Query 028019
Match_columns 215
No_of_seqs 166 out of 1415
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 07:35:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nwj_A ATSK2; P loop, shikimat 99.9 6.8E-22 2.3E-26 171.0 13.2 127 76-202 31-158 (250)
2 3trf_A Shikimate kinase, SK; a 99.9 1.1E-21 3.6E-26 158.2 12.1 110 93-203 5-115 (185)
3 3vaa_A Shikimate kinase, SK; s 99.9 3.9E-21 1.3E-25 158.1 12.5 110 92-202 24-134 (199)
4 2iyv_A Shikimate kinase, SK; t 99.8 1.7E-20 5.9E-25 151.2 13.2 113 93-206 2-115 (184)
5 1zuh_A Shikimate kinase; alpha 99.8 2.5E-19 8.7E-24 142.6 11.9 108 93-205 7-117 (168)
6 1via_A Shikimate kinase; struc 99.8 3.5E-19 1.2E-23 142.9 11.4 104 94-202 5-109 (175)
7 2pt5_A Shikimate kinase, SK; a 99.8 5.5E-19 1.9E-23 139.9 12.3 111 94-205 1-113 (168)
8 1e6c_A Shikimate kinase; phosp 99.8 5.1E-19 1.8E-23 140.5 12.1 111 93-205 2-116 (173)
9 1kag_A SKI, shikimate kinase I 99.8 9.8E-19 3.4E-23 139.1 11.7 113 93-206 4-118 (173)
10 1knq_A Gluconate kinase; ALFA/ 99.6 3.8E-14 1.3E-18 113.0 12.4 108 91-206 6-125 (175)
11 1qhx_A CPT, protein (chloramph 99.6 1.1E-14 3.8E-19 116.0 9.1 116 92-210 2-138 (178)
12 3be4_A Adenylate kinase; malar 99.5 1.5E-14 5.2E-19 120.2 7.8 110 92-206 4-133 (217)
13 3lw7_A Adenylate kinase relate 99.5 4.7E-14 1.6E-18 110.1 10.1 109 94-208 2-125 (179)
14 1zd8_A GTP:AMP phosphotransfer 99.5 4.5E-14 1.5E-18 117.8 9.0 113 92-205 6-128 (227)
15 3fdi_A Uncharacterized protein 99.5 6.7E-14 2.3E-18 116.5 9.1 105 91-202 4-133 (201)
16 2cdn_A Adenylate kinase; phosp 99.5 3.7E-14 1.3E-18 115.8 6.9 115 89-207 16-149 (201)
17 3cm0_A Adenylate kinase; ATP-b 99.5 5.2E-14 1.8E-18 112.8 7.5 106 92-202 3-122 (186)
18 1y63_A LMAJ004144AAA protein; 99.5 1E-14 3.5E-19 118.3 3.4 108 92-207 9-123 (184)
19 2rhm_A Putative kinase; P-loop 99.5 2.2E-14 7.5E-19 115.2 4.4 41 92-132 4-44 (193)
20 1ly1_A Polynucleotide kinase; 99.5 1.3E-13 4.5E-18 109.2 8.7 111 93-206 2-127 (181)
21 4eun_A Thermoresistant glucoki 99.5 2E-12 6.7E-17 106.0 15.2 109 92-207 28-147 (200)
22 2c95_A Adenylate kinase 1; tra 99.5 3.3E-13 1.1E-17 108.5 10.3 111 92-205 8-133 (196)
23 1kht_A Adenylate kinase; phosp 99.5 5.4E-13 1.8E-17 106.6 11.3 115 92-209 2-142 (192)
24 2bwj_A Adenylate kinase 5; pho 99.4 6.7E-13 2.3E-17 107.0 11.3 113 92-207 11-138 (199)
25 1qf9_A UMP/CMP kinase, protein 99.4 3.4E-13 1.2E-17 107.6 9.4 107 93-202 6-127 (194)
26 1zak_A Adenylate kinase; ATP:A 99.4 3.8E-13 1.3E-17 111.6 9.4 107 92-202 4-125 (222)
27 1tev_A UMP-CMP kinase; ploop, 99.4 3.9E-13 1.3E-17 107.5 8.2 108 92-202 2-130 (196)
28 3hdt_A Putative kinase; struct 99.4 2.2E-13 7.5E-18 115.7 6.9 104 93-202 14-153 (223)
29 1aky_A Adenylate kinase; ATP:A 99.4 8.5E-13 2.9E-17 109.3 10.2 111 92-206 3-133 (220)
30 3a4m_A L-seryl-tRNA(SEC) kinas 99.4 7E-13 2.4E-17 113.6 9.9 105 92-206 3-121 (260)
31 1ak2_A Adenylate kinase isoenz 99.4 4.7E-13 1.6E-17 112.3 8.6 110 92-206 15-144 (233)
32 3iij_A Coilin-interacting nucl 99.4 8E-13 2.7E-17 105.9 8.6 101 92-207 10-119 (180)
33 3a8t_A Adenylate isopentenyltr 99.4 3.4E-13 1.2E-17 121.6 5.8 110 92-202 39-190 (339)
34 3t61_A Gluconokinase; PSI-biol 99.4 1.5E-12 5.2E-17 106.3 8.3 104 92-202 17-127 (202)
35 2xb4_A Adenylate kinase; ATP-b 99.3 3E-12 1E-16 106.9 9.6 109 94-206 1-127 (223)
36 1ukz_A Uridylate kinase; trans 99.3 1.3E-11 4.6E-16 100.3 12.8 110 92-202 14-137 (203)
37 3kb2_A SPBC2 prophage-derived 99.3 1.1E-11 3.6E-16 97.4 11.4 38 94-131 2-39 (173)
38 2vli_A Antibiotic resistance p 99.3 7.5E-13 2.6E-17 105.6 4.6 106 92-206 4-126 (183)
39 3fb4_A Adenylate kinase; psych 99.3 1.2E-11 4E-16 101.6 11.4 108 94-205 1-127 (216)
40 2grj_A Dephospho-COA kinase; T 99.3 3.9E-12 1.3E-16 105.4 8.6 54 91-145 10-63 (192)
41 3dl0_A Adenylate kinase; phosp 99.3 6.4E-12 2.2E-16 103.4 9.3 108 94-205 1-127 (216)
42 1e4v_A Adenylate kinase; trans 99.3 1.4E-11 4.6E-16 101.8 10.9 109 94-206 1-124 (214)
43 3umf_A Adenylate kinase; rossm 99.3 1.2E-11 4.1E-16 104.8 10.8 110 92-205 28-153 (217)
44 2pbr_A DTMP kinase, thymidylat 99.3 8.8E-12 3E-16 99.7 9.2 107 94-202 1-139 (195)
45 1m7g_A Adenylylsulfate kinase; 99.3 9E-12 3.1E-16 102.8 9.2 114 84-203 16-149 (211)
46 3tlx_A Adenylate kinase 2; str 99.3 1.6E-11 5.4E-16 104.3 10.9 52 81-132 16-68 (243)
47 3sr0_A Adenylate kinase; phosp 99.3 1.1E-11 3.6E-16 104.0 9.2 109 94-205 1-124 (206)
48 3uie_A Adenylyl-sulfate kinase 99.3 2.3E-11 8E-16 99.5 10.6 107 91-203 23-140 (200)
49 1nks_A Adenylate kinase; therm 99.3 5.1E-11 1.8E-15 94.9 12.1 113 94-207 2-141 (194)
50 2if2_A Dephospho-COA kinase; a 99.3 3.6E-12 1.2E-16 103.8 5.3 38 94-132 2-39 (204)
51 2h92_A Cytidylate kinase; ross 99.2 4.4E-13 1.5E-17 110.4 -0.8 39 92-130 2-40 (219)
52 1ltq_A Polynucleotide kinase; 99.2 2E-11 6.8E-16 105.2 9.5 111 93-206 2-127 (301)
53 2p5t_B PEZT; postsegregational 99.2 3.7E-11 1.3E-15 102.3 10.6 106 92-202 31-153 (253)
54 3gmt_A Adenylate kinase; ssgci 99.2 2.2E-11 7.7E-16 104.3 8.2 110 93-206 8-132 (230)
55 2yvu_A Probable adenylyl-sulfa 99.2 3.8E-11 1.3E-15 96.7 8.1 105 92-202 12-129 (186)
56 1uj2_A Uridine-cytidine kinase 99.2 1.4E-11 4.8E-16 104.5 5.8 38 92-129 21-68 (252)
57 1vht_A Dephospho-COA kinase; s 99.2 7.7E-11 2.6E-15 97.1 9.7 40 92-132 3-42 (218)
58 1jjv_A Dephospho-COA kinase; P 99.2 4.8E-11 1.6E-15 97.4 8.2 37 94-131 3-39 (206)
59 1uf9_A TT1252 protein; P-loop, 99.2 1.8E-11 6.2E-16 98.8 5.5 40 92-132 7-46 (203)
60 1cke_A CK, MSSA, protein (cyti 99.2 1.4E-11 4.7E-16 101.6 4.6 38 93-130 5-42 (227)
61 2pez_A Bifunctional 3'-phospho 99.2 1.1E-10 3.7E-15 93.4 9.6 106 92-202 4-121 (179)
62 1x6v_B Bifunctional 3'-phospho 99.2 1E-10 3.6E-15 112.9 11.1 110 91-204 50-170 (630)
63 2ze6_A Isopentenyl transferase 99.2 3.2E-11 1.1E-15 103.1 6.1 104 94-202 2-134 (253)
64 4e22_A Cytidylate kinase; P-lo 99.1 5.6E-11 1.9E-15 101.4 7.1 39 92-130 26-64 (252)
65 1q3t_A Cytidylate kinase; nucl 99.1 2.2E-12 7.4E-17 108.4 -1.8 40 91-130 14-53 (236)
66 2axn_A 6-phosphofructo-2-kinas 99.1 6.7E-11 2.3E-15 111.5 8.0 111 92-202 34-164 (520)
67 3cr8_A Sulfate adenylyltranfer 99.1 1E-10 3.5E-15 111.3 8.7 110 92-206 368-489 (552)
68 2jaq_A Deoxyguanosine kinase; 99.1 3.6E-10 1.2E-14 90.9 9.6 30 94-123 1-30 (205)
69 1m8p_A Sulfate adenylyltransfe 99.1 4.6E-10 1.6E-14 107.1 11.9 118 82-206 380-516 (573)
70 2plr_A DTMP kinase, probable t 99.1 1.6E-09 5.5E-14 87.5 12.9 32 92-123 3-36 (213)
71 3ake_A Cytidylate kinase; CMP 99.1 4.5E-10 1.6E-14 90.9 9.3 38 94-131 3-40 (208)
72 1nn5_A Similar to deoxythymidy 99.1 1E-10 3.6E-15 95.1 5.5 36 92-127 8-43 (215)
73 2v54_A DTMP kinase, thymidylat 99.1 7.6E-11 2.6E-15 95.4 4.6 36 92-127 3-39 (204)
74 2f6r_A COA synthase, bifunctio 99.1 1.2E-09 4.2E-14 94.7 12.5 39 92-131 74-112 (281)
75 1gvn_B Zeta; postsegregational 99.1 7.3E-10 2.5E-14 96.7 10.7 111 92-202 32-158 (287)
76 2z0h_A DTMP kinase, thymidylat 99.1 4.8E-10 1.7E-14 89.9 8.7 32 95-126 2-36 (197)
77 3zvl_A Bifunctional polynucleo 99.1 2.9E-10 9.9E-15 104.0 8.1 92 92-202 257-353 (416)
78 2bbw_A Adenylate kinase 4, AK4 99.0 1.1E-09 3.9E-14 92.1 10.3 107 92-202 26-144 (246)
79 4i1u_A Dephospho-COA kinase; s 99.0 1.4E-09 4.7E-14 91.9 9.7 53 93-146 9-63 (210)
80 2bdt_A BH3686; alpha-beta prot 99.0 1.1E-09 3.8E-14 88.1 8.6 110 93-207 2-124 (189)
81 3r20_A Cytidylate kinase; stru 99.0 3E-09 1E-13 91.0 10.3 40 92-131 8-47 (233)
82 2wwf_A Thymidilate kinase, put 99.0 2.9E-10 1E-14 92.4 3.6 36 91-126 8-43 (212)
83 1bif_A 6-phosphofructo-2-kinas 99.0 2E-10 6.9E-15 106.3 2.9 68 92-159 38-110 (469)
84 2gks_A Bifunctional SAT/APS ki 98.9 3.4E-09 1.1E-13 100.6 10.2 119 81-206 355-490 (546)
85 2qt1_A Nicotinamide riboside k 98.9 3E-09 1E-13 86.9 8.3 44 86-129 13-58 (207)
86 3crm_A TRNA delta(2)-isopenten 98.9 1.1E-09 3.6E-14 98.1 5.5 80 93-174 5-104 (323)
87 2qor_A Guanylate kinase; phosp 98.9 1E-09 3.5E-14 89.9 4.6 28 91-118 10-37 (204)
88 4eaq_A DTMP kinase, thymidylat 98.8 2.2E-08 7.6E-13 84.4 11.0 33 92-124 25-59 (229)
89 3d3q_A TRNA delta(2)-isopenten 98.7 9E-09 3.1E-13 92.7 5.9 99 94-197 8-126 (340)
90 4b4t_J 26S protease regulatory 98.7 3.5E-09 1.2E-13 97.4 2.9 67 57-125 145-214 (405)
91 2ga8_A Hypothetical 39.9 kDa p 98.7 8.8E-10 3E-14 100.0 -1.8 61 94-156 25-105 (359)
92 1p5z_B DCK, deoxycytidine kina 98.7 3.2E-08 1.1E-12 84.1 7.2 33 92-124 23-56 (263)
93 4b4t_L 26S protease subunit RP 98.7 7.2E-09 2.5E-13 96.1 3.0 67 57-125 178-247 (437)
94 4b4t_K 26S protease regulatory 98.7 8.2E-09 2.8E-13 95.5 3.3 67 57-125 169-238 (428)
95 4b4t_M 26S protease regulatory 98.6 7.6E-09 2.6E-13 95.9 2.8 68 56-125 177-247 (434)
96 4b4t_I 26S protease regulatory 98.6 9.4E-09 3.2E-13 95.4 2.8 68 56-125 178-248 (437)
97 4b4t_H 26S protease regulatory 98.6 1.1E-08 3.6E-13 95.8 2.8 67 57-125 206-275 (467)
98 1zp6_A Hypothetical protein AT 98.6 2.1E-07 7.1E-12 74.3 9.1 39 92-130 8-48 (191)
99 2ocp_A DGK, deoxyguanosine kin 98.5 7.7E-07 2.6E-11 74.4 12.1 31 92-122 1-32 (241)
100 3asz_A Uridine kinase; cytidin 98.5 3.8E-07 1.3E-11 74.2 9.1 38 92-129 5-44 (211)
101 4edh_A DTMP kinase, thymidylat 98.5 5.1E-07 1.7E-11 75.6 9.5 29 90-118 3-31 (213)
102 3c8u_A Fructokinase; YP_612366 98.5 1.9E-07 6.5E-12 76.6 6.0 37 92-128 21-62 (208)
103 3v9p_A DTMP kinase, thymidylat 98.4 3.2E-07 1.1E-11 77.9 7.1 29 91-119 23-51 (227)
104 2x8a_A Nuclear valosin-contain 98.4 1.2E-07 4.1E-12 81.9 2.6 67 56-124 6-75 (274)
105 3lv8_A DTMP kinase, thymidylat 98.4 9.9E-07 3.4E-11 75.3 8.2 29 91-119 25-53 (236)
106 3cf2_A TER ATPase, transitiona 98.3 1.6E-07 5.4E-12 93.0 2.7 67 57-125 201-270 (806)
107 3tr0_A Guanylate kinase, GMP k 98.3 2.5E-06 8.5E-11 68.6 9.4 27 92-118 6-32 (205)
108 4hlc_A DTMP kinase, thymidylat 98.3 2.3E-06 7.9E-11 71.1 8.9 30 93-122 2-33 (205)
109 1g8f_A Sulfate adenylyltransfe 98.3 5.1E-07 1.7E-11 85.2 5.0 51 76-126 373-435 (511)
110 1xwi_A SKD1 protein; VPS4B, AA 98.3 2.9E-07 9.8E-12 81.1 3.1 66 56-123 8-76 (322)
111 3exa_A TRNA delta(2)-isopenten 98.3 1.9E-06 6.6E-11 77.0 7.8 82 92-173 2-101 (322)
112 3cf0_A Transitional endoplasmi 98.2 4.3E-07 1.5E-11 78.8 3.5 75 57-133 12-91 (301)
113 3tau_A Guanylate kinase, GMP k 98.2 2.8E-07 9.7E-12 75.8 2.1 27 92-118 7-33 (208)
114 4tmk_A Protein (thymidylate ki 98.2 2.7E-06 9.3E-11 71.3 8.2 27 92-118 2-28 (213)
115 2vp4_A Deoxynucleoside kinase; 98.2 4.5E-06 1.5E-10 69.6 8.9 28 91-118 18-45 (230)
116 3ld9_A DTMP kinase, thymidylat 98.2 3.3E-06 1.1E-10 71.5 7.5 28 92-119 20-47 (223)
117 3eie_A Vacuolar protein sortin 98.2 6.4E-07 2.2E-11 78.4 3.1 67 57-125 15-83 (322)
118 3h4m_A Proteasome-activating n 98.1 9.3E-07 3.2E-11 75.0 3.2 66 57-124 14-82 (285)
119 3tqc_A Pantothenate kinase; bi 98.1 3E-06 1E-10 75.5 6.0 36 93-128 92-134 (321)
120 2qp9_X Vacuolar protein sortin 98.1 1.3E-06 4.5E-11 77.9 3.6 68 56-125 47-116 (355)
121 3b9p_A CG5977-PA, isoform A; A 98.1 1.2E-06 4.2E-11 74.8 3.1 67 57-125 18-86 (297)
122 3foz_A TRNA delta(2)-isopenten 98.1 4.7E-06 1.6E-10 74.3 6.8 36 92-127 9-44 (316)
123 1a7j_A Phosphoribulokinase; tr 98.1 9.9E-07 3.4E-11 77.0 1.9 38 92-129 4-46 (290)
124 3tmk_A Thymidylate kinase; pho 98.1 5.5E-06 1.9E-10 69.7 6.4 28 92-119 4-31 (216)
125 3eph_A TRNA isopentenyltransfe 98.1 6.4E-06 2.2E-10 75.8 7.3 81 93-173 2-100 (409)
126 1lv7_A FTSH; alpha/beta domain 98.0 3.1E-06 1.1E-10 71.0 3.6 34 92-125 44-77 (257)
127 3cf2_A TER ATPase, transitiona 98.0 1.6E-06 5.5E-11 85.8 1.3 68 56-125 473-543 (806)
128 3ec2_A DNA replication protein 98.0 1.2E-05 4.1E-10 63.8 6.2 63 68-130 10-81 (180)
129 2zan_A Vacuolar protein sortin 98.0 2.8E-06 9.7E-11 78.0 2.8 67 56-124 130-199 (444)
130 3t15_A Ribulose bisphosphate c 97.9 5.9E-06 2E-10 71.6 4.5 34 92-125 35-68 (293)
131 3hjn_A DTMP kinase, thymidylat 97.9 0.00011 3.7E-09 60.4 11.8 29 95-123 2-33 (197)
132 3vfd_A Spastin; ATPase, microt 97.9 3.3E-06 1.1E-10 75.6 2.9 34 92-125 147-180 (389)
133 3d8b_A Fidgetin-like protein 1 97.9 3.2E-06 1.1E-10 75.2 2.7 34 92-125 116-149 (357)
134 2qz4_A Paraplegin; AAA+, SPG7, 97.9 1.2E-05 4.2E-10 66.7 4.7 33 92-124 38-70 (262)
135 1ypw_A Transitional endoplasmi 97.8 7.8E-06 2.7E-10 80.6 3.7 55 71-125 213-270 (806)
136 3hws_A ATP-dependent CLP prote 97.8 1.3E-05 4.4E-10 71.0 4.6 35 92-126 50-84 (363)
137 2jeo_A Uridine-cytidine kinase 97.8 1.4E-05 4.9E-10 67.0 4.5 37 92-128 24-70 (245)
138 1g41_A Heat shock protein HSLU 97.8 1.2E-05 4.2E-10 74.6 4.4 36 91-126 48-83 (444)
139 4gp7_A Metallophosphoesterase; 97.8 6.4E-05 2.2E-09 59.8 7.8 36 92-129 8-43 (171)
140 3ch4_B Pmkase, phosphomevalona 97.7 8.3E-05 2.8E-09 62.3 8.1 39 92-130 10-51 (202)
141 2j41_A Guanylate kinase; GMP, 97.7 1.5E-05 5.2E-10 63.9 3.2 26 92-117 5-30 (207)
142 1ofh_A ATP-dependent HSL prote 97.7 2.9E-05 9.8E-10 65.8 4.9 35 91-125 48-82 (310)
143 1jbk_A CLPB protein; beta barr 97.7 5.9E-05 2E-09 58.3 6.0 27 91-117 41-67 (195)
144 1d2n_A N-ethylmaleimide-sensit 97.7 2.5E-05 8.5E-10 66.1 4.0 34 92-125 63-96 (272)
145 2p65_A Hypothetical protein PF 97.7 4.8E-05 1.6E-09 59.0 5.2 27 91-117 41-67 (187)
146 3hu3_A Transitional endoplasmi 97.7 1.7E-05 5.7E-10 74.2 2.9 49 77-125 219-270 (489)
147 1um8_A ATP-dependent CLP prote 97.7 2.9E-05 9.8E-10 68.9 4.3 35 92-126 71-105 (376)
148 1kgd_A CASK, peripheral plasma 97.7 3.2E-05 1.1E-09 61.9 4.1 28 91-118 3-30 (180)
149 2r62_A Cell division protease 97.6 1.8E-05 6.2E-10 66.4 2.2 34 92-125 43-76 (268)
150 1sq5_A Pantothenate kinase; P- 97.6 4.5E-05 1.5E-09 66.6 4.5 37 92-128 79-122 (308)
151 3syl_A Protein CBBX; photosynt 97.6 3.6E-05 1.2E-09 65.7 3.3 26 92-117 66-91 (309)
152 2ce7_A Cell division protein F 97.6 3.6E-05 1.2E-09 71.9 3.5 34 92-125 48-81 (476)
153 1ixz_A ATP-dependent metallopr 97.6 5.9E-05 2E-09 63.0 4.5 33 93-125 49-81 (254)
154 3bos_A Putative DNA replicatio 97.5 9.5E-05 3.2E-09 59.8 5.5 38 91-128 50-92 (242)
155 2c9o_A RUVB-like 1; hexameric 97.5 6.2E-05 2.1E-09 69.1 4.7 35 91-125 61-97 (456)
156 2kjq_A DNAA-related protein; s 97.5 6.4E-05 2.2E-09 59.1 4.1 36 92-127 35-75 (149)
157 1gtv_A TMK, thymidylate kinase 97.5 2.4E-05 8.3E-10 63.1 1.7 26 94-119 1-26 (214)
158 3pfi_A Holliday junction ATP-d 97.5 7.1E-05 2.4E-09 64.9 4.3 35 92-126 54-88 (338)
159 1l8q_A Chromosomal replication 97.5 0.0002 6.8E-09 61.9 7.1 45 84-128 26-77 (324)
160 1rz3_A Hypothetical protein rb 97.5 9.7E-05 3.3E-09 60.0 4.8 38 92-129 21-63 (201)
161 3n70_A Transport activator; si 97.4 0.00011 3.8E-09 56.7 4.5 31 92-122 23-56 (145)
162 3ney_A 55 kDa erythrocyte memb 97.4 9E-05 3.1E-09 61.6 4.0 34 85-118 11-44 (197)
163 1iy2_A ATP-dependent metallopr 97.4 0.00011 3.6E-09 62.6 4.5 33 93-125 73-105 (278)
164 2w58_A DNAI, primosome compone 97.4 0.00023 7.9E-09 57.1 6.2 37 94-130 55-96 (202)
165 1dek_A Deoxynucleoside monopho 97.4 0.00011 3.7E-09 62.9 4.4 37 94-130 2-38 (241)
166 3a00_A Guanylate kinase, GMP k 97.4 8E-05 2.7E-09 59.7 3.3 26 93-118 1-26 (186)
167 2qmh_A HPR kinase/phosphorylas 97.4 7.7E-05 2.6E-09 62.7 3.3 36 91-127 32-67 (205)
168 1sxj_A Activator 1 95 kDa subu 97.4 0.00012 4.1E-09 68.2 4.8 34 92-125 76-109 (516)
169 1in4_A RUVB, holliday junction 97.4 0.00011 3.8E-09 64.5 4.2 30 92-121 50-79 (334)
170 1odf_A YGR205W, hypothetical 3 97.3 0.00021 7.2E-09 62.3 5.3 39 91-129 29-75 (290)
171 1lvg_A Guanylate kinase, GMP k 97.3 0.00012 4.1E-09 59.6 3.4 27 92-118 3-29 (198)
172 1ye8_A Protein THEP1, hypothet 97.3 0.00015 5E-09 58.7 3.8 28 94-121 1-28 (178)
173 2chg_A Replication factor C sm 97.3 0.00027 9.3E-09 55.8 5.2 26 92-117 37-62 (226)
174 1ypw_A Transitional endoplasmi 97.3 2.4E-05 8.1E-10 77.2 -1.3 34 92-125 510-543 (806)
175 3m6a_A ATP-dependent protease 97.3 0.00022 7.4E-09 67.2 5.2 37 88-124 103-139 (543)
176 2qby_B CDC6 homolog 3, cell di 97.3 0.00036 1.2E-08 60.8 6.2 34 92-125 44-88 (384)
177 1hqc_A RUVB; extended AAA-ATPa 97.3 0.00015 5.1E-09 62.1 3.7 32 92-123 37-68 (324)
178 3lnc_A Guanylate kinase, GMP k 97.3 0.00013 4.5E-09 60.2 3.1 26 92-117 26-52 (231)
179 1njg_A DNA polymerase III subu 97.3 0.00038 1.3E-08 55.4 5.6 28 92-119 44-71 (250)
180 1znw_A Guanylate kinase, GMP k 97.2 0.00026 8.9E-09 57.6 4.7 28 91-118 18-45 (207)
181 2v1u_A Cell division control p 97.2 0.00016 5.3E-09 62.8 3.5 34 92-125 43-85 (387)
182 3co5_A Putative two-component 97.2 0.0001 3.5E-09 56.9 2.0 33 92-125 26-58 (143)
183 3pxg_A Negative regulator of g 97.2 0.00033 1.1E-08 64.6 5.7 40 87-126 195-244 (468)
184 3uk6_A RUVB-like 2; hexameric 97.2 0.00024 8.3E-09 62.0 4.5 28 92-119 69-96 (368)
185 4fcw_A Chaperone protein CLPB; 97.2 0.00023 7.7E-09 60.6 3.8 24 94-117 48-71 (311)
186 2r44_A Uncharacterized protein 97.2 0.00018 6.1E-09 62.3 3.2 32 92-123 45-76 (331)
187 2qby_A CDC6 homolog 1, cell di 97.2 0.00028 9.7E-09 60.9 4.3 34 92-125 44-83 (386)
188 1z6g_A Guanylate kinase; struc 97.1 0.00025 8.5E-09 58.7 3.5 26 92-117 22-47 (218)
189 3te6_A Regulatory protein SIR3 97.1 0.00031 1.1E-08 62.4 4.3 26 92-117 44-69 (318)
190 3pvs_A Replication-associated 97.1 0.0004 1.4E-08 64.0 5.1 33 93-125 50-82 (447)
191 2dhr_A FTSH; AAA+ protein, hex 97.1 0.00033 1.1E-08 65.7 4.5 33 93-125 64-96 (499)
192 3u61_B DNA polymerase accessor 97.1 0.00049 1.7E-08 59.2 5.2 34 92-125 47-80 (324)
193 1s96_A Guanylate kinase, GMP k 97.1 0.00035 1.2E-08 58.3 3.9 28 91-118 14-41 (219)
194 1tue_A Replication protein E1; 97.1 0.00036 1.2E-08 58.9 3.8 32 92-123 57-88 (212)
195 1svm_A Large T antigen; AAA+ f 97.1 0.00045 1.5E-08 62.6 4.7 32 92-123 168-199 (377)
196 1fnn_A CDC6P, cell division co 97.1 0.00079 2.7E-08 58.5 6.1 31 95-125 46-80 (389)
197 2ehv_A Hypothetical protein PH 97.0 0.00036 1.2E-08 57.1 3.6 23 92-114 29-51 (251)
198 1htw_A HI0065; nucleotide-bind 97.0 0.00072 2.5E-08 53.8 5.2 27 91-117 31-57 (158)
199 3aez_A Pantothenate kinase; tr 97.0 0.00041 1.4E-08 61.0 3.8 36 92-127 89-131 (312)
200 3pxi_A Negative regulator of g 97.0 0.00069 2.4E-08 65.7 5.7 39 88-126 196-244 (758)
201 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00054 1.8E-08 55.1 4.0 35 92-126 22-61 (235)
202 4a74_A DNA repair and recombin 97.0 0.00042 1.4E-08 56.0 3.3 26 92-117 24-49 (231)
203 2z4s_A Chromosomal replication 97.0 0.00097 3.3E-08 61.0 6.1 47 82-128 118-172 (440)
204 1ex7_A Guanylate kinase; subst 96.9 0.00052 1.8E-08 56.3 3.7 25 94-118 2-26 (186)
205 2bjv_A PSP operon transcriptio 96.9 0.00051 1.8E-08 57.5 3.6 27 92-118 28-54 (265)
206 1osn_A Thymidine kinase, VZV-T 96.9 0.0026 8.9E-08 57.1 7.9 31 90-120 9-40 (341)
207 2cvh_A DNA repair and recombin 96.8 0.00075 2.6E-08 54.2 3.6 35 92-126 19-55 (220)
208 2v9p_A Replication protein E1; 96.8 0.00091 3.1E-08 59.0 4.0 26 92-117 125-150 (305)
209 2i3b_A HCR-ntpase, human cance 96.8 0.00083 2.8E-08 54.9 3.5 25 93-117 1-25 (189)
210 2dr3_A UPF0273 protein PH0284; 96.8 0.0014 4.9E-08 53.3 5.0 35 92-126 22-61 (247)
211 3tif_A Uncharacterized ABC tra 96.8 0.0007 2.4E-08 57.0 3.1 26 92-117 30-55 (235)
212 3tqf_A HPR(Ser) kinase; transf 96.7 0.0011 3.8E-08 54.6 4.1 39 91-130 14-52 (181)
213 1jr3_A DNA polymerase III subu 96.7 0.0019 6.5E-08 56.0 5.8 27 93-119 38-64 (373)
214 1sxj_D Activator 1 41 kDa subu 96.7 0.0015 5E-08 56.3 4.9 25 94-118 59-83 (353)
215 2pcj_A ABC transporter, lipopr 96.7 0.0008 2.7E-08 56.1 3.0 26 92-117 29-54 (224)
216 1n0w_A DNA repair protein RAD5 96.7 0.001 3.5E-08 54.2 3.6 25 92-116 23-47 (243)
217 1xjc_A MOBB protein homolog; s 96.7 0.0012 4.1E-08 53.5 3.9 25 93-117 4-28 (169)
218 1rj9_A FTSY, signal recognitio 96.7 0.0011 3.9E-08 58.0 4.0 26 92-117 101-126 (304)
219 1c9k_A COBU, adenosylcobinamid 96.7 0.00076 2.6E-08 55.3 2.5 28 96-124 2-31 (180)
220 2px0_A Flagellar biosynthesis 96.7 0.0025 8.7E-08 55.5 6.0 36 92-127 104-145 (296)
221 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0013 4.4E-08 63.6 4.4 31 95-125 490-520 (758)
222 1g8p_A Magnesium-chelatase 38 96.6 0.00064 2.2E-08 58.6 2.1 26 93-118 45-70 (350)
223 2eyu_A Twitching motility prot 96.6 0.0012 4.1E-08 56.5 3.8 27 91-117 23-49 (261)
224 1iqp_A RFCS; clamp loader, ext 96.6 0.0022 7.4E-08 54.4 5.4 27 92-118 45-71 (327)
225 2orw_A Thymidine kinase; TMTK, 96.6 0.0014 4.9E-08 52.9 4.0 26 92-117 2-27 (184)
226 1qvr_A CLPB protein; coiled co 96.6 0.0016 5.4E-08 64.2 5.1 35 91-125 189-233 (854)
227 1cr0_A DNA primase/helicase; R 96.6 0.0013 4.5E-08 56.1 4.0 27 91-117 33-59 (296)
228 3b9q_A Chloroplast SRP recepto 96.6 0.0012 4.1E-08 57.8 3.8 26 92-117 99-124 (302)
229 2cbz_A Multidrug resistance-as 96.6 0.00097 3.3E-08 56.2 3.1 26 92-117 30-55 (237)
230 1sxj_C Activator 1 40 kDa subu 96.6 0.0023 7.9E-08 55.7 5.4 23 96-118 49-71 (340)
231 2qgz_A Helicase loader, putati 96.6 0.0015 5E-08 57.1 4.0 49 83-131 139-196 (308)
232 2d2e_A SUFC protein; ABC-ATPas 96.6 0.0013 4.5E-08 55.7 3.6 25 92-116 28-52 (250)
233 4g1u_C Hemin import ATP-bindin 96.6 0.0011 3.7E-08 57.0 3.1 26 92-117 36-61 (266)
234 2qen_A Walker-type ATPase; unk 96.6 0.0012 4.3E-08 56.2 3.4 34 93-126 31-64 (350)
235 1b0u_A Histidine permease; ABC 96.6 0.0011 3.8E-08 56.6 3.1 26 92-117 31-56 (262)
236 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0028 9.5E-08 61.3 6.2 28 90-117 204-231 (758)
237 1lw7_A Transcriptional regulat 96.5 0.0013 4.4E-08 58.3 3.5 28 93-120 170-197 (365)
238 1sxj_E Activator 1 40 kDa subu 96.5 0.0012 4.1E-08 57.2 3.2 23 95-117 38-60 (354)
239 2ff7_A Alpha-hemolysin translo 96.5 0.0012 4.1E-08 56.0 3.1 26 92-117 34-59 (247)
240 3gfo_A Cobalt import ATP-bindi 96.5 0.0012 4E-08 57.2 3.1 26 92-117 33-58 (275)
241 1ji0_A ABC transporter; ATP bi 96.5 0.0012 4.1E-08 55.6 3.1 26 92-117 31-56 (240)
242 1vma_A Cell division protein F 96.5 0.0015 5.2E-08 57.4 3.8 36 92-127 103-143 (306)
243 1nlf_A Regulatory protein REPA 96.5 0.0017 5.8E-08 55.1 4.0 27 91-117 28-54 (279)
244 1g6h_A High-affinity branched- 96.5 0.0012 4.2E-08 56.1 3.1 26 92-117 32-57 (257)
245 2pze_A Cystic fibrosis transme 96.5 0.0012 4.3E-08 55.1 3.1 26 92-117 33-58 (229)
246 2fna_A Conserved hypothetical 96.5 0.0028 9.6E-08 54.0 5.3 32 94-125 31-64 (357)
247 3b85_A Phosphate starvation-in 96.5 0.001 3.4E-08 55.2 2.4 25 92-116 21-45 (208)
248 1mv5_A LMRA, multidrug resista 96.5 0.0012 4E-08 55.7 2.8 26 92-117 27-52 (243)
249 3e70_C DPA, signal recognition 96.5 0.0016 5.4E-08 57.8 3.7 26 92-117 128-153 (328)
250 2zu0_C Probable ATP-dependent 96.5 0.0016 5.4E-08 55.9 3.6 25 92-116 45-69 (267)
251 2olj_A Amino acid ABC transpor 96.5 0.0013 4.5E-08 56.5 3.1 26 92-117 49-74 (263)
252 2f1r_A Molybdopterin-guanine d 96.5 0.00097 3.3E-08 53.8 2.1 25 93-117 2-26 (171)
253 2chq_A Replication factor C sm 96.5 0.0025 8.5E-08 53.8 4.7 23 95-117 40-62 (319)
254 2ghi_A Transport protein; mult 96.5 0.0014 4.7E-08 56.0 3.1 26 92-117 45-70 (260)
255 2ixe_A Antigen peptide transpo 96.5 0.0014 4.8E-08 56.4 3.1 26 92-117 44-69 (271)
256 1sgw_A Putative ABC transporte 96.5 0.0013 4.4E-08 54.9 2.7 26 92-117 34-59 (214)
257 1u0j_A DNA replication protein 96.4 0.0022 7.5E-08 55.8 4.1 27 93-119 104-130 (267)
258 2yz2_A Putative ABC transporte 96.4 0.0016 5.3E-08 55.8 3.1 26 92-117 32-57 (266)
259 1np6_A Molybdopterin-guanine d 96.4 0.0024 8.4E-08 51.6 4.1 25 93-117 6-30 (174)
260 2yv5_A YJEQ protein; hydrolase 96.4 0.0022 7.6E-08 55.8 4.1 32 85-117 157-188 (302)
261 2qi9_C Vitamin B12 import ATP- 96.4 0.0016 5.4E-08 55.5 3.1 26 92-117 25-50 (249)
262 2ihy_A ABC transporter, ATP-bi 96.4 0.0016 5.5E-08 56.4 3.1 26 92-117 46-71 (279)
263 2wsm_A Hydrogenase expression/ 96.4 0.0036 1.2E-07 50.4 5.0 28 91-118 28-55 (221)
264 1vpl_A ABC transporter, ATP-bi 96.4 0.0016 5.6E-08 55.6 3.1 26 92-117 40-65 (256)
265 1sxj_B Activator 1 37 kDa subu 96.4 0.0038 1.3E-07 52.7 5.3 23 95-117 44-66 (323)
266 2og2_A Putative signal recogni 96.4 0.002 6.9E-08 58.0 3.7 26 92-117 156-181 (359)
267 2hf9_A Probable hydrogenase ni 96.4 0.0041 1.4E-07 50.2 5.2 27 91-117 36-62 (226)
268 2onk_A Molybdate/tungstate ABC 96.4 0.002 6.9E-08 54.5 3.4 24 94-117 25-48 (240)
269 1ojl_A Transcriptional regulat 96.4 0.0022 7.5E-08 55.7 3.7 26 92-117 24-49 (304)
270 3kta_A Chromosome segregation 96.3 0.003 1E-07 49.6 4.1 28 92-119 25-52 (182)
271 2nq2_C Hypothetical ABC transp 96.3 0.0018 6.3E-08 55.1 3.1 26 92-117 30-55 (253)
272 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0019 6.4E-08 57.9 3.0 34 91-124 121-156 (331)
273 1u0l_A Probable GTPase ENGC; p 96.3 0.0021 7.1E-08 55.8 3.1 31 86-116 162-192 (301)
274 1a5t_A Delta prime, HOLB; zinc 96.2 0.0064 2.2E-07 53.1 5.9 29 92-120 23-51 (334)
275 1pzn_A RAD51, DNA repair and r 96.2 0.0033 1.1E-07 55.9 4.1 26 92-117 130-155 (349)
276 3nbx_X ATPase RAVA; AAA+ ATPas 96.2 0.0017 5.6E-08 61.0 2.1 29 91-119 39-67 (500)
277 3p32_A Probable GTPase RV1496/ 96.2 0.0049 1.7E-07 54.6 5.0 34 92-125 78-116 (355)
278 3pxi_A Negative regulator of g 96.2 0.0035 1.2E-07 60.8 4.3 34 95-128 523-561 (758)
279 2yhs_A FTSY, cell division pro 96.2 0.0031 1.1E-07 59.4 3.8 36 92-127 292-332 (503)
280 3fvq_A Fe(3+) IONS import ATP- 96.2 0.003 1E-07 57.0 3.6 26 92-117 29-54 (359)
281 2ewv_A Twitching motility prot 96.1 0.0032 1.1E-07 56.5 3.7 26 92-117 135-160 (372)
282 2bbs_A Cystic fibrosis transme 96.1 0.0028 9.7E-08 55.2 3.0 26 92-117 63-88 (290)
283 2gza_A Type IV secretion syste 96.1 0.0023 8E-08 57.0 2.6 27 92-118 174-200 (361)
284 2v3c_C SRP54, signal recogniti 96.1 0.0025 8.4E-08 58.6 2.7 35 93-127 99-138 (432)
285 3nh6_A ATP-binding cassette SU 96.1 0.0021 7.2E-08 56.6 2.2 26 92-117 79-104 (306)
286 1z47_A CYSA, putative ABC-tran 96.1 0.0035 1.2E-07 56.4 3.6 26 92-117 40-65 (355)
287 2zr9_A Protein RECA, recombina 96.1 0.0048 1.6E-07 55.0 4.4 36 91-126 59-99 (349)
288 3rlf_A Maltose/maltodextrin im 96.1 0.0035 1.2E-07 57.0 3.6 26 92-117 28-53 (381)
289 2yyz_A Sugar ABC transporter, 96.1 0.0035 1.2E-07 56.4 3.6 26 92-117 28-53 (359)
290 2pjz_A Hypothetical protein ST 96.1 0.003 1E-07 54.3 2.9 26 92-117 29-54 (263)
291 1w5s_A Origin recognition comp 96.1 0.0057 2E-07 53.6 4.8 26 92-117 49-76 (412)
292 2it1_A 362AA long hypothetical 96.0 0.0037 1.3E-07 56.3 3.6 26 92-117 28-53 (362)
293 3k1j_A LON protease, ATP-depen 96.0 0.0031 1E-07 59.9 3.1 28 92-119 59-86 (604)
294 1v43_A Sugar-binding transport 96.0 0.004 1.4E-07 56.3 3.6 26 92-117 36-61 (372)
295 1zu4_A FTSY; GTPase, signal re 96.0 0.0044 1.5E-07 54.6 3.8 36 92-127 104-144 (320)
296 1g29_1 MALK, maltose transport 96.0 0.0041 1.4E-07 56.2 3.6 26 92-117 28-53 (372)
297 2npi_A Protein CLP1; CLP1-PCF1 96.0 0.0036 1.2E-07 58.0 3.2 26 92-117 137-162 (460)
298 3tui_C Methionine import ATP-b 96.0 0.0042 1.4E-07 56.2 3.6 26 92-117 53-78 (366)
299 2ce2_X GTPase HRAS; signaling 95.9 0.0043 1.5E-07 46.4 3.1 24 93-116 3-26 (166)
300 3jvv_A Twitching mobility prot 95.9 0.0045 1.5E-07 55.4 3.7 26 92-117 122-147 (356)
301 2rcn_A Probable GTPase ENGC; Y 95.9 0.0047 1.6E-07 55.6 3.8 30 87-116 209-238 (358)
302 3d31_A Sulfate/molybdate ABC t 95.9 0.0031 1.1E-07 56.5 2.6 26 92-117 25-50 (348)
303 2b8t_A Thymidine kinase; deoxy 95.9 0.0052 1.8E-07 51.7 3.8 26 92-117 11-36 (223)
304 3dm5_A SRP54, signal recogniti 95.9 0.0078 2.7E-07 55.7 5.3 37 93-129 100-141 (443)
305 3kl4_A SRP54, signal recogniti 95.9 0.004 1.4E-07 57.5 3.3 37 92-128 96-137 (433)
306 3sop_A Neuronal-specific septi 95.9 0.005 1.7E-07 52.8 3.6 24 94-117 3-26 (270)
307 1ko7_A HPR kinase/phosphatase; 95.9 0.0058 2E-07 54.2 4.1 37 92-129 143-179 (314)
308 1oix_A RAS-related protein RAB 95.9 0.005 1.7E-07 48.9 3.4 24 94-117 30-53 (191)
309 3gd7_A Fusion complex of cysti 95.9 0.0048 1.6E-07 56.1 3.6 25 92-116 46-70 (390)
310 1qvr_A CLPB protein; coiled co 95.9 0.0046 1.6E-07 60.9 3.7 31 94-124 589-622 (854)
311 2zts_A Putative uncharacterize 95.9 0.0062 2.1E-07 49.5 3.9 25 91-115 28-52 (251)
312 1kao_A RAP2A; GTP-binding prot 95.9 0.0051 1.7E-07 46.2 3.1 25 92-116 2-26 (167)
313 1yrb_A ATP(GTP)binding protein 95.8 0.0073 2.5E-07 49.9 4.3 35 91-125 12-50 (262)
314 2dyk_A GTP-binding protein; GT 95.8 0.0055 1.9E-07 46.0 3.3 23 94-116 2-24 (161)
315 2z43_A DNA repair and recombin 95.8 0.0059 2E-07 53.3 3.9 35 92-126 106-151 (324)
316 1u8z_A RAS-related protein RAL 95.8 0.0054 1.8E-07 46.1 3.1 25 92-116 3-27 (168)
317 1u94_A RECA protein, recombina 95.8 0.0073 2.5E-07 54.1 4.5 35 91-125 61-100 (356)
318 2wjg_A FEOB, ferrous iron tran 95.8 0.005 1.7E-07 47.8 3.0 25 91-115 5-29 (188)
319 2f9l_A RAB11B, member RAS onco 95.8 0.006 2E-07 48.5 3.4 23 94-116 6-28 (199)
320 1oxx_K GLCV, glucose, ABC tran 95.8 0.0032 1.1E-07 56.5 1.9 26 92-117 30-55 (353)
321 1j8m_F SRP54, signal recogniti 95.8 0.0059 2E-07 53.2 3.6 34 93-126 98-136 (297)
322 2wji_A Ferrous iron transport 95.8 0.0054 1.8E-07 47.2 3.0 23 93-115 3-25 (165)
323 2r2a_A Uncharacterized protein 95.7 0.0067 2.3E-07 50.0 3.7 24 93-116 5-28 (199)
324 2qm8_A GTPase/ATPase; G protei 95.7 0.0065 2.2E-07 53.7 3.8 26 92-117 54-79 (337)
325 1ls1_A Signal recognition part 95.7 0.0066 2.3E-07 52.7 3.8 35 92-126 97-136 (295)
326 1zcb_A G alpha I/13; GTP-bindi 95.7 0.0054 1.8E-07 55.1 3.2 24 92-115 32-55 (362)
327 3hr8_A Protein RECA; alpha and 95.7 0.0065 2.2E-07 54.6 3.8 36 91-126 59-99 (356)
328 2i1q_A DNA repair and recombin 95.7 0.0061 2.1E-07 52.8 3.4 25 92-116 97-121 (322)
329 2gj8_A MNME, tRNA modification 95.7 0.0064 2.2E-07 47.4 3.2 25 92-116 3-27 (172)
330 3e1s_A Exodeoxyribonuclease V, 95.7 0.01 3.5E-07 56.3 5.2 35 83-117 194-228 (574)
331 1z2a_A RAS-related protein RAB 95.7 0.0072 2.5E-07 45.6 3.4 24 93-116 5-28 (168)
332 1p9r_A General secretion pathw 95.7 0.0071 2.4E-07 55.4 3.9 28 91-118 165-192 (418)
333 2ged_A SR-beta, signal recogni 95.6 0.0085 2.9E-07 46.8 3.8 25 92-116 47-71 (193)
334 1pui_A ENGB, probable GTP-bind 95.6 0.0036 1.2E-07 49.8 1.6 26 90-115 23-48 (210)
335 3f9v_A Minichromosome maintena 95.6 0.0032 1.1E-07 59.9 1.6 29 95-123 329-357 (595)
336 1nrj_B SR-beta, signal recogni 95.6 0.0085 2.9E-07 47.9 3.8 27 91-117 10-36 (218)
337 1c1y_A RAS-related protein RAP 95.6 0.0071 2.4E-07 45.6 3.1 25 92-116 2-26 (167)
338 1xx6_A Thymidine kinase; NESG, 95.6 0.0089 3E-07 49.0 3.8 26 92-117 7-32 (191)
339 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.0048 1.6E-07 54.5 2.3 26 92-117 170-195 (330)
340 1ek0_A Protein (GTP-binding pr 95.6 0.0063 2.1E-07 45.9 2.6 24 93-116 3-26 (170)
341 1t9h_A YLOQ, probable GTPase E 95.6 0.0036 1.2E-07 55.1 1.5 29 88-116 168-196 (307)
342 3con_A GTPase NRAS; structural 95.5 0.0061 2.1E-07 47.5 2.6 26 91-116 19-44 (190)
343 2www_A Methylmalonic aciduria 95.5 0.011 3.7E-07 52.4 4.5 25 93-117 74-98 (349)
344 1knx_A Probable HPR(Ser) kinas 95.5 0.007 2.4E-07 53.7 3.2 37 92-129 146-182 (312)
345 2lkc_A Translation initiation 95.5 0.0095 3.3E-07 45.6 3.6 24 92-115 7-30 (178)
346 2xxa_A Signal recognition part 95.5 0.012 4E-07 54.1 4.8 34 93-126 100-139 (433)
347 1p6x_A Thymidine kinase; P-loo 95.5 0.0038 1.3E-07 55.8 1.5 29 91-119 5-33 (334)
348 1yqt_A RNAse L inhibitor; ATP- 95.5 0.0076 2.6E-07 56.7 3.6 26 92-117 46-71 (538)
349 3lda_A DNA repair protein RAD5 95.5 0.0081 2.8E-07 54.7 3.6 25 92-116 177-201 (400)
350 2zej_A Dardarin, leucine-rich 95.5 0.0072 2.5E-07 47.4 2.8 22 94-115 3-24 (184)
351 2erx_A GTP-binding protein DI- 95.4 0.0086 2.9E-07 45.2 2.9 23 93-115 3-25 (172)
352 1upt_A ARL1, ADP-ribosylation 95.4 0.011 3.8E-07 44.8 3.5 24 92-115 6-29 (171)
353 3b5x_A Lipid A export ATP-bind 95.4 0.0086 2.9E-07 56.5 3.5 26 92-117 368-393 (582)
354 3bh0_A DNAB-like replicative h 95.4 0.012 3.9E-07 51.4 4.0 35 91-125 66-105 (315)
355 1tf7_A KAIC; homohexamer, hexa 95.4 0.0093 3.2E-07 55.5 3.6 36 91-126 37-78 (525)
356 1xp8_A RECA protein, recombina 95.4 0.013 4.5E-07 52.6 4.4 36 91-126 72-112 (366)
357 1z0j_A RAB-22, RAS-related pro 95.3 0.011 3.8E-07 44.6 3.4 25 92-116 5-29 (170)
358 1z08_A RAS-related protein RAB 95.3 0.011 3.9E-07 44.7 3.4 23 94-116 7-29 (170)
359 1ky3_A GTP-binding protein YPT 95.3 0.011 3.9E-07 45.1 3.4 25 92-116 7-31 (182)
360 3q72_A GTP-binding protein RAD 95.3 0.012 4E-07 44.5 3.4 22 93-114 2-23 (166)
361 3b60_A Lipid A export ATP-bind 95.3 0.0082 2.8E-07 56.7 3.0 26 92-117 368-393 (582)
362 1g16_A RAS-related protein SEC 95.3 0.012 4E-07 44.5 3.4 22 94-115 4-25 (170)
363 1svi_A GTP-binding protein YSX 95.3 0.012 4.2E-07 45.8 3.6 24 92-115 22-45 (195)
364 3q85_A GTP-binding protein REM 95.3 0.011 3.7E-07 44.8 3.2 21 94-114 3-23 (169)
365 2fn4_A P23, RAS-related protei 95.3 0.01 3.5E-07 45.3 3.1 25 92-116 8-32 (181)
366 2nzj_A GTP-binding protein REM 95.3 0.011 3.8E-07 45.0 3.2 23 93-115 4-26 (175)
367 2a9k_A RAS-related protein RAL 95.3 0.011 3.6E-07 45.4 3.1 26 91-116 16-41 (187)
368 1wms_A RAB-9, RAB9, RAS-relate 95.2 0.012 4.2E-07 44.9 3.4 24 93-116 7-30 (177)
369 2p67_A LAO/AO transport system 95.2 0.013 4.3E-07 51.7 3.8 26 92-117 55-80 (341)
370 1r2q_A RAS-related protein RAB 95.2 0.013 4.5E-07 44.1 3.4 23 93-115 6-28 (170)
371 2obl_A ESCN; ATPase, hydrolase 95.2 0.013 4.6E-07 52.1 4.0 34 85-118 63-96 (347)
372 3clv_A RAB5 protein, putative; 95.2 0.013 4.5E-07 45.2 3.5 24 93-116 7-30 (208)
373 3bc1_A RAS-related protein RAB 95.2 0.013 4.5E-07 45.1 3.4 23 93-115 11-33 (195)
374 2oap_1 GSPE-2, type II secreti 95.2 0.0077 2.6E-07 56.5 2.4 26 92-117 259-284 (511)
375 3pqc_A Probable GTP-binding pr 95.2 0.013 4.6E-07 45.3 3.4 25 92-116 22-46 (195)
376 1z0f_A RAB14, member RAS oncog 95.1 0.014 4.8E-07 44.4 3.4 24 93-116 15-38 (179)
377 3kkq_A RAS-related protein M-R 95.1 0.013 4.3E-07 45.3 3.1 26 91-116 16-41 (183)
378 3tw8_B RAS-related protein RAB 95.1 0.012 4.3E-07 44.8 3.1 23 93-115 9-31 (181)
379 2dpy_A FLII, flagellum-specifi 95.1 0.016 5.6E-07 53.2 4.3 34 85-118 149-182 (438)
380 4dsu_A GTPase KRAS, isoform 2B 95.1 0.014 5E-07 44.8 3.4 23 94-116 5-27 (189)
381 1r8s_A ADP-ribosylation factor 95.1 0.016 5.5E-07 43.6 3.6 22 95-116 2-23 (164)
382 1v5w_A DMC1, meiotic recombina 95.1 0.014 4.8E-07 51.5 3.7 25 92-116 121-145 (343)
383 1m2o_B GTP-binding protein SAR 95.1 0.015 5.1E-07 45.9 3.5 24 92-115 22-45 (190)
384 2r6a_A DNAB helicase, replicat 95.1 0.015 5.2E-07 53.0 4.0 26 92-117 202-227 (454)
385 3t1o_A Gliding protein MGLA; G 95.1 0.012 4.3E-07 45.5 3.0 25 93-117 14-38 (198)
386 1nij_A Hypothetical protein YJ 95.0 0.01 3.5E-07 51.8 2.6 23 94-116 5-27 (318)
387 1yqt_A RNAse L inhibitor; ATP- 95.0 0.013 4.5E-07 55.1 3.6 26 92-117 311-336 (538)
388 2y8e_A RAB-protein 6, GH09086P 95.0 0.015 5.3E-07 44.2 3.4 25 91-115 12-36 (179)
389 1tq4_A IIGP1, interferon-induc 95.0 0.01 3.6E-07 54.3 2.8 24 92-115 68-91 (413)
390 2hxs_A RAB-26, RAS-related pro 95.0 0.015 5E-07 44.5 3.2 24 92-115 5-28 (178)
391 3k53_A Ferrous iron transport 95.0 0.014 4.9E-07 49.2 3.5 25 92-116 2-26 (271)
392 2bov_A RAla, RAS-related prote 95.0 0.014 4.8E-07 45.8 3.2 26 91-116 12-37 (206)
393 2yl4_A ATP-binding cassette SU 95.0 0.0088 3E-07 56.6 2.4 26 92-117 369-394 (595)
394 1m7b_A RND3/RHOE small GTP-bin 95.0 0.015 5.3E-07 45.2 3.4 25 92-116 6-30 (184)
395 2ffh_A Protein (FFH); SRP54, s 95.0 0.015 5.1E-07 53.5 3.7 36 92-127 97-137 (425)
396 1tf7_A KAIC; homohexamer, hexa 95.0 0.016 5.4E-07 53.9 3.9 27 91-117 279-305 (525)
397 2bme_A RAB4A, RAS-related prot 95.0 0.016 5.5E-07 44.7 3.4 24 93-116 10-33 (186)
398 2j37_W Signal recognition part 95.0 0.014 4.7E-07 54.8 3.5 35 93-127 101-140 (504)
399 3ozx_A RNAse L inhibitor; ATP 95.0 0.012 4E-07 55.5 3.1 26 92-117 293-318 (538)
400 3ozx_A RNAse L inhibitor; ATP 95.0 0.011 3.7E-07 55.7 2.8 26 92-117 24-49 (538)
401 1moz_A ARL1, ADP-ribosylation 95.0 0.011 3.8E-07 45.5 2.5 23 92-114 17-39 (183)
402 2efe_B Small GTP-binding prote 94.9 0.017 5.8E-07 44.3 3.4 25 92-116 11-35 (181)
403 2cxx_A Probable GTP-binding pr 94.9 0.015 5.3E-07 44.8 3.2 22 94-115 2-23 (190)
404 3bwd_D RAC-like GTP-binding pr 94.9 0.02 6.8E-07 43.9 3.8 25 92-116 7-31 (182)
405 1w36_D RECD, exodeoxyribonucle 94.9 0.018 6.2E-07 54.8 4.3 35 83-117 154-188 (608)
406 3qf4_B Uncharacterized ABC tra 94.9 0.01 3.5E-07 56.3 2.5 26 92-117 380-405 (598)
407 3j16_B RLI1P; ribosome recycli 94.9 0.015 5E-07 55.7 3.6 26 92-117 102-127 (608)
408 1mh1_A RAC1; GTP-binding, GTPa 94.9 0.018 6E-07 44.2 3.4 23 93-115 5-27 (186)
409 1ksh_A ARF-like protein 2; sma 94.9 0.016 5.6E-07 44.9 3.2 25 91-115 16-40 (186)
410 2g6b_A RAS-related protein RAB 94.9 0.018 6.2E-07 44.0 3.4 24 93-116 10-33 (180)
411 1e2k_A Thymidine kinase; trans 94.9 0.0065 2.2E-07 54.2 0.9 27 92-118 3-29 (331)
412 2oil_A CATX-8, RAS-related pro 94.9 0.018 6.1E-07 45.0 3.4 24 93-116 25-48 (193)
413 3lxx_A GTPase IMAP family memb 94.9 0.014 4.8E-07 48.0 2.9 24 92-115 28-51 (239)
414 3cmw_A Protein RECA, recombina 94.9 0.0087 3E-07 63.5 2.0 35 92-126 1081-1120(1706)
415 3bk7_A ABC transporter ATP-bin 94.8 0.013 4.5E-07 56.0 3.1 26 92-117 116-141 (607)
416 3bk7_A ABC transporter ATP-bin 94.8 0.016 5.4E-07 55.5 3.6 26 92-117 381-406 (607)
417 2atv_A RERG, RAS-like estrogen 94.8 0.02 6.7E-07 45.1 3.6 25 92-116 27-51 (196)
418 2qag_B Septin-6, protein NEDD5 94.8 0.014 4.9E-07 53.7 3.1 25 92-116 39-65 (427)
419 3ihw_A Centg3; RAS, centaurin, 94.8 0.017 5.8E-07 45.5 3.1 28 89-116 16-43 (184)
420 1f6b_A SAR1; gtpases, N-termin 94.8 0.019 6.5E-07 45.7 3.5 25 91-115 23-47 (198)
421 2gf0_A GTP-binding protein DI- 94.8 0.02 6.8E-07 44.6 3.6 24 92-115 7-30 (199)
422 3tkl_A RAS-related protein RAB 94.8 0.02 6.8E-07 44.5 3.4 23 94-116 17-39 (196)
423 1of1_A Thymidine kinase; trans 94.7 0.0087 3E-07 54.3 1.5 28 91-118 47-74 (376)
424 3szr_A Interferon-induced GTP- 94.7 0.014 4.8E-07 55.6 2.9 34 83-116 35-68 (608)
425 4a82_A Cystic fibrosis transme 94.7 0.0089 3E-07 56.4 1.5 26 92-117 366-391 (578)
426 3upu_A ATP-dependent DNA helic 94.7 0.021 7.2E-07 52.1 4.0 24 94-117 46-69 (459)
427 1fzq_A ADP-ribosylation factor 94.7 0.019 6.4E-07 44.9 3.2 25 92-116 15-39 (181)
428 3t5g_A GTP-binding protein RHE 94.7 0.021 7.1E-07 43.9 3.4 24 92-115 5-28 (181)
429 3oes_A GTPase rhebl1; small GT 94.7 0.018 6.1E-07 45.6 3.0 25 92-116 23-47 (201)
430 2fh5_B SR-beta, signal recogni 94.7 0.021 7.3E-07 45.4 3.5 25 92-116 6-30 (214)
431 3dz8_A RAS-related protein RAB 94.7 0.022 7.6E-07 44.6 3.6 25 93-117 23-47 (191)
432 1vg8_A RAS-related protein RAB 94.7 0.021 7.2E-07 44.9 3.4 25 92-116 7-31 (207)
433 2p5s_A RAS and EF-hand domain 94.7 0.021 7.3E-07 45.1 3.4 25 92-116 27-51 (199)
434 2iwr_A Centaurin gamma 1; ANK 94.7 0.015 5E-07 44.7 2.4 25 92-116 6-30 (178)
435 2xtp_A GTPase IMAP family memb 94.6 0.02 6.9E-07 47.5 3.4 25 91-115 20-44 (260)
436 2gf9_A RAS-related protein RAB 94.6 0.022 7.6E-07 44.4 3.4 23 94-116 23-45 (189)
437 4bas_A ADP-ribosylation factor 94.6 0.017 5.8E-07 45.0 2.7 26 90-115 14-39 (199)
438 1x3s_A RAS-related protein RAB 94.6 0.022 7.7E-07 44.1 3.4 26 91-116 13-38 (195)
439 1zj6_A ADP-ribosylation factor 94.6 0.022 7.5E-07 44.3 3.3 24 92-115 15-38 (187)
440 1z06_A RAS-related protein RAB 94.6 0.02 6.8E-07 44.7 3.1 24 92-115 19-42 (189)
441 3qf4_A ABC transporter, ATP-bi 94.6 0.012 4.1E-07 55.8 2.0 26 92-117 368-393 (587)
442 2fg5_A RAB-22B, RAS-related pr 94.6 0.023 7.7E-07 44.7 3.4 25 92-116 22-46 (192)
443 3c5c_A RAS-like protein 12; GD 94.6 0.02 6.9E-07 44.9 3.1 26 91-116 19-44 (187)
444 1z6t_A APAF-1, apoptotic prote 94.6 0.021 7.2E-07 52.9 3.6 24 92-115 146-169 (591)
445 2gk6_A Regulator of nonsense t 94.5 0.032 1.1E-06 53.0 4.9 35 83-117 185-219 (624)
446 4gzl_A RAS-related C3 botulinu 94.5 0.023 8E-07 45.3 3.4 25 91-115 28-52 (204)
447 4ag6_A VIRB4 ATPase, type IV s 94.5 0.025 8.5E-07 50.2 3.9 27 91-117 33-59 (392)
448 2q6t_A DNAB replication FORK h 94.5 0.025 8.6E-07 51.4 4.0 26 92-117 199-224 (444)
449 3j16_B RLI1P; ribosome recycli 94.5 0.021 7.2E-07 54.7 3.6 25 93-117 378-402 (608)
450 2h17_A ADP-ribosylation factor 94.5 0.022 7.4E-07 44.2 3.0 25 92-116 20-44 (181)
451 2fz4_A DNA repair protein RAD2 94.5 0.055 1.9E-06 44.9 5.7 35 86-120 101-135 (237)
452 1zbd_A Rabphilin-3A; G protein 94.5 0.024 8.1E-07 44.6 3.2 23 94-116 9-31 (203)
453 2j9r_A Thymidine kinase; TK1, 94.4 0.028 9.6E-07 47.2 3.8 26 92-117 27-52 (214)
454 2a5j_A RAS-related protein RAB 94.4 0.026 8.8E-07 44.2 3.4 24 93-116 21-44 (191)
455 1zd9_A ADP-ribosylation factor 94.4 0.026 9E-07 44.1 3.4 24 93-116 22-45 (188)
456 3cph_A RAS-related protein SEC 94.4 0.026 9E-07 44.5 3.4 24 92-115 19-42 (213)
457 3reg_A RHO-like small GTPase; 94.4 0.026 9E-07 44.1 3.4 26 91-116 21-46 (194)
458 2bcg_Y Protein YP2, GTP-bindin 94.4 0.026 8.9E-07 44.6 3.4 23 93-115 8-30 (206)
459 2b6h_A ADP-ribosylation factor 94.4 0.024 8.3E-07 44.8 3.2 24 92-115 28-51 (192)
460 1gwn_A RHO-related GTP-binding 94.4 0.026 9E-07 45.4 3.4 25 92-116 27-51 (205)
461 3ice_A Transcription terminati 94.4 0.044 1.5E-06 50.5 5.1 41 77-117 157-198 (422)
462 2a5y_B CED-4; apoptosis; HET: 94.4 0.024 8.2E-07 52.8 3.5 24 92-115 151-174 (549)
463 1f2t_A RAD50 ABC-ATPase; DNA d 94.3 0.035 1.2E-06 43.1 3.9 26 92-117 22-47 (149)
464 2q3h_A RAS homolog gene family 94.3 0.027 9.4E-07 44.2 3.3 25 91-115 18-42 (201)
465 3end_A Light-independent proto 94.3 0.035 1.2E-06 47.3 4.2 34 92-125 40-78 (307)
466 2ew1_A RAS-related protein RAB 94.3 0.029 9.8E-07 45.1 3.4 24 93-116 26-49 (201)
467 4a1f_A DNAB helicase, replicat 94.3 0.033 1.1E-06 49.7 4.0 35 91-125 44-83 (338)
468 2gno_A DNA polymerase III, gam 94.2 0.042 1.4E-06 47.9 4.7 25 93-117 18-42 (305)
469 2fv8_A H6, RHO-related GTP-bin 94.2 0.03 1E-06 44.5 3.4 24 92-115 24-47 (207)
470 3euj_A Chromosome partition pr 94.2 0.031 1.1E-06 52.2 3.9 24 94-117 30-53 (483)
471 2qu8_A Putative nucleolar GTP- 94.2 0.028 9.6E-07 45.6 3.2 24 92-115 28-51 (228)
472 3kjh_A CO dehydrogenase/acetyl 94.2 0.028 9.5E-07 45.5 3.1 32 95-126 2-38 (254)
473 2o52_A RAS-related protein RAB 94.1 0.03 1E-06 44.4 3.2 24 92-115 24-47 (200)
474 2qnr_A Septin-2, protein NEDD5 94.1 0.026 8.8E-07 48.9 3.0 22 94-115 19-40 (301)
475 2h57_A ADP-ribosylation factor 94.1 0.023 8E-07 44.3 2.5 26 92-117 20-45 (190)
476 2il1_A RAB12; G-protein, GDP, 94.1 0.029 9.9E-07 44.1 3.1 23 93-115 26-48 (192)
477 2gco_A H9, RHO-related GTP-bin 94.1 0.033 1.1E-06 44.1 3.4 24 93-116 25-48 (201)
478 2x77_A ADP-ribosylation factor 94.1 0.023 7.9E-07 44.2 2.5 23 92-114 21-43 (189)
479 2fu5_C RAS-related protein RAB 94.1 0.018 6E-07 44.4 1.7 23 94-116 9-31 (183)
480 2atx_A Small GTP binding prote 94.1 0.033 1.1E-06 43.4 3.4 24 93-116 18-41 (194)
481 3cbq_A GTP-binding protein REM 94.1 0.024 8.3E-07 45.1 2.5 22 93-114 23-44 (195)
482 2r8r_A Sensor protein; KDPD, P 94.1 0.036 1.2E-06 47.1 3.7 33 94-126 7-44 (228)
483 2iw3_A Elongation factor 3A; a 94.0 0.029 1E-06 56.7 3.6 24 92-115 460-483 (986)
484 3lxw_A GTPase IMAP family memb 94.0 0.027 9.4E-07 47.0 2.9 24 92-115 20-43 (247)
485 2f7s_A C25KG, RAS-related prot 94.0 0.033 1.1E-06 44.4 3.2 22 94-115 26-47 (217)
486 2hup_A RAS-related protein RAB 94.0 0.035 1.2E-06 44.1 3.4 23 93-115 29-51 (201)
487 3bgw_A DNAB-like replicative h 93.9 0.039 1.3E-06 50.6 3.9 35 91-125 195-234 (444)
488 2j0v_A RAC-like GTP-binding pr 93.9 0.038 1.3E-06 43.9 3.4 25 92-116 8-32 (212)
489 3llu_A RAS-related GTP-binding 93.9 0.037 1.3E-06 43.7 3.3 25 92-116 19-43 (196)
490 2wjy_A Regulator of nonsense t 93.9 0.051 1.7E-06 53.6 4.9 35 83-117 361-395 (800)
491 2j1l_A RHO-related GTP-binding 93.8 0.036 1.2E-06 44.5 3.2 24 92-115 33-56 (214)
492 3q3j_B RHO-related GTP-binding 93.8 0.041 1.4E-06 44.3 3.4 26 91-116 25-50 (214)
493 3cmu_A Protein RECA, recombina 93.7 0.035 1.2E-06 59.9 3.7 37 91-127 1425-1466(2050)
494 3cnl_A YLQF, putative uncharac 93.7 0.053 1.8E-06 46.2 4.1 32 85-116 89-122 (262)
495 3llm_A ATP-dependent RNA helic 93.7 0.044 1.5E-06 45.0 3.5 23 91-113 74-96 (235)
496 4dhe_A Probable GTP-binding pr 93.7 0.023 7.9E-07 45.4 1.7 25 92-116 28-52 (223)
497 2cjw_A GTP-binding protein GEM 93.7 0.048 1.6E-06 43.2 3.6 23 94-116 7-29 (192)
498 3iby_A Ferrous iron transport 93.6 0.042 1.4E-06 46.4 3.3 23 94-116 2-24 (256)
499 4b3f_X DNA-binding protein smu 93.6 0.064 2.2E-06 51.0 4.9 35 83-117 194-229 (646)
500 1sky_E F1-ATPase, F1-ATP synth 93.6 0.053 1.8E-06 50.6 4.2 32 86-117 144-175 (473)
No 1
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.87 E-value=6.8e-22 Score=171.02 Aligned_cols=127 Identities=40% Similarity=0.632 Sum_probs=116.4
Q ss_pred chhhHHHHHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHH
Q 028019 76 PSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155 (215)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~ 155 (215)
...+++...-.+.+.+++..|+|+|+|||||||+++.||+.+|+.++|+|.+++...++.++.++|+..|+..|+..|.+
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~ 110 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETE 110 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHH
Confidence 35678888888888888999999999999999999999999999999999999988833899999999999999999999
Q ss_pred HHHHHHcC-CCeEEEeCCceeechHHHHhhcCCcEEEEECCHHHHHhh
Q 028019 156 VLKQLSSM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM 202 (215)
Q Consensus 156 vL~~L~~~-~~~VLa~G~g~Vl~~~~r~~L~~g~vV~Ld~p~e~l~eR 202 (215)
++..+... .+.||++|+|++.++.++++++.+++|||++|++++.+|
T Consensus 111 ~l~~l~~~~~~~Via~GgG~v~~~~~~~~l~~~~vV~L~a~~e~l~~R 158 (250)
T 3nwj_A 111 ALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHR 158 (250)
T ss_dssp HHHHHHHHCSSEEEECCGGGGGSHHHHHHHTTSEEEEEECCHHHHHHH
T ss_pred HHHHHHhhcCCcEEecCCCeecCHHHHHHHhCCcEEEEECCHHHHHHH
Confidence 99988876 689999999999999999999889999999999999999
No 2
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.87 E-value=1.1e-21 Score=158.22 Aligned_cols=110 Identities=23% Similarity=0.408 Sum_probs=101.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~ 172 (215)
++.|+|+|+|||||||+|+.||+++|++++|.|+++++..| .++.+++...|+..|+..+.+++..+......||++|+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg 83 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG-ADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGG 83 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCC
Confidence 67899999999999999999999999999999999999888 78889999999999999999999999877788999999
Q ss_pred ceeechHHHHhhc-CCcEEEEECCHHHHHhhh
Q 028019 173 GAVQSSANLALLR-HGISLWIDVPPGMVARMD 203 (215)
Q Consensus 173 g~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR~ 203 (215)
|+++++.+++.++ .+++|||++|++++.+|.
T Consensus 84 ~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl 115 (185)
T 3trf_A 84 GVVLDEKNRQQISETGVVIYLTASIDTQLKRI 115 (185)
T ss_dssp TGGGSHHHHHHHHHHEEEEEEECCHHHHHHHH
T ss_pred ceecCHHHHHHHHhCCcEEEEECCHHHHHHHH
Confidence 9999999988886 579999999999999995
No 3
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=3.9e-21 Score=158.06 Aligned_cols=110 Identities=26% Similarity=0.445 Sum_probs=102.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G 171 (215)
+++.|+|+|+|||||||+|+.||+.+|++++|.|+++++..| .++.++|...|+..|+..+.+++..+....++||++|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g-~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~g 102 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH-KTVGELFTERGEAGFRELERNMLHEVAEFENVVISTG 102 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEECC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC-CcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEECC
Confidence 577999999999999999999999999999999999998888 8899999999999999999999999887778999999
Q ss_pred CceeechHHHHhhc-CCcEEEEECCHHHHHhh
Q 028019 172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 172 ~g~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR 202 (215)
+|.+.++.+++.+. .+.+|||++|++++.+|
T Consensus 103 gg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~R 134 (199)
T 3vaa_A 103 GGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRR 134 (199)
T ss_dssp TTGGGSTTHHHHHHHHSEEEEEECCHHHHHHH
T ss_pred CcEEccHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence 99999888888775 68999999999999999
No 4
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.84 E-value=1.7e-20 Score=151.19 Aligned_cols=113 Identities=24% Similarity=0.332 Sum_probs=98.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~ 172 (215)
++.|+|+|+|||||||+|+.||+++|++++|.|+++++..| .++.++|...|+..|+..+..++..+.....+|+.+|+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~ 80 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG-RSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGG 80 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS-SCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCC
Confidence 35699999999999999999999999999999999998887 67778888788888998888888887766678888888
Q ss_pred ceeechHHHHhhcCCcEEEEECCHHHHHhh-hcCC
Q 028019 173 GAVQSSANLALLRHGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 173 g~Vl~~~~r~~L~~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
++++++.+++.++.+.+|||++|++++.+| ..|+
T Consensus 81 ~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~ 115 (184)
T 2iyv_A 81 GAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNT 115 (184)
T ss_dssp TGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCC
T ss_pred cEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCC
Confidence 888888888877667999999999999999 4444
No 5
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.80 E-value=2.5e-19 Score=142.60 Aligned_cols=108 Identities=22% Similarity=0.391 Sum_probs=92.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCe-EEEeC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL-VVCAG 171 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~-VLa~G 171 (215)
...|+|+|+|||||||+|+.||++||++++|+|+++++..| ..+.+++...|+..|+..+.+++..+.....+ |+++|
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g 85 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG-LSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTG 85 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence 46899999999999999999999999999999999998887 77888888889888998888888888766677 89888
Q ss_pred CceeechHHHHhhc-CCcEEEEECCHHHHHhh-hcC
Q 028019 172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS 205 (215)
Q Consensus 172 ~g~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR-~~r 205 (215)
+|++.. .+ |+ .+.+|||++|++++.+| ..|
T Consensus 86 ~g~~~~-~~---l~~~~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 86 GGIVMH-EN---LKGLGTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp GGGGGC-GG---GTTSEEEEEEECCHHHHHHHHCC-
T ss_pred CCEech-hH---HhcCCEEEEEECCHHHHHHHHhcc
Confidence 887776 43 44 57899999999999999 444
No 6
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.80 E-value=3.5e-19 Score=142.88 Aligned_cols=104 Identities=20% Similarity=0.386 Sum_probs=91.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCCc
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~g 173 (215)
+.|+|+|+|||||||+|+.||+++|++++|+|+++++..| .++.++++..|+..|++.+..++..+.....+||++|++
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~ 83 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN-QKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG 83 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT-SCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC-CCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC
Confidence 4799999999999999999999999999999999988877 778888888888889988888888887667789998888
Q ss_pred eeechHHHHhhc-CCcEEEEECCHHHHHhh
Q 028019 174 AVQSSANLALLR-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 174 ~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR 202 (215)
++.+ .+ ++ .+.+|||++|++++.+|
T Consensus 84 ~~~~-~~---l~~~~~~i~l~~~~e~~~~R 109 (175)
T 1via_A 84 FVNV-SN---LEKAGFCIYLKADFEYLKKR 109 (175)
T ss_dssp GGGS-TT---GGGGCEEEEEECCHHHHTTC
T ss_pred Eehh-hH---HhcCCEEEEEeCCHHHHHHH
Confidence 8876 44 44 57999999999999999
No 7
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.79 E-value=5.5e-19 Score=139.90 Aligned_cols=111 Identities=26% Similarity=0.471 Sum_probs=95.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCCc
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~g 173 (215)
+.|+|+|++||||||+|+.|++++|++++|.|++.++..| ..+.+++...|+..|+..+.+++..+.....+||++|++
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~ 79 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG-LSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGG 79 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCC
Confidence 3699999999999999999999999999999999988887 778888877788888888888888887566788887777
Q ss_pred eeechHHHHhhc-CCcEEEEECCHHHHHhh-hcC
Q 028019 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS 205 (215)
Q Consensus 174 ~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR-~~r 205 (215)
..+.+.+++.++ .+.+|||++|++++.+| ..|
T Consensus 80 ~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r 113 (168)
T 2pt5_A 80 LGANEEALNFMKSRGTTVFIDIPFEVFLERCKDS 113 (168)
T ss_dssp HHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCT
T ss_pred EeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCC
Confidence 667777777776 67999999999999999 444
No 8
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.79 E-value=5.1e-19 Score=140.46 Aligned_cols=111 Identities=26% Similarity=0.429 Sum_probs=95.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~ 172 (215)
++.|+|+|+|||||||+|+.||+++|++++|.|.++++..| ..+.+++...|+..|+..+..++..+. ...+||++|+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~ 79 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSG-MTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGG 79 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhC-CCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCC
Confidence 35799999999999999999999999999999999988877 777777777788888888888888776 5678888888
Q ss_pred ceeechHHHHhhc-CCcEEEEECCHHHHHhh-h--cC
Q 028019 173 GAVQSSANLALLR-HGISLWIDVPPGMVARM-D--HS 205 (215)
Q Consensus 173 g~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR-~--~r 205 (215)
|.++.+.+++.++ .+++|||++|++++.+| . .|
T Consensus 80 ~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 80 GMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQ 116 (173)
T ss_dssp TGGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHC
T ss_pred cEEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccC
Confidence 8888888887775 67999999999999999 4 55
No 9
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.78 E-value=9.8e-19 Score=139.08 Aligned_cols=113 Identities=24% Similarity=0.426 Sum_probs=95.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeCC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G~ 172 (215)
+..|+|+|+|||||||+++.||+.++++++|+|.++++..| ..+..+++..|+..|+..+..++..+....+.++++|+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~-~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~~ 82 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGG 82 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC-cCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECCC
Confidence 56899999999999999999999999999999999887776 77788888888888988887888888776778888887
Q ss_pred ceeechHHHHhhc-CCcEEEEECCHHHHHhh-hcCC
Q 028019 173 GAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 173 g~Vl~~~~r~~L~-~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
+.+..+.+++.++ .+++|||++|++++.+| ..|+
T Consensus 83 ~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~ 118 (173)
T 1kag_A 83 GSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDK 118 (173)
T ss_dssp TGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC----
T ss_pred eEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCC
Confidence 7777777777776 58999999999999999 4443
No 10
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.56 E-value=3.8e-14 Score=112.96 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=75.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHH------HhCCCchHHHHhhhhhHHHHHHHHHHHHHHH-cC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE------AAGGESAAKAFRESDEKGYQQAETEVLKQLS-SM 163 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~------~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~-~~ 163 (215)
.++..|+|+|++||||||+++.|++.+|+.+++.|++.+. ..| ..+.+ ..+...++..+.. +..+. ..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~~-~~~~~~~~ 80 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG-EPLND---DDRKPWLQALNDA-AFAMQRTN 80 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTT-CCCCH---HHHHHHHHHHHHH-HHHHHHHC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcC-cCCCc---cccccHHHHHHHH-HHHHHhcC
Confidence 3567899999999999999999999999999999997532 234 33221 2234455655554 33443 33
Q ss_pred CCeEEEeCCceeechHHHHhhc-C--C-cEEEEECCHHHHHhh-hcCC
Q 028019 164 GRLVVCAGNGAVQSSANLALLR-H--G-ISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 164 ~~~VLa~G~g~Vl~~~~r~~L~-~--g-~vV~Ld~p~e~l~eR-~~rg 206 (215)
..+|++++. ..+.+++.++ . + .+|||++|++++.+| ..|+
T Consensus 81 ~~~vi~~~~---~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~ 125 (175)
T 1knq_A 81 KVSLIVCSA---LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARK 125 (175)
T ss_dssp SEEEEECCC---CSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTST
T ss_pred CcEEEEeCc---hHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcc
Confidence 456776643 3466677665 2 3 799999999999999 4554
No 11
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.55 E-value=1.1e-14 Score=115.97 Aligned_cols=116 Identities=11% Similarity=0.047 Sum_probs=73.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceee--cchhHHHHhCCC-------chHHHHhhhhhHHHHHHHHHH---HHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAGGE-------SAAKAFRESDEKGYQQAETEV---LKQ 159 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld--~D~li~~~~G~~-------si~e~~~~~ge~~fr~~e~~v---L~~ 159 (215)
.++.|+|+|+|||||||+|+.|+++++..+++ .|.+++...+.. .+.+.+...++..|+..+..+ +..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA 81 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence 46789999999999999999999999988765 788776543310 111111122344566555443 344
Q ss_pred HHcCCC-eEEEeCCceee-----chHHHHhhc-CC-cEEEEECCHHHHHhh-hcCCCCCC
Q 028019 160 LSSMGR-LVVCAGNGAVQ-----SSANLALLR-HG-ISLWIDVPPGMVARM-DHSGFPES 210 (215)
Q Consensus 160 L~~~~~-~VLa~G~g~Vl-----~~~~r~~L~-~g-~vV~Ld~p~e~l~eR-~~rg~~~~ 210 (215)
+...+. .|+++ .+. .+.+++.++ .. .+|||++|++++.+| ..|+..+.
T Consensus 82 ~~~~g~~vi~~~---~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~~~~~ 138 (178)
T 1qhx_A 82 MARAGARIIIDD---VFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRVA 138 (178)
T ss_dssp HHHTTCEEEEEE---CCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSCT
T ss_pred HHhcCCeEEEEe---ccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhCCccc
Confidence 444443 44443 222 123455555 34 678999999999999 56665544
No 12
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.52 E-value=1.5e-14 Score=120.22 Aligned_cols=110 Identities=14% Similarity=0.174 Sum_probs=72.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH------hCCCchHHHHhhhhhHHHHHHHHHHHHHHHc---
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEKGYQQAETEVLKQLSS--- 162 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~------~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~--- 162 (215)
+++.|+|+|+|||||||+|+.||+.+|++++++|+++++. .| ..+.+++.. |+..+++...+++.....
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g-~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~ 81 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIG-LEAKSIIES-GNFVGDEIVLGLVKEKFDLGV 81 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CC-HHHHHHHHH-TCCCCHHHHHHHHHHHHHTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHH-HHHHHHHHC-CCcCCHHHHHHHHHHHHhccc
Confidence 4578999999999999999999999999999999998865 23 445555543 444445555555544332
Q ss_pred -CCCeEEEeCCceeec---hHHHH-hhc-----CCcEEEEECCHHHHHhh-hcCC
Q 028019 163 -MGRLVVCAGNGAVQS---SANLA-LLR-----HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 163 -~~~~VLa~G~g~Vl~---~~~r~-~L~-----~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
...+|+. | .... ...+. ++. .+++|||++|++++.+| ..|+
T Consensus 82 ~~~~~i~d-g--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 82 CVNGFVLD-G--FPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC 133 (217)
T ss_dssp TTTCEEEE-S--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred cCCCEEEe-C--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 1223332 2 1111 12222 221 35899999999999999 4554
No 13
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.52 E-value=4.7e-14 Score=110.15 Aligned_cols=109 Identities=17% Similarity=0.104 Sum_probs=70.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCC--C---c----hHHHHhhhhhHHHHHHHHHHHHHHHcCC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--E---S----AAKAFRESDEKGYQQAETEVLKQLSSMG 164 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~--~---s----i~e~~~~~ge~~fr~~e~~vL~~L~~~~ 164 (215)
+.|+|+|+|||||||+|+.| +.+|+++++.|+++.+.... . . ...+++..++..+.......+.. ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 78 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT--SNH 78 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS--CCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh--cCC
Confidence 57999999999999999999 99999999999988775420 0 1 11122223444444333222211 233
Q ss_pred CeEEEeCCceeechHHHHhhc-----CCcEEEEECCHHHHHhh-hcCCCC
Q 028019 165 RLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSGFP 208 (215)
Q Consensus 165 ~~VLa~G~g~Vl~~~~r~~L~-----~g~vV~Ld~p~e~l~eR-~~rg~~ 208 (215)
..||..| . ..+.+++.++ ..++|||++|++++.+| ..|+.+
T Consensus 79 ~~vi~dg--~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~ 125 (179)
T 3lw7_A 79 DLVVFDG--V-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRS 125 (179)
T ss_dssp SCEEEEC--C-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC--
T ss_pred CeEEEeC--C-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCC
Confidence 4455554 3 5566666554 23799999999999999 666654
No 14
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.50 E-value=4.5e-14 Score=117.76 Aligned_cols=113 Identities=11% Similarity=0.081 Sum_probs=72.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh-CC----CchHHHHhhhhhHHHHHHHHH-HHHHHHc--C
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETE-VLKQLSS--M 163 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~-G~----~si~e~~~~~ge~~fr~~e~~-vL~~L~~--~ 163 (215)
+++.|+|+|+|||||||+|+.||+.+|++++++|+++.... ++ ..+.+++.. |+..+++.... +...+.. .
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~~ 84 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GKLIPDDVMTRLALHELKNLTQ 84 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHTCTT
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhcccC
Confidence 46789999999999999999999999999999999887643 21 223333322 33333333333 2344442 3
Q ss_pred CCeEEEeCCceeechHHHHhh-cCCcEEEEECCHHHHHhh-hcC
Q 028019 164 GRLVVCAGNGAVQSSANLALL-RHGISLWIDVPPGMVARM-DHS 205 (215)
Q Consensus 164 ~~~VLa~G~g~Vl~~~~r~~L-~~g~vV~Ld~p~e~l~eR-~~r 205 (215)
..+|+....+.+....++..+ ..+++|||++|.+++.+| ..|
T Consensus 85 ~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R 128 (227)
T 1zd8_A 85 YSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTAR 128 (227)
T ss_dssp SCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCE
T ss_pred CCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcC
Confidence 456665433332222223322 357999999999999999 444
No 15
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.49 E-value=6.7e-14 Score=116.48 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=69.0
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhC--CCchHHHHhhhhhHH--HH----------------
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKG--YQ---------------- 150 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G--~~si~e~~~~~ge~~--fr---------------- 150 (215)
++...|.|.|++||||||+|+.||++||++|+| ++++..... +.+. +.+...++.. |+
T Consensus 4 m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 81 (201)
T 3fdi_A 4 MKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSK-EVLERFDEKPMNFAFIPVPAGGTTISLEQD 81 (201)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCH-HHHHHHhhhchhHHHHHhccccccccccHH
Confidence 456789999999999999999999999999999 666654322 1332 4455555543 22
Q ss_pred --HHHHHHHHHHH--cCCCeEEEe-CCceeechHHHHhhcCCcEEEEECCHHHHHhh
Q 028019 151 --QAETEVLKQLS--SMGRLVVCA-GNGAVQSSANLALLRHGISLWIDVPPGMVARM 202 (215)
Q Consensus 151 --~~e~~vL~~L~--~~~~~VLa~-G~g~Vl~~~~r~~L~~g~vV~Ld~p~e~l~eR 202 (215)
..+.+++.+++ ..+++|+.. ++++|+. .+ +++++|||++|++++.+|
T Consensus 82 ~~~~~~~~i~~la~~~~~~~Vi~Gr~g~~vl~-~~----~~~~~V~L~A~~e~r~~R 133 (201)
T 3fdi_A 82 IAIRQFNFIRKKANEEKESFVIVGRCAEEILS-DN----PNMISAFILGDKDTKTKR 133 (201)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEESTTHHHHTT-TC----TTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEECCcchhcC-CC----CCeEEEEEECCHHHHHHH
Confidence 56788888998 777788864 3444442 21 246899999999999999
No 16
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.48 E-value=3.7e-14 Score=115.84 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=71.4
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH-hCCCc----hHHHHhhhhhHHHHHHHHHHHHHHHc-
Q 028019 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGGES----AAKAFRESDEKGYQQAETEVLKQLSS- 162 (215)
Q Consensus 89 ~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~-~G~~s----i~e~~~~~ge~~fr~~e~~vL~~L~~- 162 (215)
...+++.|+|+|+|||||||+|+.|++.+|++++++|+++++. .++.. +.+++. .|+..++.....++.....
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~~ 94 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDRLNN 94 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHH-cCCcccHHHHHHHHHHHHhc
Confidence 3457789999999999999999999999999999999987763 22122 223332 2333344444444444332
Q ss_pred ---CCCeEEEeCCceeechHHH----Hhhc-----CCcEEEEECCHHHHHhh-hcCCC
Q 028019 163 ---MGRLVVCAGNGAVQSSANL----ALLR-----HGISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 163 ---~~~~VLa~G~g~Vl~~~~r----~~L~-----~g~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
...+|+. | ...+.... +++. .+.+|||++|++++.+| ..|+.
T Consensus 95 ~~~~~~vIld-g--~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r 149 (201)
T 2cdn_A 95 PDAANGFILD-G--YPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGR 149 (201)
T ss_dssp GGGTTCEEEE-S--CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCC
T ss_pred ccCCCeEEEE-C--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 1223332 1 11111111 1232 35899999999999999 55554
No 17
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.48 E-value=5.2e-14 Score=112.84 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=70.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH-hCC----CchHHHHhhhhhHHHHHHHHHHHHHHHcCCCe
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~-~G~----~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~ 166 (215)
++..|+|+|+|||||||+|+.|++.+|++++++|+++++. .++ ..+.+++.. |+..++..+.+++...... .+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~l~~-~~ 80 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMER-GDLVPDDLILELIREELAE-RV 80 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHCCS-EE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHhcC-CE
Confidence 4678999999999999999999999999999999888764 221 223344432 4444454455555555443 24
Q ss_pred EEEeCCceeechHHHH----hhc-----CCcEEEEECCHHHHHhh
Q 028019 167 VVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM 202 (215)
Q Consensus 167 VLa~G~g~Vl~~~~r~----~L~-----~g~vV~Ld~p~e~l~eR 202 (215)
|+. | ......++. ++. .+.+|||++|++++.+|
T Consensus 81 i~d-g--~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R 122 (186)
T 3cm0_A 81 IFD-G--FPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRR 122 (186)
T ss_dssp EEE-S--CCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHH
T ss_pred EEe-C--CCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHH
Confidence 443 2 222222222 222 35899999999999999
No 18
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.48 E-value=1e-14 Score=118.32 Aligned_cols=108 Identities=12% Similarity=0.185 Sum_probs=65.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH-hCCceeecchhHHHHhCCCchHHHHhhhhhHHHH--HHHHHHHHHHHcCCCeEE
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA-LRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ--QAETEVLKQLSSMGRLVV 168 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~-Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr--~~e~~vL~~L~~~~~~VL 168 (215)
+++.|+|+|+|||||||+|+.||+. +|++++|+|+++++........+.+ +..+. ..+..++..+.. ++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~~----~~~~~~r~~~~~~~~~l~~----~~ 80 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTEL----DTHIIEEKDEDRLLDFMEP----IM 80 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC----------CCCCCHHHHHHHHHHHHH----HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHHh----hhcccCCCCHHHHHHHHHH----HH
Confidence 5778999999999999999999999 7999999999988742101111111 11111 122222332221 01
Q ss_pred EeCCceeechHHHHhhc---CCcEEEEECCHHHHHhh-hcCCC
Q 028019 169 CAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 169 a~G~g~Vl~~~~r~~L~---~g~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
.+++|++++..++.+++ .+.+|||++|.+++.+| ..|++
T Consensus 81 ~~~g~~vi~~~~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~ 123 (184)
T 1y63_A 81 VSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQY 123 (184)
T ss_dssp TSSSEEEEECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred hccCCEEEeCchHhhhhhccCCEEEEEECCHHHHHHHHHhCCC
Confidence 01223333333333343 46899999999999999 56654
No 19
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.47 E-value=2.2e-14 Score=115.24 Aligned_cols=41 Identities=22% Similarity=0.201 Sum_probs=37.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
+++.|+|+|+|||||||+++.|++.+|+++++.|.+++...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~ 44 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMF 44 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHH
Confidence 56789999999999999999999999999999999877654
No 20
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.47 E-value=1.3e-13 Score=109.18 Aligned_cols=111 Identities=11% Similarity=0.114 Sum_probs=71.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH-HhCCceeecchhHHHHhCCCchH--HHHhhhhhHHHHHHHHHHHHHHH---cCCCe
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLAD-ALRYYYFDSDSLVFEAAGGESAA--KAFRESDEKGYQQAETEVLKQLS---SMGRL 166 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~-~Lg~~~ld~D~li~~~~G~~si~--e~~~~~ge~~fr~~e~~vL~~L~---~~~~~ 166 (215)
++.|+|+|+|||||||+|+.|++ .+|+.+++.|.++....+ .+.. ..+...++..++.....++.... ..+..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 80 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG 80 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhC-CCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCe
Confidence 46799999999999999999999 689999999998877655 2111 11223344445554445555555 33444
Q ss_pred EEEeCCceeechHHHHhh----c-CC---cEEEEECCHHHHHhh-hcCC
Q 028019 167 VVCAGNGAVQSSANLALL----R-HG---ISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 167 VLa~G~g~Vl~~~~r~~L----~-~g---~vV~Ld~p~e~l~eR-~~rg 206 (215)
||..+ .......++.+ + .+ .+|||++|.+++.+| ..|+
T Consensus 81 vi~d~--~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~ 127 (181)
T 1ly1_A 81 VIISD--TNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (181)
T ss_dssp EEECS--CCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred EEEeC--CCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccc
Confidence 44322 22222233322 1 22 689999999999999 4554
No 21
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.45 E-value=2e-12 Score=105.95 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=75.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHH------HhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE------AAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~------~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~ 165 (215)
++..|+|+|++||||||+++.|++.+|+.+++.|++... ..| ....+ ......++..+..+...+.....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~~~~~~~~~g~~ 103 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRG-IPLTD---EDRWPWLRSLAEWMDARADAGVS 103 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTT-CCCCH---HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcC-CCCCC---cccccHHHHHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999999987532 122 22111 11233455555555555544455
Q ss_pred eEEEeCCceeechHHHHhhc----CCcEEEEECCHHHHHhh-hcCCC
Q 028019 166 LVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 166 ~VLa~G~g~Vl~~~~r~~L~----~g~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
.|+.++ ...+..++.++ ...+|||++|++++.+| ..|+.
T Consensus 104 viid~~---~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~ 147 (200)
T 4eun_A 104 TIITCS---ALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREG 147 (200)
T ss_dssp EEEEEC---CCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSC
T ss_pred EEEEch---hhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhccc
Confidence 777654 34466676665 24789999999999999 55543
No 22
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.45 E-value=3.3e-13 Score=108.54 Aligned_cols=111 Identities=12% Similarity=0.138 Sum_probs=68.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh-CC----CchHHHHhhhhhHHHHHHHHHHH----HHHHc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETEVL----KQLSS 162 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~-G~----~si~e~~~~~ge~~fr~~e~~vL----~~L~~ 162 (215)
++..|+|+|+|||||||+|+.||+.+|++++|.|+++.... ++ ..+.+++. .|+..+.+.....+ .....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhccc
Confidence 67899999999999999999999999999999999877632 11 22333333 23322222222222 22222
Q ss_pred CCCeEEEeCCceeechHHHHh----hc-CCcEEEEECCHHHHHhh-hcC
Q 028019 163 MGRLVVCAGNGAVQSSANLAL----LR-HGISLWIDVPPGMVARM-DHS 205 (215)
Q Consensus 163 ~~~~VLa~G~g~Vl~~~~r~~----L~-~g~vV~Ld~p~e~l~eR-~~r 205 (215)
.+..+|..| .......++. +. .+.+|||++|++++.+| ..|
T Consensus 87 ~~~~vi~d~--~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R 133 (196)
T 2c95_A 87 TSKGFLIDG--YPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKR 133 (196)
T ss_dssp TCSCEEEES--CCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHH
T ss_pred cCCcEEEeC--CCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcc
Confidence 223333322 1122222222 23 56899999999999999 444
No 23
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.45 E-value=5.4e-13 Score=106.56 Aligned_cols=115 Identities=15% Similarity=0.187 Sum_probs=70.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhHHHHh---CCC--chHHHHhhhhhHHHHHHHHHH---HH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAA---GGE--SAAKAFRESDEKGYQQAETEV---LK 158 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li~~~~---G~~--si~e~~~~~ge~~fr~~e~~v---L~ 158 (215)
+++.|+|+|+|||||||+++.|+++++ +++++.|+++.+.. | . +..+.+. .....++..+..+ +.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~i~ 79 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEEN-LVSDRDQMRK-MDPETQKRIQKMAGRKIA 79 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTT-SCSSGGGGSS-CCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccC-CCCCHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999 99999998765542 2 2 2222221 1112223333222 33
Q ss_pred HHHcCCCeEEEeCCceeechHH---------HHhhcCCcEEEEECCHHHHHh-h-hc--CCCCC
Q 028019 159 QLSSMGRLVVCAGNGAVQSSAN---------LALLRHGISLWIDVPPGMVAR-M-DH--SGFPE 209 (215)
Q Consensus 159 ~L~~~~~~VLa~G~g~Vl~~~~---------r~~L~~g~vV~Ld~p~e~l~e-R-~~--rg~~~ 209 (215)
.+.....+|+ .|.+....... ...+..+++|||++|++++.+ | .. |+.+.
T Consensus 80 ~~~~~~~vii-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~ 142 (192)
T 1kht_A 80 EMAKESPVAV-DTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDL 142 (192)
T ss_dssp HHHTTSCEEE-ECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSC
T ss_pred hhccCCeEEE-ccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcccCCCc
Confidence 3333444444 56554332221 111235689999999999996 7 44 66543
No 24
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.44 E-value=6.7e-13 Score=106.99 Aligned_cols=113 Identities=10% Similarity=0.046 Sum_probs=69.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh--C---CCchHHHHhhhhhHHHHHHHHHH----HHHHHc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--G---GESAAKAFRESDEKGYQQAETEV----LKQLSS 162 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~--G---~~si~e~~~~~ge~~fr~~e~~v----L~~L~~ 162 (215)
+++.|+|+|+|||||||+|+.|++.+|+++++.|+++.+.. + +..+.+++. .|+..+....... +.....
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~ 89 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIME-RGDLVPSGIVLELLKEAMVASLG 89 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhcccc
Confidence 46789999999999999999999999999999999877653 1 022333332 2322222211111 222222
Q ss_pred CCCeEEEeCCceeechHHHHhh-----cCCcEEEEECCHHHHHhh-hcCCC
Q 028019 163 MGRLVVCAGNGAVQSSANLALL-----RHGISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 163 ~~~~VLa~G~g~Vl~~~~r~~L-----~~g~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
.+..||..| ......++..+ ..+++|||++|++++.+| ..|+.
T Consensus 90 ~~~~vi~dg--~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 90 DTRGFLIDG--YPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp SCSCEEEET--CCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred cCccEEEeC--CCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 233344332 33333333322 246899999999999999 55554
No 25
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.44 E-value=3.4e-13 Score=107.65 Aligned_cols=107 Identities=15% Similarity=0.207 Sum_probs=67.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh-CCC----chHHHHhhhhhHHHHHHHHHHHHHHHc--CCC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGE----SAAKAFRESDEKGYQQAETEVLKQLSS--MGR 165 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~-G~~----si~e~~~~~ge~~fr~~e~~vL~~L~~--~~~ 165 (215)
++.|+|+|+|||||||+|+.|++.+|++++|.|+++.+.. ++. .+.+++.. |...+......++..... ...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~i~~~~~~ 84 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN-GEIVPSIVTVKLLKNAIDANQGK 84 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTSTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999999877653 212 22333322 322223333344443332 222
Q ss_pred eEEEeCCceeechHHHHhh----c----CCcEEEEECCHHHHHhh
Q 028019 166 LVVCAGNGAVQSSANLALL----R----HGISLWIDVPPGMVARM 202 (215)
Q Consensus 166 ~VLa~G~g~Vl~~~~r~~L----~----~g~vV~Ld~p~e~l~eR 202 (215)
.+|..| ......+++.+ . .+++|||++|++++.+|
T Consensus 85 ~vi~d~--~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R 127 (194)
T 1qf9_A 85 NFLVDG--FPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQR 127 (194)
T ss_dssp CEEEET--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHH
T ss_pred CEEEeC--cCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHH
Confidence 333322 23333333322 2 35799999999999999
No 26
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.43 E-value=3.8e-13 Score=111.59 Aligned_cols=107 Identities=12% Similarity=0.154 Sum_probs=69.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH-hCC----CchHHHHhhhhh----HHHHH-HHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDE----KGYQQ-AETEVLKQLS 161 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~-~G~----~si~e~~~~~ge----~~fr~-~e~~vL~~L~ 161 (215)
+++.|+|+|+|||||||+|+.||+.+++.++++|++++.. .++ ..+.+++.. |+ ..+.. .+..+.....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEK-GQLVPDEIVVNMVKERLRQPDA 82 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHSHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHc-CCcCCHHHHHHHHHHHHhhccc
Confidence 4578999999999999999999999999999999988763 111 233334422 21 11222 2333322222
Q ss_pred cCCCeEEEeCCceeechHHHHhhc-----CCcEEEEECCHHHHHhh
Q 028019 162 SMGRLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM 202 (215)
Q Consensus 162 ~~~~~VLa~G~g~Vl~~~~r~~L~-----~g~vV~Ld~p~e~l~eR 202 (215)
....+|+ .| ......++..+. .+++|||++|++++.+|
T Consensus 83 ~~~~~vi-dg--~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R 125 (222)
T 1zak_A 83 QENGWLL-DG--YPRSYSQAMALETLEIRPDTFILLDVPDELLVER 125 (222)
T ss_dssp HHTCEEE-ES--CCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHH
T ss_pred cCCcEEE-EC--CCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHH
Confidence 2346667 33 323333344443 36899999999999999
No 27
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.42 E-value=3.9e-13 Score=107.49 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=65.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh--CCC----chHHHHhhhhhHHHHHHHHHHH----HHH-
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGE----SAAKAFRESDEKGYQQAETEVL----KQL- 160 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~--G~~----si~e~~~~~ge~~fr~~e~~vL----~~L- 160 (215)
++..|+|+|+|||||||+|+.|++.+|+++++.|+++.... ++. .+.+++. .|+..+.+....++ ...
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~ 80 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK-EGKIVPVEITISLLKREMDQTM 80 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhhh
Confidence 46789999999999999999999999999999999887653 111 1223332 23222222222211 111
Q ss_pred H--cCCCeEEEeCCceeechHHHHh----hc----CCcEEEEECCHHHHHhh
Q 028019 161 S--SMGRLVVCAGNGAVQSSANLAL----LR----HGISLWIDVPPGMVARM 202 (215)
Q Consensus 161 ~--~~~~~VLa~G~g~Vl~~~~r~~----L~----~g~vV~Ld~p~e~l~eR 202 (215)
. .....+|.. |......+++. +. .+++|||++|++++.+|
T Consensus 81 ~~~~~~~~vi~d--g~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R 130 (196)
T 1tev_A 81 AANAQKNKFLID--GFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIER 130 (196)
T ss_dssp HHCTTCCEEEEE--SCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHH
T ss_pred ccccCCCeEEEe--CCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHH
Confidence 1 123334432 33333333321 21 34789999999999999
No 28
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.41 E-value=2.2e-13 Score=115.74 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=70.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH--hCCCchHHHHhhhhhH-----------------------
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA--AGGESAAKAFRESDEK----------------------- 147 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~--~G~~si~e~~~~~ge~----------------------- 147 (215)
...|.|.|++||||||+|+.||++||++++|.|.+.+.. .| .+. +.+...++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g-~~~-~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSA-VGE-QFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC--------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcC-CCH-HHHHHHHhhccccHHHHHhccccccccccccc
Confidence 468999999999999999999999999999977654433 22 222 222222221
Q ss_pred --------HHHHHHHHHHHHHHcCCCeEEE-eCCceeec--hHHHHhhcCCcEEEEECCHHHHHhh
Q 028019 148 --------GYQQAETEVLKQLSSMGRLVVC-AGNGAVQS--SANLALLRHGISLWIDVPPGMVARM 202 (215)
Q Consensus 148 --------~fr~~e~~vL~~L~~~~~~VLa-~G~g~Vl~--~~~r~~L~~g~vV~Ld~p~e~l~eR 202 (215)
.....+.+++.+++...++||. +|++++++ +.+ .++++|||++|++++.+|
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~vl~~~~~~----~~~~~VfL~A~~e~r~~R 153 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLDQDEDI----ERLIRIFVYTDKVKKVQR 153 (223)
T ss_dssp ------HHHHHHHHHHHHHHHHHHSCEEEESTTHHHHHHHCTTC----CEEEEEEEECCHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhcccccCC----CCeEEEEEECCHHHHHHH
Confidence 1123556778888877788887 77777763 222 246899999999999999
No 29
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.41 E-value=8.5e-13 Score=109.31 Aligned_cols=111 Identities=12% Similarity=0.104 Sum_probs=69.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH-hCC----CchHHHHhhhhhHHHHHHHHHHHHHHHc----
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDEKGYQQAETEVLKQLSS---- 162 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~-~G~----~si~e~~~~~ge~~fr~~e~~vL~~L~~---- 162 (215)
+++.|+|+|+|||||||+|+.||+.+|++++++|+++++. .++ ..+.+++. .|+..++.....++.....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~l~~~l~~~~~ 81 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMD-QGGLVSDDIMVNMIKDELTNNPA 81 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999999999999988764 221 22333333 2333334444444443332
Q ss_pred -CCCeEEEeCCceeechHHHH----hhc-----CCcEEEEECCHHHHHhh-hcCC
Q 028019 163 -MGRLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 163 -~~~~VLa~G~g~Vl~~~~r~----~L~-----~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
...+|+. | ........+ ++. .+++|||++|++++.+| ..|+
T Consensus 82 ~~~~~i~d-g--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~ 133 (220)
T 1aky_A 82 CKNGFILD-G--FPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRL 133 (220)
T ss_dssp GGSCEEEE-S--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred cCCCeEEe-C--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence 2334443 2 111111111 221 34899999999999999 4443
No 30
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.41 E-value=7e-13 Score=113.58 Aligned_cols=105 Identities=13% Similarity=0.074 Sum_probs=73.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH---hCCcee--ecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCe
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA---LRYYYF--DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~---Lg~~~l--d~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~ 166 (215)
+++.|+|+|+|||||||+|+.|++. +|++++ +.|.+++...+ |...++..++..+...+...... ..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~-------~~~~~e~~~~~~~~~~i~~~l~~-~~ 74 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV-------WKEKYEEFIKKSTYRLIDSALKN-YW 74 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS-------CCGGGHHHHHHHHHHHHHHHHTT-SE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHhhC-CE
Confidence 4678999999999999999999998 789888 88987754432 33345556666666666665555 44
Q ss_pred EEEeCCceeechHHHHhhc--------CCcEEEEECCHHHHHhh-hcCC
Q 028019 167 VVCAGNGAVQSSANLALLR--------HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 167 VLa~G~g~Vl~~~~r~~L~--------~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
||..+ .......+..+. ..++|||++|++++.+| ..|+
T Consensus 75 vIiD~--~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 75 VIVDD--TNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp EEECS--CCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred EEEeC--CcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence 44332 233344444332 25899999999999999 5565
No 31
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.41 E-value=4.7e-13 Score=112.30 Aligned_cols=110 Identities=14% Similarity=0.146 Sum_probs=69.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh-CC----CchHHHHhhhhhHHHHHHHHHHHHHHHcCCCe
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~-G~----~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~ 166 (215)
.++.|+|+|+|||||||+|+.||+++|+.++++|+++++.. ++ ..+.+++. .|+..+++....++.......
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~-- 91 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMD-AGKLVSDEMVLELIEKNLETP-- 91 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTSG--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHH-CCCcCCHHHHHHHHHHHHhcc--
Confidence 56789999999999999999999999999999999887632 10 22333332 233333444444454433221
Q ss_pred EEEeCCceeec--h---HHHH----hh-----cCCcEEEEECCHHHHHhh-hcCC
Q 028019 167 VVCAGNGAVQS--S---ANLA----LL-----RHGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 167 VLa~G~g~Vl~--~---~~r~----~L-----~~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
.+++|++++ + ...+ ++ ..+++|||++|++++.+| ..|.
T Consensus 92 --~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 144 (233)
T 1ak2_A 92 --PCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL 144 (233)
T ss_dssp --GGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE
T ss_pred --cccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 122233332 1 1111 22 146899999999999999 5553
No 32
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.39 E-value=8e-13 Score=105.91 Aligned_cols=101 Identities=21% Similarity=0.225 Sum_probs=65.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHH--HHHHH---HHHHHcCCCe
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQ--AETEV---LKQLSSMGRL 166 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~--~e~~v---L~~L~~~~~~ 166 (215)
+++.|+|+|+|||||||+++.|++.+|+.+++.|+++++... +...++..++. .+..+ +......+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 82 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQL-------YDGYDEEYDCPILDEDRVVDELDNQMREGGV 82 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTC-------EEEEETTTTEEEECHHHHHHHHHHHHHHCCE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcch-------hhhhhhhhcCccCChHHHHHHHHHHHhcCCE
Confidence 567899999999999999999999999999999998887521 11111111110 01111 2222222344
Q ss_pred EEEeCCceeechHHHHhhc---CCcEEEEECCHHHHHhh-hcCCC
Q 028019 167 VVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 167 VLa~G~g~Vl~~~~r~~L~---~g~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
|+.. .++..+. .+.+|||++|++++.+| ..|++
T Consensus 83 vv~~--------~~~~~~~~~~~~~vi~L~~~~e~l~~R~~~r~~ 119 (180)
T 3iij_A 83 IVDY--------HGCDFFPERWFHIVFVLRTDTNVLYERLETRGY 119 (180)
T ss_dssp EEEC--------SCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred EEEe--------chhhhcchhcCCEEEEEECCHHHHHHHHHHcCC
Confidence 4432 2223332 56899999999999999 66664
No 33
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.37 E-value=3.4e-13 Score=121.56 Aligned_cols=110 Identities=21% Similarity=0.269 Sum_probs=83.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh--------------HHHHhCCC-----chHHH-HhhhhhHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--------------VFEAAGGE-----SAAKA-FRESDEKGYQQ 151 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l--------------i~~~~G~~-----si~e~-~~~~ge~~fr~ 151 (215)
+++.|+|+||+||||||||..||++++..+++.|.+ .++..| . ++.+. .+.++...|++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~g-vphhlidi~~~~~e~~s~~~F~~ 117 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGG-VPHHLLGEVDPARGELTPADFRS 117 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTT-CCEESSSCBCGGGCCCCHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcC-CCEeeccccCcccCccCHHHHHH
Confidence 456899999999999999999999999999999987 344433 2 33344 45567788999
Q ss_pred HHHHHHHHHHcCCCeEEEeCCceeechHHHH---------------------hhc-CCcEEEEECCHHHHHhh
Q 028019 152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLA---------------------LLR-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 152 ~e~~vL~~L~~~~~~VLa~G~g~Vl~~~~r~---------------------~L~-~g~vV~Ld~p~e~l~eR 202 (215)
.+.+++..+...+..+|.+||+.+.-...+. .++ ..++|||+++.+++.+|
T Consensus 118 ~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~R 190 (339)
T 3a8t_A 118 LAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDY 190 (339)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHH
Confidence 9988899888777888888876433222211 122 34789999999999999
No 34
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.36 E-value=1.5e-12 Score=106.27 Aligned_cols=104 Identities=16% Similarity=0.167 Sum_probs=65.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhC-CCchHHHHhhh-hhHHHHHHHHHHHHHHHcCCCeEEE
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GESAAKAFRES-DEKGYQQAETEVLKQLSSMGRLVVC 169 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G-~~si~e~~~~~-ge~~fr~~e~~vL~~L~~~~~~VLa 169 (215)
+++.|+|+|++||||||+|+.|++.+|+.+++.|.++..... .......+... ....++.++ ..+.....+|+.
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~----~~~~~~~~vivd 92 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIG----ERLASREPVVVS 92 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHH----HHHTSSSCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHH----HHHhcCCCEEEE
Confidence 356899999999999999999999999999999998643110 00000011111 112222221 112233446665
Q ss_pred eCCceeechHHHHhhc-----CCcEEEEECCHHHHHhh
Q 028019 170 AGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM 202 (215)
Q Consensus 170 ~G~g~Vl~~~~r~~L~-----~g~vV~Ld~p~e~l~eR 202 (215)
++. ..+..++.+. ...+|||++|.+++.+|
T Consensus 93 ~~~---~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R 127 (202)
T 3t61_A 93 CSA---LKRSYRDKLRESAPGGLAFVFLHGSESVLAER 127 (202)
T ss_dssp CCC---CSHHHHHHHHHTSTTCCEEEEEECCHHHHHHH
T ss_pred CCC---CCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHH
Confidence 432 3455555554 14899999999999999
No 35
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.34 E-value=3e-12 Score=106.94 Aligned_cols=109 Identities=15% Similarity=0.176 Sum_probs=67.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh-CCCc----hHHHHhhhhhHHHHHHHHHHHHH-HHc--CCC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGES----AAKAFRESDEKGYQQAETEVLKQ-LSS--MGR 165 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~-G~~s----i~e~~~~~ge~~fr~~e~~vL~~-L~~--~~~ 165 (215)
+.|+|+|+|||||||+++.|++.+|++++++|+++++.. ++.. +.+++. .|+..+.+....++.. +.. ...
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~g~~ 79 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFID-RGDLVPDDITIPMVLETLESKGKDG 79 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHH-cCCcCcHHHHHHHHHHHHhcccCCe
Confidence 368999999999999999999999999999999988762 2122 222232 2322223333333333 332 233
Q ss_pred eEEEeCCceeechHHHHhh---------cCCcEEEEECCHHHHHhh-hcCC
Q 028019 166 LVVCAGNGAVQSSANLALL---------RHGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 166 ~VLa~G~g~Vl~~~~r~~L---------~~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
+|+. | ........+.+ ..+.+|||++|++++.+| ..|+
T Consensus 80 vIlD-g--~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 80 WLLD-G--FPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp EEEE-S--CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred EEEe-C--CcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 4433 2 11111112211 145899999999999999 5555
No 36
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.34 E-value=1.3e-11 Score=100.35 Aligned_cols=110 Identities=12% Similarity=0.197 Sum_probs=64.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh--CCCchHHHHh---hhhhHHHHHHHHHHH----HH-HH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAAKAFR---ESDEKGYQQAETEVL----KQ-LS 161 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~--G~~si~e~~~---~~ge~~fr~~e~~vL----~~-L~ 161 (215)
+++.|+|+|++||||||+++.|++.+|+++++.|+++++.. ++....+.+. ..|+..+.......+ .. +.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~l~ 93 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVK 93 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhhc
Confidence 56789999999999999999999999999999999877642 2233222221 123222222222222 22 22
Q ss_pred cC-CCeEEEeCCce-eechHHHH-hhc-CCcEEEEECCHHHHHhh
Q 028019 162 SM-GRLVVCAGNGA-VQSSANLA-LLR-HGISLWIDVPPGMVARM 202 (215)
Q Consensus 162 ~~-~~~VLa~G~g~-Vl~~~~r~-~L~-~g~vV~Ld~p~e~l~eR 202 (215)
.. ..+|+. |... +..+..++ .+. .+++|||++|++++.+|
T Consensus 94 ~g~~~~i~d-g~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R 137 (203)
T 1ukz_A 94 ANKHKFLID-GFPRKMDQAISFERDIVESKFILFFDCPEDIMLER 137 (203)
T ss_dssp TTCCEEEEE-TCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHH
T ss_pred cCCCeEEEe-CCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 22 233332 2110 00011111 222 57899999999999998
No 37
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.33 E-value=1.1e-11 Score=97.38 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=35.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~ 131 (215)
+.|+|+|+|||||||+++.|++++|+++++.|.+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~ 39 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAK 39 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccch
Confidence 57999999999999999999999999999999887754
No 38
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.33 E-value=7.5e-13 Score=105.57 Aligned_cols=106 Identities=14% Similarity=0.202 Sum_probs=57.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCcee-ecchhHHHHhCCCchHHHHhhhhhH------HHHHHHHHHHHHHHcC-
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFEAAGGESAAKAFRESDEK------GYQQAETEVLKQLSSM- 163 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~l-d~D~li~~~~G~~si~e~~~~~ge~------~fr~~e~~vL~~L~~~- 163 (215)
+++.|+|+|+|||||||+|+.|++.+|++++ +.|.+ | ..+.+++. .|+. .+++...+++..+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~-----g-~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~l~~~ 76 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEM-----G-QALRKLTP-GFSGDPQEHPMWIPLMLDALQYASREA 76 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHH-----H-HHHHHTST-TCCSCGGGSTTHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhh-----H-HHHHHhCc-cccchhhhhHHHHHHHHHHHHHHHHhC
Confidence 5678999999999999999999999999998 53221 1 11222222 1111 1112223334444332
Q ss_pred CCeEEEeCCceeech----HHHHhhc-CCc---EEEEECCHHHHHhh-hcCC
Q 028019 164 GRLVVCAGNGAVQSS----ANLALLR-HGI---SLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 164 ~~~VLa~G~g~Vl~~----~~r~~L~-~g~---vV~Ld~p~e~l~eR-~~rg 206 (215)
+..||.. +.+... ..++.++ .+. .|||++|++++.+| ..|+
T Consensus 77 g~~vi~d--~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~ 126 (183)
T 2vli_A 77 AGPLIVP--VSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDG 126 (183)
T ss_dssp SSCEEEE--ECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-
T ss_pred CCcEEEe--eeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcc
Confidence 4444432 222222 3334444 443 39999999999999 5555
No 39
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.32 E-value=1.2e-11 Score=101.63 Aligned_cols=108 Identities=14% Similarity=0.143 Sum_probs=64.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh-CCCc----hHHHHhhhhhHHHHHHHHHHHH-HHHc---CC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGES----AAKAFRESDEKGYQQAETEVLK-QLSS---MG 164 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~-G~~s----i~e~~~~~ge~~fr~~e~~vL~-~L~~---~~ 164 (215)
+.|+|+|+|||||||+|+.|++++|+++++.|+++.+.. ++.. +.+.+.. |..........++. .+.. ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQ-GNLVPDEVTIGIVHERLSKDDCQK 79 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccCCC
Confidence 368999999999999999999999999999999887743 2111 2222221 21111122222222 2322 23
Q ss_pred CeEEEeCCceeechHHHHh----hc-----CCcEEEEECCHHHHHhh-hcC
Q 028019 165 RLVVCAGNGAVQSSANLAL----LR-----HGISLWIDVPPGMVARM-DHS 205 (215)
Q Consensus 165 ~~VLa~G~g~Vl~~~~r~~----L~-----~g~vV~Ld~p~e~l~eR-~~r 205 (215)
.+|+. | .......... +. .+.+|||++|.+++.+| .+|
T Consensus 80 ~~ild-g--~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 80 GFLLD-G--FPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp CEEEE-S--CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred cEEEe-C--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 34443 2 2222222221 21 35899999999999999 555
No 40
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.32 E-value=3.9e-12 Score=105.44 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=42.7
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESD 145 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~g 145 (215)
--...|.|+|++||||||+|+.|++.+|++++|+|++.++.++ ....++++..|
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~-~~~~~i~~~fG 63 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLE-EVKEKLVELFG 63 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH-HTHHHHHHHHC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHH-HHHHHHHHHhC
Confidence 3457899999999999999999999999999999999887654 23334443333
No 41
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.31 E-value=6.4e-12 Score=103.38 Aligned_cols=108 Identities=13% Similarity=0.140 Sum_probs=64.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh-CCCc----hHHHHhhhhhHHHHHHHHHHH-HHHHc---CC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGES----AAKAFRESDEKGYQQAETEVL-KQLSS---MG 164 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~-G~~s----i~e~~~~~ge~~fr~~e~~vL-~~L~~---~~ 164 (215)
+.|+|+|+|||||||+|+.|++++|+++++.|+++.+.. ++.. +.+++. .|..........++ ..+.. ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYID-KGELVPDEVTIGIVKERLGKDDCER 79 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcccccC
Confidence 368999999999999999999999999999999887743 2111 222222 12111111212222 23322 23
Q ss_pred CeEEEeCCceeechHHHH----hhc-----CCcEEEEECCHHHHHhh-hcC
Q 028019 165 RLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHS 205 (215)
Q Consensus 165 ~~VLa~G~g~Vl~~~~r~----~L~-----~g~vV~Ld~p~e~l~eR-~~r 205 (215)
.+|+. | ......... .+. .+.+|||++|++++.+| ..|
T Consensus 80 ~~ild-g--~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 80 GFLLD-G--FPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp CEEEE-S--CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred CEEEe-C--CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 34443 2 212222222 121 35899999999999999 454
No 42
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.30 E-value=1.4e-11 Score=101.77 Aligned_cols=109 Identities=14% Similarity=0.208 Sum_probs=66.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh--C---CCchHHHHhhhhhHHHHHHHHHHHHH-HHcC---C
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--G---GESAAKAFRESDEKGYQQAETEVLKQ-LSSM---G 164 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~--G---~~si~e~~~~~ge~~fr~~e~~vL~~-L~~~---~ 164 (215)
+.|+|+|+|||||||+|+.|++.+|++++++|+++.+.. | +..+.+++.. |.....+....++.. +... .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~~~ 79 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDA-GKLVTDELVIALVKERIAQEDCRN 79 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHH-TCCCCHHHHHHHHHHHHTSGGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHC-CCcCCHHHHHHHHHHHHhccccCC
Confidence 368999999999999999999999999999999887731 1 1334444432 211111111222222 2221 2
Q ss_pred CeEEEeCCceeechHHHHhhc-----CCcEEEEECCHHHHHhh-hcCC
Q 028019 165 RLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 165 ~~VLa~G~g~Vl~~~~r~~L~-----~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
.+|+ .| ..........|. .+++|||++|.+++.+| ..|+
T Consensus 80 ~~i~-dg--~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~ 124 (214)
T 1e4v_A 80 GFLL-DG--FPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRR 124 (214)
T ss_dssp CEEE-ES--CCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred CEEE-eC--CCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence 3444 23 211222223332 36899999999999999 4443
No 43
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.30 E-value=1.2e-11 Score=104.75 Aligned_cols=110 Identities=11% Similarity=0.079 Sum_probs=66.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCC-Cch----HHHHhhhhhHHHHHHHHHHH-HHHHc---
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ESA----AKAFRESDEKGYQQAETEVL-KQLSS--- 162 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~-~si----~e~~~~~ge~~fr~~e~~vL-~~L~~--- 162 (215)
+++.|+|+|+|||||+|+|+.||+++|++++++++++.+.... ... .++++ .|.....+.-..++ ..+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~-~G~lVpde~~~~lv~~~l~~~~~ 106 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMME-RGELVPLEVVLALLKEAMIKLVD 106 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhccc
Confidence 6778889999999999999999999999999999888775421 112 22221 22211111111112 22222
Q ss_pred C-CCeEEEeCCceeechHHHHhh-----cCCcEEEEECCHHHHHhh-hcC
Q 028019 163 M-GRLVVCAGNGAVQSSANLALL-----RHGISLWIDVPPGMVARM-DHS 205 (215)
Q Consensus 163 ~-~~~VLa~G~g~Vl~~~~r~~L-----~~g~vV~Ld~p~e~l~eR-~~r 205 (215)
. ..+|+. |+.-+....+.| ..+.||+|++|.+++.+| ..|
T Consensus 107 ~~~g~ilD---GfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R 153 (217)
T 3umf_A 107 KNCHFLID---GYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKR 153 (217)
T ss_dssp TCSEEEEE---TBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC
T ss_pred cccCcccc---cCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcc
Confidence 2 234442 332222222222 256899999999999999 454
No 44
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.29 E-value=8.8e-12 Score=99.66 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=62.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh---CCceeecchhHHHHhCCCchHHHHhhhhhH------HHHHHHH-----HHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAFRESDEK------GYQQAET-----EVLKQ 159 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~L---g~~~ld~D~li~~~~G~~si~e~~~~~ge~------~fr~~e~-----~vL~~ 159 (215)
+.|+|+|++||||||+++.|++.+ |++++++|+......| ..+.+++.. |+. .|...+. .++..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~-~~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~i~~ 78 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVG-EVLREILLT-EELDERTELLLFEASRSKLIEEKIIP 78 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHH-HHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchH-HHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999 9999998853221111 122233321 210 1111111 12223
Q ss_pred HHcCCCeEEEe----------CCceeechHHHH----hh----cCCcEEEEECCHHHHHhh
Q 028019 160 LSSMGRLVVCA----------GNGAVQSSANLA----LL----RHGISLWIDVPPGMVARM 202 (215)
Q Consensus 160 L~~~~~~VLa~----------G~g~Vl~~~~r~----~L----~~g~vV~Ld~p~e~l~eR 202 (215)
....+..|+.. |.+...+..... ++ ..+++|||++|++++.+|
T Consensus 79 ~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~R 139 (195)
T 2pbr_A 79 DLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRR 139 (195)
T ss_dssp HHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHH
T ss_pred HHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHH
Confidence 33345566654 333333322211 12 256899999999999999
No 45
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.29 E-value=9e-12 Score=102.79 Aligned_cols=114 Identities=16% Similarity=0.234 Sum_probs=72.4
Q ss_pred HHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhC------CceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHH
Q 028019 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVL 157 (215)
Q Consensus 84 ~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg------~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL 157 (215)
.++....-++..|+|+|++||||||+++.|++.++ +.+++.|.+++...+ . . .++...++..++.... ++
T Consensus 16 ~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~-~-~-~~~~~~r~~~~~~~~~-~~ 91 (211)
T 1m7g_A 16 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK-D-L-GFSEADRNENIRRIAE-VA 91 (211)
T ss_dssp HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT-T-C-CSSHHHHHHHHHHHHH-HH
T ss_pred HhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhcc-c-c-CCCHHHHHHHHHHHHH-HH
Confidence 34444445788999999999999999999999887 778888877653322 1 0 1122334455555443 23
Q ss_pred HHHHcCCCeEEEeCCceeechHHHHhhc--------------CCcEEEEECCHHHHHhhh
Q 028019 158 KQLSSMGRLVVCAGNGAVQSSANLALLR--------------HGISLWIDVPPGMVARMD 203 (215)
Q Consensus 158 ~~L~~~~~~VLa~G~g~Vl~~~~r~~L~--------------~g~vV~Ld~p~e~l~eR~ 203 (215)
..++..+..||+.. .. ....+++.++ .+++|||++|++++.+|.
T Consensus 92 ~~~l~~g~~VI~d~-~~-~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 92 KLFADSNSIAITSF-IS-PYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHHHTTCEEEEEC-CC-CCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHHHCCCEEEEec-CC-ccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 44444556667552 22 2223333322 147899999999999983
No 46
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.29 E-value=1.6e-11 Score=104.27 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=42.6
Q ss_pred HHHHHhHhhcc-CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 81 KKKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 81 ~~~~~~~~~~l-~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
...++...... +++.|+|+|+|||||||+|+.|++++|++++++|+++++..
T Consensus 16 ~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~ 68 (243)
T 3tlx_A 16 NELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAA 68 (243)
T ss_dssp HHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT
T ss_pred HHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHH
Confidence 33444444433 77899999999999999999999999999999999888753
No 47
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.28 E-value=1.1e-11 Score=103.96 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=64.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhC-CCchHHH---HhhhhhHHHHHHHHHHHH-HHHcCCCeEE
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GESAAKA---FRESDEKGYQQAETEVLK-QLSSMGRLVV 168 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G-~~si~e~---~~~~ge~~fr~~e~~vL~-~L~~~~~~VL 168 (215)
+.|+|+|+|||||+|+|+.||+++|++++++.+++.+... +...... +-..|...-.++-..++. .+.+..++|+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~il 80 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVIF 80 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceEe
Confidence 4689999999999999999999999999999988876431 0111111 111222111122222222 2333334444
Q ss_pred EeCCceeechHHHHh----hc-----CCcEEEEECCHHHHHhh-hcC
Q 028019 169 CAGNGAVQSSANLAL----LR-----HGISLWIDVPPGMVARM-DHS 205 (215)
Q Consensus 169 a~G~g~Vl~~~~r~~----L~-----~g~vV~Ld~p~e~l~eR-~~r 205 (215)
. |+.-+....+. +. .+.||+|++|.+++.+| ..|
T Consensus 81 D---GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R 124 (206)
T 3sr0_A 81 D---GFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGR 124 (206)
T ss_dssp E---SCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred c---CCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCC
Confidence 2 33222222222 21 35799999999999999 444
No 48
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.27 E-value=2.3e-11 Score=99.50 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=65.9
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~ 165 (215)
-++..|+|+|++||||||+++.|+..+ |.. ++|.|++......... +..+.....++. ...+...+.....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~ 98 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLS---FKAEDRAENIRR-VGEVAKLFADAGI 98 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCC---SSHHHHHHHHHH-HHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccC---cChHHHHHHHHH-HHHHHHHHHhCCc
Confidence 368899999999999999999999999 666 9999987653321010 001111122222 2233344444445
Q ss_pred eEEEeCCceeechHHHHhhc----C--CcEEEEECCHHHHHhhh
Q 028019 166 LVVCAGNGAVQSSANLALLR----H--GISLWIDVPPGMVARMD 203 (215)
Q Consensus 166 ~VLa~G~g~Vl~~~~r~~L~----~--g~vV~Ld~p~e~l~eR~ 203 (215)
.++....+ ..+..++.++ . .++|||++|++++.+|.
T Consensus 99 ~vi~~~~~--~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 99 ICIASLIS--PYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp EEEEECCC--CCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred eEEEecCC--chHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence 55543322 2244555443 2 25699999999999994
No 49
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.26 E-value=5.1e-11 Score=94.90 Aligned_cols=113 Identities=7% Similarity=0.078 Sum_probs=65.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhHHHHhCCCch---HHHHhhhh----hHHHHHHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESA---AKAFRESD----EKGYQQAETEVLKQLS 161 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li~~~~G~~si---~e~~~~~g----e~~fr~~e~~vL~~L~ 161 (215)
+.|+|+|+|||||||+++.|+++++ +.+++.|+++.+..+.... .+-+.... ...+...... +....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~l 80 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKG-IAEEA 80 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHH-HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHH-HHHHh
Confidence 5799999999999999999999998 8889988887654310111 01011000 0011111111 22332
Q ss_pred --cCCCeEEEeCCceeech---------HHHHhhcCCcEEEEECCHHHHHhh--hc--CCC
Q 028019 162 --SMGRLVVCAGNGAVQSS---------ANLALLRHGISLWIDVPPGMVARM--DH--SGF 207 (215)
Q Consensus 162 --~~~~~VLa~G~g~Vl~~---------~~r~~L~~g~vV~Ld~p~e~l~eR--~~--rg~ 207 (215)
..+..||..+.+.+... .....+..+.+|||++|++++.+| .. |+.
T Consensus 81 ~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~~R~~ 141 (194)
T 1nks_A 81 RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNR 141 (194)
T ss_dssp HHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCC
T ss_pred hccCCCEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhcccCC
Confidence 34455665554332221 122223367899999999998866 35 765
No 50
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.26 E-value=3.6e-12 Score=103.80 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=34.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
+.|.|+|++||||||+++.|++ +|+++++.|+++.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~ 39 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFY 39 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHh
Confidence 5799999999999999999999 9999999999887654
No 51
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.25 E-value=4.4e-13 Score=110.43 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=35.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~ 130 (215)
++..|+|+|++||||||+++.|++.+|++++|.|.++++
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~ 40 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA 40 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence 467899999999999999999999999999999999765
No 52
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.25 E-value=2e-11 Score=105.19 Aligned_cols=111 Identities=11% Similarity=0.112 Sum_probs=66.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh-CCceeecchhHHHHhCCCchH--HHHhhhhhHHHHHHHHHHHHHHH---cCCCe
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESAA--KAFRESDEKGYQQAETEVLKQLS---SMGRL 166 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L-g~~~ld~D~li~~~~G~~si~--e~~~~~ge~~fr~~e~~vL~~L~---~~~~~ 166 (215)
++.|+|+|+|||||||+|+.|++++ |+.+++.|.+++...+ .... ..+...++..+.+.....+.... ..+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 80 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG 80 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhcc-CCcccccccchhhhhHHHHHHHHHHHHHHhhccCCCE
Confidence 4679999999999999999999985 9999999987776543 2110 01112223333332223344444 33333
Q ss_pred EEEeCCceeechHHHHhh----c-CC---cEEEEECCHHHHHhh-hcCC
Q 028019 167 VVCAGNGAVQSSANLALL----R-HG---ISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 167 VLa~G~g~Vl~~~~r~~L----~-~g---~vV~Ld~p~e~l~eR-~~rg 206 (215)
||..+ .......++.+ + .+ .+|||++|.+++.+| ..|+
T Consensus 81 vi~d~--~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 81 VIISD--TNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp EEECS--CCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred EEEeC--CCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence 44322 22233333322 1 22 689999999999999 5554
No 53
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.24 E-value=3.7e-11 Score=102.28 Aligned_cols=106 Identities=18% Similarity=0.214 Sum_probs=69.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC--CceeecchhHHH---------HhCCCchHHHHhhhhhHHHHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVFE---------AAGGESAAKAFRESDEKGYQQAETEVLKQL 160 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg--~~~ld~D~li~~---------~~G~~si~e~~~~~ge~~fr~~e~~vL~~L 160 (215)
++..|+|+|+|||||||+|+.|++.++ +.+++.|.+... ..| ..+.++++. .+......++..+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g-~~~~~~~~~----~~~~~~~~~~~~~ 105 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYG-KDSVEYTKD----FAGKMVESLVTKL 105 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCS-STTHHHHHH----HHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcC-chHHHHhhH----HHHHHHHHHHHHH
Confidence 578899999999999999999999997 678899987432 223 333333321 1233334555666
Q ss_pred HcC-CCeEEEeCCcee-echHHHHhhc-CCc---EEEEECCHHHHHhh
Q 028019 161 SSM-GRLVVCAGNGAV-QSSANLALLR-HGI---SLWIDVPPGMVARM 202 (215)
Q Consensus 161 ~~~-~~~VLa~G~g~V-l~~~~r~~L~-~g~---vV~Ld~p~e~l~eR 202 (215)
... ..+||+.+.+.. .....++.++ .+. +||+++|++++.+|
T Consensus 106 ~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R 153 (253)
T 2p5t_B 106 SSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLS 153 (253)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred HhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHH
Confidence 554 467776544322 2233444454 443 46789999999988
No 54
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.22 E-value=2.2e-11 Score=104.27 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=69.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh-CCC----chHHHHhhhhhHHHHHHHHHHHHH-HHc---C
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGE----SAAKAFRESDEKGYQQAETEVLKQ-LSS---M 163 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~-G~~----si~e~~~~~ge~~fr~~e~~vL~~-L~~---~ 163 (215)
.+++-|+|+|||||||+|+.|++.+|++++++++++++.. .+. .+.+++. .|.....+....++.. +.. .
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~-~G~lvpdei~~~ll~~~l~~~~~~ 86 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD-EGKLVPDSLIIGLVKERLKEADCA 86 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHh-hccccccHHHHHHHHHHHhCcccC
Confidence 4678999999999999999999999999999998887742 112 2233332 2332233333333333 332 2
Q ss_pred CCeEEEeCCceeechHHHHhhc-----CCcEEEEECCHHHHHhh-hcCC
Q 028019 164 GRLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSG 206 (215)
Q Consensus 164 ~~~VLa~G~g~Vl~~~~r~~L~-----~g~vV~Ld~p~e~l~eR-~~rg 206 (215)
..+||. |..-+....+.|. .+.||||++|.+++.+| .+|+
T Consensus 87 ~g~ILD---GfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 87 NGYLFD---GFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp TCEEEE---SCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred CCeEec---CCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 345553 2222222223332 46899999999999999 5554
No 55
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.20 E-value=3.8e-11 Score=96.70 Aligned_cols=105 Identities=20% Similarity=0.271 Sum_probs=62.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhHHHHhCCCchHHHHhh-hhhHHHHHHHHHHHHHHHcCCC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRE-SDEKGYQQAETEVLKQLSSMGR 165 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li~~~~G~~si~e~~~~-~ge~~fr~~e~~vL~~L~~~~~ 165 (215)
++..|+|+|++||||||+++.|++.++ +.+++.|.+.+...+... +.. ..+..++.. ..+...+...+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~r~~~~~~~-~~~~~~~~~~g~ 86 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAG----FTREERLRHLKRI-AWIARLLARNGV 86 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCC----CCHHHHHHHHHHH-HHHHHHHHTTTC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccC----CChhhHHHHHHHH-HHHHHHHHhCCC
Confidence 678899999999999999999999986 357888887554332111 111 111112211 112223334444
Q ss_pred eEEEeCCceee---chHHHHhhc----CCcEEEEECCHHHHHhh
Q 028019 166 LVVCAGNGAVQ---SSANLALLR----HGISLWIDVPPGMVARM 202 (215)
Q Consensus 166 ~VLa~G~g~Vl---~~~~r~~L~----~g~vV~Ld~p~e~l~eR 202 (215)
.|+..+ .... ....++.+. .+++|||++|++++.+|
T Consensus 87 ~vi~d~-~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R 129 (186)
T 2yvu_A 87 IVICSF-VSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRR 129 (186)
T ss_dssp EEEEEC-CCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHH
T ss_pred EEEEeC-ccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHh
Confidence 555433 2211 122233333 35889999999999998
No 56
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.19 E-value=1.4e-11 Score=104.52 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=34.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc----------eeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----------YFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~----------~ld~D~li~ 129 (215)
++..|.|+|++||||||+|+.|++.+|++ ++++|++++
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 56789999999999999999999999998 799999875
No 57
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.18 E-value=7.7e-11 Score=97.15 Aligned_cols=40 Identities=23% Similarity=0.177 Sum_probs=35.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
++..|.|+|++||||||+++.|++ +|++++|+|.+..+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~ 42 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVV 42 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHh
Confidence 356899999999999999999998 9999999999887643
No 58
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.18 E-value=4.8e-11 Score=97.41 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=33.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~ 131 (215)
..|.|+|++||||||+++.|++ +|++++|+|++..+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~ 39 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREV 39 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHH
Confidence 4789999999999999999998 999999999987664
No 59
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.18 E-value=1.8e-11 Score=98.81 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=36.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~ 132 (215)
++..|.|+|++||||||+|+.||+. |++++|.|+++++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~ 46 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR 46 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc
Confidence 4678999999999999999999998 999999999877654
No 60
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.17 E-value=1.4e-11 Score=101.56 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=35.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~ 130 (215)
+..|.|+|++||||||+++.|++.+|++++|+|+++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~ 42 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV 42 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeeh
Confidence 46899999999999999999999999999999998875
No 61
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.17 E-value=1.1e-10 Score=93.43 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=61.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCceeecchhHHHHhCCCchHHHH-hhhhhHHHHHHHHHHHHHHHcCCCeE
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAF-RESDEKGYQQAETEVLKQLSSMGRLV 167 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~~ld~D~li~~~~G~~si~e~~-~~~ge~~fr~~e~~vL~~L~~~~~~V 167 (215)
++..|+|+|++||||||+++.|++.+ |++++++|...... + ......+ ...++..+++.+.. ...+.... .+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~ 79 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ-G-LNKNLGFSPEDREENVRRIAEV-AKLFADAG-LV 79 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-T-TTTTCCSSHHHHHHHHHHHHHH-HHHHHHTT-CE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHH-H-HhhccccccccHHHHHHHHHHH-HHHHHHCC-CE
Confidence 57789999999999999999999998 98888655332211 0 1000011 12344455554432 12222333 33
Q ss_pred EEeCCce-ee---chHHHHhhc-CC---cEEEEECCHHHHHhh
Q 028019 168 VCAGNGA-VQ---SSANLALLR-HG---ISLWIDVPPGMVARM 202 (215)
Q Consensus 168 La~G~g~-Vl---~~~~r~~L~-~g---~vV~Ld~p~e~l~eR 202 (215)
+.++ +. .. ...+++.++ .+ ++|||++|++++.+|
T Consensus 80 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R 121 (179)
T 2pez_A 80 CITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQR 121 (179)
T ss_dssp EEEE-CCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHH
T ss_pred EEEe-cCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHH
Confidence 3332 22 11 122233332 33 789999999999999
No 62
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.17 E-value=1e-10 Score=112.87 Aligned_cols=110 Identities=19% Similarity=0.263 Sum_probs=71.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh---CCceeecchhHHHHhCCCchHHHHh-hhhhHHHHHHHHHHHHHHHcCCCe
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAFR-ESDEKGYQQAETEVLKQLSSMGRL 166 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~~ld~D~li~~~~G~~si~e~~~-~~ge~~fr~~e~~vL~~L~~~~~~ 166 (215)
.++..|+|+|+|||||||+|+.|+++| |++++++|...... + ......|. ..++..|+++. ++...+...+..
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~-~-L~~~~~fs~~dree~~r~i~-eva~~~l~~G~i 126 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ-G-LNKNLGFSPEDREENVRRIA-EVAKLFADAGLV 126 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT-T-TTTTCCSSHHHHHHHHHHHH-HHHHHHHHTTCE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh-c-cCccccCChhhhHHHHHHHH-HHHHHHHhCCCE
Confidence 477899999999999999999999999 99988776433221 2 22222233 44566677653 344445545555
Q ss_pred EEEeCCceee---chHHHHhhc-C---CcEEEEECCHHHHHhhhc
Q 028019 167 VVCAGNGAVQ---SSANLALLR-H---GISLWIDVPPGMVARMDH 204 (215)
Q Consensus 167 VLa~G~g~Vl---~~~~r~~L~-~---g~vV~Ld~p~e~l~eR~~ 204 (215)
|+. +.+... ...++++++ . .++|||++|++++.+|..
T Consensus 127 VI~-d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~ 170 (630)
T 1x6v_B 127 CIT-SFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDV 170 (630)
T ss_dssp EEE-ECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCT
T ss_pred EEE-eCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhc
Confidence 554 323222 233444444 2 358999999999999944
No 63
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.15 E-value=3.2e-11 Score=103.15 Aligned_cols=104 Identities=9% Similarity=0.002 Sum_probs=64.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH---hCC-Cch-H-------------HHHh-hhhhHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA---AGG-ESA-A-------------KAFR-ESDEKGYQQAET 154 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~---~G~-~si-~-------------e~~~-~~ge~~fr~~e~ 154 (215)
+.|+|+|+|||||||+|+.||+++++.+++.|.++... .+. ... . +..+ ..+...|++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 47899999999999999999999999999999975321 000 000 0 0011 234455666665
Q ss_pred HHHHHHHcCCCe-EEEeCCceeechHHHHhhc-----CC---cEEEEECCH-HHHHhh
Q 028019 155 EVLKQLSSMGRL-VVCAGNGAVQSSANLALLR-----HG---ISLWIDVPP-GMVARM 202 (215)
Q Consensus 155 ~vL~~L~~~~~~-VLa~G~g~Vl~~~~r~~L~-----~g---~vV~Ld~p~-e~l~eR 202 (215)
..+ .+...+.. |+..|.+. ...+++. .+ .+|||++|. +++.+|
T Consensus 82 ~~i-~~~~~g~~vIl~gg~~~----~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~R 134 (253)
T 2ze6_A 82 FEV-DWRKSEEGLILEGGSIS----LLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTR 134 (253)
T ss_dssp HHH-HTTTTSSEEEEEECCHH----HHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHH
T ss_pred HHH-HHHhCCCCeEEeccHHH----HHHHHHhcccccccCceEEEEecchhHHHHHHH
Confidence 555 55444444 44433322 1122222 22 689999997 999988
No 64
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.14 E-value=5.6e-11 Score=101.35 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=36.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~ 130 (215)
++..|.|+|++||||||+++.||++||+.++|.|.++..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 567899999999999999999999999999999998843
No 65
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.14 E-value=2.2e-12 Score=108.42 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=37.3
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~ 130 (215)
.++..|.|+|++||||||+++.|++.+|++++|.|+++..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~ 53 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA 53 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEc
Confidence 4678899999999999999999999999999999999875
No 66
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.14 E-value=6.7e-11 Score=111.54 Aligned_cols=111 Identities=21% Similarity=0.209 Sum_probs=68.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCce-----eecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHH------
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYY-----FDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQL------ 160 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~-----ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L------ 160 (215)
.+..|+|+|+|||||||+|+.||+.|++.+ ++.|+++++..|.....++|+..++..++..+..+...+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~ 113 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSY 113 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999997655 567999888877334556777667766665444432222
Q ss_pred H--cCCCeEE--EeCCceeechHHHHhhc-CC---cEEEEECC-HHHHHhh
Q 028019 161 S--SMGRLVV--CAGNGAVQSSANLALLR-HG---ISLWIDVP-PGMVARM 202 (215)
Q Consensus 161 ~--~~~~~VL--a~G~g~Vl~~~~r~~L~-~g---~vV~Ld~p-~e~l~eR 202 (215)
+ ..+..|| +++.+.......++.++ .+ ++|++.++ .+.+.+|
T Consensus 114 L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~r 164 (520)
T 2axn_A 114 LAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASN 164 (520)
T ss_dssp HHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHH
T ss_pred HHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHH
Confidence 1 2344444 33333222233334443 34 24555566 5566666
No 67
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.12 E-value=1e-10 Score=111.31 Aligned_cols=110 Identities=19% Similarity=0.311 Sum_probs=64.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC------CceeecchhHHHHhCCCchHHHHhh-hhhHHHHHHHHHHHHHHHcCC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRE-SDEKGYQQAETEVLKQLSSMG 164 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg------~~~ld~D~li~~~~G~~si~e~~~~-~ge~~fr~~e~~vL~~L~~~~ 164 (215)
++..|+|+|++||||||+++.||..++ +.++|.|++.....+ .+. |.. +++..++.+ ..+.+.+....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~--~l~--f~~~~r~~~~r~i-~~v~q~l~~~~ 442 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSS--ELG--FSKAHRDVNVRRI-GFVASEITKNR 442 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTS--SCC--CSHHHHHHHHHHH-HHHHHHHHHTT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhcc--ccC--CCHHHHHHHHHHH-HHHHHHHHhcC
Confidence 678999999999999999999999984 557999988764322 111 211 222333433 44556665566
Q ss_pred CeEEEeCCc--eeechHHHHhhc-CC--cEEEEECCHHHHHhhhcCC
Q 028019 165 RLVVCAGNG--AVQSSANLALLR-HG--ISLWIDVPPGMVARMDHSG 206 (215)
Q Consensus 165 ~~VLa~G~g--~Vl~~~~r~~L~-~g--~vV~Ld~p~e~l~eR~~rg 206 (215)
..+++++.+ ...+..+++.++ .+ ++|||++|.+++.+|..|+
T Consensus 443 ~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~ 489 (552)
T 3cr8_A 443 GIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKG 489 (552)
T ss_dssp CEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC------------
T ss_pred CEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcccc
Confidence 677766543 223345566665 46 8899999999999996544
No 68
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.10 E-value=3.6e-10 Score=90.92 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=27.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceee
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld 123 (215)
+.|+|+|++||||||+++.|++.+++.+++
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 368999999999999999999999998775
No 69
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.09 E-value=4.6e-10 Score=107.10 Aligned_cols=118 Identities=18% Similarity=0.227 Sum_probs=72.8
Q ss_pred HHHHhHhhcc-----CCcEEEEEccCCCcHHHHHHHHHHHhC----C--ceeecchhHHHHhCCCchHHHHhh-hhhHHH
Q 028019 82 KKAADISTEL-----KGTSVFLVGMNNAIKTHLGKFLADALR----Y--YYFDSDSLVFEAAGGESAAKAFRE-SDEKGY 149 (215)
Q Consensus 82 ~~~~~~~~~l-----~~~~I~LiG~pGSGKSTlAk~LA~~Lg----~--~~ld~D~li~~~~G~~si~e~~~~-~ge~~f 149 (215)
...+.++..+ ++..|+|+|+|||||||+|+.|+++|+ + .++|.|.+.....+... |.. +....+
T Consensus 380 eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~----f~~~er~~~i 455 (573)
T 1m8p_A 380 EVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELG----FTREDRHTNI 455 (573)
T ss_dssp HHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCC----CSHHHHHHHH
T ss_pred cccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccC----CChhHHHHHH
Confidence 3455556555 457899999999999999999999987 3 56777876654433111 111 111222
Q ss_pred HHHHHHHHHHHHcCCCeEEEeCCceeech----HHHHhhcC-C--cEEEEECCHHHHHhhhcCC
Q 028019 150 QQAETEVLKQLSSMGRLVVCAGNGAVQSS----ANLALLRH-G--ISLWIDVPPGMVARMDHSG 206 (215)
Q Consensus 150 r~~e~~vL~~L~~~~~~VLa~G~g~Vl~~----~~r~~L~~-g--~vV~Ld~p~e~l~eR~~rg 206 (215)
++. .+++..+...+..||+.... ... .+++.++. + ++|||++|++++.+|+.++
T Consensus 456 ~ri-~~v~~~~~~~g~~VI~~~is--~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~ 516 (573)
T 1m8p_A 456 QRI-AFVATELTRAGAAVIAAPIA--PYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRG 516 (573)
T ss_dssp HHH-HHHHHHHHHTTCEEEEECCC--CCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSC
T ss_pred HHH-HHHHHHHHhCCCEEEEEcCC--CcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhccc
Confidence 222 23555565556667764211 112 23334443 5 8899999999999995443
No 70
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.08 E-value=1.6e-09 Score=87.54 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=28.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc--eee
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY--YFD 123 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~--~ld 123 (215)
+++.|+|+|+|||||||+++.|+++++.. ++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 56789999999999999999999999874 444
No 71
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.07 E-value=4.5e-10 Score=90.86 Aligned_cols=38 Identities=26% Similarity=0.209 Sum_probs=35.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~ 131 (215)
+.|.|+|++||||||+|+.||+.+|++++|.|.++...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~ 40 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAA 40 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhh
Confidence 37999999999999999999999999999999988764
No 72
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.07 E-value=1e-10 Score=95.11 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=30.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l 127 (215)
+++.|+|+|++||||||+++.|+++++..+++.|.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 578899999999999999999999987666665433
No 73
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.07 E-value=7.6e-11 Score=95.36 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=32.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh-CCceeecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L-g~~~ld~D~l 127 (215)
+++.|+|+|++||||||+++.|++.+ |+++++.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~ 39 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP 39 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 57889999999999999999999999 6888887653
No 74
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.07 E-value=1.2e-09 Score=94.70 Aligned_cols=39 Identities=28% Similarity=0.269 Sum_probs=34.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~ 131 (215)
.+..|.|+|++||||||+|+.|+ .+|++++|+|.+.++.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~ 112 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRA 112 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHH
Confidence 35679999999999999999999 6899999999986654
No 75
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.06 E-value=7.3e-10 Score=96.66 Aligned_cols=111 Identities=15% Similarity=0.142 Sum_probs=65.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh--CCceeecchhHHHHhCCCchHHHHh----hhhhHHHHHHHHHHHHHHHc-CC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAGGESAAKAFR----ESDEKGYQQAETEVLKQLSS-MG 164 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L--g~~~ld~D~li~~~~G~~si~e~~~----~~ge~~fr~~e~~vL~~L~~-~~ 164 (215)
++..|+|+|+|||||||+++.|++.+ ++.+++.|.++....+...+.+-+. .....++......++..+.. ..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~g~ 111 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGY 111 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 56789999999999999999999999 7899999987643222000000010 11122344444444555443 44
Q ss_pred CeEEEeCCceee-chHHHHhhc-CC---cEEEEECCHHHH----Hhh
Q 028019 165 RLVVCAGNGAVQ-SSANLALLR-HG---ISLWIDVPPGMV----ARM 202 (215)
Q Consensus 165 ~~VLa~G~g~Vl-~~~~r~~L~-~g---~vV~Ld~p~e~l----~eR 202 (215)
.+|+........ ....++.++ .+ .++|+.+|++++ .+|
T Consensus 112 ~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~R 158 (287)
T 1gvn_B 112 NLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIER 158 (287)
T ss_dssp CEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHH
Confidence 566643322211 112333443 33 368999999999 777
No 76
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.05 E-value=4.8e-10 Score=89.95 Aligned_cols=32 Identities=16% Similarity=0.087 Sum_probs=28.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh---CCceeecch
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDS 126 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L---g~~~ld~D~ 126 (215)
.|+|+|++||||||+++.|++.+ |++++.+++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 58999999999999999999999 999987754
No 77
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.05 E-value=2.9e-10 Score=104.00 Aligned_cols=92 Identities=15% Similarity=0.079 Sum_probs=62.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCCCeEEEeC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~~~VLa~G 171 (215)
.+..|+|+|+|||||||+|+.|++.+++.+++.|.+. .|+.....+...+.....+||.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-------------------~~~~~~~~~~~~l~~g~~vIiD~~ 317 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG-------------------SWQRCVSSCQAALRQGKRVVIDNT 317 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC-------------------SHHHHHHHHHHHHHTTCCEEEESC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH-------------------HHHHHHHHHHHHHhcCCcEEEeCC
Confidence 5788999999999999999999999999999999861 022233334444544455666543
Q ss_pred Cceee-chHHHHhhc-C---CcEEEEECCHHHHHhh
Q 028019 172 NGAVQ-SSANLALLR-H---GISLWIDVPPGMVARM 202 (215)
Q Consensus 172 ~g~Vl-~~~~r~~L~-~---g~vV~Ld~p~e~l~eR 202 (215)
+.... ....++.++ . -.+|||++|.+++.+|
T Consensus 318 ~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R 353 (416)
T 3zvl_A 318 NPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHN 353 (416)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHH
Confidence 22111 111222232 2 2789999999999999
No 78
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.03 E-value=1.1e-09 Score=92.13 Aligned_cols=107 Identities=10% Similarity=0.094 Sum_probs=62.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh-CCCch----HHHHhhhhhHHHHHHHHH-HHHHHHc--C
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESA----AKAFRESDEKGYQQAETE-VLKQLSS--M 163 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~-G~~si----~e~~~~~ge~~fr~~e~~-vL~~L~~--~ 163 (215)
++..|+|+|++||||||+++.|++++|+..++.|+++.... .+..+ ..+++. +.........+ +...+.. .
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEK-SLLVPDHVITRLMMSELENRRG 104 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhcCC
Confidence 46899999999999999999999999999999988876531 10111 111211 11111111122 2222332 2
Q ss_pred CCeEEEeCCceeechHHHHhh----cCCcEEEEECCHHHHHhh
Q 028019 164 GRLVVCAGNGAVQSSANLALL----RHGISLWIDVPPGMVARM 202 (215)
Q Consensus 164 ~~~VLa~G~g~Vl~~~~r~~L----~~g~vV~Ld~p~e~l~eR 202 (215)
..+++. |.. ......+.+ ..+++|||++|++++.+|
T Consensus 105 ~~~il~-g~~--~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r 144 (246)
T 2bbw_A 105 QHWLLD-GFP--RTLGQAEALDKICEVDLVISLNIPFETLKDR 144 (246)
T ss_dssp SCEEEE-SCC--CSHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred CeEEEE-CCC--CCHHHHHHHHhhcCCCEEEEEECCHHHHHHH
Confidence 234443 211 111111221 257999999999999988
No 79
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.00 E-value=1.4e-09 Score=91.87 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=42.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHh--CCCchHHHHhhhhh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAAKAFRESDE 146 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~--G~~si~e~~~~~ge 146 (215)
.-.|.|+|.+||||||+++.|++ +|++++|+|.+..+.+ |+..+.++++..|+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~ 63 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGP 63 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCG
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhCh
Confidence 35689999999999999999998 9999999999888765 33445556555554
No 80
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.00 E-value=1.1e-09 Score=88.10 Aligned_cols=110 Identities=12% Similarity=-0.010 Sum_probs=61.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCC-ceeecchhHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHHHHcCC-CeEEEe
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRY-YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG-RLVVCA 170 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~-~~ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~L~~~~-~~VLa~ 170 (215)
+..|+|+|++||||||+++.|++.++. .+++.|++.+....+.-............+...+.. ........ ..|+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~ild~ 80 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-TVNFLLAQNDVVLDY 80 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-HHHHHHTTCEEEEES
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-HHHHHhcCCcEEEee
Confidence 357899999999999999999998875 789999876532211111111011111222323222 22222222 344442
Q ss_pred CCceeechHH----HHhhc------CCcEEEEECCHHHHHhh-hcCCC
Q 028019 171 GNGAVQSSAN----LALLR------HGISLWIDVPPGMVARM-DHSGF 207 (215)
Q Consensus 171 G~g~Vl~~~~----r~~L~------~g~vV~Ld~p~e~l~eR-~~rg~ 207 (215)
+ ..+.. +++++ ...++||++|++++.+| ..|..
T Consensus 81 ---~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~ 124 (189)
T 2bdt_A 81 ---I-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK 124 (189)
T ss_dssp ---C-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC
T ss_pred ---c-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccc
Confidence 1 22222 22321 22468999999999999 44543
No 81
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.96 E-value=3e-09 Score=90.96 Aligned_cols=40 Identities=25% Similarity=0.206 Sum_probs=36.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~ 131 (215)
++..|+|+|++||||||+++.||+.+|+.++|.|.++...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~ 47 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA 47 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence 4678999999999999999999999999999999987663
No 82
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.95 E-value=2.9e-10 Score=92.41 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=31.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecch
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~ 126 (215)
.+++.|+|+|++||||||+++.|++.++..+++.|.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 357899999999999999999999999988777754
No 83
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.95 E-value=2e-10 Score=106.26 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=49.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecch-----hHHHHhCCCchHHHHhhhhhHHHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS-----LVFEAAGGESAAKAFRESDEKGYQQAETEVLKQ 159 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~-----li~~~~G~~si~e~~~~~ge~~fr~~e~~vL~~ 159 (215)
++..|+|+|+|||||||+++.|++.+++.++++|. ++.+..|.....++|+..|+..++..+..++..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~ 110 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAA 110 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999877666554 666666522334677777776666655554333
No 84
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.92 E-value=3.4e-09 Score=100.58 Aligned_cols=119 Identities=19% Similarity=0.295 Sum_probs=71.3
Q ss_pred HHHHHhHhhcc-----CCcEEEEEccCCCcHHHHHHHHHHHhCC-----ceeecchhHHHHhCCCchHHHHhhh-hhHHH
Q 028019 81 KKKAADISTEL-----KGTSVFLVGMNNAIKTHLGKFLADALRY-----YYFDSDSLVFEAAGGESAAKAFRES-DEKGY 149 (215)
Q Consensus 81 ~~~~~~~~~~l-----~~~~I~LiG~pGSGKSTlAk~LA~~Lg~-----~~ld~D~li~~~~G~~si~e~~~~~-ge~~f 149 (215)
+..++.++... .+..|+|+|++||||||+|+.|++.++. .++|.|.+.....+... |... ....+
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~----f~~~er~~~l 430 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLG----FSKEDRITNI 430 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCC----SSHHHHHHHH
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhccccc----ccHHHHHHHH
Confidence 44555666655 3578999999999999999999999874 78999987665443111 1111 11111
Q ss_pred HHHHHHHHHHHHcCCCeEEEeCCceeechHH----HHhhc-CC-cEEEEECCHHHHHhhhcCC
Q 028019 150 QQAETEVLKQLSSMGRLVVCAGNGAVQSSAN----LALLR-HG-ISLWIDVPPGMVARMDHSG 206 (215)
Q Consensus 150 r~~e~~vL~~L~~~~~~VLa~G~g~Vl~~~~----r~~L~-~g-~vV~Ld~p~e~l~eR~~rg 206 (215)
+.+. .+...+...+..||..+ ....+.. ++.++ .+ ++|||++|.+++.+|..|+
T Consensus 431 ~~i~-~~~~~~l~~G~~VI~d~--~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~ 490 (546)
T 2gks_A 431 LRVG-FVASEIVKHNGVVICAL--VSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKG 490 (546)
T ss_dssp HHHH-HHHHHHHHTTCEEEEEC--CCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSS
T ss_pred HHHH-HHHHHHHhCCCEEEEEc--CCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhcc
Confidence 2211 22333444444444332 1122232 23333 35 7899999999999995443
No 85
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.91 E-value=3e-09 Score=86.89 Aligned_cols=44 Identities=23% Similarity=0.190 Sum_probs=37.0
Q ss_pred hHhhcc-CCcEEEEEccCCCcHHHHHHHHHHHh-CCceeecchhHH
Q 028019 86 DISTEL-KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVF 129 (215)
Q Consensus 86 ~~~~~l-~~~~I~LiG~pGSGKSTlAk~LA~~L-g~~~ld~D~li~ 129 (215)
++.+.+ ++..|.|+|++||||||+++.|++.+ ++.+++.|.++.
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~ 58 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK 58 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc
Confidence 444555 45678899999999999999999998 899999999865
No 86
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.90 E-value=1.1e-09 Score=98.14 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=60.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHHHhCCCc--------------------hHHHHhhhhhHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES--------------------AAKAFRESDEKGYQQA 152 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~~~G~~s--------------------i~e~~~~~ge~~fr~~ 152 (215)
++.|+|+|++||||||+|+.||++++..+++.|.+.... | ++ +.+.++.+++..|++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~-~-~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~ 82 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYR-G-MDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRAD 82 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBT-T-CCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhc-C-CCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHH
Confidence 357999999999999999999999999999999874321 2 22 1122344566778888
Q ss_pred HHHHHHHHHcCCCeEEEeCCce
Q 028019 153 ETEVLKQLSSMGRLVVCAGNGA 174 (215)
Q Consensus 153 e~~vL~~L~~~~~~VLa~G~g~ 174 (215)
+..++..+...+..+|.+||+.
T Consensus 83 a~~~i~~i~~~g~~~IlvGGt~ 104 (323)
T 3crm_A 83 ALAAMAKATARGRIPLLVGGTM 104 (323)
T ss_dssp HHHHHHHHHHTTCEEEEEESCH
T ss_pred HHHHHHHHHHcCCeEEEECCch
Confidence 8888888887777777777653
No 87
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.89 E-value=1e-09 Score=89.92 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=25.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
-+++.|+|+|+|||||||+++.|++.++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4788999999999999999999999984
No 88
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.83 E-value=2.2e-08 Score=84.41 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=28.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC--Cceeec
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDS 124 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg--~~~ld~ 124 (215)
++..|+|.|++||||||+++.|++.++ +.++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 678899999999999999999999996 455543
No 89
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.74 E-value=9e-09 Score=92.71 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=62.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchh--HHHH------------hCCCc-----hHHHHhhhhhHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEA------------AGGES-----AAKAFRESDEKGYQQAET 154 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l--i~~~------------~G~~s-----i~e~~~~~ge~~fr~~e~ 154 (215)
+.|+|+|++||||||+|+.||+.++..+++.|.+ +..+ .| .. +.+..+......|.....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~-v~hhl~di~~~~~~~~~~dF~~~a~ 86 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEG-IPHYMIDILPPDASFSAYEFKKRAE 86 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTT-CCEESSSCBCTTSCCCHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHH-HHHHHHHHhCCccccCHHHHHHHHH
Confidence 5799999999999999999999999999999987 3221 11 00 111111233455766666
Q ss_pred HHHHHHHcCCCeEEEeCCceeechHHHHhhcCCcEEEEE-CCHH
Q 028019 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWID-VPPG 197 (215)
Q Consensus 155 ~vL~~L~~~~~~VLa~G~g~Vl~~~~r~~L~~g~vV~Ld-~p~e 197 (215)
..+..+...+..+|.+||..+.... +..++.+|.+ ++.+
T Consensus 87 ~~i~~i~~~g~~~IlvGGt~ly~~~----l~~~l~~~~~~~d~~ 126 (340)
T 3d3q_A 87 KYIKDITRRGKVPIIAGGTGLYIQS----LLYNYAFEDESISED 126 (340)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHHH----HHBCSCCC---CCHH
T ss_pred HHHHHHHhCCCcEEEECChhhhHHH----HHhcccccCCCCChH
Confidence 6667776556666667665543222 2223447788 8887
No 90
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.72 E-value=3.5e-09 Score=97.44 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=61.5
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++|.|++| ++.....+.|.+++|.+.-+++..+ +++.|+|.||||+|||.+|+.+|.+++++|+..+
T Consensus 145 v~~~dIgG--l~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 145 STYDMVGG--LTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp CCGGGSCS--CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHHhCC--HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 89999998 8889999999999999999999874 6789999999999999999999999999987654
No 91
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.70 E-value=8.8e-10 Score=99.98 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=55.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCce--------------------eecchhHHHHhCCCchHHHHhhhhhHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYY--------------------FDSDSLVFEAAGGESAAKAFRESDEKGYQQAE 153 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~--------------------ld~D~li~~~~G~~si~e~~~~~ge~~fr~~e 153 (215)
..|+|+|+|||||||+++.||+.++++| +|+|..+++..| +++.++|+..|+ .||..|
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g-~~i~~if~~~ge-~fr~~E 102 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQP-NKVAEMIENQGL-FKDHVE 102 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCH-HHHHHHHHTTTC-CGGGTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhC-ccHHHHHHHhcc-cchHHH
Confidence 4599999999999999999999999999 999999988877 889999999999 899887
Q ss_pred HHH
Q 028019 154 TEV 156 (215)
Q Consensus 154 ~~v 156 (215)
...
T Consensus 103 ~~~ 105 (359)
T 2ga8_A 103 DVN 105 (359)
T ss_dssp CTT
T ss_pred hhh
Confidence 744
No 92
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.67 E-value=3.2e-08 Score=84.07 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=28.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh-CCceeec
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDS 124 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L-g~~~ld~ 124 (215)
+++.|+|.|++||||||+++.|++.+ ++.++..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~e 56 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPE 56 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEEec
Confidence 56889999999999999999999999 6666643
No 93
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.66 E-value=7.2e-09 Score=96.15 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=60.9
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++|.|+++ ++.....+.+.++++.+..+++..+ +++.|+|.||||||||++|+.+|.++|++|+..+
T Consensus 178 v~~~digG--l~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 178 ITFDGIGG--LTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SCSGGGCS--CHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CChhHhCC--hHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 78999998 8888899999999999999999874 6799999999999999999999999999987553
No 94
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.66 E-value=8.2e-09 Score=95.52 Aligned_cols=67 Identities=18% Similarity=0.134 Sum_probs=60.9
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++|.|++| ++.....+.+.++++.+..+++..+ .++.|+|.||||+|||++|+.+|.++|++++..+
T Consensus 169 v~~~digG--l~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 169 VTYADVGG--LDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp CCGGGSCS--CHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHHhcc--HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 89999998 8888889999999999999998874 7788999999999999999999999999987654
No 95
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.65 E-value=7.6e-09 Score=95.90 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=60.8
Q ss_pred eecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 56 TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 56 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
+++|.|+++ ++.....+.+.++++.+..+++..+ .++.|+|.||||||||.+|+.+|.++|++|+..+
T Consensus 177 ~~t~~digG--l~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 177 TETYSDVGG--LDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp SCCGGGSCS--CHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCChHhcCc--HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 479999998 8888889999999999998988774 6889999999999999999999999999987654
No 96
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.63 E-value=9.4e-09 Score=95.36 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=61.6
Q ss_pred eecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 56 TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 56 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
+++|.|+++ ++.....+.|.++++.+..+++..+ .++-|+|.||||+|||.+|+.+|.+++++|+..+
T Consensus 178 ~v~~~DIgG--ld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 178 TESYSDIGG--LESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp CCCGGGTCS--CHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCcceecCc--HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE
Confidence 389999998 8888999999999999999998874 6799999999999999999999999999987654
No 97
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.62 E-value=1.1e-08 Score=95.76 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=61.0
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++|+|+++ ++.....+.|.++++.+..+++..+ +++.|+|.||||+|||++|+.+|.+++++|+..+
T Consensus 206 vt~~DIgG--l~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 206 VTYSDVGG--CKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp CCCSSCTT--CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHHhcc--HHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence 88999998 8888889999999999999999875 7899999999999999999999999999987654
No 98
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.58 E-value=2.1e-07 Score=74.34 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=33.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc--eeecchhHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY--YFDSDSLVFE 130 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~--~ld~D~li~~ 130 (215)
++..|+|+|+|||||||+++.|+..++.. +++.|++...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~ 48 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY 48 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhh
Confidence 67889999999999999999999987554 7888887543
No 99
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.55 E-value=7.7e-07 Score=74.41 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=26.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh-CCcee
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYF 122 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L-g~~~l 122 (215)
+++.|+|.|++||||||+++.|++.+ ++.++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~~ 32 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVA 32 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCeee
Confidence 46789999999999999999999999 55443
No 100
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.52 E-value=3.8e-07 Score=74.21 Aligned_cols=38 Identities=24% Similarity=0.130 Sum_probs=34.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC--CceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg--~~~ld~D~li~ 129 (215)
++..|.|+|++||||||+++.|+..++ +.+++.|.++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 567899999999999999999999999 99999988664
No 101
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.49 E-value=5.1e-07 Score=75.62 Aligned_cols=29 Identities=34% Similarity=0.407 Sum_probs=25.5
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 90 ELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 90 ~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
.+++..|+|.|++||||||+++.|++.|+
T Consensus 3 ~m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 3 AMTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999985
No 102
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.46 E-value=1.9e-07 Score=76.60 Aligned_cols=37 Identities=27% Similarity=0.156 Sum_probs=31.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLV 128 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li 128 (215)
++..|.|+|++||||||+++.|+..+. ..++..|...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 677899999999999999999999885 5677777653
No 103
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.44 E-value=3.2e-07 Score=77.91 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=23.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
.++..|+|.|++||||||+++.|++.|+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36889999999999999999999999843
No 104
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.37 E-value=1.2e-07 Score=81.91 Aligned_cols=67 Identities=18% Similarity=0.099 Sum_probs=50.4
Q ss_pred eecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 56 TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 56 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
.++|.|+.+ ++.....+.+.++++.+..++...+ .++.++|+|+|||||||+++.||..++..++..
T Consensus 6 ~~~~~di~g--~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i 75 (274)
T 2x8a_A 6 NVTWADIGA--LEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISV 75 (274)
T ss_dssp ------CCH--HHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCCHHHhCC--HHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence 478999987 6667777888888888888888764 455699999999999999999999998766543
No 105
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.36 E-value=9.9e-07 Score=75.27 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=25.9
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
+++..|+|.|++||||||+++.|++.|+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999999853
No 106
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.32 E-value=1.6e-07 Score=92.99 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=58.4
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++|.|+.+ ++.....+.|.+.++.+.-+++..+ +++.|+|.||||+|||++|+.+|.++|.+++..+
T Consensus 201 v~~~dIgG--l~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~ 270 (806)
T 3cf2_A 201 VGYDDIGG--CRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCGGGCCS--CCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred CChhhhcC--HHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 67777777 6777778888888998988888886 6889999999999999999999999999988765
No 107
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.32 E-value=2.5e-06 Score=68.60 Aligned_cols=27 Identities=30% Similarity=0.240 Sum_probs=24.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
++..|.|+|++||||||+++.|+..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 578899999999999999999999865
No 108
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.30 E-value=2.3e-06 Score=71.11 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=25.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh--CCcee
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYF 122 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L--g~~~l 122 (215)
++-|.|-|+.||||||+++.|++.| |+.++
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~ 33 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVI 33 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 3568899999999999999999998 45444
No 109
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.28 E-value=5.1e-07 Score=85.23 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=41.8
Q ss_pred chhhHHHHHHhHhhcc-----CCcEEEEEccCCCcHHHHHHHHHHHhCC-------ceeecch
Q 028019 76 PSFAVKKKAADISTEL-----KGTSVFLVGMNNAIKTHLGKFLADALRY-------YYFDSDS 126 (215)
Q Consensus 76 ~~~~~~~~~~~~~~~l-----~~~~I~LiG~pGSGKSTlAk~LA~~Lg~-------~~ld~D~ 126 (215)
+-+.-+..++.++... ++..|+|+|+|||||||+|+.||++|+. .++|.|+
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4455566666666665 5579999999999999999999999996 6899987
No 110
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.28 E-value=2.9e-07 Score=81.10 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=53.9
Q ss_pred eecccCCCCccccccccCCCchhhHHHHHHhHhhc--cCCcEEEEEccCCCcHHHHHHHHHHHh-CCceee
Q 028019 56 TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTE--LKGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFD 123 (215)
Q Consensus 56 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~I~LiG~pGSGKSTlAk~LA~~L-g~~~ld 123 (215)
.++|+++.+ ++.....+.+.+.++.+..+++.. .+++.|+|+|+||+|||++|+.+|+.+ +..++.
T Consensus 8 ~~~~~di~G--~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 8 NVKWSDVAG--LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp CCCGGGSCS--CHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred CCCHHHhcC--HHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence 478999987 666777778888888887777654 256899999999999999999999999 776653
No 111
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.25 E-value=1.9e-06 Score=77.01 Aligned_cols=82 Identities=23% Similarity=0.235 Sum_probs=52.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh--HHHH-hC--CCchHH-------------HHhhhhhHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEA-AG--GESAAK-------------AFRESDEKGYQQAE 153 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l--i~~~-~G--~~si~e-------------~~~~~ge~~fr~~e 153 (215)
+++.|+|+||+||||||++..||++++..+++.|.. +..+ .| ..+..+ .-+.+....|.+.-
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a 81 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA 81 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence 467899999999999999999999999999999975 2221 01 001111 01112234466555
Q ss_pred HHHHHHHHcCCCeEEEeCCc
Q 028019 154 TEVLKQLSSMGRLVVCAGNG 173 (215)
Q Consensus 154 ~~vL~~L~~~~~~VLa~G~g 173 (215)
...+..+...+...|-+||.
T Consensus 82 ~~~i~~i~~~gk~pIlVGGT 101 (322)
T 3exa_A 82 TPLITEIHERGRLPFLVGGT 101 (322)
T ss_dssp HHHHHHHHHTTCEEEEESCC
T ss_pred HHHHHHHHhCCCcEEEEcCc
Confidence 56677776666655555544
No 112
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.25 E-value=4.3e-07 Score=78.85 Aligned_cols=75 Identities=15% Similarity=0.035 Sum_probs=54.0
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhc---cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc--hhHHHH
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTE---LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD--SLVFEA 131 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D--~li~~~ 131 (215)
++|.++.+ .+.....+.+.+..+.+..+.+.. -++..|+|+|+||+|||++++.+|..++.+++..+ ++....
T Consensus 12 ~~~~di~G--~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 12 VTWEDIGG--LEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCGGGSCS--CHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCHHHhCC--HHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 67777776 445555566666665555555554 25788999999999999999999999999887665 444443
Q ss_pred hC
Q 028019 132 AG 133 (215)
Q Consensus 132 ~G 133 (215)
.|
T Consensus 90 ~g 91 (301)
T 3cf0_A 90 FG 91 (301)
T ss_dssp HT
T ss_pred cC
Confidence 33
No 113
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.25 E-value=2.8e-07 Score=75.78 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=24.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
++..|+|+||+||||||+++.|++.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 578899999999999999999999874
No 114
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.25 E-value=2.7e-06 Score=71.28 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=24.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
+++.|+|.|++||||||+++.|++.|.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999999883
No 115
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.22 E-value=4.5e-06 Score=69.55 Aligned_cols=28 Identities=14% Similarity=0.038 Sum_probs=24.7
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
-++..|.|.|+.||||||+++.|+..-|
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~~g 45 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 45 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhccC
Confidence 4678899999999999999999998733
No 116
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.19 E-value=3.3e-06 Score=71.55 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=25.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
++..|+|.|++||||||+++.|++.|+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 6788999999999999999999998765
No 117
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.18 E-value=6.4e-07 Score=78.38 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=50.8
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc--CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++|.+..+ .+.....+.+.+.++.+..+++... ++..|+|+|+||+|||++|+.+|+.++.+++..+
T Consensus 15 ~~~~di~G--~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 15 VKWEDVAG--LEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp CCGGGSCS--CHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHHhcC--hHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence 56888776 5555556666666666655554442 5678999999999999999999999999987654
No 118
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.14 E-value=9.3e-07 Score=74.95 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=47.2
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
++|.+..+ .+.....+.+.+..+.+..++...+ .+..++|+|+||+|||++++.+|+.++.+++..
T Consensus 14 ~~~~~i~G--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 14 VRYEDIGG--LEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCGGGSCS--CHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHhcC--HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 55666665 4444444555555555555555443 678899999999999999999999999887654
No 119
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.11 E-value=3e-06 Score=75.51 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=29.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC-------CceeecchhH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV 128 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg-------~~~ld~D~li 128 (215)
+..|.|+|++||||||+++.|+..++ ..++..|.+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 34788999999999999999999886 4457888754
No 120
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.11 E-value=1.3e-06 Score=77.87 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=51.4
Q ss_pred eecccCCCCccccccccCCCchhhHHHHHHhHhhcc--CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 56 TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 56 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.++|.++.+ .+.....+.+.+.++.+..+++... ++..|+|+|+||+|||++|+.+|+.++.+++..+
T Consensus 47 ~~~~~di~G--~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~ 116 (355)
T 2qp9_X 47 NVKWEDVAG--LEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 116 (355)
T ss_dssp CCCGGGSCC--GGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCHHHhCC--HHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEee
Confidence 477888876 5555556666666665555555442 4577999999999999999999999999887654
No 121
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.10 E-value=1.2e-06 Score=74.78 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=43.3
Q ss_pred ecccCCCCccccccccCCCchhhHHHHHHhHhhcc--CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 57 RSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 57 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++|.+..+ .+.....+.+.+..+.+..++...+ ++..|+|+|+||+|||++++.+|+.++.+++..+
T Consensus 18 ~~~~~i~G--~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~ 86 (297)
T 3b9p_A 18 VEWTDIAG--QDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNIS 86 (297)
T ss_dssp CCGGGSCC--CHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHhCC--hHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEee
Confidence 56666655 2223333333333333333333322 5789999999999999999999999998876543
No 122
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.09 E-value=4.7e-06 Score=74.34 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=33.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l 127 (215)
.++.|+|+||+||||||++..||++++..+++.|..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 456899999999999999999999999999999974
No 123
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.07 E-value=9.9e-07 Score=76.97 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=31.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~li~ 129 (215)
++..|.|+|++||||||+++.|++.+| +.++++|+++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 356799999999999999999999988 78999999874
No 124
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.06 E-value=5.5e-06 Score=69.72 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=26.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
+++.|+|.|++||||||+++.|++.|+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5788999999999999999999999986
No 125
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.06 E-value=6.4e-06 Score=75.83 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=52.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh--HHHHh-C--CCchH-------------HHHhhhhhHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEAA-G--GESAA-------------KAFRESDEKGYQQAET 154 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l--i~~~~-G--~~si~-------------e~~~~~ge~~fr~~e~ 154 (215)
++.|+|+||+||||||++..||+.++..+++.|.. +..+. | ..+.. +.-+.+....|.+.-.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~ 81 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECM 81 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHH
Confidence 46789999999999999999999999999999873 32210 0 00000 1111223345666666
Q ss_pred HHHHHHHcCCCeEEEeCCc
Q 028019 155 EVLKQLSSMGRLVVCAGNG 173 (215)
Q Consensus 155 ~vL~~L~~~~~~VLa~G~g 173 (215)
..+..+...+...|-+||.
T Consensus 82 ~~i~~i~~~g~~pilVGGT 100 (409)
T 3eph_A 82 NAIEDIHRRGKIPIVVGGT 100 (409)
T ss_dssp HHHHHHHTTTCEEEEECSC
T ss_pred HHHHHHHhcCCCEEEECCh
Confidence 6777777666655555543
No 126
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.00 E-value=3.1e-06 Score=71.03 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=29.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.++.|+|+|+||+||||+++.+|..++.+++..+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~ 77 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 77 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 3667999999999999999999999998876554
No 127
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.96 E-value=1.6e-06 Score=85.81 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=57.7
Q ss_pred eecccCCCCccccccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 56 TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 56 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.++|.++.+ ++.....+.+.+.++.+..+.+..+ +++.|+|.||||+|||.+|+.+|.+++++|+..+
T Consensus 473 ~v~w~digg--l~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~ 543 (806)
T 3cf2_A 473 QVTWEDIGG--LEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543 (806)
T ss_dssp CCCSTTCCS--CHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred CCCHHHhCC--HHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEec
Confidence 377888877 6677778888888888887777664 6788999999999999999999999999998765
No 128
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.96 E-value=1.2e-05 Score=63.84 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=42.3
Q ss_pred cccccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHh----CC--ceeecchhHHH
Q 028019 68 VTKVAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADAL----RY--YYFDSDSLVFE 130 (215)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~L----g~--~~ld~D~li~~ 130 (215)
++.++.-++.-.....+++....+ ++..++|+|++|+||||+++.++..+ |. .+++..+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 344443233333444566666554 57899999999999999999999887 43 45666665543
No 129
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.95 E-value=2.8e-06 Score=77.99 Aligned_cols=67 Identities=16% Similarity=0.085 Sum_probs=48.7
Q ss_pred eecccCCCCccccccccCCCchhhHHHHHHhHhhc--cCCcEEEEEccCCCcHHHHHHHHHHHh-CCceeec
Q 028019 56 TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTE--LKGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDS 124 (215)
Q Consensus 56 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~I~LiG~pGSGKSTlAk~LA~~L-g~~~ld~ 124 (215)
.++|.++.+ ++.....+.+.++++.+..+++.. .+++.|+|+|+||+|||++|+.+|..+ +.+++..
T Consensus 130 ~~~~~di~G--~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v 199 (444)
T 2zan_A 130 NVKWSDVAG--LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI 199 (444)
T ss_dssp CCCGGGSCS--CHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEE
T ss_pred CCCHHHhcC--HHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEE
Confidence 367777776 444555555556666555555443 356899999999999999999999999 7776543
No 130
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.94 E-value=5.9e-06 Score=71.62 Aligned_cols=34 Identities=6% Similarity=-0.127 Sum_probs=29.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.+..++|.|+||+|||++|+.+|+++|.+++..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 4567888999999999999999999999887654
No 131
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.94 E-value=0.00011 Score=60.44 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=24.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh---CCceee
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFD 123 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L---g~~~ld 123 (215)
-|.|-|+-||||||.++.|++.| |..++-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~ 33 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 47888999999999999999988 566553
No 132
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.94 E-value=3.3e-06 Score=75.63 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=30.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.+..|+|+|+||+|||++|+.+|++++.+++..+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~ 180 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS 180 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEee
Confidence 4689999999999999999999999999987554
No 133
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.93 E-value=3.2e-06 Score=75.21 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=30.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.+..|+|+|+||+|||++|+.+|+.++.+++..+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~ 149 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSIS 149 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEe
Confidence 5788999999999999999999999998876543
No 134
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.85 E-value=1.2e-05 Score=66.74 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=29.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
.+..|+|+|+||+|||++++.+|++++.+++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 567899999999999999999999999887654
No 135
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.83 E-value=7.8e-06 Score=80.60 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=42.4
Q ss_pred ccCCCchhhHHHHHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 71 VAAEDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
...+.+.+.++.+..+++..+ ++..|+|+|+|||||||+++.||..++..++..+
T Consensus 213 ~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 213 LAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp GGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 344444455555666666654 6789999999999999999999999998877655
No 136
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.82 E-value=1.3e-05 Score=70.97 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=32.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecch
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~ 126 (215)
++..|+|+|+||+|||++|+.+|+.++.+++..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence 67889999999999999999999999999987754
No 137
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.81 E-value=1.4e-05 Score=66.97 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=31.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc----------eeecchhH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----------YFDSDSLV 128 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~----------~ld~D~li 128 (215)
++..|.|+|++||||||+++.|+..+|.. +++.|.++
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~ 70 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFY 70 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCc
Confidence 56688999999999999999999999876 67777643
No 138
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.81 E-value=1.2e-05 Score=74.59 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=33.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecch
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~ 126 (215)
+++..|+|+|+||+||||+|+.||+.++++++..|.
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 467889999999999999999999999999988774
No 139
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.79 E-value=6.4e-05 Score=59.77 Aligned_cols=36 Identities=19% Similarity=0.009 Sum_probs=28.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~ 129 (215)
++..+.|+|++||||||+++.+. .+...++.|.+.-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~g 43 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCRG 43 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHHH
Confidence 67889999999999999999864 3566777776543
No 140
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.74 E-value=8.3e-05 Score=62.29 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=33.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC---CceeecchhHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLVFE 130 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg---~~~ld~D~li~~ 130 (215)
++..|.|+|+|||||+|+|+.+.+.+| ++.+...+.+++
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~ 51 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKE 51 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHH
Confidence 567888999999999999999999885 667888777664
No 141
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.73 E-value=1.5e-05 Score=63.87 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..|.|+|++||||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57889999999999999999999876
No 142
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.71 E-value=2.9e-05 Score=65.81 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=30.4
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
..+..++|+|+||+|||++++.+|+.++.+++..+
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~ 82 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 35778999999999999999999999998876543
No 143
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.69 E-value=5.9e-05 Score=58.33 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=24.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
-.+..++|+|++|+|||++++.+++.+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999997
No 144
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.68 E-value=2.5e-05 Score=66.06 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=30.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.+..++|+|+||+|||++|+.+|+.++.+++..+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~ 96 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 96 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 5678999999999999999999999999887653
No 145
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.67 E-value=4.8e-05 Score=59.00 Aligned_cols=27 Identities=22% Similarity=0.092 Sum_probs=24.6
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
-.+..++|+|++|+|||++++.+++.+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999998
No 146
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.66 E-value=1.7e-05 Score=74.19 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=36.9
Q ss_pred hhhHHHHHHhHhhc---cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 77 SFAVKKKAADISTE---LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 77 ~~~~~~~~~~~~~~---l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.+..+.+..+++.. -.+..|+|+|+||+|||++|+.+|+.++.+|+..+
T Consensus 219 ~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 219 MVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp HTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred HHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 33333344444443 35678999999999999999999999999887655
No 147
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.66 E-value=2.9e-05 Score=68.91 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=31.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecch
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~ 126 (215)
.+..|+|+|+||+|||++|+.+|+.++.+++..|.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~ 105 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDA 105 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecc
Confidence 56789999999999999999999999988876653
No 148
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.65 E-value=3.2e-05 Score=61.88 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=25.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
++++.|+|+|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5678999999999999999999998763
No 149
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.61 E-value=1.8e-05 Score=66.44 Aligned_cols=34 Identities=29% Similarity=0.290 Sum_probs=29.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.+..++|+|+||+|||++++.+|+.++.+++..+
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~ 76 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG 76 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence 3566999999999999999999999998876554
No 150
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.60 E-value=4.5e-05 Score=66.57 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=31.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-------CceeecchhH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV 128 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-------~~~ld~D~li 128 (215)
++..|.|+|++||||||+++.|+..++ +.+++.|...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 567889999999999999999999887 5577777653
No 151
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.56 E-value=3.6e-05 Score=65.68 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=24.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.+..|+|+|+||+|||++|+.+|+.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999998
No 152
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.56 E-value=3.6e-05 Score=71.93 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=30.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.++.|+|+|+||+|||++++.+|..++.+++..+
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is 81 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence 3567999999999999999999999999987653
No 153
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.56 E-value=5.9e-05 Score=63.00 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=28.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++.++|+|+|||||||+++.++..++..++..+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 455999999999999999999999987766554
No 154
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.55 E-value=9.5e-05 Score=59.81 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=30.7
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC---C--ceeecchhH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR---Y--YYFDSDSLV 128 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg---~--~~ld~D~li 128 (215)
-.+..++|+|++|+||||+++.+++.++ . .+++.+++.
T Consensus 50 ~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 3678999999999999999999999875 2 456665543
No 155
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.53 E-value=6.2e-05 Score=69.05 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=30.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC--Cceeecc
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSD 125 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg--~~~ld~D 125 (215)
.++..++|.||||+|||++|+.+|+.++ ++++..+
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV 97 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence 3668899999999999999999999999 7776655
No 156
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.53 E-value=6.4e-05 Score=59.07 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=30.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---C--Cceeecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D~l 127 (215)
++..++|+|++|+||||+++.++..+ | ..+++..++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 78899999999999999999999988 6 445655543
No 157
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.53 E-value=2.4e-05 Score=63.11 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
+.|+|+|++||||||+++.|++.++.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999853
No 158
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.49 E-value=7.1e-05 Score=64.85 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=30.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecch
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~ 126 (215)
....|+|+|+||+|||++|+.+|+.++.+++..+.
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecc
Confidence 45679999999999999999999999998876653
No 159
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.48 E-value=0.0002 Score=61.94 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=33.4
Q ss_pred HHhHhhcc--CCcEEEEEccCCCcHHHHHHHHHHHh---CCce--eecchhH
Q 028019 84 AADISTEL--KGTSVFLVGMNNAIKTHLGKFLADAL---RYYY--FDSDSLV 128 (215)
Q Consensus 84 ~~~~~~~l--~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~~--ld~D~li 128 (215)
.+.+.... .+..++|+|+||+||||+++.+++.+ +.++ ++.+++.
T Consensus 26 ~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 26 VKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp HHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred HHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 44444443 45789999999999999999999988 6654 4544443
No 160
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.48 E-value=9.7e-05 Score=60.02 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=30.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D~li~ 129 (215)
++..|.|+|++||||||+++.|+..+ +.. +++.|.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 56789999999999999999999976 543 456676543
No 161
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.45 E-value=0.00011 Score=56.71 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=26.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCcee
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYF 122 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~~l 122 (215)
.+..|+|.|+||+|||++|+.+++.. +.+++
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 56679999999999999999999876 45554
No 162
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.43 E-value=9e-05 Score=61.58 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=26.7
Q ss_pred HhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 85 ~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
++-.+.++++.|+|+||+||||||+.+.|++.+.
T Consensus 11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4445567899999999999999999999998865
No 163
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.43 E-value=0.00011 Score=62.56 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=28.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++.++|+|+|||||||+++.++..++..++..+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 445999999999999999999999987766554
No 164
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.42 E-value=0.00023 Score=57.08 Aligned_cols=37 Identities=24% Similarity=0.148 Sum_probs=29.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh---CCc--eeecchhHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLVFE 130 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D~li~~ 130 (215)
..++|+|++|+|||++++.++..+ +.. +++..++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE 96 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence 789999999999999999999988 443 3555555443
No 165
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.42 E-value=0.00011 Score=62.90 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=32.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~ 130 (215)
..|.|+|.+||||||+++.|++.+|++++...+.+.+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~ 38 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKD 38 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHH
Confidence 4789999999999999999999999999887655433
No 166
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.41 E-value=8e-05 Score=59.72 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=23.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
++.+.|+||+||||||+.+.|+..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45789999999999999999998764
No 167
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.41 E-value=7.7e-05 Score=62.71 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=31.7
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~l 127 (215)
..++.|+|+|++|+||||+|..|+++.+ .+++.|..
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 3678899999999999999999999866 88888865
No 168
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.39 E-value=0.00012 Score=68.20 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=30.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.++.++|+|+||+||||+|+.+|+.+|+.++..+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in 109 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN 109 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 3478999999999999999999999999887654
No 169
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.39 E-value=0.00011 Score=64.54 Aligned_cols=30 Identities=27% Similarity=0.223 Sum_probs=26.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCce
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYY 121 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ 121 (215)
.+..++|+|+||+||||+++.+|..++..+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 346799999999999999999999998764
No 170
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.32 E-value=0.00021 Score=62.28 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=31.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC-------Ccee-ecchhHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR-------YYYF-DSDSLVF 129 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg-------~~~l-d~D~li~ 129 (215)
-++..|.|+|++||||||+++.|++.++ ...+ ..|.++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~ 75 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL 75 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence 3567889999999999999999999885 3345 8888754
No 171
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.32 E-value=0.00012 Score=59.63 Aligned_cols=27 Identities=30% Similarity=0.148 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
+++.+.|+||+||||||+.+.|+..+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 467899999999999999999998763
No 172
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.31 E-value=0.00015 Score=58.69 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=24.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCce
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYYY 121 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ 121 (215)
+.+.|+|++||||||+.+.|+..++..+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 3689999999999999999999987544
No 173
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.30 E-value=0.00027 Score=55.78 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
....++|+|++|+|||++++.+++.+
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34459999999999999999999986
No 174
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.29 E-value=2.4e-05 Score=77.18 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=29.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++..++|+|+||+||||+|+.+|..++..++..+
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~ 543 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 5678999999999999999999999998876543
No 175
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.28 E-value=0.00022 Score=67.22 Aligned_cols=37 Identities=30% Similarity=0.341 Sum_probs=31.6
Q ss_pred hhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceeec
Q 028019 88 STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (215)
Q Consensus 88 ~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~ 124 (215)
...+++..++|+|+||+||||+++.+|..++.+++..
T Consensus 103 ~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 103 TKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp SSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 3345788999999999999999999999998876544
No 176
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.27 E-value=0.00036 Score=60.83 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=29.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh-----------CCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----------RYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L-----------g~~~ld~D 125 (215)
.+..++|+|++|+|||++++.+++.+ ++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 46789999999999999999999988 88777655
No 177
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.27 E-value=0.00015 Score=62.08 Aligned_cols=32 Identities=22% Similarity=0.119 Sum_probs=28.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceee
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld 123 (215)
.+..++|+|++|+|||++|+.+++.++.+++.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~ 68 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRV 68 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 45789999999999999999999999988753
No 178
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.26 E-value=0.00013 Score=60.22 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=17.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHH-HHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLA-DAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA-~~L 117 (215)
++..|.|+|++||||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 67889999999999999999999 765
No 179
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.25 E-value=0.00038 Score=55.39 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
.+..++|+|++|+||||+++.+++.++.
T Consensus 44 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 44 IHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3457999999999999999999998854
No 180
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.25 E-value=0.00026 Score=57.61 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=24.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
-++..+.|+|++||||||+.+.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3678999999999999999999998874
No 181
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.24 E-value=0.00016 Score=62.77 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=29.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---------CCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---------RYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---------g~~~ld~D 125 (215)
.+..++|+|+||+||||+++.+++.+ ++.++..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 56789999999999999999999988 77765544
No 182
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.23 E-value=0.0001 Score=56.90 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=27.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.+..|+|.|+||+|||++|+.+++..+ +++..|
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~ 58 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPA 58 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCS
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEec
Confidence 456799999999999999999998877 555443
No 183
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.22 E-value=0.00033 Score=64.57 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=31.5
Q ss_pred HhhccCCcEEEEEccCCCcHHHHHHHHHHHh----------CCceeecch
Q 028019 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSDS 126 (215)
Q Consensus 87 ~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~L----------g~~~ld~D~ 126 (215)
+........++|+|+||+|||++++.||+.+ +..++..|.
T Consensus 195 ~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 195 VLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp HHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 3333567789999999999999999999997 677776664
No 184
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.22 E-value=0.00024 Score=61.97 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=25.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
++..++|+|+||+|||++++.+|+.++.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4579999999999999999999999984
No 185
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.18 E-value=0.00023 Score=60.60 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=22.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
..++|+|+||+|||++|+.+|+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999999998
No 186
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.18 E-value=0.00018 Score=62.34 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=28.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceee
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld 123 (215)
.+..++|.|+||+|||++++.+|+.++.+++.
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~~~~~~~ 76 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTMDLDFHR 76 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 35689999999999999999999999987653
No 187
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.16 E-value=0.00028 Score=60.95 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=29.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh------CCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL------RYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L------g~~~ld~D 125 (215)
.+..++|+|++|+||||+++.+++.+ ++.++..+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 46789999999999999999999988 77766554
No 188
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.14 E-value=0.00025 Score=58.66 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 67889999999999999999999876
No 189
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00031 Score=62.37 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=25.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++.+|+|.|+||+|||++++.+++.+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999999999999
No 190
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.12 E-value=0.0004 Score=63.99 Aligned_cols=33 Identities=21% Similarity=0.030 Sum_probs=29.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
...++|.|+||+||||+|+.+++.++..++..+
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 368999999999999999999999999887655
No 191
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.11 E-value=0.00033 Score=65.71 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=28.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
++.|+|+|+||+||||+++.+|..++.+++..+
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~ 96 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 96 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 556999999999999999999999988876543
No 192
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.11 E-value=0.00049 Score=59.25 Aligned_cols=34 Identities=12% Similarity=-0.023 Sum_probs=28.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.+..+++.|+||+|||++++.+|+.++..++..+
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 4456778888999999999999999998877654
No 193
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.07 E-value=0.00035 Score=58.34 Aligned_cols=28 Identities=21% Similarity=0.120 Sum_probs=25.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
.++..++|+||+||||||+.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4788999999999999999999999764
No 194
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.06 E-value=0.00036 Score=58.91 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=27.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceee
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld 123 (215)
+...|+|.||||+||||+|..||+.++-..+.
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 34579999999999999999999999765544
No 195
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.06 E-value=0.00045 Score=62.59 Aligned_cols=32 Identities=19% Similarity=0.052 Sum_probs=29.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceee
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld 123 (215)
++..|.|+|++||||||+++.|+..++..++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 67799999999999999999999999877665
No 196
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.05 E-value=0.00079 Score=58.54 Aligned_cols=31 Identities=16% Similarity=0.023 Sum_probs=26.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh----CCceeecc
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL----RYYYFDSD 125 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L----g~~~ld~D 125 (215)
.++|+|++|+||||+++.+++.+ ++.++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 89999999999999999999998 56655443
No 197
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.04 E-value=0.00036 Score=57.13 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA 114 (215)
++..+.|+|++||||||+.+.++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 78899999999999999999998
No 198
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.04 E-value=0.00072 Score=53.79 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=24.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
-++..+.|+|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 367789999999999999999999987
No 199
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.01 E-value=0.00041 Score=61.05 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=29.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-------Cceeecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-------~~~ld~D~l 127 (215)
++..|.|+|++||||||+++.|+..+. ..++..|..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 677889999999999999999999773 346666654
No 200
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.00 E-value=0.00069 Score=65.73 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=31.4
Q ss_pred hhccCCcEEEEEccCCCcHHHHHHHHHHHh----------CCceeecch
Q 028019 88 STELKGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSDS 126 (215)
Q Consensus 88 ~~~l~~~~I~LiG~pGSGKSTlAk~LA~~L----------g~~~ld~D~ 126 (215)
.....+..++|+|+||+|||++++.||+.+ +..++..|.
T Consensus 196 l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 196 LSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp HHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 333467789999999999999999999997 777777665
No 201
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.97 E-value=0.00054 Score=55.14 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=27.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh-----CCceeecch
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS 126 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L-----g~~~ld~D~ 126 (215)
++..+.|+|++||||||+++.++..+ ...+++.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 67889999999999999999999654 234556554
No 202
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.97 E-value=0.00042 Score=56.05 Aligned_cols=26 Identities=23% Similarity=0.115 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999999854
No 203
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.96 E-value=0.00097 Score=61.04 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=34.3
Q ss_pred HHHHhHhhccC-CcEEEEEccCCCcHHHHHHHHHHHh-----CCc--eeecchhH
Q 028019 82 KKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADAL-----RYY--YFDSDSLV 128 (215)
Q Consensus 82 ~~~~~~~~~l~-~~~I~LiG~pGSGKSTlAk~LA~~L-----g~~--~ld~D~li 128 (215)
.....+..... +..++|+|+||+||||+++.++..+ +.. +++...+.
T Consensus 118 ~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 118 HAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp HHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred HHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 34555555433 6789999999999999999999988 555 44554443
No 204
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.94 E-value=0.00052 Score=56.32 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=22.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
+.|+|+||+|+|||||.+.|.+.+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589999999999999999988763
No 205
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.92 E-value=0.00051 Score=57.54 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=24.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
.+..|+|+|++|+|||++|+.+++.++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 457899999999999999999999874
No 206
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=96.87 E-value=0.0026 Score=57.07 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=27.1
Q ss_pred ccCCcEEEEEccCCCcHHHHH-HHHHHHhCCc
Q 028019 90 ELKGTSVFLVGMNNAIKTHLG-KFLADALRYY 120 (215)
Q Consensus 90 ~l~~~~I~LiG~pGSGKSTlA-k~LA~~Lg~~ 120 (215)
..++..|+|-|+-||||||++ +.|++.++..
T Consensus 9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~ 40 (341)
T 1osn_A 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAITP 40 (341)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence 356788999999999999999 9999998754
No 207
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.81 E-value=0.00075 Score=54.21 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=28.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC--Cceeecch
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDS 126 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg--~~~ld~D~ 126 (215)
++..+.|+|++||||||+++.++...+ ..|++.+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 678899999999999999999987444 34666654
No 208
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.77 E-value=0.00091 Score=59.00 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=24.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++.++.|+|++||||||+.+.|+..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 78899999999999999999999887
No 209
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.76 E-value=0.00083 Score=54.89 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+..+.|+|++||||||+.+.|+..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 3578999999999999999999987
No 210
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.76 E-value=0.0014 Score=53.34 Aligned_cols=35 Identities=17% Similarity=0.053 Sum_probs=27.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh-----CCceeecch
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS 126 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L-----g~~~ld~D~ 126 (215)
++..+.|+|+||+||||++..++... +..|++.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 67889999999999999998887653 344667654
No 211
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.75 E-value=0.0007 Score=56.98 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 67889999999999999999997654
No 212
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.74 E-value=0.0011 Score=54.62 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=33.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~~ 130 (215)
..+.-|+|+|++|+||||+|..|.++ |+.++.=|...-.
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v~i~ 52 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCDDVIDLK 52 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEEEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEEEEE
Confidence 46788999999999999999999885 9998887765443
No 213
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.74 E-value=0.0019 Score=56.01 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
+..++|+|++|+||||+++.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456899999999999999999999865
No 214
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.70 E-value=0.0015 Score=56.27 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=22.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
..++|+|+||+||||+++.+++.++
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4499999999999999999999874
No 215
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.70 E-value=0.0008 Score=56.15 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67889999999999999999997654
No 216
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.69 E-value=0.001 Score=54.23 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..+.|+|++||||||+++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 6789999999999999999999984
No 217
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.69 E-value=0.0012 Score=53.50 Aligned_cols=25 Identities=24% Similarity=0.070 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.+.|.|+|++||||||+...|++.|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678999999999999999999876
No 218
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.67 E-value=0.0011 Score=58.02 Aligned_cols=26 Identities=35% Similarity=0.323 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..|.|+|++||||||+.+.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 219
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.65 E-value=0.00076 Score=55.35 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=23.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCc--eeec
Q 028019 96 VFLVGMNNAIKTHLGKFLADALRYY--YFDS 124 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~Lg~~--~ld~ 124 (215)
|+|+|.+|||||++|..|+.. +.+ |+++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence 789999999999999999987 754 5555
No 220
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.65 E-value=0.0025 Score=55.49 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=29.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh----CC--ceeecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL----RY--YYFDSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L----g~--~~ld~D~l 127 (215)
++..|.|+|++|+||||++..||..+ |. .+++.|..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 56799999999999999999999765 42 35777753
No 221
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.64 E-value=0.0013 Score=63.65 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=27.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceeecc
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D 125 (215)
.++|+|+||+|||++|+.+|+.++.+++..|
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~ 520 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFD 520 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEe
Confidence 6999999999999999999999998776443
No 222
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.64 E-value=0.00064 Score=58.61 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=23.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
...|+|+|+||+|||++|+.+++.++
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34599999999999999999999987
No 223
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.64 E-value=0.0012 Score=56.48 Aligned_cols=27 Identities=15% Similarity=0.071 Sum_probs=24.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
-++..+.|+|++||||||+.+.|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 467789999999999999999999865
No 224
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.64 E-value=0.0022 Score=54.39 Aligned_cols=27 Identities=22% Similarity=0.112 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
....++|.|++|+||||+++.+++.+.
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 344699999999999999999999873
No 225
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.63 E-value=0.0014 Score=52.94 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=22.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..++++|+||+||||++..++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999997777654
No 226
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.63 E-value=0.0016 Score=64.24 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=29.4
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh----------CCceeecc
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSD 125 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L----------g~~~ld~D 125 (215)
-.+..++|+|+||+|||++++.||+.+ +..++..|
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 355679999999999999999999998 77766554
No 227
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.63 E-value=0.0013 Score=56.08 Aligned_cols=27 Identities=11% Similarity=0.012 Sum_probs=24.3
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
-++..+.|+|+||+||||+++.++..+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 378899999999999999999998865
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.63 E-value=0.0012 Score=57.78 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..|.|+|++||||||+.+.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 229
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.63 E-value=0.00097 Score=56.17 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67889999999999999999997643
No 230
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.59 E-value=0.0023 Score=55.72 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=21.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC
Q 028019 96 VFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 96 I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
++|+|++|+||||+++.+|+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999873
No 231
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.58 E-value=0.0015 Score=57.07 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=34.9
Q ss_pred HHHhHhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhC----Cc--eeecchhHHHH
Q 028019 83 KAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALR----YY--YFDSDSLVFEA 131 (215)
Q Consensus 83 ~~~~~~~~l---~~~~I~LiG~pGSGKSTlAk~LA~~Lg----~~--~ld~D~li~~~ 131 (215)
.+.+..... .+..++|.|++|+|||++++.++..+. .. +++..+++.+.
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV 196 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence 344444443 268999999999999999999998664 43 46666665544
No 232
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.57 E-value=0.0013 Score=55.69 Aligned_cols=25 Identities=48% Similarity=0.557 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..+.|+|++||||||+.+.|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 7788999999999999999999764
No 233
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.57 E-value=0.0011 Score=56.99 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 67889999999999999999997644
No 234
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.57 E-value=0.0012 Score=56.21 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=29.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceeecch
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~ 126 (215)
+..++|+|++|+||||+++.+++.+++.+++.+.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 3789999999999999999999998877777654
No 235
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.56 E-value=0.0011 Score=56.65 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67889999999999999999998654
No 236
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.56 E-value=0.0028 Score=61.28 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=25.4
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 90 ~l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.-.+..++|+|+||+|||++++.|++.+
T Consensus 204 ~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 204 RRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 3467889999999999999999999987
No 237
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.54 E-value=0.0013 Score=58.34 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=25.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
+..+.|+|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6789999999999999999999987643
No 238
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.54 E-value=0.0012 Score=57.17 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.++|+|++|+||||+++.++..+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999999975
No 239
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.54 E-value=0.0012 Score=56.02 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 78899999999999999999997754
No 240
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.54 E-value=0.0012 Score=57.23 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 67889999999999999999997654
No 241
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.54 E-value=0.0012 Score=55.62 Aligned_cols=26 Identities=35% Similarity=0.350 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999997654
No 242
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.53 E-value=0.0015 Score=57.40 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=28.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---C--Cceeecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D~l 127 (215)
++..|.|+|++||||||+++.||..+ | ..+++.|..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 35688999999999999999999876 3 335677754
No 243
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.53 E-value=0.0017 Score=55.10 Aligned_cols=27 Identities=33% Similarity=0.247 Sum_probs=24.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.++..+.|+|++||||||+++.++..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998644
No 244
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.52 E-value=0.0012 Score=56.12 Aligned_cols=26 Identities=27% Similarity=0.407 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999997654
No 245
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.52 E-value=0.0012 Score=55.13 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999998754
No 246
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.52 E-value=0.0028 Score=54.02 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=26.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCc--eeecc
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADALRYY--YFDSD 125 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~Lg~~--~ld~D 125 (215)
..++|.|++|+|||++++.+++.++.. +++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 689999999999999999999987643 55554
No 247
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.51 E-value=0.001 Score=55.20 Aligned_cols=25 Identities=32% Similarity=0.154 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..+.|+|++||||||+.+.|+-.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6788999999999999999999864
No 248
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.51 E-value=0.0012 Score=55.70 Aligned_cols=26 Identities=12% Similarity=0.122 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67889999999999999999998654
No 249
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.50 E-value=0.0016 Score=57.83 Aligned_cols=26 Identities=35% Similarity=0.293 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..|.|+|++||||||+.+.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
No 250
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.49 E-value=0.0016 Score=55.89 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..+.|+|++||||||+.+.|+-.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999999874
No 251
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.49 E-value=0.0013 Score=56.50 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 77889999999999999999998654
No 252
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.49 E-value=0.00097 Score=53.76 Aligned_cols=25 Identities=24% Similarity=0.196 Sum_probs=22.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.+.+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 253
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.47 E-value=0.0025 Score=53.80 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=21.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.++|+|++|+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 49999999999999999999987
No 254
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.47 E-value=0.0014 Score=56.02 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 67899999999999999999997654
No 255
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.46 E-value=0.0014 Score=56.37 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67889999999999999999997754
No 256
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.45 E-value=0.0013 Score=54.88 Aligned_cols=26 Identities=38% Similarity=0.314 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67889999999999999999997654
No 257
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.43 E-value=0.0022 Score=55.76 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=23.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
...|+|.||||+|||.+++.||..+++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 457999999999999999999997644
No 258
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.41 E-value=0.0016 Score=55.81 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 67889999999999999999997654
No 259
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.41 E-value=0.0024 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.080 Sum_probs=22.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.+.|.|+|++||||||+.+.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4678999999999999999998875
No 260
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.41 E-value=0.0022 Score=55.75 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=27.1
Q ss_pred HhHhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 85 ~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.++++.+.+..+.|+|++|+||||+.+.|+ .+
T Consensus 157 ~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 157 DELVDYLEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHTTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHhhccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 345556788999999999999999999998 54
No 261
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.41 E-value=0.0016 Score=55.48 Aligned_cols=26 Identities=35% Similarity=0.301 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 77889999999999999999997654
No 262
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.39 E-value=0.0016 Score=56.35 Aligned_cols=26 Identities=38% Similarity=0.359 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 77889999999999999999998654
No 263
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.39 E-value=0.0036 Score=50.40 Aligned_cols=28 Identities=18% Similarity=0.058 Sum_probs=24.6
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
-+...|+|+|.+|+||||+...|+..+.
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3667899999999999999999998863
No 264
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.39 E-value=0.0016 Score=55.61 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 67889999999999999999997654
No 265
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.38 E-value=0.0038 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=21.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.++|+|++|+|||++++.+++.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 49999999999999999999986
No 266
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.38 E-value=0.002 Score=57.96 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..|.|+|++||||||+.+.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 46789999999999999999999876
No 267
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.37 E-value=0.0041 Score=50.21 Aligned_cols=27 Identities=26% Similarity=0.087 Sum_probs=24.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
-+...|+|+|.+|+||||+...|+..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999876
No 268
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.36 E-value=0.002 Score=54.46 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
..+.|+|++||||||+.+.|+-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 678899999999999999998754
No 269
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.35 E-value=0.0022 Score=55.72 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.+..|+|+|+||+|||++|+.+++..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 56789999999999999999999965
No 270
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.34 E-value=0.003 Score=49.61 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=24.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
.+...+|+|++||||||+.+.|.-.++.
T Consensus 25 ~~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 25 SKGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp CSSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3457899999999999999999887753
No 271
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.34 E-value=0.0018 Score=55.09 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998654
No 272
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.30 E-value=0.0019 Score=57.89 Aligned_cols=34 Identities=29% Similarity=0.252 Sum_probs=28.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC--Cceeec
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDS 124 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg--~~~ld~ 124 (215)
.++..++|.|+||+|||++|..+|...| ..|++.
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 3567788999999999999999998755 447777
No 273
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.27 E-value=0.0021 Score=55.78 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=26.0
Q ss_pred hHhhccCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 86 DISTELKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 86 ~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+++..+.+..+.|+|++||||||+.+.|+..
T Consensus 162 ~lf~~l~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 162 ELKEYLKGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHSSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHhcCCeEEEECCCCCcHHHHHHHhccc
Confidence 4455568899999999999999999999653
No 274
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.21 E-value=0.0064 Score=53.15 Aligned_cols=29 Identities=10% Similarity=-0.020 Sum_probs=25.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
.+..++|.|++|+|||++|+.+|+.+...
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 34569999999999999999999998754
No 275
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.20 E-value=0.0033 Score=55.87 Aligned_cols=26 Identities=23% Similarity=0.115 Sum_probs=24.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+++.++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 77888999999999999999999886
No 276
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.19 E-value=0.0017 Score=60.96 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=25.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
..+..|+|+|+||+|||++|+.||+.++.
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hcCCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 35679999999999999999999998853
No 277
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.17 E-value=0.0049 Score=54.58 Aligned_cols=34 Identities=18% Similarity=0.064 Sum_probs=27.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CC--ceeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g~--~~ld~D 125 (215)
+...|.|+|.||+||||+...|+..+ |. .+++.|
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 55689999999999999999999886 43 356666
No 278
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.16 E-value=0.0035 Score=60.79 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=27.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh---CCce--eecchhH
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL---RYYY--FDSDSLV 128 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L---g~~~--ld~D~li 128 (215)
.++|+|+||+|||++|+.+|+.+ +.++ ++..++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 69999999999999999999998 4444 4444443
No 279
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.15 E-value=0.0031 Score=59.40 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=28.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh----CCcee-ecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL----RYYYF-DSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L----g~~~l-d~D~l 127 (215)
++..|.|+|++||||||+.+.|+..+ |-.++ +.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence 46789999999999999999999876 34445 35543
No 280
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.15 E-value=0.003 Score=56.97 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.||-.+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 67889999999999999999998754
No 281
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.15 E-value=0.0032 Score=56.50 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..|.|+|++||||||+.+.|+..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 67789999999999999999999865
No 282
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.09 E-value=0.0028 Score=55.18 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 77899999999999999999997654
No 283
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.09 E-value=0.0023 Score=57.04 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=24.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
++..+.|+|++||||||+.+.|+..+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 788999999999999999999988653
No 284
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.08 E-value=0.0025 Score=58.64 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=28.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC-----Cceeecchh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL 127 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~l 127 (215)
+..|.|+|++|+||||++..||..+. ..+++.|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 35899999999999999999999763 557788753
No 285
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.08 E-value=0.0021 Score=56.56 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 78899999999999999999997654
No 286
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.07 E-value=0.0035 Score=56.37 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.||-.+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 67889999999999999999998654
No 287
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.06 E-value=0.0048 Score=54.99 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=29.0
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh-----CCceeecch
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS 126 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L-----g~~~ld~D~ 126 (215)
.++..+.|.|+|||||||++..++... ...|++.+.
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 378889999999999999999998654 245677654
No 288
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.06 E-value=0.0035 Score=56.97 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.||-.+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 67889999999999999999998754
No 289
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.06 E-value=0.0035 Score=56.38 Aligned_cols=26 Identities=31% Similarity=0.226 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.||-.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 67789999999999999999998754
No 290
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.05 E-value=0.003 Score=54.27 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 29 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 29 NGEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp CSSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 37789999999999999999997654
No 291
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.05 E-value=0.0057 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=23.4
Q ss_pred CCcEEEE--EccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFL--VGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~L--iG~pGSGKSTlAk~LA~~L 117 (215)
.+..++| +|++|+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 5668888 9999999999999999877
No 292
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.04 E-value=0.0037 Score=56.33 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.||-.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 67789999999999999999998754
No 293
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.02 E-value=0.0031 Score=59.85 Aligned_cols=28 Identities=29% Similarity=0.403 Sum_probs=25.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
.+..++|+|+||+||||+++.+|..+..
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 5679999999999999999999998853
No 294
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.99 E-value=0.004 Score=56.31 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.||-.+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 57789999999999999999998754
No 295
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.98 E-value=0.0044 Score=54.64 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=28.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---C--Cceeecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D~l 127 (215)
++..|.|+|++|+||||++..||..+ | ..+++.|-.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 46689999999999999999999876 3 235677753
No 296
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.98 E-value=0.0041 Score=56.17 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.||-.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 67889999999999999999998654
No 297
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0036 Score=58.03 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++.++.|+|++||||||+.|.|+..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 78999999999999999999998855
No 298
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.96 E-value=0.0042 Score=56.18 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+--+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 67889999999999999999998654
No 299
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.95 E-value=0.0043 Score=46.39 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
...|+++|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999764
No 300
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.95 E-value=0.0045 Score=55.45 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..|+|+|++||||||+.+.++..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 55589999999999999999998876
No 301
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.94 E-value=0.0047 Score=55.64 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=25.0
Q ss_pred HhhccCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 87 ~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...+++..+.|+|++|+||||+.+.|+..
T Consensus 209 L~~~~~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 209 LEEALTGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp HHHHHTTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred HHHhcCCCEEEEECCCCccHHHHHHHHhcc
Confidence 333457889999999999999999999754
No 302
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.94 E-value=0.0031 Score=56.48 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.||-.+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 67889999999999999999998654
No 303
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.94 E-value=0.0052 Score=51.72 Aligned_cols=26 Identities=27% Similarity=-0.040 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..++++|+||+||||.+..++.++
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 57789999999999999999998877
No 304
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.92 E-value=0.0078 Score=55.73 Aligned_cols=37 Identities=27% Similarity=0.194 Sum_probs=30.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh---CCc--eeecchhHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLVF 129 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D~li~ 129 (215)
+..|+++|++|+||||++..||..+ |.. +++.|.+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 6789999999999999999999876 433 578886533
No 305
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.91 E-value=0.004 Score=57.45 Aligned_cols=37 Identities=24% Similarity=0.174 Sum_probs=29.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eeecchhH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLV 128 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D~li 128 (215)
++..|+++|++|+||||++..||..+ |.. +++.|.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 36788999999999999999999876 333 57877543
No 306
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.89 E-value=0.005 Score=52.85 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
..+.|+|++||||||+-+.|+..+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999866
No 307
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.89 E-value=0.0058 Score=54.22 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=31.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~ 129 (215)
.+..++|+|++|+||||++..|.++ |+.++.-|...-
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~i 179 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVEI 179 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEEE
Confidence 4789999999999999999999885 998887665543
No 308
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.89 E-value=0.005 Score=48.89 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=21.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
..|.|+|++|+||||+.+.|+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999998753
No 309
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.87 E-value=0.0048 Score=56.12 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..+.|+|++||||||+.+.|+..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 6788999999999999999999864
No 310
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.86 E-value=0.0046 Score=60.93 Aligned_cols=31 Identities=29% Similarity=0.262 Sum_probs=26.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh---CCceeec
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDS 124 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~L---g~~~ld~ 124 (215)
..++|+|++|+|||++|+.|++.+ +.+++..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 622 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 479999999999999999999998 5555433
No 311
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.86 E-value=0.0062 Score=49.50 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
.++..++|.|.||+|||+++..+|.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4788999999999999999988764
No 312
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.85 E-value=0.0051 Score=46.17 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|.+|+||||+...|...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 3457999999999999999988753
No 313
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.84 E-value=0.0073 Score=49.93 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=28.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh--CCc--eeecc
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL--RYY--YFDSD 125 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L--g~~--~ld~D 125 (215)
.+...++++|.+|+||||++..||..+ |.. .+|.|
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 356778899999999999999999876 333 57766
No 314
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.84 E-value=0.0055 Score=46.05 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++|+++|.+|+||||+...|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
No 315
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.83 E-value=0.0059 Score=53.32 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=28.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---------C--Cceeecch
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---------R--YYYFDSDS 126 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---------g--~~~ld~D~ 126 (215)
++..+.|.|+||+|||+++..++... + ..|++++.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 67889999999999999999999864 2 34777765
No 316
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.82 E-value=0.0054 Score=46.08 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=21.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+++|.+|+||||+...|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4468999999999999999999764
No 317
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.80 E-value=0.0073 Score=54.07 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=28.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh-----CCceeecc
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSD 125 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L-----g~~~ld~D 125 (215)
.++..+.|.|+||+||||+|..++... ...|++++
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 377889999999999999999998764 34578873
No 318
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.80 E-value=0.005 Score=47.84 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
++...|+|+|++|+||||+.+.|..
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3556899999999999999999976
No 319
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.77 E-value=0.006 Score=48.45 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
..|.|+|++|+||||+.+.|+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 320
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.77 E-value=0.0032 Score=56.46 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.||-.+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 67889999999999999999998654
No 321
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.77 E-value=0.0059 Score=53.20 Aligned_cols=34 Identities=24% Similarity=0.133 Sum_probs=28.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh---C--Cceeecch
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D~ 126 (215)
+..|.++|++|+||||++..||..+ | ..+++.|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5688899999999999999999877 3 34677774
No 322
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.75 E-value=0.0054 Score=47.24 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
...|.|+|++|+||||+.+.|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999975
No 323
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.75 E-value=0.0067 Score=49.97 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=20.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+..++++|+||||||+++..+...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999887544
No 324
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.73 E-value=0.0065 Score=53.71 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|+|||||||+.+.|+..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 67889999999999999999998765
No 325
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.72 E-value=0.0066 Score=52.67 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=27.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---C--Cceeecch
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D~ 126 (215)
++..|.++|++|+||||+++.||..+ | ..+++.|-
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 56789999999999999999999876 2 23556663
No 326
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.72 E-value=0.0054 Score=55.09 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
+..+|+|.|.+||||||++|.+.-
T Consensus 32 ~~~killlG~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQMRI 55 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHHHH
Confidence 568999999999999999999943
No 327
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.71 E-value=0.0065 Score=54.61 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=28.9
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh---C--Cceeecch
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D~ 126 (215)
.++..+.|.|+|||||||++..++..+ | ..|++...
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 367889999999999999999999875 3 34677654
No 328
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.70 E-value=0.0061 Score=52.77 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..+.|.|+||+|||+++..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6788899999999999999999975
No 329
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.69 E-value=0.0064 Score=47.42 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..|+|+|.+|+||||+.+.|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999764
No 330
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.69 E-value=0.01 Score=56.30 Aligned_cols=35 Identities=23% Similarity=0.118 Sum_probs=28.8
Q ss_pred HHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 83 ~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+.+.+...+....++|+|+||+||||+.+.++..+
T Consensus 194 Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 194 QASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp HHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44455555678899999999999999999998865
No 331
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.68 E-value=0.0072 Score=45.59 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
...|+|+|.+|+||||+...|...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999764
No 332
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.67 E-value=0.0071 Score=55.38 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=24.7
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
-++..|+|+|++||||||+.+.|+..+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3567899999999999999999999874
No 333
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.0085 Score=46.79 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|++|+||||+...|...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5578999999999999999999764
No 334
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.65 E-value=0.0036 Score=49.80 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=22.3
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHH
Q 028019 90 ELKGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 90 ~l~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
.-++..|.|+|++|+||||+.+.|+.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34677899999999999999998864
No 335
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.64 E-value=0.0032 Score=59.94 Aligned_cols=29 Identities=10% Similarity=0.324 Sum_probs=25.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceee
Q 028019 95 SVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld 123 (215)
.|+|+|+||+|||++|+.+|+.++...+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 79999999999999999999998755543
No 336
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.62 E-value=0.0085 Score=47.91 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
-+...|+|+|++|+||||+...|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998754
No 337
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.62 E-value=0.0071 Score=45.58 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=21.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|.+|+||||+...|...
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457999999999999999999763
No 338
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.59 E-value=0.0089 Score=48.97 Aligned_cols=26 Identities=15% Similarity=-0.102 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+++.++++|+|||||||.+-.++.++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46788999999999999999999887
No 339
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.56 E-value=0.0048 Score=54.46 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998865
No 340
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.56 E-value=0.0063 Score=45.91 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=20.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
...|+|+|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999988754
No 341
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.56 E-value=0.0036 Score=55.15 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=24.3
Q ss_pred hhccCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 88 STELKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 88 ~~~l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
.+.+++..+.|+|++|+||||+.+.|+..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence 44458899999999999999999999643
No 342
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.55 E-value=0.0061 Score=47.50 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.7
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++...|+++|.+|+||||+...|...
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 45568999999999999999999864
No 343
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.54 E-value=0.011 Score=52.45 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=22.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
...|.|+|+||+||||+-..|...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999999765
No 344
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.54 E-value=0.007 Score=53.66 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=31.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceeecchhHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF 129 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~~ld~D~li~ 129 (215)
.+.-|+|+|++|+||||+|-.|.+ .|+.++.=|...-
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~i 182 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEI 182 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEEE
Confidence 788999999999999999999976 5888887775543
No 345
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.54 E-value=0.0095 Score=45.57 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=21.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
+...|+|+|.+|+||||+...|..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999999865
No 346
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.53 E-value=0.012 Score=54.14 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=28.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh----CCc--eeecch
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL----RYY--YFDSDS 126 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L----g~~--~ld~D~ 126 (215)
++.|+++|++|+||||++..||..+ |.. ++|.|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 5688899999999999999999776 443 578885
No 347
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=95.52 E-value=0.0038 Score=55.77 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=26.0
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~ 119 (215)
.+++.|+|-|+-||||||+++.|++.++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45678999999999999999999999865
No 348
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.51 E-value=0.0076 Score=56.69 Aligned_cols=26 Identities=38% Similarity=0.379 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998644
No 349
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.49 E-value=0.0081 Score=54.69 Aligned_cols=25 Identities=28% Similarity=0.201 Sum_probs=22.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..+.|+|+||||||||++.|+-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 6789999999999999999988743
No 350
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.47 E-value=0.0072 Score=47.35 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
..|+|+|.+|+||||+.+.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 351
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.39 E-value=0.0086 Score=45.23 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=20.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
...|+++|.+|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999875
No 352
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.38 E-value=0.011 Score=44.76 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
+...|+|+|.+|+||||+...|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999965
No 353
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.38 E-value=0.0086 Score=56.51 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 78899999999999999999998765
No 354
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.37 E-value=0.012 Score=51.36 Aligned_cols=35 Identities=11% Similarity=0.033 Sum_probs=27.9
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh---C--Cceeecc
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD 125 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L---g--~~~ld~D 125 (215)
.++..++|.|.||+||||++..+|... | ..|+++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 478899999999999999999998764 2 3356654
No 355
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.35 E-value=0.0093 Score=55.50 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=27.3
Q ss_pred cCCcEEEEEccCCCcHHHHHHH--HHHHh----CCceeecch
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKF--LADAL----RYYYFDSDS 126 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~--LA~~L----g~~~ld~D~ 126 (215)
.++..+.|+|++||||||+++. ++-.+ |..+++..+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 3788999999999999999999 44433 445666544
No 356
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.35 E-value=0.013 Score=52.63 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=29.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh-----CCceeecch
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS 126 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L-----g~~~ld~D~ 126 (215)
.++..+.|.|+||+||||++..++... ...|++++.
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 467889999999999999999998764 345777764
No 357
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.34 E-value=0.011 Score=44.61 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|.+|+||||+...|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999764
No 358
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.33 E-value=0.011 Score=44.68 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=20.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
..|+|+|.+|+||||+...|...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999999754
No 359
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.32 E-value=0.011 Score=45.08 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|.+|+||||+...|...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999988763
No 360
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.31 E-value=0.012 Score=44.52 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLA 114 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA 114 (215)
..+|+|+|.+|+||||+.+.|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 3579999999999999999884
No 361
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.30 E-value=0.0082 Score=56.66 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 78899999999999999999998755
No 362
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.30 E-value=0.012 Score=44.50 Aligned_cols=22 Identities=18% Similarity=0.230 Sum_probs=19.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
..|+|+|.+|+||||+...|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4799999999999999999875
No 363
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.30 E-value=0.012 Score=45.83 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
+...|+|+|.+|+||||+...|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999864
No 364
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.30 E-value=0.011 Score=44.83 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.1
Q ss_pred cEEEEEccCCCcHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLA 114 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA 114 (215)
..|+|+|.+|+||||+...|.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 365
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.30 E-value=0.01 Score=45.27 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|.+|+||||+...|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999999764
No 366
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.29 E-value=0.011 Score=44.97 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
...|+|+|.+|+||||+...|..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 35799999999999999999864
No 367
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.25 E-value=0.011 Score=45.44 Aligned_cols=26 Identities=23% Similarity=0.150 Sum_probs=22.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
.+...|+|+|.+|+||||+...|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Confidence 35578999999999999999999763
No 368
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.25 E-value=0.012 Score=44.88 Aligned_cols=24 Identities=21% Similarity=0.087 Sum_probs=21.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
...|+|+|.+|+||||+...|...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999753
No 369
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.20 E-value=0.013 Score=51.67 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..|.|+|++|+||||+...|+..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999998765
No 370
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.19 E-value=0.013 Score=44.05 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
...|+|+|.+|+||||+...|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 45799999999999999999976
No 371
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.19 E-value=0.013 Score=52.11 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=28.8
Q ss_pred HhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 85 ~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
..+++--++.++.|+|++||||||+.+.|+..+.
T Consensus 63 d~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 63 DGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3444445999999999999999999999999874
No 372
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.19 E-value=0.013 Score=45.22 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
...|+|+|.+|+||||+...|...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999764
No 373
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.17 E-value=0.013 Score=45.09 Aligned_cols=23 Identities=17% Similarity=0.029 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
...|+|+|.+|+||||+...|..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999976
No 374
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.15 E-value=0.0077 Score=56.47 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..|.|+|++||||||+.+.|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 67789999999999999999998766
No 375
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.15 E-value=0.013 Score=45.29 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=21.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
....|+|+|.+|+||||+...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4468999999999999999998654
No 376
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.14 E-value=0.014 Score=44.43 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=21.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
...|+|+|.+|+||||+...|...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999764
No 377
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.12 E-value=0.013 Score=45.28 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=22.7
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
.+..+|+|+|.+|+||||+...|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999854
No 378
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.11 E-value=0.012 Score=44.79 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
...|+|+|.+|+||||+...|..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999998854
No 379
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.10 E-value=0.016 Score=53.19 Aligned_cols=34 Identities=21% Similarity=0.088 Sum_probs=28.8
Q ss_pred HhHhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 85 ~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
..+++--++..+.|+|++||||||+.+.|+..+.
T Consensus 149 d~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 149 NALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp HHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3444445899999999999999999999999874
No 380
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.08 E-value=0.014 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
..|+|+|.+|+||||+...|...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999764
No 381
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.08 E-value=0.016 Score=43.64 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 028019 95 SVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+|+|+|.+|+||||+...|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 382
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.08 E-value=0.014 Score=51.49 Aligned_cols=25 Identities=20% Similarity=0.005 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++..+.|+|+||||||+++..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678889999999999999999986
No 383
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.07 E-value=0.015 Score=45.94 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
+...|+|+|.+|+||||+.+.+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999986
No 384
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.07 E-value=0.015 Score=53.05 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..++|.|+||+||||++..+|...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 77899999999999999999998754
No 385
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.06 E-value=0.012 Score=45.46 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=21.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
..+|+|+|.+|+|||||.+.|....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4579999999999999999887654
No 386
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.04 E-value=0.01 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+.++|+|+.||||||+.+.|...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 57889999999999999999864
No 387
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.04 E-value=0.013 Score=55.06 Aligned_cols=26 Identities=38% Similarity=0.368 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999998754
No 388
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.03 E-value=0.015 Score=44.18 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.7
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
++...|+|+|.+|+||||+...|..
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHc
Confidence 3456899999999999999999975
No 389
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.03 E-value=0.01 Score=54.28 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=21.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
.+..+.|+|++||||||+.+.|+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 455899999999999999999986
No 390
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.03 E-value=0.015 Score=44.51 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
+...|+|+|.+|+||||+...|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 346799999999999999999874
No 391
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.03 E-value=0.014 Score=49.18 Aligned_cols=25 Identities=32% Similarity=0.161 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|.|+|++|+||||+...|...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999643
No 392
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.02 E-value=0.014 Score=45.81 Aligned_cols=26 Identities=23% Similarity=0.150 Sum_probs=22.4
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
.+...|+|+|.+|+|||||...|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 45578999999999999999998753
No 393
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.02 E-value=0.0088 Score=56.57 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 78899999999999999999997754
No 394
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.01 E-value=0.015 Score=45.22 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
....|+|+|.+|+||||+...|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999864
No 395
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.00 E-value=0.015 Score=53.50 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=28.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----Cceeecchh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL 127 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~l 127 (215)
++..|.++|++|+||||++..||..+. ..+++.|..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 466889999999999999999998872 335677743
No 396
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.98 E-value=0.016 Score=53.93 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=24.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.++..+.|+|++||||||+++.++..+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 378899999999999999999998765
No 397
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.98 E-value=0.016 Score=44.70 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=21.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
...|+|+|.+|+||||+...|...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999754
No 398
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.98 E-value=0.014 Score=54.81 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=27.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh---CCc--eeecchh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSL 127 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D~l 127 (215)
+..|.|+|++|+||||++..||..+ |.. +++.|..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 4579999999999999999999766 443 5777653
No 399
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.98 E-value=0.012 Score=55.53 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999998754
No 400
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.97 E-value=0.011 Score=55.74 Aligned_cols=26 Identities=31% Similarity=0.301 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 66788999999999999999997644
No 401
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.97 E-value=0.011 Score=45.47 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA 114 (215)
+...|+|+|.+|+||||+...|.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 46789999999999999998885
No 402
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.95 E-value=0.017 Score=44.26 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=21.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
....|+|+|.+|+||||+...|...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999998753
No 403
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.94 E-value=0.015 Score=44.83 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
..|+|+|.+|+||||+...|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999865
No 404
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.93 E-value=0.02 Score=43.87 Aligned_cols=25 Identities=20% Similarity=-0.019 Sum_probs=21.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|.+|+||||+...+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998753
No 405
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.93 E-value=0.018 Score=54.76 Aligned_cols=35 Identities=20% Similarity=0.078 Sum_probs=27.8
Q ss_pred HHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 83 ~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+...+...+.+..++|.|+||+||||+...+...+
T Consensus 154 Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp HHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 44455555788999999999999999988877655
No 406
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.93 E-value=0.01 Score=56.27 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 78899999999999999999997654
No 407
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.015 Score=55.75 Aligned_cols=26 Identities=35% Similarity=0.276 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 68899999999999999999998754
No 408
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.90 E-value=0.018 Score=44.24 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
...|+|+|.+|+||||+...|..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 45799999999999999999875
No 409
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.90 E-value=0.016 Score=44.85 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.6
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
-+...|+++|.+|+||||+...|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999999864
No 410
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.87 E-value=0.018 Score=44.03 Aligned_cols=24 Identities=33% Similarity=0.241 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
...|+|+|.+|+||||+...|...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999999764
No 411
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=94.87 E-value=0.0065 Score=54.17 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=21.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
++..|.|-|+-||||||+++.|++.|+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346788999999999999999999875
No 412
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.87 E-value=0.018 Score=45.02 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=21.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
...|+|+|.+|+|||||...|...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999999763
No 413
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.86 E-value=0.014 Score=47.98 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
...+|+|+|.+|+||||+...|..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 457899999999999999998864
No 414
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.86 E-value=0.0087 Score=63.55 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=28.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc-----eeecch
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY-----YFDSDS 126 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~-----~ld~D~ 126 (215)
+++.+.|+|+||||||++|+.++.+-... |++.+.
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~ 1120 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1120 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEccc
Confidence 67779999999999999999998755333 777654
No 415
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.84 E-value=0.013 Score=55.99 Aligned_cols=26 Identities=42% Similarity=0.383 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 67889999999999999999997644
No 416
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.84 E-value=0.016 Score=55.46 Aligned_cols=26 Identities=38% Similarity=0.368 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+-.+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999998754
No 417
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.82 E-value=0.02 Score=45.06 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=22.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|.+|+||||+...|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999764
No 418
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.82 E-value=0.014 Score=53.71 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.3
Q ss_pred CCcE--EEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTS--VFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~--I~LiG~pGSGKSTlAk~LA~~ 116 (215)
++.. +.|+|++|||||||.+.|+..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 6666 899999999999999999754
No 419
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.81 E-value=0.017 Score=45.46 Aligned_cols=28 Identities=18% Similarity=-0.032 Sum_probs=23.2
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 89 ~~l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
...+...|+|+|.+|+||||+...+...
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456678999999999999999877653
No 420
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.81 E-value=0.019 Score=45.68 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=21.9
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
.+...|+|+|.+|+||||+.+.|..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999864
No 421
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.81 E-value=0.02 Score=44.63 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
....|+|+|.+|+||||+...|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 456899999999999999999976
No 422
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.75 E-value=0.02 Score=44.52 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
.+|+|+|.+|+||||+...|...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999999763
No 423
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=94.75 E-value=0.0087 Score=54.34 Aligned_cols=28 Identities=18% Similarity=0.066 Sum_probs=22.7
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg 118 (215)
.++..|+|-|+-||||||+++.|++.|+
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4667789999999999999999999875
No 424
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.73 E-value=0.014 Score=55.63 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=26.6
Q ss_pred HHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 83 ~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+..++...+.-+.|.|+|++||||||+.+.|+..
T Consensus 35 ~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 35 RALGVEQDLALPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp HHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred HhCCCCCcccCCeEEEECCCCChHHHHHHHHhCC
Confidence 4444444566667999999999999999999753
No 425
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.72 E-value=0.0089 Score=56.41 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 78899999999999999999997654
No 426
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.72 E-value=0.021 Score=52.06 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=22.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
..++|.|++||||||++..+++.+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 389999999999999999999887
No 427
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.72 E-value=0.019 Score=44.90 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=21.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|.+|+||||+...|...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998653
No 428
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.71 E-value=0.021 Score=43.94 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
+...|+|+|.+|+||||+...|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346799999999999999999874
No 429
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.70 E-value=0.018 Score=45.61 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+..+|+|+|.+|+||||+...|...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 5578999999999999999999864
No 430
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.69 E-value=0.021 Score=45.40 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|.+|+||||+...|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999764
No 431
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.69 E-value=0.022 Score=44.56 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=22.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
..+|+|+|.+|+|||||...|....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4579999999999999999998754
No 432
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.68 E-value=0.021 Score=44.89 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=21.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|.+|+||||+...|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999764
No 433
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.66 E-value=0.021 Score=45.05 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=21.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|.+|+||||+...|...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4578999999999999999999753
No 434
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.65 E-value=0.015 Score=44.69 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=22.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|.+|+||||+...+...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999864
No 435
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.64 E-value=0.02 Score=47.50 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
.+...|+|+|.+|+||||+...|..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999864
No 436
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.63 E-value=0.022 Score=44.39 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
..|+|+|.+|+||||+...|...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999764
No 437
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.63 E-value=0.017 Score=45.04 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=21.6
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHH
Q 028019 90 ELKGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 90 ~l~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
......|+|+|.+|+|||||...|..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 34667899999999999999998854
No 438
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.62 E-value=0.022 Score=44.08 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
.+...|+|+|.+|+||||+...|...
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 35578999999999999999999764
No 439
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.61 E-value=0.022 Score=44.34 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
+...|+|+|.+|+||||+...|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 567899999999999999999974
No 440
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.61 E-value=0.02 Score=44.68 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
+...|+|+|.+|+||||+...|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 456899999999999999999875
No 441
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.59 E-value=0.012 Score=55.76 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..+.|+|++||||||+.+.|+..+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 78899999999999999999997654
No 442
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.023 Score=44.66 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=21.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+..+|+|+|.+|+||||+...|...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3467999999999999999999764
No 443
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.57 E-value=0.02 Score=44.93 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=21.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
.+...|+|+|.+|+||||+...|...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 34568999999999999999988763
No 444
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.56 E-value=0.021 Score=52.91 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
..+.|.|+|++|.||||+|+.++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 357889999999999999999864
No 445
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.54 E-value=0.032 Score=53.02 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=26.4
Q ss_pred HHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 83 ~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+.+.+...+.....+|.|+||+|||++...+...+
T Consensus 185 Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 185 QVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp HHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34445555566788899999999999888777654
No 446
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.54 E-value=0.023 Score=45.29 Aligned_cols=25 Identities=20% Similarity=0.021 Sum_probs=21.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
.+..+|+|+|.+|+||||+...+..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 4667899999999999999998875
No 447
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.54 E-value=0.025 Score=50.22 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.....++|+|++||||||+.+.++..+
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 466789999999999999999998754
No 448
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.53 E-value=0.025 Score=51.45 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++..++|.|.||+||||++..+|...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 77899999999999999999998754
No 449
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.021 Score=54.66 Aligned_cols=25 Identities=40% Similarity=0.437 Sum_probs=21.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+..+.|+|++||||||+.+.|+-.+
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Confidence 3678999999999999999998754
No 450
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.51 E-value=0.022 Score=44.25 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|.+|+||||+...|...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999999753
No 451
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.47 E-value=0.055 Score=44.94 Aligned_cols=35 Identities=17% Similarity=0.027 Sum_probs=28.0
Q ss_pred hHhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 028019 86 DISTELKGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (215)
Q Consensus 86 ~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~Lg~~ 120 (215)
.+...+....++|+|++|+|||.++..++..++.+
T Consensus 101 ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~ 135 (237)
T 2fz4_A 101 ALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTP 135 (237)
T ss_dssp HHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSC
T ss_pred HHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 34444566779999999999999999999887644
No 452
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.46 E-value=0.024 Score=44.64 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
..|+|+|.+|+|||||...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998653
No 453
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.45 E-value=0.028 Score=47.21 Aligned_cols=26 Identities=12% Similarity=-0.152 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
++...+++|+|||||||.+-.++.++
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 56788899999999999999998876
No 454
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.44 E-value=0.026 Score=44.18 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=20.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
...|+|+|.+|+||||+...|...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999999753
No 455
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.42 E-value=0.026 Score=44.11 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
...|+|+|.+|+||||+...|...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999753
No 456
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.42 E-value=0.026 Score=44.51 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
....|+|+|.+|+||||+...|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999975
No 457
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.42 E-value=0.026 Score=44.14 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=22.6
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
-+..+|+|+|.+|+||||+...|...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 35578999999999999999999764
No 458
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.41 E-value=0.026 Score=44.61 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
...|+|+|.+|+||||+...|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999975
No 459
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.40 E-value=0.024 Score=44.75 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
+...|+|+|.+|+||||+...|..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998853
No 460
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.38 E-value=0.026 Score=45.36 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
....|+|+|.+|+|||||...|...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999864
No 461
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.36 E-value=0.044 Score=50.47 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=33.3
Q ss_pred hhhHHHHHHhHhhcc-CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 77 SFAVKKKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 77 ~~~~~~~~~~~~~~l-~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
-+..=.|+-++.-.+ ++.++.|+|++|+||||+++.|+...
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 344445666777665 89999999999999999999998865
No 462
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.35 E-value=0.024 Score=52.82 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
....|.|+|+.|.||||+|+.++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 457888999999999999999996
No 463
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.33 E-value=0.035 Score=43.13 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.+...+|+|+.||||||+-..+.-.+
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45578899999999999999987666
No 464
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.29 E-value=0.027 Score=44.19 Aligned_cols=25 Identities=28% Similarity=0.190 Sum_probs=20.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
.+...|+|+|.+|+||||+...|..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3567899999999999999998864
No 465
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.28 E-value=0.035 Score=47.33 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=28.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eeecc
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSD 125 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D 125 (215)
+++.|.++|-.|+||||++..||..| |.+ ++|.|
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 56788888999999999999998877 444 57877
No 466
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.27 E-value=0.029 Score=45.07 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
...|+|+|.+|+||||+...|...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999998763
No 467
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.25 E-value=0.033 Score=49.67 Aligned_cols=35 Identities=20% Similarity=0.049 Sum_probs=28.3
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eeecc
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSD 125 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D 125 (215)
.++..++|.|.||+||||++..+|... |.+ |++++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 478899999999999999999998864 433 56654
No 468
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.24 E-value=0.042 Score=47.86 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
...++|.|++|+||||+++.||+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 5688999999999999999999864
No 469
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.20 E-value=0.03 Score=44.53 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
....|+|+|.+|+||||+...|..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECcCCCCHHHHHHHHhc
Confidence 345899999999999999999976
No 470
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.19 E-value=0.031 Score=52.22 Aligned_cols=24 Identities=29% Similarity=0.088 Sum_probs=22.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
..+.|+|++||||||+.+.|+-.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 678899999999999999999876
No 471
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.17 E-value=0.028 Score=45.61 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
+...|+|+|.+|+||||+...|..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999998854
No 472
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.16 E-value=0.028 Score=45.53 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=26.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh---CCc--eeecch
Q 028019 95 SVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS 126 (215)
Q Consensus 95 ~I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D~ 126 (215)
+|.+.|..|+||||++..||..| |.+ ++|.|-
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46779999999999999999988 433 577774
No 473
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.14 E-value=0.03 Score=44.42 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=20.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
....|+|+|.+|+|||||...|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 346799999999999999999863
No 474
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.14 E-value=0.026 Score=48.93 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=19.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
-.|.|+|++|+||||+.+.|..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4579999999999999999764
No 475
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.14 E-value=0.023 Score=44.29 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+...|+|+|.+|+||||+...|....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999986543
No 476
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.13 E-value=0.029 Score=44.12 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
...|+|+|.+|+||||+...|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999864
No 477
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.12 E-value=0.033 Score=44.14 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
...|+|+|.+|+||||+...|...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999863
No 478
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.11 E-value=0.023 Score=44.18 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA 114 (215)
+...|+++|.+|+||||+...|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999884
No 479
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.11 E-value=0.018 Score=44.44 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=10.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
..|+|+|.+|+||||+...|...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999988643
No 480
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.10 E-value=0.033 Score=43.44 Aligned_cols=24 Identities=25% Similarity=0.058 Sum_probs=21.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
...|+|+|.+|+||||+...|...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
No 481
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.08 E-value=0.024 Score=45.05 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLA 114 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA 114 (215)
...|+|+|.+|+|||||.+.|.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999885
No 482
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.06 E-value=0.036 Score=47.06 Aligned_cols=33 Identities=21% Similarity=-0.095 Sum_probs=26.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh---CCc--eeecch
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS 126 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~L---g~~--~ld~D~ 126 (215)
-+|++.|++|+||||++-.+|..+ |+. +++.|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 458999999999999998888776 555 457764
No 483
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.04 E-value=0.029 Score=56.67 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
++..+.|+|++||||||+.+.|+.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 788999999999999999999984
No 484
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.02 E-value=0.027 Score=47.03 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
+..+|+|+|.+|+||||+...|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999998854
No 485
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.02 E-value=0.033 Score=44.39 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=20.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
..|+|+|.+|+|||||...|..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 5799999999999999998864
No 486
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.01 E-value=0.035 Score=44.12 Aligned_cols=23 Identities=22% Similarity=0.080 Sum_probs=20.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 028019 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 93 ~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
...|+|+|.+|+||||+...|..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 35799999999999999999965
No 487
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.94 E-value=0.039 Score=50.64 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=27.9
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh---CC--ceeecc
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSD 125 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~L---g~--~~ld~D 125 (215)
.++..++|.|.||+||||++..+|... |. .|+++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 377899999999999999999998865 33 355554
No 488
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.91 E-value=0.038 Score=43.86 Aligned_cols=25 Identities=20% Similarity=-0.001 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|.+|+||||+...|...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999753
No 489
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.91 E-value=0.037 Score=43.65 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=20.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+...|+|+|.+|+||||+.+.+...
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 5678999999999999999877653
No 490
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.88 E-value=0.051 Score=53.58 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=26.7
Q ss_pred HHHhHhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 83 ~~~~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+.+.+...+.....+|.|+||+|||++...+...+
T Consensus 361 Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 361 QVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp HHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 44455555667788999999999999888777654
No 491
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.84 E-value=0.036 Score=44.47 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~ 115 (215)
+...|+|+|.+|+||||+...|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456899999999999999999864
No 492
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.78 E-value=0.041 Score=44.32 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=21.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
.+...|+|+|.+|+|||||...|...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 46678999999999999999999763
No 493
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.74 E-value=0.035 Score=59.86 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=30.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC-----Cceeecchh
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL 127 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~LA~~Lg-----~~~ld~D~l 127 (215)
.++..|+|+||||+|||++|..++.+.. ..|++.+..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 3689999999999999999999987653 347887643
No 494
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.70 E-value=0.053 Score=46.17 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=25.8
Q ss_pred HhHhhccCC--cEEEEEccCCCcHHHHHHHHHHH
Q 028019 85 ADISTELKG--TSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 85 ~~~~~~l~~--~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
.++.+.+.. .+++++|.||+||||+...|...
T Consensus 89 ~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 89 VLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp HHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcc
Confidence 345566666 49999999999999999998753
No 495
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.70 E-value=0.044 Score=45.02 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=19.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHH
Q 028019 91 LKGTSVFLVGMNNAIKTHLGKFL 113 (215)
Q Consensus 91 l~~~~I~LiG~pGSGKSTlAk~L 113 (215)
..+..++++|++||||||+...+
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHH
Confidence 36889999999999999866544
No 496
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.68 E-value=0.023 Score=45.40 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 028019 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 92 ~~~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
....|+|+|.+|+||||+...|...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4578999999999999999988654
No 497
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.67 E-value=0.048 Score=43.17 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
..|+|+|.+|+|||||...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999853
No 498
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.63 E-value=0.042 Score=46.43 Aligned_cols=23 Identities=39% Similarity=0.388 Sum_probs=20.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 028019 94 TSVFLVGMNNAIKTHLGKFLADA 116 (215)
Q Consensus 94 ~~I~LiG~pGSGKSTlAk~LA~~ 116 (215)
+.|.|+|.+|+||||+-..|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999999643
No 499
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.61 E-value=0.064 Score=51.05 Aligned_cols=35 Identities=11% Similarity=-0.042 Sum_probs=23.9
Q ss_pred HHHhHhhcc-CCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 83 KAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 83 ~~~~~~~~l-~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
+.+.|...| .....+|.||||+|||++.-.+...+
T Consensus 194 Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 194 QKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp HHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 455666666 34567788999999997655554433
No 500
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.58 E-value=0.053 Score=50.59 Aligned_cols=32 Identities=25% Similarity=0.175 Sum_probs=27.0
Q ss_pred hHhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 028019 86 DISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (215)
Q Consensus 86 ~~~~~l~~~~I~LiG~pGSGKSTlAk~LA~~L 117 (215)
.+.+..++.++.|.|++|+||||++..|+...
T Consensus 144 ~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 144 LLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHSCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHhhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 34444699999999999999999999997754
Done!