Query 028022
Match_columns 215
No_of_seqs 76 out of 78
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 07:40:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xo0_A Recombinase CRE; CRE re 92.0 0.35 1.2E-05 37.2 6.1 71 49-147 24-95 (324)
2 3nrw_A Phage integrase/site-sp 85.1 3 0.0001 28.9 6.5 69 51-146 32-102 (117)
3 1a0p_A Site-specific recombina 83.4 2.9 9.9E-05 31.6 6.2 70 49-146 25-96 (290)
4 2oxo_A Integrase; DNA-binding 76.3 7.1 0.00024 24.5 5.4 63 52-146 28-93 (103)
5 2khq_A Integrase; all-alpha, s 75.2 6.7 0.00023 25.8 5.3 62 53-146 30-94 (110)
6 2kkv_A Integrase; protein stru 70.3 19 0.00065 24.4 6.8 61 58-146 35-98 (121)
7 2kkp_A Phage integrase; SAM-li 69.0 6.9 0.00024 25.9 4.2 53 68-146 47-101 (117)
8 2kiw_A INT protein; alpha, str 67.7 23 0.00079 23.3 6.8 50 69-146 39-91 (111)
9 2ols_A Phosphoenolpyruvate syn 67.1 4.9 0.00017 38.8 4.3 39 126-164 561-629 (794)
10 2kj8_A Putative prophage CPS-5 66.5 18 0.00063 24.5 6.1 51 69-146 45-97 (118)
11 2kd1_A DNA integration/recombi 65.9 14 0.00047 24.7 5.3 52 68-146 45-99 (118)
12 2key_A Putative phage integras 65.3 4 0.00014 27.2 2.5 51 69-146 47-101 (112)
13 2eqe_A Tumor necrosis factor, 64.5 3 0.0001 28.8 1.7 26 87-112 11-36 (48)
14 1z19_A Integrase; protein-DNA 63.0 12 0.00039 28.3 4.9 65 51-146 27-93 (283)
15 2x0s_A Pyruvate phosphate diki 62.9 8.6 0.00029 38.0 5.2 24 141-164 683-709 (913)
16 2xz9_A Phosphoenolpyruvate-pro 61.2 13 0.00046 32.2 5.6 34 123-156 62-117 (324)
17 2zxj_A Transcriptional regulat 59.1 4.3 0.00015 30.4 1.9 21 121-141 76-96 (120)
18 3zq7_A KDP operon transcriptio 55.5 6 0.0002 27.4 2.0 21 120-140 67-87 (102)
19 2z9m_A Response regulator YYCF 52.3 6.7 0.00023 28.3 1.9 20 120-139 75-94 (120)
20 1tac_A TAT protein; transcript 51.9 10 0.00035 28.8 2.9 15 161-175 39-53 (86)
21 1vbg_A Pyruvate,orthophosphate 49.8 14 0.00049 36.5 4.3 26 140-165 662-690 (876)
22 2wqd_A Phosphoenolpyruvate-pro 48.1 23 0.0008 33.3 5.3 43 122-164 312-378 (572)
23 2hwg_A Phosphoenolpyruvate-pro 45.6 21 0.00072 33.6 4.6 34 122-155 310-365 (575)
24 1kbl_A PPDK, pyruvate phosphat 43.5 17 0.0006 35.9 3.8 26 140-165 655-683 (873)
25 3rjp_A COVR; winged helix-turn 43.2 12 0.00041 25.6 1.9 18 120-137 61-78 (96)
26 3mi9_C Protein TAT; P-TEFB, HI 43.0 6.2 0.00021 30.0 0.5 16 160-175 38-53 (86)
27 2khv_A Phage integrase; soluti 41.9 52 0.0018 21.9 5.0 51 67-146 40-94 (106)
28 2kj5_A Phage integrase; GFT PS 41.9 33 0.0011 22.7 4.0 49 70-146 47-98 (116)
29 1h6z_A Pyruvate phosphate diki 41.6 22 0.00076 35.6 4.3 37 121-164 670-709 (913)
30 2kj9_A Integrase; DNA_BRE_C su 40.9 41 0.0014 23.1 4.4 50 69-145 50-101 (118)
31 1z1b_A Integrase; protein-DNA 37.8 47 0.0016 26.2 4.8 62 54-146 103-166 (356)
32 2k4j_A Putative transcriptiona 37.2 25 0.00087 25.4 3.0 20 120-139 80-99 (115)
33 2a25_A Ubiquitin ligase SIAH1; 36.4 7.5 0.00026 31.2 0.0 34 91-131 24-61 (193)
34 2hqn_A Putative transcriptiona 34.3 18 0.00063 25.2 1.8 19 120-138 68-86 (109)
35 1opc_A OMPR, OMPRC; transcript 33.8 17 0.00058 25.4 1.6 20 120-139 70-89 (110)
36 3lys_A Prophage PI2 protein 01 33.1 1.1E+02 0.0037 20.4 6.7 61 55-146 36-98 (112)
37 2pjp_A Selenocysteine-specific 32.4 19 0.00064 26.2 1.6 38 55-93 68-111 (121)
38 3qfs_A CPR, P450R, NADPH--cyto 32.0 31 0.0011 31.1 3.3 46 75-120 108-153 (458)
39 1gxq_A PHOB, phosphate regulon 31.6 25 0.00085 24.5 2.1 19 120-138 70-88 (106)
40 2dkz_A Hypothetical protein LO 30.5 25 0.00086 26.4 2.0 21 66-86 10-30 (84)
41 2kzy_A ZNF216-A20, zfand5 prot 29.1 24 0.00082 25.2 1.6 20 93-112 14-33 (62)
42 2hwv_A DNA-binding response re 27.6 26 0.0009 25.5 1.7 20 120-139 82-101 (121)
43 1h1j_S THO1 protein; SAP domai 27.2 44 0.0015 22.5 2.6 26 119-144 25-50 (51)
44 4a8e_A XER A, probable tyrosin 27.1 81 0.0028 23.8 4.4 51 52-137 34-84 (292)
45 3qe2_A CPR, P450R, NADPH--cyto 27.1 42 0.0014 31.1 3.3 46 75-120 268-313 (618)
46 3tfg_A ALR2278 protein; heme-b 26.0 21 0.00073 28.2 1.0 37 52-88 64-103 (189)
47 2pk2_A Cyclin-T1, protein TAT; 25.6 15 0.0005 32.0 0.0 21 140-169 312-332 (358)
48 2kob_A Uncharacterized protein 24.9 1.4E+02 0.0048 19.1 5.3 29 118-146 62-92 (108)
49 3q9v_A DNA-binding response re 24.6 51 0.0017 24.6 2.8 19 120-138 99-117 (133)
50 2c7n_A Rabex-5, GEF 1, RAB gua 24.1 24 0.00081 26.2 0.9 23 95-117 19-41 (74)
51 2l4d_A SCO1/SENC family protei 24.1 32 0.0011 23.0 1.5 25 64-88 74-98 (110)
52 2e1f_A Werner syndrome ATP-dep 23.2 62 0.0021 23.8 3.0 23 147-169 14-36 (103)
53 2pk2_A Cyclin-T1, protein TAT; 22.7 14 0.00048 32.1 -0.7 7 45-51 124-130 (358)
54 1t4w_A CEP-1, C.elegans P53 tu 22.3 37 0.0013 28.8 1.8 14 51-64 181-194 (196)
55 2ecb_A Zinc fingers and homeob 21.2 1.2E+02 0.0042 21.8 4.2 22 126-154 23-44 (89)
56 1v5r_A Growth-arrest-specific 21.1 13 0.00045 28.6 -1.0 14 54-67 63-76 (97)
57 1am7_A Lysozyme; glycosidase, 21.1 57 0.0019 26.3 2.6 17 123-139 136-152 (158)
58 3a2a_A Voltage-gated hydrogen 20.9 53 0.0018 23.4 2.1 22 122-143 37-58 (58)
59 2jrb_A ORF 1 protein; RNA bind 20.2 44 0.0015 25.1 1.7 23 44-66 16-38 (88)
No 1
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=91.97 E-value=0.35 Score=37.19 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=52.8
Q ss_pred HhhhhhHHHHHHHHHhcCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHH
Q 028022 49 SQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGR 128 (215)
Q Consensus 49 sQKRRdWntF~qyL~n~rPPlsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGR 128 (215)
..-+++|+.|..|+..+. +.+...+..||.+|+.++-..| .+..++...+..
T Consensus 24 ~~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~ 75 (324)
T 1xo0_A 24 KMLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQ 75 (324)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHH
Confidence 344678999999998763 2456678999999999875322 245688999999
Q ss_pred HHHHHHHhCCC-CCCCccch
Q 028022 129 LRAAYEENGGR-PESNPFGA 147 (215)
Q Consensus 129 LRAAfEE~Gg~-pE~NPF~a 147 (215)
|++.|+-.+.. +..||+..
T Consensus 76 l~~~~~~~~~~~~~~np~~~ 95 (324)
T 1xo0_A 76 LNMLHRRSGLPRPSDSNAVS 95 (324)
T ss_dssp HHHHHHHHTSCCGGGSHHHH
T ss_pred HHHHHHHcCCCCCCcCHHHH
Confidence 99999988643 35688754
No 2
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=85.11 E-value=3 Score=28.91 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=48.2
Q ss_pred hhhhHHHHHHHHHhcCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 028022 51 KRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLR 130 (215)
Q Consensus 51 KRRdWntF~qyL~n~rPPlsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLR 130 (215)
-+++++.|..||.... -..+...+..||.+|+.|+-..| .+..|+-..+.-||
T Consensus 32 Y~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~~--------------------------~s~~Ti~~~ls~lr 84 (117)
T 3nrw_A 32 FRYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGSD--------------------------VSPATLNGEMQTLK 84 (117)
T ss_dssp HHHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTSS--------------------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHH
Confidence 3578889999997642 12566778999999999874311 24567888888888
Q ss_pred HHHHHh--CCCCCCCccc
Q 028022 131 AAYEEN--GGRPESNPFG 146 (215)
Q Consensus 131 AAfEE~--Gg~pE~NPF~ 146 (215)
..|.-. -|--+.||+.
T Consensus 85 ~f~~~l~~~g~i~~nP~~ 102 (117)
T 3nrw_A 85 NWLEYLARIDVVDEDLPE 102 (117)
T ss_dssp HHHHHHHHTTSSCTTSGG
T ss_pred HHHHHHHHcCCcccCHHH
Confidence 888743 2445688875
No 3
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=83.37 E-value=2.9 Score=31.61 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=48.2
Q ss_pred HhhhhhHHHHHHHHHhcCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHH
Q 028022 49 SQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGR 128 (215)
Q Consensus 49 sQKRRdWntF~qyL~n~rPPlsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGR 128 (215)
..-++.++.|..||... .+.+...+..||.+|+.++-.. ..+..++...+.-
T Consensus 25 ~~y~~~l~~~~~~~~~~--~~~~~~i~~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~ 76 (290)
T 1a0p_A 25 NAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG--------------------------GYKATSSARLLSA 76 (290)
T ss_dssp HHHHHHHHHHHHHHHHT--SCCTTTCCHHHHHHHHHSCC---------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--CCChhhCCHHHHHHHHHHHHhc--------------------------CCCHHHHHHHHHH
Confidence 34457788899999887 3467778899999999876421 1245678888999
Q ss_pred HHHHHHHhC--CCCCCCccc
Q 028022 129 LRAAYEENG--GRPESNPFG 146 (215)
Q Consensus 129 LRAAfEE~G--g~pE~NPF~ 146 (215)
|+++|+..- +..+.|||.
T Consensus 77 l~~~~~~~~~~~~i~~np~~ 96 (290)
T 1a0p_A 77 VRRLFQYLYREKFREDDPSA 96 (290)
T ss_dssp HHHHHHHHHHTTSSSSCTTS
T ss_pred HHHHHHHHHhCCCccCChhh
Confidence 999987542 345678985
No 4
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=76.27 E-value=7.1 Score=24.52 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHhcCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 028022 52 RRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRA 131 (215)
Q Consensus 52 RRdWntF~qyL~n~rPPlsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRA 131 (215)
++.++.|..|+.+ +.|..-+..||.+|+.++...| +..++...+..||+
T Consensus 28 ~~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~ 76 (103)
T 2oxo_A 28 MSKIKAIRRGLPD----APLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSD 76 (103)
T ss_dssp HHHHHHHHHHSCS----CBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc----CchhhCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHH
Confidence 3445556666643 4567778999999998774211 23578889999999
Q ss_pred HHHH---hCCCCCCCccc
Q 028022 132 AYEE---NGGRPESNPFG 146 (215)
Q Consensus 132 AfEE---~Gg~pE~NPF~ 146 (215)
+|+- .|. -+.|||.
T Consensus 77 ~~~~a~~~~~-i~~nP~~ 93 (103)
T 2oxo_A 77 AFREAIAEGH-ITTNHVA 93 (103)
T ss_dssp HHHHHHHTTS-CSSCTTC
T ss_pred HHHHHHHcCC-CCCChHh
Confidence 9874 344 4579985
No 5
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=75.18 E-value=6.7 Score=25.79 Aligned_cols=62 Identities=15% Similarity=0.248 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhcCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHH
Q 028022 53 RDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAA 132 (215)
Q Consensus 53 RdWntF~qyL~n~rPPlsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAA 132 (215)
+.++.|..|+.+ +.|..-+..||.+|+.++.+ ..+..++..++..||++
T Consensus 30 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~l~~~ 78 (110)
T 2khq_A 30 SAYKHIKDHFRH----KLLKDIKRTEYQKFLNEYGL---------------------------THSYETIRKLNSYIRNA 78 (110)
T ss_dssp HHHHHHHHHCSS----CBGGGCCHHHHHHHHHHHHH---------------------------HSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CCHhhCCHHHHHHHHHHHHH---------------------------HhhHHHHHHHHHHHHHH
Confidence 445557777653 45677789999999987731 12346888999999999
Q ss_pred HHH---hCCCCCCCccc
Q 028022 133 YEE---NGGRPESNPFG 146 (215)
Q Consensus 133 fEE---~Gg~pE~NPF~ 146 (215)
|+- .|. -+.||+.
T Consensus 79 ~~~a~~~~~-i~~NP~~ 94 (110)
T 2khq_A 79 FDDAIHEGY-VIKNPTY 94 (110)
T ss_dssp HHHHHHTTC-CCCCGGG
T ss_pred HHHHHHCCC-cccCccc
Confidence 974 343 4689984
No 6
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=70.29 E-value=19 Score=24.36 Aligned_cols=61 Identities=21% Similarity=0.234 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH--
Q 028022 58 FLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEE-- 135 (215)
Q Consensus 58 F~qyL~n~rPPlsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAAfEE-- 135 (215)
|..||.....-+.|..-+..||.+||..+...| +..++..++.-||++|.-
T Consensus 35 l~~~i~~~~g~~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~A~ 87 (121)
T 2kkv_A 35 LELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSG---------------------------KHDVAQRLQQRVTAIMRYAV 87 (121)
T ss_dssp HHHHHSSSSTTSCTTCCCSGGGHHHHHHHHHTT---------------------------THHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCchhcCCCHHHcCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHH
Confidence 333343333335677788899999998664211 345788899999999874
Q ss_pred -hCCCCCCCccc
Q 028022 136 -NGGRPESNPFG 146 (215)
Q Consensus 136 -~Gg~pE~NPF~ 146 (215)
.|. -+.||+.
T Consensus 88 ~~~~-i~~NP~~ 98 (121)
T 2kkv_A 88 QNDY-IDSNPAS 98 (121)
T ss_dssp HTTS-SCSCSCS
T ss_pred HcCC-cccCcHH
Confidence 343 4589974
No 7
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=68.96 E-value=6.9 Score=25.93 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=37.5
Q ss_pred CcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHhC--CCCCCCcc
Q 028022 68 PLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEENG--GRPESNPF 145 (215)
Q Consensus 68 PlsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAAfEE~G--g~pE~NPF 145 (215)
-+.|..-+..||.+|+.++-..| .+..++..++..||++|+-.= |--+.||+
T Consensus 47 ~~~l~~It~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l~~~~~~A~~~~~i~~nP~ 100 (117)
T 2kkp_A 47 SIPLKKLQPADIQRLYASKLESG--------------------------LSPTRVRYIHVVLHEAMSQARESGLLLQNPT 100 (117)
T ss_dssp TSCTTTCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHHHHHHHHHHTTTSCSSCGG
T ss_pred ceEHHHCCHHHHHHHHHHHHHcC--------------------------CCHHHHHHHHHHHHHHHHHHHHCCCcccCcc
Confidence 35677788999999998764211 244688899999999998431 23457998
Q ss_pred c
Q 028022 146 G 146 (215)
Q Consensus 146 ~ 146 (215)
.
T Consensus 101 ~ 101 (117)
T 2kkp_A 101 E 101 (117)
T ss_dssp G
T ss_pred c
Confidence 4
No 8
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=67.75 E-value=23 Score=23.26 Aligned_cols=50 Identities=6% Similarity=0.084 Sum_probs=36.4
Q ss_pred cccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCcc
Q 028022 69 LTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEE---NGGRPESNPF 145 (215)
Q Consensus 69 lsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAAfEE---~Gg~pE~NPF 145 (215)
+.|..-+..||.+|+.++.+ ..+..++..++..||++|.- .|. -+.||+
T Consensus 39 ~~l~~It~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~lr~~~~~A~~~~~-i~~nP~ 90 (111)
T 2kiw_A 39 KPIQTIKKHDYQRFVDDISA---------------------------QYSKNYVDSIVASTNMIFKYAYDTRL-IKAMPS 90 (111)
T ss_dssp SCGGGCCHHHHHHHHHHHHT---------------------------TSCHHHHHHHHHHHHHHHHHHHHTTS-CSCCTT
T ss_pred CcHHHcCHHHHHHHHHHHHh---------------------------hhCHHHHHHHHHHHHHHHHHHHHhCC-hhhCcc
Confidence 45667789999999987741 12346788899999999874 343 468998
Q ss_pred c
Q 028022 146 G 146 (215)
Q Consensus 146 ~ 146 (215)
.
T Consensus 91 ~ 91 (111)
T 2kiw_A 91 E 91 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 9
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=67.05 E-value=4.9 Score=38.84 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCC-------------------------CCCcc-chhHHHHHHH----HHHHHHHhh
Q 028022 126 IGRLRAAYEENGGRP-------------------------ESNPF-GARAVRIYLR----EVRESQAKA 164 (215)
Q Consensus 126 IGRLRAAfEE~Gg~p-------------------------E~NPF-~araVRlYLR----eVRd~QAKA 164 (215)
..-++.+++.++++| |.||| +.|.+|+||. |+=+.|.+|
T Consensus 561 ~~~~~~~~~~~~~~pv~iR~~D~~~~~~~~~~gg~~~~~~E~NP~lG~Rg~r~~~~~p~~~~~~~ql~A 629 (794)
T 2ols_A 561 AEGVATLAASVYPRKTIVRMSDFKSNEYANLVGGNVYEPHEENPMLGFRGAARYVADNFKDCFALECKA 629 (794)
T ss_dssp HHHHHHHHHHHTTSEEEEECCCCCHHHHHTSBTCGGGSCCCSCGGGSSCTHHHHHCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCCchhhHHHhcCccccccccCCCcCccceeeeeccchhHHHHHHHHH
Confidence 356677778777664 68997 7899999998 566667655
No 10
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=66.48 E-value=18 Score=24.51 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=35.9
Q ss_pred cccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCccc
Q 028022 69 LTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEEN--GGRPESNPFG 146 (215)
Q Consensus 69 lsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAAfEE~--Gg~pE~NPF~ 146 (215)
+.|..-+..||.+|+..+...| +..++..++.-||++|+-. -|.-+.||+.
T Consensus 45 ~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~Av~~~~i~~NP~~ 97 (118)
T 2kj8_A 45 LEIQDIEPMQLLEVIRRFEDRG---------------------------AMERANKARRRCGEVFRYAIVTGRAKYNPAP 97 (118)
T ss_dssp SBTTSCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHHHTTSCSCCSHH
T ss_pred CcHHHCCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHHHcCCcccCcHH
Confidence 4566778999999998654211 3357888999999999742 2334689974
No 11
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=65.92 E-value=14 Score=24.67 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=37.1
Q ss_pred CcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCc
Q 028022 68 PLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEE---NGGRPESNP 144 (215)
Q Consensus 68 PlsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAAfEE---~Gg~pE~NP 144 (215)
-+.|...+..||.+|+.++-..| .+..++..++..||++|.- .|. -+.||
T Consensus 45 ~~~l~~it~~~i~~~~~~l~~~g--------------------------~s~~t~~~~~~~l~~~~~~a~~~~~-i~~nP 97 (118)
T 2kd1_A 45 NIKLAKLTSLHMQNYVNSLRDEG--------------------------LKRGTIEKIIKVIRNSLEHAIDLEL-ITKNV 97 (118)
T ss_dssp SSBGGGCCHHHHHHHHHHHHHHT--------------------------CCHHHHHHHHHHHHHHHHHHHHTTS-CSSCT
T ss_pred cCCHHhCCHHHHHHHHHHHHHcC--------------------------CCHHHHHHHHHHHHHHHHHHHHcCC-cccCc
Confidence 35677788999999998764311 2456788899999999874 343 45799
Q ss_pred cc
Q 028022 145 FG 146 (215)
Q Consensus 145 F~ 146 (215)
+.
T Consensus 98 ~~ 99 (118)
T 2kd1_A 98 AA 99 (118)
T ss_dssp TT
T ss_pred cc
Confidence 73
No 12
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=65.26 E-value=4 Score=27.21 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=36.4
Q ss_pred cccccccchhHhHHhhhhcc-cCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCc
Q 028022 69 LTLARCSGAHVIEFLKYLDQ-FGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEE---NGGRPESNP 144 (215)
Q Consensus 69 lsL~~Csg~hVleFLrylDq-fGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAAfEE---~Gg~pE~NP 144 (215)
+.|...+..+|.+|+.||-. .| .+-.|+...+.-||++|+- .|. -+.||
T Consensus 47 ~~l~~it~~~i~~~~~~l~~~~~--------------------------~s~~Ti~~~~~~lr~~~~~a~~~~~-i~~nP 99 (112)
T 2key_A 47 LQFHELTEDFLRDYLIYMKKTLC--------------------------NADSTAQRNLSTIKIYVSAAIKKGY-MENDP 99 (112)
T ss_dssp CCTTTCCHHHHHHHHHHHHHTSC--------------------------CCHHHHHHHHHHHHHHHHHHHHTTS-CCSCH
T ss_pred CCHHHcCHHHHHHHHHHHHHccC--------------------------cchhhHHHHHHHHHHHHHHHHHCCC-cccCC
Confidence 35667788999999998754 22 2345888899999999874 344 34688
Q ss_pred cc
Q 028022 145 FG 146 (215)
Q Consensus 145 F~ 146 (215)
|.
T Consensus 100 ~~ 101 (112)
T 2key_A 100 FK 101 (112)
T ss_dssp HH
T ss_pred cc
Confidence 74
No 13
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=64.54 E-value=3 Score=28.85 Aligned_cols=26 Identities=38% Similarity=0.874 Sum_probs=21.5
Q ss_pred cccCceeeeecCCCCCCCCCCCCCCC
Q 028022 87 DQFGKTKVHISGCPYFGHPNPPAPCA 112 (215)
Q Consensus 87 DqfGKTkVH~~~C~ffG~p~ppapC~ 112 (215)
|+.|-.|-...+|+|||.|.-..=|+
T Consensus 11 ~~~gt~kCRk~GC~fFGTpen~GFCT 36 (48)
T 2eqe_A 11 DRTGTSKCRKAGCVYFGTPENKGFCT 36 (48)
T ss_dssp SSCCSSBCSSTTCCSBCCTTTTTCCH
T ss_pred cccccchhhhcCCCcccCcccCceee
Confidence 67788888899999999998666664
No 14
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=63.00 E-value=12 Score=28.28 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=45.9
Q ss_pred hhhhHHHHHHHHHhcCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 028022 51 KRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLR 130 (215)
Q Consensus 51 KRRdWntF~qyL~n~rPPlsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLR 130 (215)
-++.++.|..||.+. .|..-+..||.+|+.++-..| +..++...+.-|+
T Consensus 27 y~~~~~~~~~~~~~~----~~~~i~~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~ 75 (283)
T 1z19_A 27 YMSKIKAIRRGLPDA----PLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLS 75 (283)
T ss_dssp HHHHHHHHHHHSCSC----BGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC----cHHhCCHHHHHHHHHHHhhcC---------------------------chhhHHHHHHHHH
Confidence 356677888888653 466778999999999875321 2357888889999
Q ss_pred HHHHHhC--CCCCCCccc
Q 028022 131 AAYEENG--GRPESNPFG 146 (215)
Q Consensus 131 AAfEE~G--g~pE~NPF~ 146 (215)
++|+-.- +.-+.|||.
T Consensus 76 ~~~~~a~~~~~i~~np~~ 93 (283)
T 1z19_A 76 DAFREAIAEGHITTNHVA 93 (283)
T ss_dssp HHHHHHHHTTSCSCCTTT
T ss_pred HHHHHHHHCCCCCcCchh
Confidence 9988531 334578874
No 15
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=62.93 E-value=8.6 Score=37.97 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=20.3
Q ss_pred CCCcc-chhHHHHHHH--HHHHHHHhh
Q 028022 141 ESNPF-GARAVRIYLR--EVRESQAKA 164 (215)
Q Consensus 141 E~NPF-~araVRlYLR--eVRd~QAKA 164 (215)
|.||| |.|++|+||. |+=++|.+|
T Consensus 683 E~NPmLG~RGiR~~l~~peif~~Q~rA 709 (913)
T 2x0s_A 683 ELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp CSSGGGSSCHHHHHHHSCHHHHHHHHH
T ss_pred CCChhhhccchhhhccCcHHHHHHHHH
Confidence 66998 8999999998 777788765
No 16
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=61.18 E-value=13 Score=32.19 Aligned_cols=34 Identities=41% Similarity=0.753 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhCCCC---------------------CCCcc-chhHHHHHHHH
Q 028022 123 DALIGRLRAAYEENGGRP---------------------ESNPF-GARAVRIYLRE 156 (215)
Q Consensus 123 DALIGRLRAAfEE~Gg~p---------------------E~NPF-~araVRlYLRe 156 (215)
+...--++.+++.++++| |.||| +.|.||+||..
T Consensus 62 ~~q~~~~~~~~~~~~~~~v~VR~~d~g~dk~~~~~~~~~E~nP~LG~RgiR~~l~~ 117 (324)
T 2xz9_A 62 EEQFEAYKEVVEKMGGRPVTIRTLDIGGDKELPYLDMPKEMNPFLGYRAIRLCLDR 117 (324)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEECCCCBGGGCCTTTCCCCCSCGGGSSBTHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCceEEEeCCCCcchhhhhhccccccCcccccceeeeeccc
Confidence 344446677777766652 67998 89999999983
No 17
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=59.08 E-value=4.3 Score=30.39 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCC
Q 028022 121 SLDALIGRLRAAYEENGGRPE 141 (215)
Q Consensus 121 SLDALIGRLRAAfEE~Gg~pE 141 (215)
+||..|.|||..+++.+..|+
T Consensus 76 ~l~v~I~rLRkKL~~~~~~~~ 96 (120)
T 2zxj_A 76 TVDVTIRRLREKIEDDPSHPE 96 (120)
T ss_dssp HHHHHHHHHHHHHCSSTTSCS
T ss_pred ChHHHHHHHHHHHhhCCCCCC
Confidence 799999999999988776653
No 18
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=55.54 E-value=6 Score=27.40 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHHHHHhCCCC
Q 028022 120 GSLDALIGRLRAAYEENGGRP 140 (215)
Q Consensus 120 GSLDALIGRLRAAfEE~Gg~p 140 (215)
.+||.+|-|||..+++.++.+
T Consensus 67 ~~l~~~I~rLRkkL~~~~~~~ 87 (102)
T 3zq7_A 67 HYLRIYMGHLRQKLEQDPARP 87 (102)
T ss_dssp HHHHHHHHHHHHHHCSSTTSC
T ss_pred chHHHHHHHHHHHhhcCCCCC
Confidence 379999999999998876543
No 19
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=52.33 E-value=6.7 Score=28.27 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=16.6
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 028022 120 GSLDALIGRLRAAYEENGGR 139 (215)
Q Consensus 120 GSLDALIGRLRAAfEE~Gg~ 139 (215)
.+||.+|.|||..+++.+..
T Consensus 75 ~~l~~~I~rLRkkL~~~~~~ 94 (120)
T 2z9m_A 75 RTVDVTIRRLREKIEDDPSH 94 (120)
T ss_dssp HHHHHHHHHHHHHHCSSTTS
T ss_pred chHHHHHHHHHHHhhcCCCC
Confidence 37999999999999876654
No 20
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=51.94 E-value=10 Score=28.80 Aligned_cols=15 Identities=47% Similarity=0.771 Sum_probs=11.6
Q ss_pred HHhhhCCchhhhhcc
Q 028022 161 QAKARGIPYEKKKRK 175 (215)
Q Consensus 161 QAKARgi~y~kkkrk 175 (215)
+-|.-||+|-+|||+
T Consensus 39 ~~KGLGIsYgRkkRr 53 (86)
T 1tac_A 39 ITKGLGISYGRKKRR 53 (86)
T ss_dssp SSTTSSSSSCCCSGG
T ss_pred ccCCCceEecccccc
Confidence 457889999877754
No 21
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=49.82 E-value=14 Score=36.52 Aligned_cols=26 Identities=42% Similarity=0.601 Sum_probs=22.2
Q ss_pred CCCCcc-chhHHHHHHH--HHHHHHHhhh
Q 028022 140 PESNPF-GARAVRIYLR--EVRESQAKAR 165 (215)
Q Consensus 140 pE~NPF-~araVRlYLR--eVRd~QAKAR 165 (215)
-|.||| +.|.+|+||. |+=++|.+|-
T Consensus 662 ~E~NP~LG~RG~Rl~l~~peif~~QlrAi 690 (876)
T 1vbg_A 662 SEVNPMLGFRGCRLGISYPELTEMQARAI 690 (876)
T ss_dssp CCSCGGGSSCTHHHHHHSHHHHHHHHHHH
T ss_pred cCCCCcccccccccccCChHHHHHHHHHH
Confidence 589998 7899999998 8888888773
No 22
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=48.08 E-value=23 Score=33.30 Aligned_cols=43 Identities=33% Similarity=0.556 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHhCCC---------------------CCCCcc-chhHHHHHHH--HHHHHHHhh
Q 028022 122 LDALIGRLRAAYEENGGR---------------------PESNPF-GARAVRIYLR--EVRESQAKA 164 (215)
Q Consensus 122 LDALIGRLRAAfEE~Gg~---------------------pE~NPF-~araVRlYLR--eVRd~QAKA 164 (215)
.+...--++.+++.++++ .|.||| |.|+||+||. ++=+.|.+|
T Consensus 312 ~~~q~~~~~~~~~~~~g~pv~VR~lD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~~p~if~~QlrA 378 (572)
T 2wqd_A 312 EEEQFEAYKEVLEAMGGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLSLAQQDIFRPQLRA 378 (572)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCCCTTSCCTTSCCCCCSCGGGSSCHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEECCCCCccchhhccCcccCCchhhhhhhhhcccChHHHHHHHHH
Confidence 455666677777777665 367997 7999999995 454444443
No 23
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=45.55 E-value=21 Score=33.64 Aligned_cols=34 Identities=35% Similarity=0.553 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHhCCC---------------------CCCCcc-chhHHHHHHH
Q 028022 122 LDALIGRLRAAYEENGGR---------------------PESNPF-GARAVRIYLR 155 (215)
Q Consensus 122 LDALIGRLRAAfEE~Gg~---------------------pE~NPF-~araVRlYLR 155 (215)
.+...--++.+++.++++ .|.||| |.|+||+||.
T Consensus 310 ~~~q~~~~~~~~~~~~g~pv~VRtlD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~ 365 (575)
T 2hwg_A 310 EEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEENPFLGWRAIRIAMD 365 (575)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCCSSSCCCGGGCCCCCSCGGGSSCTHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCceEEEeCCCCCccchhhccCCCCCCccccchheeeccc
Confidence 455666677788877665 368998 8999999996
No 24
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=43.46 E-value=17 Score=35.91 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=22.1
Q ss_pred CCCCcc-chhHHHHHHH--HHHHHHHhhh
Q 028022 140 PESNPF-GARAVRIYLR--EVRESQAKAR 165 (215)
Q Consensus 140 pE~NPF-~araVRlYLR--eVRd~QAKAR 165 (215)
-|.||| +.|.+|+||. |+=++|.+|-
T Consensus 655 ~E~NP~LG~RG~Rl~l~~peif~~QlrAi 683 (873)
T 1kbl_A 655 HEFNPMMGHRGCRLAVTYPEIAKMQTRAV 683 (873)
T ss_dssp CCSCGGGSSCTHHHHHHCHHHHHHHHHHH
T ss_pred cCCCCCcccceeccccCChHHHHHHHHHH
Confidence 589997 7899999998 8888888773
No 25
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=43.19 E-value=12 Score=25.56 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHHHHhC
Q 028022 120 GSLDALIGRLRAAYEENG 137 (215)
Q Consensus 120 GSLDALIGRLRAAfEE~G 137 (215)
.+||.+|-|||..+++.|
T Consensus 61 ~~l~~~I~rLRkkL~~~~ 78 (96)
T 3rjp_A 61 NVVDVYIRYLRGKIDIPG 78 (96)
T ss_dssp HHHHHHHHHHHHHHCCTT
T ss_pred chHHHHHHHHHHHhcccC
Confidence 489999999999998775
No 26
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=43.04 E-value=6.2 Score=30.00 Aligned_cols=16 Identities=50% Similarity=0.704 Sum_probs=9.8
Q ss_pred HHHhhhCCchhhhhcc
Q 028022 160 SQAKARGIPYEKKKRK 175 (215)
Q Consensus 160 ~QAKARgi~y~kkkrk 175 (215)
+.-|.-||+|-+|||+
T Consensus 38 Fl~KGLGIsYgRkkRr 53 (86)
T 3mi9_C 38 FITKALGISYGRKKRR 53 (86)
T ss_dssp HHHTTSCCCSCC----
T ss_pred hcccCCcccccccccc
Confidence 3568899999877653
No 27
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=41.92 E-value=52 Score=21.85 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=35.4
Q ss_pred CCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCC-
Q 028022 67 PPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEE---NGGRPES- 142 (215)
Q Consensus 67 PPlsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAAfEE---~Gg~pE~- 142 (215)
.-+.|..-+..||.+||..+-..| . .++..+...|+++|+- .|. -+.
T Consensus 40 G~~~l~~It~~~i~~~~~~l~~~~---------------------------~-~t~~~~~~~l~~i~~~Av~~~~-i~~~ 90 (106)
T 2khv_A 40 GPLSVQDVDTKLIMKVLDPIWEQK---------------------------P-ETASRLRGRIESVLDWATVRGY-REGD 90 (106)
T ss_dssp TTSBSSSCCHHHHHHHHHHHHHHC---------------------------H-HHHHHHHHHHHHHHHHHHHHTS-SCSC
T ss_pred CCccHHHcCHHHHHHHHHHHHHhC---------------------------h-HHHHHHHHHHHHHHHHHHHcCC-cCCC
Confidence 456677788999999997432110 1 5788889999999874 354 356
Q ss_pred Cccc
Q 028022 143 NPFG 146 (215)
Q Consensus 143 NPF~ 146 (215)
||+.
T Consensus 91 NP~~ 94 (106)
T 2khv_A 91 NPAR 94 (106)
T ss_dssp CTTS
T ss_pred CchH
Confidence 9974
No 28
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=41.91 E-value=33 Score=22.65 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=33.7
Q ss_pred ccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCccc
Q 028022 70 TLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEE---NGGRPESNPFG 146 (215)
Q Consensus 70 sL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAAfEE---~Gg~pE~NPF~ 146 (215)
.|..-+..||.+|+.++-.. .+..++..++..||++|+- .| .-+.||+.
T Consensus 47 ~l~~it~~~i~~~~~~l~~~---------------------------~s~~t~~~~~~~l~~~~~~A~~~~-~i~~NP~~ 98 (116)
T 2kj5_A 47 KVEDVKPRHIDDVLKAVMKR---------------------------GAPSIANDTLRWLKRMFNYAIKRH-IIEYNPAA 98 (116)
T ss_dssp BSSSCCHHHHHHHHHHHHHH---------------------------TCHHHHHHHHHHHHHHHHHHHHTT-SCSSCGGG
T ss_pred cHhhCCHHHHHHHHHHHHHc---------------------------cChHHHHHHHHHHHHHHHHHHHcC-ccccCchh
Confidence 45566788999998866421 1345788889999999873 34 34679974
No 29
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=41.63 E-value=22 Score=35.59 Aligned_cols=37 Identities=30% Similarity=0.461 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCcc-chhHHHHHHH--HHHHHHHhh
Q 028022 121 SLDALIGRLRAAYEENGGRPESNPF-GARAVRIYLR--EVRESQAKA 164 (215)
Q Consensus 121 SLDALIGRLRAAfEE~Gg~pE~NPF-~araVRlYLR--eVRd~QAKA 164 (215)
+.|.++.++.. .-|.||| |.|.+|++|. |+=++|.+|
T Consensus 670 ~~dk~~~~~~~-------~~E~NPmLG~RG~Rl~l~~peif~~QlrA 709 (913)
T 1h6z_A 670 PAEKVRNRVNA-------LHELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp CHHHHHHHHHS-------SCCSSSTTSSCHHHHHHHSTTHHHHHHHH
T ss_pred CHHHHHhhhcC-------CCCCCCCCccchhccCCCChHHHHHHHHH
Confidence 46777666542 4689999 9999999996 566777765
No 30
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=40.89 E-value=41 Score=23.07 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=33.6
Q ss_pred cccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCcc
Q 028022 69 LTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEEN--GGRPESNPF 145 (215)
Q Consensus 69 lsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAAfEE~--Gg~pE~NPF 145 (215)
+.|..-+..||.+||..+-..| +..++..++..|+++|+-. -|.-+.||+
T Consensus 50 ~~l~~It~~~i~~~l~~l~~~~---------------------------~~~t~~~~~~~L~~if~~Av~~g~i~~NP~ 101 (118)
T 2kj9_A 50 KDIAELDTGDLLVPIKKIEKLG---------------------------YLEIAMRVKQYATAIMRYAVQQKMIRFNPA 101 (118)
T ss_dssp SBGGGCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHHHTTSSSSCHH
T ss_pred CCHHHCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHHHHHHHHHcCCcccCch
Confidence 3466678889999987543211 2357888899999998742 233457886
No 31
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=37.79 E-value=47 Score=26.22 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhcCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHH
Q 028022 54 DWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAY 133 (215)
Q Consensus 54 dWntF~qyL~n~rPPlsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAAf 133 (215)
.++.|..||. -+.|..-+..||.+|+.++-..| +..++..++..|+++|
T Consensus 103 ~~~~~~~~~g----~~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~~~ 151 (356)
T 1z1b_A 103 KIKAIRRGLP----DAPLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSDAF 151 (356)
T ss_dssp HHHHHHHHSC----SCBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CCcHHHCCHHHHHHHHHHHHHcc---------------------------cHHHHHHHHHHHHHHH
Confidence 3445555554 24566678889999998764321 2357788889999998
Q ss_pred HHh--CCCCCCCccc
Q 028022 134 EEN--GGRPESNPFG 146 (215)
Q Consensus 134 EE~--Gg~pE~NPF~ 146 (215)
+-. -+.-+.||+.
T Consensus 152 ~~a~~~~~i~~np~~ 166 (356)
T 1z1b_A 152 REAIAEGHITTNHVA 166 (356)
T ss_dssp HHHHHTTSCSSCTTT
T ss_pred HHHHHcCCcccChHh
Confidence 743 1334578874
No 32
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=37.19 E-value=25 Score=25.38 Aligned_cols=20 Identities=45% Similarity=0.715 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 028022 120 GSLDALIGRLRAAYEENGGR 139 (215)
Q Consensus 120 GSLDALIGRLRAAfEE~Gg~ 139 (215)
.+||.+|-|||..+++.+..
T Consensus 80 ~tl~~~I~rLRkkL~~~~~~ 99 (115)
T 2k4j_A 80 KSIDVIIGRLRSKIEKNPKQ 99 (115)
T ss_dssp HHHHHHHHHHHHHHHHSSCC
T ss_pred hHHHHHHHHHHHHhhcCCCC
Confidence 58999999999999987653
No 33
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=36.44 E-value=7.5 Score=31.16 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=16.5
Q ss_pred ceeeeecCCCCCCCCCCCCCCCCchh----hhcchhHHHHHHHHH
Q 028022 91 KTKVHISGCPYFGHPNPPAPCACPLK----QAWGSLDALIGRLRA 131 (215)
Q Consensus 91 KTkVH~~~C~ffG~p~ppapC~CPlR----QAWGSLDALIGRLRA 131 (215)
+-..|...|.|. ||.||.. .--|+++.|..-|+.
T Consensus 24 ~~~~He~~C~f~-------p~~Cp~~g~~C~~~G~~~~l~~H~~~ 61 (193)
T 2a25_A 24 EKADHEELCEFR-------PYSCPCPGASCKWQGSLDAVMPHLMH 61 (193)
T ss_dssp -------------------CEECCCC--CCCCEECSTTHHHHHHH
T ss_pred cccchhhcCCCC-------CccCCCCCCCCcCCCCHHHHHHHHHH
Confidence 446899999775 7777764 223899999999986
No 34
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=34.26 E-value=18 Score=25.24 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=16.3
Q ss_pred chhHHHHHHHHHHHHHhCC
Q 028022 120 GSLDALIGRLRAAYEENGG 138 (215)
Q Consensus 120 GSLDALIGRLRAAfEE~Gg 138 (215)
.+||.+|-|||..++..++
T Consensus 68 ~~l~~~I~rLRkkL~~~~~ 86 (109)
T 2hqn_A 68 NVIEVAINQIRQKMDKPLG 86 (109)
T ss_dssp THHHHHHHHHHHHTTTTSC
T ss_pred chHHHHHHHHHHHhccccC
Confidence 4899999999999987644
No 35
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=33.81 E-value=17 Score=25.44 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 028022 120 GSLDALIGRLRAAYEENGGR 139 (215)
Q Consensus 120 GSLDALIGRLRAAfEE~Gg~ 139 (215)
.+||.+|-|||..++..+..
T Consensus 70 ~~l~~~I~rLRkkL~~~~~~ 89 (110)
T 1opc_A 70 RSIDVQISRLRRMVEEDPAH 89 (110)
T ss_dssp SCHHHHHHHHHHHHCSCTTS
T ss_pred chHHHHHHHHHHHhhcCCCC
Confidence 47999999999999876643
No 36
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=33.15 E-value=1.1e+02 Score=20.43 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHH
Q 028022 55 WNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYE 134 (215)
Q Consensus 55 WntF~qyL~n~rPPlsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAAfE 134 (215)
++.|..||. -+.|..-+..||.+|+.++... .+-.++..++..|+++|+
T Consensus 36 ~~~i~p~~g----~~~l~~It~~~i~~~~~~l~~~---------------------------~s~~t~~~~~~~l~~i~~ 84 (112)
T 3lys_A 36 LKYLKTYMP----NVLISEITASSYQRALNKFAET---------------------------HAKASTKGFHTRVRASIQ 84 (112)
T ss_dssp HHHHHHHSS----SCBTTTCCHHHHHHHHHHHHTT---------------------------SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC----CCCHHhCCHHHHHHHHHHHHHh---------------------------ccHHHHHHHHHHHHHHHH
Confidence 344555553 3567778899999999876321 134578888999999998
Q ss_pred Hh--CCCCCCCccc
Q 028022 135 EN--GGRPESNPFG 146 (215)
Q Consensus 135 E~--Gg~pE~NPF~ 146 (215)
-. -|--+.||+.
T Consensus 85 ~Av~~g~i~~NP~~ 98 (112)
T 3lys_A 85 CLIEEGRLQKDFTT 98 (112)
T ss_dssp HHHHTTSCSSCTTS
T ss_pred HHHHCCCcccCccc
Confidence 42 2334579975
No 37
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=32.40 E-value=19 Score=26.24 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCccccc------ccchhHhHHhhhhcccCcee
Q 028022 55 WNTFLQYLKNHKPPLTLAR------CSGAHVIEFLKYLDQFGKTK 93 (215)
Q Consensus 55 WntF~qyL~n~rPPlsL~~------Csg~hVleFLrylDqfGKTk 93 (215)
++.+.+|+..+ ++++++. -|-+-++-+|.|+|+.|-|+
T Consensus 68 ~~~l~~~~~~~-~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~Tr 111 (121)
T 2pjp_A 68 ANMIRDLDQEC-GSTCAADFRDRLGVGRKLAIQILEYFDRIGFTR 111 (121)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHC-CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeE
Confidence 55666666666 6676654 56677888999999999986
No 38
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=32.01 E-value=31 Score=31.12 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=30.9
Q ss_pred cchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcc
Q 028022 75 SGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWG 120 (215)
Q Consensus 75 sg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWG 120 (215)
....|-+||..+.-.+.+.|-+....--.....|.||+|.+|++--
T Consensus 108 ~~~~V~~~l~~l~~~~d~~v~~~~~~~~~~~~~p~~~~~tl~~~l~ 153 (458)
T 3qfs_A 108 DSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALT 153 (458)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEEESSTTCSCCCSSSSSEEHHHHHH
T ss_pred CHHHHHHHHHHhCcCCCceEEecCCCcccccCCCCCCCeeHHHHHH
Confidence 3566888998888777777776543222233457888998887643
No 39
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=31.60 E-value=25 Score=24.52 Aligned_cols=19 Identities=42% Similarity=0.567 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHHHHHhCC
Q 028022 120 GSLDALIGRLRAAYEENGG 138 (215)
Q Consensus 120 GSLDALIGRLRAAfEE~Gg 138 (215)
.+||.+|.|||..+++.|.
T Consensus 70 ~~l~~~I~rLRkkL~~~~~ 88 (106)
T 1gxq_A 70 RTVDVHIRRLRKALEPGGH 88 (106)
T ss_dssp HHHHHHHHHHHHHHGGGTG
T ss_pred ccHHHHHHHHHHHhcccCC
Confidence 5899999999999987653
No 40
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.47 E-value=25 Score=26.43 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.0
Q ss_pred CCCcccccccchhHhHHhhhh
Q 028022 66 KPPLTLARCSGAHVIEFLKYL 86 (215)
Q Consensus 66 rPPlsL~~Csg~hVleFLryl 86 (215)
.||..|+.=|-.+|.+|||++
T Consensus 10 ~pP~dLs~lSv~EVs~~Lr~i 30 (84)
T 2dkz_A 10 QPPADLSGLSIEEVSKSLRFI 30 (84)
T ss_dssp CCCSCCSSCCHHHHHHHGGGT
T ss_pred CCchhhhhcCHHHHHHHHHHc
Confidence 699999999999999999953
No 41
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=29.06 E-value=24 Score=25.20 Aligned_cols=20 Identities=25% Similarity=0.851 Sum_probs=16.5
Q ss_pred eeeecCCCCCCCCCCCCCCC
Q 028022 93 KVHISGCPYFGHPNPPAPCA 112 (215)
Q Consensus 93 kVH~~~C~ffG~p~ppapC~ 112 (215)
.+-..+|.|||.|..-..|.
T Consensus 14 ~lC~ngCGFfGnpaT~nlCS 33 (62)
T 2kzy_A 14 MLCSTGCGFYGNPRTNGMCS 33 (62)
T ss_dssp CBCTTCCSSBCCTTTTSCCH
T ss_pred cchhhCCCCcCChhhcCcCH
Confidence 34568999999999888886
No 42
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=27.63 E-value=26 Score=25.51 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 028022 120 GSLDALIGRLRAAYEENGGR 139 (215)
Q Consensus 120 GSLDALIGRLRAAfEE~Gg~ 139 (215)
.+||.+|-|||..+++.+..
T Consensus 82 ~tl~~~I~rLRkkL~~~~~~ 101 (121)
T 2hwv_A 82 RTVDVTVRRLREKIEDSPSH 101 (121)
T ss_dssp HHHHHHHHHHHHHHCSSTTS
T ss_pred cHHHHHHHHHHHHHhhcCCC
Confidence 48999999999999876643
No 43
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=27.19 E-value=44 Score=22.49 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=17.5
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCCc
Q 028022 119 WGSLDALIGRLRAAYEENGGRPESNP 144 (215)
Q Consensus 119 WGSLDALIGRLRAAfEE~Gg~pE~NP 144 (215)
-|.=..||-||..+.++.|..++.-|
T Consensus 25 ~G~KadLieRL~~~~~~~~~~~~~~p 50 (51)
T 1h1j_S 25 GGLKNELVQRLIKDDEESKGESEVSP 50 (51)
T ss_dssp CSSHHHHHHHHHHHHHHSCC------
T ss_pred CCcHHHHHHHHHHHHHhccCCcccCC
Confidence 36667999999999999998777655
No 44
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi}
Probab=27.14 E-value=81 Score=23.79 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHhcCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 028022 52 RRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRA 131 (215)
Q Consensus 52 RRdWntF~qyL~n~rPPlsL~~Csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRA 131 (215)
++.|+.|..| +...+..||.+|+.++-..| .+..++...+..|++
T Consensus 34 ~~~l~~~~~~---------~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l~~ 78 (292)
T 4a8e_A 34 TYYISKFFEE---------GHSPTARDALRFLAKLKRKG--------------------------YSTRSLNLVIQALKA 78 (292)
T ss_dssp HHHHHHHHHH---------TCCSSHHHHHHHHHHHHHHC--------------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------HhcCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHH
Confidence 4556666666 66788999999999876422 234577888888888
Q ss_pred HHHHhC
Q 028022 132 AYEENG 137 (215)
Q Consensus 132 AfEE~G 137 (215)
+|+...
T Consensus 79 ~~~~a~ 84 (292)
T 4a8e_A 79 YFKFEG 84 (292)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 888643
No 45
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=27.08 E-value=42 Score=31.12 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=30.9
Q ss_pred cchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcc
Q 028022 75 SGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWG 120 (215)
Q Consensus 75 sg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWG 120 (215)
....|-+||..+.-.+.+.|.+....--.....|.||+|.+|++.-
T Consensus 268 ~~~~V~~~l~~l~l~~d~~v~~~~~~~~~~~~~~~p~~~tl~~~l~ 313 (618)
T 3qe2_A 268 DSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALT 313 (618)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEEESCTTCSCCSSSSSSEEHHHHHH
T ss_pred CHHHHHHHHHHhCcCCCceEEEecCCccccCCCCCCCceEHHHhhh
Confidence 3467888888887777787776543222233456789999988654
No 46
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=26.00 E-value=21 Score=28.16 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHh---cCCCcccccccchhHhHHhhhhcc
Q 028022 52 RRDWNTFLQYLKN---HKPPLTLARCSGAHVIEFLKYLDQ 88 (215)
Q Consensus 52 RRdWntF~qyL~n---~rPPlsL~~Csg~hVleFLrylDq 88 (215)
...|..|++|+-+ ....-.+.++.+.+..+||..+|.
T Consensus 64 ~~ll~~fG~~~~~~~~~~~y~~~l~~~g~~l~dFL~~ld~ 103 (189)
T 3tfg_A 64 EEWWIAFGEYWVTYTSEEGYGELLASAGDSLPEFMENLDN 103 (189)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcHHHHHhcCCCHHHHHHhHHH
Confidence 4569999999875 344446777889999999997764
No 47
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=25.55 E-value=15 Score=32.00 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=0.0
Q ss_pred CCCCccchhHHHHHHHHHHHHHHhhhCCch
Q 028022 140 PESNPFGARAVRIYLREVRESQAKARGIPY 169 (215)
Q Consensus 140 pE~NPF~araVRlYLReVRd~QAKARgi~y 169 (215)
++.+| -|=.-|.=.+ | -||.|
T Consensus 312 ~~~~~-------~~~~~~~~~~-~-~~~~~ 332 (358)
T 2pk2_A 312 QEARP-------NYHCQLCFLR-S-LGIDY 332 (358)
T ss_dssp ------------------------------
T ss_pred CCCcc-------ceecHHHhcc-c-cceee
Confidence 55667 3333333333 6 99999
No 48
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=24.88 E-value=1.4e+02 Score=19.07 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=20.7
Q ss_pred hcchhHHHHHHHHHHHHHh--CCCCCCCccc
Q 028022 118 AWGSLDALIGRLRAAYEEN--GGRPESNPFG 146 (215)
Q Consensus 118 AWGSLDALIGRLRAAfEE~--Gg~pE~NPF~ 146 (215)
+..++..++..||++|+-. -+--+.||+.
T Consensus 62 s~~t~~~~~~~l~~~~~~A~~~~~i~~NP~~ 92 (108)
T 2kob_A 62 AKNTLKAIRNTASQIFRLAIENRAIDFNPAD 92 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSSSSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcccCccc
Confidence 4467888999999998742 2334689984
No 49
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=24.59 E-value=51 Score=24.56 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHHHHHhCC
Q 028022 120 GSLDALIGRLRAAYEENGG 138 (215)
Q Consensus 120 GSLDALIGRLRAAfEE~Gg 138 (215)
.+||.+|.|||..+++.+.
T Consensus 99 ~~l~~~I~rLRkkL~~~~~ 117 (133)
T 3q9v_A 99 NVVDVHMANLRAKLRDLDG 117 (133)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 4799999999999998765
No 50
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=24.12 E-value=24 Score=26.15 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=18.2
Q ss_pred eecCCCCCCCCCCCCCCCCchhh
Q 028022 95 HISGCPYFGHPNPPAPCACPLKQ 117 (215)
Q Consensus 95 H~~~C~ffG~p~ppapC~CPlRQ 117 (215)
=..+|.|||.|..-..|.-=+|.
T Consensus 19 C~ngCGFfGnpaT~nlCSkCyrd 41 (74)
T 2c7n_A 19 CKKGCGYYGNPAWQGFCSKCWRE 41 (74)
T ss_dssp CTTCSSSCCCGGGTTCCHHHHHH
T ss_pred HHhCCCCCCChhhcCccHHHHHH
Confidence 34789999999999999755543
No 51
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=24.09 E-value=32 Score=22.95 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=15.5
Q ss_pred hcCCCcccccccchhHhHHhhhhcc
Q 028022 64 NHKPPLTLARCSGAHVIEFLKYLDQ 88 (215)
Q Consensus 64 n~rPPlsL~~Csg~hVleFLrylDq 88 (215)
...|+..|+.=--.+|++||+.+..
T Consensus 74 ~~Mp~~~Ls~~ei~~l~~yl~~~~~ 98 (110)
T 2l4d_A 74 LAMPNMRLGDAEVSALISYLEEETA 98 (110)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHccc
Confidence 3678776654455566777765543
No 52
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=23.24 E-value=62 Score=23.79 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHhhhCCch
Q 028022 147 ARAVRIYLREVRESQAKARGIPY 169 (215)
Q Consensus 147 araVRlYLReVRd~QAKARgi~y 169 (215)
..++---|+..|...|+.+|||-
T Consensus 14 d~~l~~~L~~wR~~~A~~~~vP~ 36 (103)
T 2e1f_A 14 QIVLYGKLVEARQKHANKMDVPP 36 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 35677889999999999999984
No 53
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=22.67 E-value=14 Score=32.13 Aligned_cols=7 Identities=29% Similarity=0.278 Sum_probs=3.0
Q ss_pred chhhHhh
Q 028022 45 SRYESQK 51 (215)
Q Consensus 45 srYesQK 51 (215)
..|...|
T Consensus 124 ~~y~~~~ 130 (358)
T 2pk2_A 124 EAYLQQV 130 (358)
T ss_dssp HHHHGGG
T ss_pred hhhhHHH
Confidence 3455333
No 54
>1t4w_A CEP-1, C.elegans P53 tumor suppressor-like transcription factor; DNA-binding domain; 2.10A {Caenorhabditis elegans} SCOP: b.2.5.2
Probab=22.34 E-value=37 Score=28.81 Aligned_cols=14 Identities=36% Similarity=0.757 Sum_probs=11.7
Q ss_pred hhhhHHHHHHHHHh
Q 028022 51 KRRDWNTFLQYLKN 64 (215)
Q Consensus 51 KRRdWntF~qyL~n 64 (215)
-||||+.|++-+.+
T Consensus 181 PRRDwkNFcEk~~~ 194 (196)
T 1t4w_A 181 PRRDWKNFCEREDA 194 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chhhhHHHHhhhhc
Confidence 48999999987764
No 55
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.22 E-value=1.2e+02 Score=21.84 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhCCCCCCCccchhHHHHHH
Q 028022 126 IGRLRAAYEENGGRPESNPFGARAVRIYL 154 (215)
Q Consensus 126 IGRLRAAfEE~Gg~pE~NPF~araVRlYL 154 (215)
|-.|...|+. |+|-....|.-|
T Consensus 23 l~~Le~~F~~-------~~yp~~~~r~~L 44 (89)
T 2ecb_A 23 LRVLQASFLN-------SSVLTDEELNRL 44 (89)
T ss_dssp HHHHHHHHHH-------CSSCCHHHHHHH
T ss_pred HHHHHHHHHh-------cCCCCHHHHHHH
Confidence 5677788854 566666655555
No 56
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=21.14 E-value=13 Score=28.62 Aligned_cols=14 Identities=50% Similarity=1.120 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhcCC
Q 028022 54 DWNTFLQYLKNHKP 67 (215)
Q Consensus 54 dWntF~qyL~n~rP 67 (215)
-|.+|.+||..|.|
T Consensus 63 GW~~L~~yL~khdp 76 (97)
T 1v5r_A 63 GWETFAGYLLKHDP 76 (97)
T ss_dssp EEEEHHHHHHHHCH
T ss_pred cHHHHHHHHHHcCc
Confidence 39999999999988
No 57
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=21.10 E-value=57 Score=26.33 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhCCC
Q 028022 123 DALIGRLRAAYEENGGR 139 (215)
Q Consensus 123 DALIGRLRAAfEE~Gg~ 139 (215)
+--+.+|+++|+++||-
T Consensus 136 ~~~~~~l~~~y~~~gg~ 152 (158)
T 1am7_A 136 EHKADSLIAKFKEAGGT 152 (158)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHcCCc
Confidence 66667999999999974
No 58
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=20.94 E-value=53 Score=23.38 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCC
Q 028022 122 LDALIGRLRAAYEENGGRPESN 143 (215)
Q Consensus 122 LDALIGRLRAAfEE~Gg~pE~N 143 (215)
-|-=|+||++.+.+||.-+|-|
T Consensus 37 ~eQEieRL~~LLkqHgl~~e~~ 58 (58)
T 3a2a_A 37 KEQEIERLNKLLRQHGLLGEVN 58 (58)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCCcccCC
Confidence 4667999999999999888755
No 59
>2jrb_A ORF 1 protein; RNA binding protein; NMR {Mus musculus}
Probab=20.21 E-value=44 Score=25.09 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=18.5
Q ss_pred CchhhHhhhhhHHHHHHHHHhcC
Q 028022 44 PSRYESQKRRDWNTFLQYLKNHK 66 (215)
Q Consensus 44 ~srYesQKRRdWntF~qyL~n~r 66 (215)
.|-.-=|+||+|+...+-|+.+.
T Consensus 16 fSaeTLq~RRew~~IfkvLk~kn 38 (88)
T 2jrb_A 16 FSPETMKARRAWTDVIQTLREHK 38 (88)
T ss_dssp CTTTHHHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHcC
Confidence 34445699999999999998764
Done!