BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028022
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CWX|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CWX|E Chain E, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CXE|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|B Chain B, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|C Chain C, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|D Chain D, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2D69|A Chain A, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|B Chain B, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|D Chain D, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|E Chain E, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
Length = 430
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 47 YESQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPN 106
YE KR N FL H P+ G H + + FGK V +G GHP+
Sbjct: 323 YEEIKRI--NDFLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPD 380
Query: 107 PPAPCACPLKQAWGSLDALI 126
P A L+ A +DA I
Sbjct: 381 GPRAGAKALRDA---IDAAI 397
>pdb|3BIY|A Chain A, Crystal Structure Of P300 Histone Acetyltransferase Domain
In Complex With A Bisubstrate Inhibitor, Lys-Coa
Length = 380
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 51 KRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCP------YFGH 104
+RR + ++L + +P +I +L+Y+ + G T HI CP Y H
Sbjct: 104 QRRVYISYLDSVHFFRPKCLRTAVYHEILIGYLEYVKKLGYTTGHIWACPPSEGDDYIFH 163
Query: 105 PNPP 108
+PP
Sbjct: 164 CHPP 167
>pdb|3RNL|A Chain A, Crystal Structure Of Sulfotransferase From
Alicyclobacillus Acidocaldarius
Length = 311
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 62 LKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHI 96
++ H PL R G + + +YLD FG+ +V +
Sbjct: 151 IRQHYEPLWYYRAVGLYAAQVKRYLDVFGREQVKV 185
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 69 LTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCAC 113
L LA+ GA ++ + +G +VH Y+GH NP P AC
Sbjct: 126 LGLAKRVGARLL-LASTSEVYGDPEVHPQSEDYWGHVNPIGPRAC 169
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 69 LTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCAC 113
L LA+ GA ++ + +G +VH Y+GH NP P AC
Sbjct: 104 LGLAKRVGARLL-LASTSEVYGDPEVHPQSEDYWGHVNPIGPRAC 147
>pdb|2QYG|A Chain A, Crystal Structure Of A Rubisco-Like Protein Rlp2 From
Rhodopseudomonas Palustris
pdb|2QYG|B Chain B, Crystal Structure Of A Rubisco-Like Protein Rlp2 From
Rhodopseudomonas Palustris
pdb|2QYG|C Chain C, Crystal Structure Of A Rubisco-Like Protein Rlp2 From
Rhodopseudomonas Palustris
pdb|2QYG|D Chain D, Crystal Structure Of A Rubisco-Like Protein Rlp2 From
Rhodopseudomonas Palustris
Length = 452
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 102 FGHPNPPAPCACPLKQAWGSLDALI 126
FGHP PA A ++QAW ++ A I
Sbjct: 406 FGHPMGPAAGATSIRQAWDAIAAGI 430
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,965,592
Number of Sequences: 62578
Number of extensions: 190342
Number of successful extensions: 363
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 6
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)