value=0.0011 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
.++|+|+|+.|||||||++.|-.
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcC
Confidence 47899999999999999999965
No 283
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00046 Score=62.94 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=57.7
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCcee--ecchhHHHH
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEA 131 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~l--d~D~li~~~ 131 (215)
.|+.+..+ +---++++.|.++|+...-+|+..+ +|+.+.|.|+||.|||.+|+.+|..+|..|+ .+..+....
T Consensus 129 ~s~~~~gg--l~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 129 ISFENVGG--LFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cCHHHhCC--hHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 45556554 4455778899999999999999985 6666778899999999999999999998875 344455444
Q ss_pred hC
Q 028019 132 AG 133 (215)
Q Consensus 132 ~G 133 (215)
.|
T Consensus 207 iG 208 (388)
T KOG0651|consen 207 IG 208 (388)
T ss_pred cc
Confidence 44
No 284
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.80 E-value=0.0016 Score=54.17 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=32.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---C--CceeecchhHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAA 132 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D~li~~~~ 132 (215)
++..++|.|++|+|||.+|..++.++ | ..|++.++++.+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 67899999999999999999999865 3 45788888887653
No 285
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.80 E-value=0.0018 Score=63.91 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=29.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++.|+|+|+||+|||++++.+|.+++.+++..+
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is 217 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 217 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 466999999999999999999999999987654
No 286
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.79 E-value=0.0012 Score=55.73 Aligned_cols=38 Identities=24% Similarity=0.162 Sum_probs=31.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFE 130 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li~~ 130 (215)
|+.|+|+||+|+||||.+..||.++. ..++..|.++-.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~g 43 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIG 43 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCcc
Confidence 57899999999999999999998873 447888877543
No 287
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.79 E-value=0.0013 Score=56.60 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=23.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
+..++|+|++|+||||+++.+++.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44789999999999999999999876
No 288
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.78 E-value=0.018 Score=49.32 Aligned_cols=63 Identities=24% Similarity=0.272 Sum_probs=40.8
Q ss_pred ccccccCCCchhhHHHHHHhHhhccCC--cEEEEEccCCCcHHHHHHHHHHHh-----C--CceeecchhHHH
Q 028019 67 TVTKVAAEDPSFAVKKKAADISTELKG--TSVFLVGMNNAIKTHLGKFLADAL-----R--YYYFDSDSLVFE 130 (215)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~I~LiG~pGSGKSTlAk~LA~~L-----g--~~~ld~D~li~~ 130 (215)
-++++..-.-..++ ..++.+...... ..++|.|++|+|||.+.+.++.++ + +.|++.+++..+
T Consensus 7 Fdnfv~g~~N~~a~-~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~ 78 (219)
T PF00308_consen 7 FDNFVVGESNELAY-AAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE 78 (219)
T ss_dssp CCCS--TTTTHHHH-HHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred cccCCcCCcHHHHH-HHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence 44555543333443 356667666432 468999999999999999998765 2 347777776544
No 289
>PLN02796 D-glycerate 3-kinase
Probab=96.78 E-value=0.0014 Score=60.27 Aligned_cols=38 Identities=13% Similarity=-0.034 Sum_probs=30.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li~ 129 (215)
++..|.|+|++||||||+++.|+..+. ...+..|++..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 456688999999999999999999885 34567777653
No 290
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.77 E-value=0.0016 Score=54.23 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=29.6
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh---C--Cceeecch
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D~ 126 (215)
.++..+.|+|+||||||+++..++... | ..|++++.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 367888999999999999999998654 3 55788875
No 291
>PRK09183 transposase/IS protein; Provisional
Probab=96.76 E-value=0.0017 Score=57.00 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=28.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CC--ceeecchhH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLV 128 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g~--~~ld~D~li 128 (215)
.+..++|+|++|+|||+++..++..+ |+ .|++..+++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 57789999999999999999997664 43 355655554
No 292
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.76 E-value=0.0015 Score=57.95 Aligned_cols=31 Identities=13% Similarity=-0.013 Sum_probs=25.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceee
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld 123 (215)
+..++|+|++|+|||++++.+++.++..++.
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~~~ 73 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEVLF 73 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccceE
Confidence 3455568999999999999999998766543
No 293
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.75 E-value=0.0014 Score=65.86 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=28.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
..++|+||+|+|||++|+.||+.++.+++..|
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id 520 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFD 520 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEee
Confidence 36899999999999999999999998876544
No 294
>PLN02772 guanylate kinase
Probab=96.75 E-value=0.0055 Score=57.37 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
..+.|+|+||+|+||+||.+.|.+.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 34689999999999999999998865
No 295
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.75 E-value=0.0012 Score=51.20 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=26.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC-----CceeecchhHH
Q 028019 96 VFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li~ 129 (215)
++|+|+||+||||+++.++..+. ..|++.+....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 68999999999999999988873 33666655443
No 296
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.75 E-value=0.009 Score=52.35 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=33.5
Q ss_pred HHHhHhhccC--CcEEEEEccCCCcHHHHHHHHHHHh---CCc--eeecchhHHH
Q 028019 83 KAADISTELK--GTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLVFE 130 (215)
Q Consensus 83 ~~~~~~~~l~--~~~I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D~li~~ 130 (215)
.++....... ...++|.|++|+|||+++..++..+ |.. +++..+++..
T Consensus 87 ~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 87 KARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred HHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 4444444432 2579999999999999999999988 333 4565555543
No 297
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.75 E-value=0.0017 Score=54.59 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=29.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh---C--Cceeecch
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D~ 126 (215)
.++..+.|.|+|||||||++..+|... | ..|++++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 367888899999999999999999765 2 33787764
No 298
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.74 E-value=0.0012 Score=57.21 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=26.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF 129 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~ 129 (215)
+..++|+|+||+||||+|+.|+. ...+++.|....
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~ 46 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSK 46 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccch
Confidence 46799999999999999999973 255666665433
No 299
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.71 E-value=0.0022 Score=53.96 Aligned_cols=37 Identities=19% Similarity=0.083 Sum_probs=31.1
Q ss_pred HHHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 82 KKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 82 ~~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
.+.+++...=..+.|.|+|++||||||+-+.+.++++
T Consensus 11 ~~~~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 11 EKNRERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHHHHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3556666666789999999999999999999998865
No 300
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.71 E-value=0.0015 Score=56.94 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=21.9
Q ss_pred EEccCCCcHHHHHHHHHHHhCCc-----eeecchh
Q 028019 98 LVGMNNAIKTHLGKFLADALRYY-----YFDSDSL 127 (215)
Q Consensus 98 LiG~pGSGKSTlAk~LA~~Lg~~-----~ld~D~l 127 (215)
++||+||||||+.+.+.+.+... .+++|--
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence 68999999999999999988533 4555543
No 301
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.69 E-value=0.0014 Score=55.43 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..|.|+||+||||||+-|.+|.-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 78899999999999999999998853
No 302
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.68 E-value=0.0034 Score=56.37 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=24.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
....|+|+|++||||||+.+.|.+.+
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999886
No 303
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0015 Score=57.53 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++.++-|+|.+||||||+++.|+--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 78999999999999999999998643
No 304
>PRK13695 putative NTPase; Provisional
Probab=96.68 E-value=0.0018 Score=52.82 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=21.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++|+|+|.+|+||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999988776
No 305
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.68 E-value=0.0016 Score=54.44 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998654
No 306
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.68 E-value=0.0016 Score=54.42 Aligned_cols=26 Identities=38% Similarity=0.411 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 68889999999999999999998764
No 307
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.67 E-value=0.0016 Score=54.69 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 77899999999999999999998764
No 308
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.67 E-value=0.002 Score=57.20 Aligned_cols=37 Identities=24% Similarity=0.189 Sum_probs=29.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh----C---CceeecchhH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL----R---YYYFDSDSLV 128 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L----g---~~~ld~D~li 128 (215)
++..|.|+|++|+||||++..||..+ | ..+++.|.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 45689999999999999999999866 3 2368888754
No 309
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.66 E-value=0.0019 Score=61.47 Aligned_cols=34 Identities=26% Similarity=0.195 Sum_probs=28.2
Q ss_pred hHhhcc-CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 86 DISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 86 ~~~~~l-~~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
.+...| .++.|+|.|+||+|||++|+.||..++.
T Consensus 186 ~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 186 TILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344443 6889999999999999999999998853
No 310
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.65 E-value=0.0017 Score=54.54 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 68899999999999999999998765
No 311
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.65 E-value=0.0017 Score=53.54 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999998654
No 312
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.65 E-value=0.0014 Score=64.15 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=25.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
+.+.++|+||||+||||+|+.||+.+.
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHH
Confidence 678999999999999999999999884
No 313
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0016 Score=56.74 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=25.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh----CCceeec
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL----RYYYFDS 124 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L----g~~~ld~ 124 (215)
++..+.|+||+||||||+-|.|..-- |-.+++.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g 63 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG 63 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC
Confidence 67889999999999999999995421 3445555
No 314
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.65 E-value=0.0017 Score=54.36 Aligned_cols=26 Identities=50% Similarity=0.534 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 77899999999999999999998754
No 315
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.64 E-value=0.0019 Score=53.47 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=24.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
.+..++|+|++||||||+.+.|...+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 678899999999999999999988763
No 316
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.64 E-value=0.002 Score=64.97 Aligned_cols=33 Identities=36% Similarity=0.434 Sum_probs=29.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceee
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld 123 (215)
.++..|+|+||||+||||+++.+|+.++.+++.
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~ 379 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 467889999999999999999999999988753
No 317
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.63 E-value=0.0024 Score=63.91 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=30.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l 127 (215)
....++|.|+||+||||+|+.+|+.++..++..+..
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 446789999999999999999999998887766654
No 318
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.63 E-value=0.0017 Score=55.21 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 77889999999999999999998754
No 319
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.63 E-value=0.0018 Score=54.12 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 67889999999999999999998754
No 320
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.62 E-value=0.0019 Score=53.98 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999998754
No 321
>PRK08181 transposase; Validated
Probab=96.62 E-value=0.0026 Score=56.50 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=32.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---C--CceeecchhHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEA 131 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D~li~~~ 131 (215)
.+..++|+|++|+|||.++..++.++ | ..|++..+++.+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 66789999999999999999999755 4 4467777776653
No 322
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.0019 Score=54.13 Aligned_cols=26 Identities=27% Similarity=0.269 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998754
No 323
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0019 Score=54.99 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999999998654
No 324
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.0033 Score=60.05 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
+..++|+||||+||||+|+.+|+.++.
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 345899999999999999999999875
No 325
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.59 E-value=0.0018 Score=54.40 Aligned_cols=26 Identities=42% Similarity=0.396 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 77899999999999999999998654
No 326
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.59 E-value=0.0018 Score=55.08 Aligned_cols=26 Identities=35% Similarity=0.296 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 77889999999999999999998654
No 327
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.0036 Score=57.42 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
+..++|+|++|+||||+|+.+|+.++.
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 345789999999999999999999874
No 328
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.58 E-value=0.0018 Score=54.25 Aligned_cols=26 Identities=35% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 67899999999999999999998754
No 329
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.58 E-value=0.002 Score=54.44 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=24.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 78899999999999999999999876
No 330
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.002 Score=54.31 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998754
No 331
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.58 E-value=0.0023 Score=52.93 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=28.0
Q ss_pred HhHhhccCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 85 ~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
.++...++++.++|+|++|+||||+...|...
T Consensus 27 ~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 27 EELKELLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46777888999999999999999999998554
No 332
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.58 E-value=0.002 Score=54.97 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 77899999999999999999998654
No 333
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.57 E-value=0.0021 Score=53.96 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhC
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
.|+|+|++||||||+.+.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999888774
No 334
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.0034 Score=60.20 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
+..++|+|++|+||||+|+.||+.++..
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 3458999999999999999999999864
No 335
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0011 Score=65.99 Aligned_cols=75 Identities=16% Similarity=0.090 Sum_probs=59.0
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc--hhHHHH
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD--SLVFEA 131 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D--~li~~~ 131 (215)
.-|.|+++ +......+.+....|.|--.|+... ...-|+|.||||||||-+|..+|...++.|++.. ++....
T Consensus 664 i~w~digg--~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 664 IRWEDIGG--LFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCceeccc--HHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 56777776 5555666777888888888888874 5678999999999999999999999999998763 444444
Q ss_pred hC
Q 028019 132 AG 133 (215)
Q Consensus 132 ~G 133 (215)
.|
T Consensus 742 IG 743 (952)
T KOG0735|consen 742 IG 743 (952)
T ss_pred hc
Confidence 44
No 336
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.56 E-value=0.0023 Score=60.42 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=30.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh---CC--ceeecchhH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLV 128 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L---g~--~~ld~D~li 128 (215)
+..|+|+|++|+||||.+..||..+ |. .+++.|.+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 5789999999999999999999877 43 468888765
No 337
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.56 E-value=0.0023 Score=54.95 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=25.3
Q ss_pred HHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 83 ~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+|-+|... .+..|+|+|+||+|||++|+.+...|
T Consensus 13 rAL~iAAa-G~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 13 RALEIAAA-GGHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp HHHHHHHH-CC--EEEES-CCCTHHHHHHHHHHCS
T ss_pred HHHHHHHc-CCCCeEEECCCCCCHHHHHHHHHHhC
Confidence 55555555 45799999999999999999999865
No 338
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.56 E-value=0.0041 Score=51.21 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=24.8
Q ss_pred HHHhHhhccCCcE-EEEEccCCCcHHHHHHHHHHHh
Q 028019 83 KAADISTELKGTS-VFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 83 ~~~~~~~~l~~~~-I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+.+.+...+.... .+|.||||+|||++...+...+
T Consensus 6 Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHh
Confidence 3455666676665 7788999999998777766666
No 339
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.56 E-value=0.0021 Score=53.60 Aligned_cols=26 Identities=42% Similarity=0.496 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999998754
No 340
>PRK06526 transposase; Provisional
Probab=96.56 E-value=0.0022 Score=56.35 Aligned_cols=40 Identities=20% Similarity=0.101 Sum_probs=30.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eeecchhHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLVFEA 131 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D~li~~~ 131 (215)
.+..++|+|+||+|||+++..|+.++ |+. |+...+++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l 141 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARL 141 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence 56789999999999999999998865 333 45555555443
No 341
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.55 E-value=0.0022 Score=53.66 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999999765
No 342
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0018 Score=61.33 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=28.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
+-.+|.||||+|||++-.++|..|++-++|++
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLe 267 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLE 267 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceEEee
Confidence 56789999999999999999999999887663
No 343
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0021 Score=54.51 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999998765
No 344
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.54 E-value=0.0022 Score=53.23 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999998754
No 345
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.54 E-value=0.0037 Score=44.22 Aligned_cols=31 Identities=29% Similarity=0.226 Sum_probs=26.0
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCceeecch
Q 028019 96 VFLVGMNNAIKTHLGKFLADAL---RYYYFDSDS 126 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~L---g~~~ld~D~ 126 (215)
|++.|..|+||||++..||..+ |+..+-.|+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~d 35 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDD 35 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECC
Confidence 6789999999999999999998 666655553
No 346
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.54 E-value=0.0022 Score=53.90 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999998754
No 347
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0023 Score=52.21 Aligned_cols=26 Identities=42% Similarity=0.351 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998754
No 348
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.53 E-value=0.0023 Score=53.80 Aligned_cols=26 Identities=42% Similarity=0.376 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 67789999999999999999998754
No 349
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.52 E-value=0.0026 Score=47.68 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+|+++|.+|+|||||-+.|....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 350
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.52 E-value=0.0039 Score=60.10 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=25.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
+..++|+|++|+||||+|+.+|+.++..
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4579999999999999999999999864
No 351
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.0022 Score=60.56 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=30.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh----C--CceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL----R--YYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L----g--~~~ld~D~li~ 129 (215)
++..|+|+|++|+||||++..||..+ | ..+++.|.+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 45678999999999999999999765 2 44688887544
No 352
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.51 E-value=0.0039 Score=56.37 Aligned_cols=47 Identities=26% Similarity=0.198 Sum_probs=37.0
Q ss_pred CCchhhHHHHHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCce
Q 028019 74 EDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYY 121 (215)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ 121 (215)
+.+.+.+-++|...+++- .-.++|.||||-||||+|..+|.++|..+
T Consensus 34 vk~~L~ifI~AAk~r~e~-lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 34 VKEQLQIFIKAAKKRGEA-LDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred HHHHHHHHHHHHHhcCCC-cCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 455566666777766653 34689999999999999999999998765
No 353
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0024 Score=53.85 Aligned_cols=26 Identities=38% Similarity=0.337 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998754
No 354
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.51 E-value=0.0039 Score=62.34 Aligned_cols=34 Identities=26% Similarity=0.228 Sum_probs=29.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh----------CCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L----------g~~~ld~D 125 (215)
...+++|+|+||+|||++++.||+++ +..++..|
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 56689999999999999999999998 66676666
No 355
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.50 E-value=0.0028 Score=50.78 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=21.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++|.++|+.+|||||+++.|...|
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998877
No 356
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.49 E-value=0.0025 Score=52.91 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 77899999999999999999998865
No 357
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.49 E-value=0.0025 Score=54.39 Aligned_cols=26 Identities=35% Similarity=0.318 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999999998654
No 358
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.0026 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 77889999999999999999998653
No 359
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.48 E-value=0.0025 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 67889999999999999999998754
No 360
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.0025 Score=54.49 Aligned_cols=26 Identities=31% Similarity=0.315 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998754
No 361
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.48 E-value=0.0024 Score=54.33 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..+.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999999875
No 362
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.48 E-value=0.0024 Score=54.06 Aligned_cols=26 Identities=38% Similarity=0.365 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999998754
No 363
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.47 E-value=0.0025 Score=53.93 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998654
No 364
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.47 E-value=0.0026 Score=54.40 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999998654
No 365
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.46 E-value=0.0029 Score=52.84 Aligned_cols=27 Identities=26% Similarity=0.039 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
.+..+.|+|++||||||+.+.|...|.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 456788999999999999999998774
No 366
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.46 E-value=0.004 Score=55.63 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=27.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CC--ceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g~--~~ld~D 125 (215)
.+..|.|+|++||||||+...|+..+ |+ .+++.|
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 67889999999999999999998876 33 356666
No 367
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.46 E-value=0.0027 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=24.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 78899999999999999999998764
No 368
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.0026 Score=52.83 Aligned_cols=24 Identities=42% Similarity=0.357 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
++..+.|+|++||||||+.+.|+-
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 678899999999999999999985
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.46 E-value=0.0028 Score=57.57 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=29.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---C--Cceeecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D~l 127 (215)
++..|.|+|++|+||||++..||..+ | ..+++.|..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 46789999999999999999999987 3 335777764
No 370
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.44 E-value=0.0027 Score=54.44 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 77889999999999999999998754
No 371
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0015 Score=67.22 Aligned_cols=65 Identities=11% Similarity=0.008 Sum_probs=56.4
Q ss_pred CceeeecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 52 PRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 52 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
.....++|.++++ ++.+++.+.|.+.++...=+++..+ +|+-+++.|+||+|||.+|+.||....
T Consensus 257 ~~~~~v~fd~vgg--l~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s 324 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGG--LENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACS 324 (1080)
T ss_pred hhhcccCcccccc--HHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhc
Confidence 3444588999998 8899999999999998888888863 677799999999999999999999873
No 372
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.43 E-value=0.0028 Score=54.42 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 77889999999999999999998754
No 373
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.43 E-value=0.0027 Score=53.41 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999998754
No 374
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.43 E-value=0.0034 Score=49.91 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.0
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 89 ~~l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+..+...|.|+|++|+||||+.+.+...
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 4456788999999999999999999764
No 375
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.43 E-value=0.0033 Score=52.01 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=23.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCc--eeec
Q 028019 96 VFLVGMNNAIKTHLGKFLADALRYY--YFDS 124 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~Lg~~--~ld~ 124 (215)
++|+|.+|||||++|..++...+-+ |+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 7899999999999999999886633 4444
No 376
>PRK10867 signal recognition particle protein; Provisional
Probab=96.42 E-value=0.0029 Score=59.80 Aligned_cols=38 Identities=26% Similarity=0.243 Sum_probs=29.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh----CC--ceeecchhHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL----RY--YYFDSDSLVFE 130 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L----g~--~~ld~D~li~~ 130 (215)
+..|+++|++||||||++..||..+ |. .+++.|.+...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 6788999999999999888887755 43 46899976543
No 377
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0025 Score=53.26 Aligned_cols=25 Identities=40% Similarity=0.320 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++ .+.|+|++||||||+.+.|+..+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 35 88999999999999999998654
No 378
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.42 E-value=0.0029 Score=53.12 Aligned_cols=26 Identities=38% Similarity=0.323 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 67889999999999999999998754
No 379
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.42 E-value=0.04 Score=51.84 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=41.2
Q ss_pred ccccccCCCchhhHHHHHHhHhhcc--CCcEEEEEccCCCcHHHHHHHHHHHh-----C--CceeecchhHHH
Q 028019 67 TVTKVAAEDPSFAVKKKAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADAL-----R--YYYFDSDSLVFE 130 (215)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~I~LiG~pGSGKSTlAk~LA~~L-----g--~~~ld~D~li~~ 130 (215)
.++++..-....++ .-++.+.... ....++|.|++|+|||++++.++.++ + ..|++.+++..+
T Consensus 121 fd~fv~g~~n~~a~-~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 121 FDNFVVGKSNRLAH-AAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND 192 (450)
T ss_pred ccccccCCCcHHHH-HHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 55655543333333 3455555443 22569999999999999999999987 3 336677665443
No 380
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.41 E-value=0.0029 Score=52.75 Aligned_cols=26 Identities=31% Similarity=0.255 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 67889999999999999999998654
No 381
>PRK13768 GTPase; Provisional
Probab=96.41 E-value=0.0038 Score=54.55 Aligned_cols=35 Identities=34% Similarity=0.349 Sum_probs=27.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh---CCc--eeecchh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSL 127 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D~l 127 (215)
+..|++.|++|+||||++..++..+ |.. ++|.|.-
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 4678999999999999999998877 333 6677643
No 382
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.41 E-value=0.0034 Score=59.51 Aligned_cols=38 Identities=16% Similarity=-0.004 Sum_probs=30.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li~ 129 (215)
++..|.|.|++||||||+++.|...+. ...+..|++..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL 253 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL 253 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence 567778999999999999999988773 34578887763
No 383
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.41 E-value=0.0031 Score=51.61 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 78899999999999999999998764
No 384
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.41 E-value=0.0029 Score=54.38 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 67889999999999999999998764
No 385
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.41 E-value=0.003 Score=53.68 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 68899999999999999999998754
No 386
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.41 E-value=0.0029 Score=55.05 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999998754
No 387
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.41 E-value=0.0031 Score=55.89 Aligned_cols=36 Identities=28% Similarity=0.267 Sum_probs=29.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eeecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D~l 127 (215)
+++.|.++|++|+||||++..||..+ |.. +++.|.+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 45788999999999999999999877 433 5888864
No 388
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.41 E-value=0.0028 Score=53.72 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=24.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
++..+.|+|++||||||+.+.|+..+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 778899999999999999999987654
No 389
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.40 E-value=0.016 Score=52.55 Aligned_cols=105 Identities=18% Similarity=0.129 Sum_probs=63.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHH--hhhhhHHHHHHHHHHHHHHHc--C-CCe
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAF--RESDEKGYQQAETEVLKQLSS--M-GRL 166 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~--~~~ge~~fr~~e~~vL~~L~~--~-~~~ 166 (215)
+...+.+.|+.|+|||.+.+.|++. |+.++|+.....-. | .....+- .+.....| |..+...+.. . ...
T Consensus 126 ~~~~~vl~g~tg~gKt~Ll~~L~~~-~~~VvDlr~~a~hr-G-s~fG~~~~~~qpsq~~f---e~~L~~~l~~~~~~~~i 199 (311)
T TIGR03167 126 PFPLIVLGGMTGSGKTELLHALANA-GAQVLDLEGLANHR-G-SSFGALGLGPQPSQKRF---ENALAEALRRLDPGRPI 199 (311)
T ss_pred CCceeccCCCCCcCHHHHHHHHhcC-CCeEEECCchHHhc-C-cccCCCCCCCCCchHHH---HHHHHHHHHhCCCCceE
Confidence 3345668899999999999999876 88899998765432 2 1100000 00111334 3343333432 2 234
Q ss_pred EEEeCCcee----echHHHHhhcCCcEEEEECCHHHHHhh
Q 028019 167 VVCAGNGAV----QSSANLALLRHGISLWIDVPPGMVARM 202 (215)
Q Consensus 167 VLa~G~g~V----l~~~~r~~L~~g~vV~Ld~p~e~l~eR 202 (215)
++.+.+..+ +...-++.|+.+.+|+|++|.+.+.+|
T Consensus 200 ~~e~es~~ig~~~~p~~l~~~m~~~~~i~i~~~~e~Rv~~ 239 (311)
T TIGR03167 200 FVEDESRRIGRVALPDALFEAMRAAPLVELEASLEERVER 239 (311)
T ss_pred EEEeCchhhccccCCHHHHHHHhhCCEEEEECCHHHHHHH
Confidence 444332222 223356677788999999999999999
No 390
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.40 E-value=0.003 Score=54.39 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 77899999999999999999999653
No 391
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0012 Score=59.06 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=54.8
Q ss_pred ccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCcee--ecchhHHHHhC
Q 028019 67 TVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG 133 (215)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~l--d~D~li~~~~G 133 (215)
++.-+.++.|-..||.|+-+++..| .|+-++|.||||.|||-+|+.+|.+..+.|+ +..+++....|
T Consensus 152 Ld~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ig 223 (404)
T KOG0728|consen 152 LDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIG 223 (404)
T ss_pred HHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhh
Confidence 4445556677778999999999997 8999999999999999999999999988875 44566665544
No 392
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.40 E-value=0.003 Score=55.95 Aligned_cols=37 Identities=30% Similarity=0.310 Sum_probs=30.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh----CCceeecchhH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL----RYYYFDSDSLV 128 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L----g~~~ld~D~li 128 (215)
++..+.|+||.||||||+-|.|+.-+ |-.++|..++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~ 67 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA 67 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence 67889999999999999999999966 44567665543
No 393
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.39 E-value=0.003 Score=52.62 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 67899999999999999999998654
No 394
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.39 E-value=0.003 Score=53.49 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 67889999999999999999998654
No 395
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.39 E-value=0.0032 Score=51.20 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 78899999999999999999998765
No 396
>PHA03136 thymidine kinase; Provisional
Probab=96.39 E-value=0.023 Score=52.91 Aligned_cols=27 Identities=22% Similarity=0.122 Sum_probs=22.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
-.+|+|-|+.|+||||+++.|.+.-++
T Consensus 36 ~~rvyieG~~gvGKTT~~~~l~~~~~~ 62 (378)
T PHA03136 36 LVLLYLDGPFGTGKTTTAKLLMEMPDT 62 (378)
T ss_pred eEEEEEECCCcCCHHHHHHHHHhcccc
Confidence 458999999999999999999884333
No 397
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.39 E-value=0.003 Score=53.90 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999998754
No 398
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.39 E-value=0.0032 Score=62.94 Aligned_cols=31 Identities=35% Similarity=0.293 Sum_probs=26.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.++|+||+|+|||++|+.||+.++..++..|
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d 516 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFD 516 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEe
Confidence 5789999999999999999999987655443
No 399
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.38 E-value=0.019 Score=53.97 Aligned_cols=41 Identities=22% Similarity=0.084 Sum_probs=33.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC-------CceeecchhHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLVFEA 131 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg-------~~~ld~D~li~~~ 131 (215)
.+++.|.|+||.|.||||--..||.++. ..++.+|.++...
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA 248 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGA 248 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhH
Confidence 3588999999999999987777777765 4589999987543
No 400
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.38 E-value=0.0031 Score=54.74 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 78899999999999999999999764
No 401
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.38 E-value=0.0031 Score=53.87 Aligned_cols=26 Identities=31% Similarity=0.213 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 78889999999999999999998764
No 402
>PRK10908 cell division protein FtsE; Provisional
Probab=96.37 E-value=0.0032 Score=53.14 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999998654
No 403
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.37 E-value=0.004 Score=52.64 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=28.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHH-----------hCCceeecch
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADA-----------LRYYYFDSDS 126 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~-----------Lg~~~ld~D~ 126 (215)
.++..+.|+|+||||||+++..++.. -+..|++++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 36788899999999999999999854 2344677655
No 404
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.37 E-value=0.0066 Score=55.34 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=24.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
-.+..++|+|+||+|||++.+.+++.+
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999877
No 405
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.37 E-value=0.0027 Score=60.57 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.-.-|++.|+||+||||||+.||+-+
T Consensus 262 raeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 262 RAEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred hhcceEEecCCCCChhHHHHHHHHHH
Confidence 34679999999999999999999976
No 406
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.36 E-value=0.0047 Score=55.66 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.+..++|+|+||+|||++++.+.+.+
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999875
No 407
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.35 E-value=0.0032 Score=53.44 Aligned_cols=26 Identities=35% Similarity=0.322 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999999754
No 408
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.35 E-value=0.0034 Score=52.27 Aligned_cols=26 Identities=42% Similarity=0.419 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 78899999999999999999998754
No 409
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.35 E-value=0.0033 Score=51.65 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998765
No 410
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.0034 Score=53.78 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 78889999999999999999998754
No 411
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.35 E-value=0.0033 Score=53.61 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998654
No 412
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.34 E-value=0.0034 Score=52.10 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998754
No 413
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.34 E-value=0.0034 Score=54.39 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 68899999999999999999999754
No 414
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.34 E-value=0.0033 Score=53.51 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
++.++.|+|++||||||+.+.|+..+.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 678899999999999999999987643
No 415
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.34 E-value=0.0031 Score=54.26 Aligned_cols=26 Identities=31% Similarity=0.216 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 78889999999999999999998754
No 416
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.0034 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+-+.+|--.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998754
No 417
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.33 E-value=0.0033 Score=54.12 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78889999999999999999998754
No 418
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0037 Score=50.87 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 78899999999999999999998865
No 419
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0035 Score=53.00 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 77889999999999999999998765
No 420
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0035 Score=53.14 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 77889999999999999999998765
No 421
>PRK14974 cell division protein FtsY; Provisional
Probab=96.33 E-value=0.0042 Score=56.94 Aligned_cols=37 Identities=27% Similarity=0.222 Sum_probs=28.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eeecchhH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLV 128 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D~li 128 (215)
++..|+|+|++|+||||+...||..+ |.. +++.|.++
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 46789999999999999888888765 333 57778553
No 422
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.0036 Score=59.02 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=30.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLV 128 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li 128 (215)
++..|.|+|++|+||||++..||..+. ..+++.|...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 457899999999999999999998772 4478888764
No 423
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.32 E-value=0.0038 Score=50.90 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 67889999999999999999998765
No 424
>PRK04296 thymidine kinase; Provisional
Probab=96.31 E-value=0.0038 Score=52.14 Aligned_cols=25 Identities=20% Similarity=-0.011 Sum_probs=22.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+..++++|+||+||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999877
No 425
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.31 E-value=0.0038 Score=51.24 Aligned_cols=26 Identities=42% Similarity=0.356 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999998754
No 426
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.31 E-value=0.0035 Score=53.34 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 77899999999999999999998754
No 427
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.31 E-value=0.0036 Score=53.78 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 67889999999999999999999543
No 428
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.30 E-value=0.0036 Score=53.90 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 77889999999999999999998764
No 429
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.30 E-value=0.0037 Score=57.47 Aligned_cols=29 Identities=21% Similarity=0.152 Sum_probs=26.0
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
..+..|.|+|++||||||++..|.++|.-
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~ 31 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSE 31 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 36789999999999999999999998863
No 430
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.30 E-value=0.0037 Score=53.87 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 78899999999999999999999865
No 431
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.30 E-value=0.0038 Score=52.46 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 78899999999999999999998754
No 432
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.30 E-value=0.0039 Score=50.53 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999997653
No 433
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.0032 Score=52.74 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=24.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
++..+.|+|++||||||+.+.|+..+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 778999999999999999999988653
No 434
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.29 E-value=0.0036 Score=53.86 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=24.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999998865
No 435
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.29 E-value=0.0036 Score=54.14 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=24.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999998765
No 436
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.0038 Score=52.18 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999998754
No 437
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.29 E-value=0.0037 Score=54.12 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 67889999999999999999999754
No 438
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.29 E-value=0.0037 Score=53.65 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 68889999999999999999998654
No 439
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=96.29 E-value=0.035 Score=46.56 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=32.8
Q ss_pred hhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeec--chhHH
Q 028019 88 STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVF 129 (215)
Q Consensus 88 ~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~--D~li~ 129 (215)
....+++.|+|-|.+-+|||++|..+.+...-++++. |.+.+
T Consensus 18 ag~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e 61 (205)
T COG3896 18 AGMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWE 61 (205)
T ss_pred cCCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHH
Confidence 3445888899999999999999999988877666554 54444
No 440
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.29 E-value=0.0038 Score=52.61 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999998754
No 441
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.29 E-value=0.0038 Score=53.16 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=24.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 78899999999999999999998764
No 442
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.28 E-value=0.0039 Score=52.29 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999998864
No 443
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.28 E-value=0.0037 Score=53.17 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 77899999999999999999998754
No 444
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.28 E-value=0.0035 Score=54.20 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
-....|.|+|++|+||||+|+.+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 35678889999999999999999987
No 445
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.27 E-value=0.0039 Score=52.36 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=24.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999998764
No 446
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.27 E-value=0.0039 Score=53.04 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 78899999999999999999998765
No 447
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.0039 Score=53.63 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6789999999999999999999864
No 448
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.26 E-value=0.0041 Score=51.83 Aligned_cols=26 Identities=35% Similarity=0.292 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.++..+
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 78899999999999999999998764
No 449
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.26 E-value=0.0037 Score=57.43 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.+..++|+||+||||||+-+.+|--.
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998644
No 450
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.0039 Score=54.32 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..+.|+|++||||||+.+.|+..
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 7889999999999999999999874
No 451
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.25 E-value=0.0041 Score=53.56 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 68889999999999999999998754
No 452
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.25 E-value=0.004 Score=54.46 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 77899999999999999999998754
No 453
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.25 E-value=0.0045 Score=57.59 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=29.6
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC--Cceee
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFD 123 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg--~~~ld 123 (215)
+.++-|++.||||+|||.+|-.+|+.|| .||+.
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 6899999999999999999999999998 55543
No 454
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.0045 Score=57.75 Aligned_cols=38 Identities=24% Similarity=0.095 Sum_probs=31.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC---------CceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR---------YYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg---------~~~ld~D~li~ 129 (215)
.+..|+++|+.|+||||.+..||..+. ..+++.|.+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 467899999999999999999998763 34788898643
No 455
>PHA02624 large T antigen; Provisional
Probab=96.24 E-value=0.0055 Score=60.28 Aligned_cols=41 Identities=22% Similarity=0.071 Sum_probs=31.8
Q ss_pred HHhHhhcc-CCcEEEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 84 AADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 84 ~~~~~~~l-~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
.+.+...+ +..+|+|.||||+||||+++.|.+.||-..++.
T Consensus 421 lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 421 LKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 34444443 567888999999999999999999996666554
No 456
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.24 E-value=0.0045 Score=52.27 Aligned_cols=26 Identities=31% Similarity=0.190 Sum_probs=22.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
|..|.|+|++||||||+.+.+.+.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 45789999999999999999988763
No 457
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.24 E-value=0.0068 Score=60.26 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=25.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
+..++|+|++|+||||+|+.||+.+++.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4678999999999999999999999863
No 458
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.24 E-value=0.0069 Score=58.19 Aligned_cols=28 Identities=25% Similarity=0.314 Sum_probs=24.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
+..++|+|++|+||||+|+.+|+.+++.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 4579999999999999999999998653
No 459
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.24 E-value=0.0042 Score=52.48 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=24.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 78899999999999999999998765
No 460
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.24 E-value=0.0041 Score=53.44 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 67889999999999999999999654
No 461
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.24 E-value=0.0037 Score=54.48 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 67889999999999999999998654
No 462
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.24 E-value=0.0041 Score=54.07 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998764
No 463
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.23 E-value=0.004 Score=54.44 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998764
No 464
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.22 E-value=0.0043 Score=52.34 Aligned_cols=26 Identities=35% Similarity=0.249 Sum_probs=24.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999998765
No 465
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.22 E-value=0.0042 Score=53.37 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 6789999999999999999999864
No 466
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.22 E-value=0.0042 Score=53.55 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..+.|+|++||||||+.+.|+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 6788999999999999999999853
No 467
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0047 Score=58.66 Aligned_cols=38 Identities=29% Similarity=0.311 Sum_probs=33.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li 128 (215)
|..-.|+|+||.|||||.+|+-||+-++.||.=.|.--
T Consensus 224 LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTt 261 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTT 261 (564)
T ss_pred eecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccc
Confidence 46678999999999999999999999999998666543
No 468
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.22 E-value=0.0045 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 77889999999999999999998754
No 469
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.21 E-value=0.0066 Score=47.16 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=25.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCc--eeecch
Q 028019 96 VFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS 126 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D~ 126 (215)
|++.|.+|+||||++..|++.+ |.+ ++|.|-
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 8899999999999999999877 443 477773
No 470
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.21 E-value=0.0044 Score=53.20 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 67899999999999999999998754
No 471
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.21 E-value=0.0066 Score=61.46 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=24.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.+.+++|+|+||+|||++++.||+.+
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 66789999999999999999999987
No 472
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.21 E-value=0.0044 Score=51.75 Aligned_cols=26 Identities=38% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998764
No 473
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0045 Score=52.58 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 78899999999999999999998755
No 474
>PF13479 AAA_24: AAA domain
Probab=96.20 E-value=0.0038 Score=53.01 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=25.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l 127 (215)
++.+++|.|+||+||||+|..+ =+..++|+|.-
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E~g 34 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDTENG 34 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC---CCeEEEEeCCC
Confidence 3568999999999999999988 23446666654
No 475
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.20 E-value=0.0077 Score=55.91 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=24.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
..++|.||+|+||||+|+.+|+.+...
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 448899999999999999999999764
No 476
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.20 E-value=0.0044 Score=53.59 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=24.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 77889999999999999999998865
No 477
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.20 E-value=0.006 Score=50.76 Aligned_cols=29 Identities=17% Similarity=-0.041 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
++..+.|+|++||||||+-+.+...-|-.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v 48 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKA 48 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcE
Confidence 67889999999999999999985433433
No 478
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.19 E-value=0.0045 Score=49.31 Aligned_cols=26 Identities=42% Similarity=0.470 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 67888999999999999999997754
No 479
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.19 E-value=0.0044 Score=50.23 Aligned_cols=32 Identities=22% Similarity=0.094 Sum_probs=24.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh---C--Cceeecch
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D~ 126 (215)
.++|.|+||+|||+++..++... | ..|++.++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 37899999999999999886653 3 44677654
No 480
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.19 E-value=0.0058 Score=55.01 Aligned_cols=40 Identities=20% Similarity=-0.021 Sum_probs=30.0
Q ss_pred hHhhccCCcEEEEEccCCCcHHHHHHHHHHHh----CCceeecc
Q 028019 86 DISTELKGTSVFLVGMNNAIKTHLGKFLADAL----RYYYFDSD 125 (215)
Q Consensus 86 ~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~L----g~~~ld~D 125 (215)
+.+.+-....|.|+|.||||||||...+.+.+ +..++..|
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD 140 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGD 140 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCC
Confidence 33344477888899999999999999888876 34455554
No 481
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.19 E-value=0.007 Score=61.69 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
....++|+|+||+|||++++.||+.+
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHHh
Confidence 55689999999999999999999998
No 482
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.19 E-value=0.0078 Score=58.55 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
..++|+|++|+||||+|+.+|+.+..
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34789999999999999999999875
No 483
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.0042 Score=54.31 Aligned_cols=26 Identities=31% Similarity=0.161 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 67889999999999999999998754
No 484
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.18 E-value=0.0046 Score=52.98 Aligned_cols=26 Identities=42% Similarity=0.378 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 77899999999999999999998754
No 485
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.0044 Score=54.22 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 68889999999999999999998753
No 486
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.0045 Score=54.01 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 78889999999999999999998754
No 487
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.17 E-value=0.0047 Score=53.09 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 67899999999999999999998753
No 488
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.17 E-value=0.0042 Score=53.35 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..+.|+|++||||||+.+.|+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 6788999999999999999999873
No 489
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.17 E-value=0.0047 Score=53.15 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..+.|+|++||||||+.+.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhh
Confidence 6788999999999999999999864
No 490
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.17 E-value=0.0049 Score=51.45 Aligned_cols=26 Identities=31% Similarity=0.215 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 78899999999999999999998754
No 491
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.17 E-value=0.0067 Score=53.83 Aligned_cols=35 Identities=23% Similarity=0.124 Sum_probs=30.3
Q ss_pred HHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 83 ~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
|-+-+..+-+.+.++|.||||+||||-...||.+|
T Consensus 38 rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 38 RLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 44556667789999999999999999999999987
No 492
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.16 E-value=0.009 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.168 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.+.++|+|++|+||||+++.+++.+
T Consensus 38 ~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 38 MPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999999987
No 493
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.16 E-value=0.0048 Score=52.03 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
.+..++|+|++||||||+.|.++.
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 357889999999999999999985
No 494
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.16 E-value=0.0049 Score=51.86 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 78899999999999999999998754
No 495
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.0047 Score=54.06 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 78899999999999999999998765
No 496
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.16 E-value=0.014 Score=55.23 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=42.0
Q ss_pred ccccccCCCchhhHHHHHHhHhhcc-CCcEEEEEccCCCcHHHHHHHHHHHh-------CCceeecchhHHHH
Q 028019 67 TVTKVAAEDPSFAVKKKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADAL-------RYYYFDSDSLVFEA 131 (215)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~I~LiG~pGSGKSTlAk~LA~~L-------g~~~ld~D~li~~~ 131 (215)
.++++..-....++ ..+.++.... ....++|+|++|+|||++++.++.++ .+.|++.+++..+.
T Consensus 104 FdnFv~g~~n~~a~-~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~ 175 (440)
T PRK14088 104 FENFVVGPGNSFAY-HAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_pred ccccccCCchHHHH-HHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 55666553333333 3455555432 23469999999999999999999875 24567777765543
No 497
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.16 E-value=0.0046 Score=54.60 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999998755
No 498
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.15 E-value=0.0092 Score=47.62 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+|-.+-+.|++|+|||.+++.||+.+
T Consensus 52 KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 52 KPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 44555588999999999999999986
No 499
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.15 E-value=0.0047 Score=54.10 Aligned_cols=26 Identities=35% Similarity=0.340 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998754
No 500
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.15 E-value=0.0056 Score=57.23 Aligned_cols=35 Identities=31% Similarity=0.361 Sum_probs=30.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----Cceeecch
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDS 126 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~ 126 (215)
...+++|+|+..|||||++..||+++. +.++|+|-
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDv 111 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADV 111 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCC
Confidence 667899999999999999999999985 55788885
Done!