BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028022
(215 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P21052|F11_VACCC Protein F11 OS=Vaccinia virus (strain Copenhagen) GN=F11L PE=3 SV=1
Length = 354
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 30 APESSTSPPAAAAPPSRYESQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQF 89
PE S++ A A +R S+KR+D + L H+ L LA + + EFL Y + +
Sbjct: 214 IPEISSNDNAKIA--ARILSEKRKDTIAHIDTLIQHRQQLELAYYNSCMLTEFLHYCNSY 271
Query: 90 GKT 92
T
Sbjct: 272 ADT 274
>sp|Q9UL01|DSE_HUMAN Dermatan-sulfate epimerase OS=Homo sapiens GN=DSE PE=1 SV=1
Length = 958
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 17 AAAAAALQQQLQQAPESSTSPPAAAAPPSRYESQKRRDWNTFLQYLKNHKPPLTLARCSG 76
A A L L + + A A YE+ RR W QYL NH+P +A +G
Sbjct: 159 ATAYDFLYNYLSKTQQEKFLEVIANASGYMYETSYRRGWG--FQYLHNHQPTNCMALLTG 216
Query: 77 AHVIEFLKYLDQ 88
+ V+ YL +
Sbjct: 217 SLVLMNQGYLQE 228
>sp|Q8BLI4|DSE_MOUSE Dermatan-sulfate epimerase OS=Mus musculus GN=Dse PE=2 SV=1
Length = 958
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 17 AAAAAALQQQLQQAPESSTSPPAAAAPPSRYESQKRRDWNTFLQYLKNHKPPLTLARCSG 76
A A L L + + + A A YE+ RR W QYL NH+P +A +G
Sbjct: 159 ATAYDFLYNYLSKTQQETFLEVIANASGYMYETSYRRGWG--FQYLHNHQPTNCMALLTG 216
Query: 77 AHVIEFLKYLDQ 88
+ ++ YL +
Sbjct: 217 SLILMNQGYLQE 228
>sp|P0C2H4|DSE_BOVIN Dermatan-sulfate epimerase OS=Bos taurus GN=DSE PE=1 SV=1
Length = 958
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 17 AAAAAALQQQLQQAPESSTSPPAAAAPPSRYESQKRRDWNTFLQYLKNHKPPLTLARCSG 76
A A L L + + A A YE+ RR W QYL NH+P +A +G
Sbjct: 159 ATAYDFLYNYLSKTQQEKFLEVIANASGYMYETSYRRGWG--FQYLHNHQPTNCMALLTG 216
Query: 77 AHVIEFLKYLDQ 88
+ V+ YL +
Sbjct: 217 SLVLMNQGYLQE 228
>sp|P29888|F11_VACCP Protein F11 OS=Vaccinia virus (strain L-IVP) GN=F7 PE=3 SV=1
Length = 337
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 30 APESSTSPPAAAAPPSRYESQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQF 89
PE S++ A A +R S+KR+D + L H+ L LA + + EFL Y + +
Sbjct: 210 IPEISSNDNAKIA--ARILSEKRKDTIAHIDTLIQHRQQLELAYYNSCMLTEFLHYCNSY 267
Query: 90 GKT 92
T
Sbjct: 268 AGT 270
>sp|Q7ZAM3|XERD_OCEIH Tyrosine recombinase XerD OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=xerD PE=3
SV=1
Length = 297
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 49 SQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKV----HISGCPYF 102
S +RD +LQY+K+H T + S ++ FL L GK+ HIS F
Sbjct: 25 SSYKRDLTNYLQYMKDHDKTATWDKISRTDIMGFLYMLKDQGKSTATISRHISSIRSF 82
>sp|Q5N7W3|RPN2_ORYSJ Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit 2 OS=Oryza sativa subsp. japonica GN=RPN2 PE=2
SV=1
Length = 698
Score = 30.4 bits (67), Expect = 9.5, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 2 DSEPNTGEGSSSSSTAAAAAALQQQLQQAPESSTSPPAAAAPPSRYESQKRRDWNTFLQY 61
D E G+ + +S A ++ L +APE + PPA A P K+ + F
Sbjct: 534 DLELAVGDAAMENSFLRALGHIELDLPEAPEKAPKPPAQAVDPFSKFGPKKEISHIFRSP 593
Query: 62 LKNHKPPLTLARC-SGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCA 112
K +PP L+ +G ++ + +L + V++ P+ PAP A
Sbjct: 594 EK--RPPKELSFAFTGLTLLPIVGFLIGLMRLGVNLK-----NFPSLPAPAA 638
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,488,624
Number of Sequences: 539616
Number of extensions: 3601955
Number of successful extensions: 22655
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 19819
Number of HSP's gapped (non-prelim): 2574
length of query: 215
length of database: 191,569,459
effective HSP length: 113
effective length of query: 102
effective length of database: 130,592,851
effective search space: 13320470802
effective search space used: 13320470802
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)