BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028023
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Query: 46 ARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQT 105
A +RST + YG + ++ K +F Y G + DEID EFLGKD T VQ
Sbjct: 4 AEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQ-WDEIDIEFLGKDTTKVQF 62
Query: 106 NYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKP 165
NYYT G G E++ LGFD S+GFH Y W P I+W +DG + A N P+ P
Sbjct: 63 NYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATAN----IPSTP 118
Query: 166 MFLYASVWDASHIDKARWCGPYVGCDAPYV 195
+ ++W+ + +D W G Y G + Y
Sbjct: 119 GKIMMNLWNGTGVDD--WLGSYNGANPLYA 146
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Query: 46 ARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQT 105
A +RST + YG + ++ K +F Y G + DEID EFLGKD T VQ
Sbjct: 62 AEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQ-WDEIDIEFLGKDTTKVQF 120
Query: 106 NYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKP 165
NYYT G G E++ LGFD S+GFH Y W P I+W +DG + A N P+ P
Sbjct: 121 NYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATAN----IPSTP 176
Query: 166 MFLYASVWDASHIDKARWCGPYVGCDAPYV 195
+ ++W+ + +D W G Y G + Y
Sbjct: 177 GKIMMNLWNGTGVDD--WLGSYNGANPLYA 204
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Query: 46 ARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQT 105
A +RST + YG + ++ K +F Y G + DEID EFLGKD T VQ
Sbjct: 60 AEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQ-WDEIDIEFLGKDTTKVQF 118
Query: 106 NYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKP 165
NYYT G G E++ LGFD S+GFH Y W P I+W +DG + A N P+ P
Sbjct: 119 NYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATAN----IPSTP 174
Query: 166 MFLYASVWDASHIDKARWCGPYVGCDAPYV 195
+ ++W+ + +D W G Y G + Y
Sbjct: 175 GKIMMNLWNGTGVDD--WLGSYNGANPLYA 202
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Query: 46 ARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQT 105
A +RST + YG + ++ K +F Y G + DEID EFLGKD T VQ
Sbjct: 4 AEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQ-WDEIDIEFLGKDTTKVQF 62
Query: 106 NYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKP 165
NYYT G G E++ LGFD S+GFH Y W P I+W +DG + A N P+ P
Sbjct: 63 NYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATAN----IPSTP 118
Query: 166 MFLYASVWDASHIDKARWCGPYVGCDAPYV 195
+ ++W+ + +D W G Y G + Y
Sbjct: 119 GKIMMNLWNGTGVDD--WLGSYNGANPLYA 146
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Query: 46 ARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQT 105
A +RST + YG + ++ K +F Y G + DEID EFLGKD T VQ
Sbjct: 4 AEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQ-WDEIDIEFLGKDTTKVQF 62
Query: 106 NYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKP 165
NYYT G G E++ LGFD S+GFH Y W P I+W +DG + A N P+ P
Sbjct: 63 NYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATAN----IPSTP 118
Query: 166 MFLYASVWDASHIDKARWCGPYVGCDAPYV 195
+ ++W+ + +D W G Y G + Y
Sbjct: 119 GKIMMNLWNGTGVDD--WLGSYNGANPLYA 146
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 7/145 (4%)
Query: 45 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQ 104
GA +R+ +F YG + ++ K +F Y + G DEID EFLGKD T VQ
Sbjct: 81 GAEYRTRDKFGYGLYQVRMKPAKNPGIVSSFFTYTGPVHG-TPWDEIDIEFLGKDTTKVQ 139
Query: 105 TNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNK 164
NYYT GN E I+DL FD SE FH Y W P+ I WL+DG+ V RA + P
Sbjct: 140 FNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDGEEVYRAY----DDIPVH 195
Query: 165 PMFLYASVWDASHIDKARWCGPYVG 189
P + ++W +D+ W G Y G
Sbjct: 196 PGKIMLNIWPGIGVDE--WLGAYDG 218
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 31 ADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEG-DKSQD 89
D S+T+ D G+ ++S R+ G F + I+ G T+G+ + YLS+ + D
Sbjct: 58 VDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHD 117
Query: 90 EIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 146
EID EFLG +QTN + G+G+RE L FD ++ +H Y I W P I + +D
Sbjct: 118 EIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVD 177
Query: 147 GKVVRRAERNEGEGFPNKPMFLYASVWDAS 176
+RR R FP +P+++Y SVWDAS
Sbjct: 178 DVPIRRYPRKSDATFPLRPLWVYGSVWDAS 207
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Query: 46 ARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQT 105
A +RST + YG + ++ K +F Y G + D+ID +FLGKD T VQ
Sbjct: 62 AEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQ-WDQIDIQFLGKDTTKVQF 120
Query: 106 NYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKP 165
NYYT G G E++ LGFD S+GFH Y W P I+W +DG + A N P+ P
Sbjct: 121 NYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATAN----IPSTP 176
Query: 166 MFLYASVWDASHIDKARWCGPYVGCDAPYV 195
+ ++W+ + +D W G Y G + Y
Sbjct: 177 GKIMMNLWNGTGVDD--WLGSYNGANPLYA 204
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 31 ADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEG-DKSQD 89
D S+T+ D G+ ++S R+ G F + I+ G T+G+ + YLS+ + D
Sbjct: 35 VDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHD 94
Query: 90 EIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 146
EID EFLG +QTN + G+G+RE L FD ++ +H Y I W P I + +D
Sbjct: 95 EIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVD 154
Query: 147 GKVVRRAERNEGEGFPNKPMFLYASVWDAS 176
+RR R FP +P+++Y SVWDAS
Sbjct: 155 DVPIRRYPRKSDATFPLRPLWVYGSVWDAS 184
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 75/147 (51%), Gaps = 7/147 (4%)
Query: 49 RSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYY 108
RS + YG + ++ K +F Y +G DEID EFLGKD T VQ NYY
Sbjct: 89 RSVQTYGYGLYEVRMKPAKNTGIVSSFFTYTGPTDG-TPWDEIDIEFLGKDTTKVQFNYY 147
Query: 109 TTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFL 168
T G GN E+I DLGFD + +H Y W P+ I+W +DG++ A P P +
Sbjct: 148 TNGAGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDGQLKHTATNQ----IPTTPGKI 203
Query: 169 YASVWDASHIDKARWCGPYVGCDAPYV 195
++W+ + +D+ W G Y G + Y
Sbjct: 204 MMNLWNGTGVDE--WLGSYNGVNPLYA 228
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 60/107 (56%), Gaps = 6/107 (5%)
Query: 89 DEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGK 148
DEID EFLGKD T VQ NYYT G GN E+I +LGFD + +H Y W P+ I+W +DG+
Sbjct: 91 DEIDIEFLGKDTTKVQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDGQ 150
Query: 149 VVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYV 195
+ A P P +Y S+W + +D+ W G Y G Y
Sbjct: 151 LKHTATTQ----IPQTPGKIYMSLWAGAGVDE--WLGSYNGVTPLYA 191
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 60/107 (56%), Gaps = 6/107 (5%)
Query: 89 DEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGK 148
DEID EFLGKD T VQ NYYT G G E++ LGFD S+GFH Y W P I+W +DG
Sbjct: 21 DEIDIEFLGKDTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV 80
Query: 149 VVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYV 195
+ A N P+ P + ++W+ + +D W G Y G + Y
Sbjct: 81 LKHTATAN----IPSTPGKIMMNLWNGTGVDD--WLGSYNGANPLYA 121
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 96/182 (52%), Gaps = 20/182 (10%)
Query: 34 NSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDF 93
N I L D G ++S +L+G FS ++ G+++G YLSS + DEIDF
Sbjct: 37 NEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNSE--HDEIDF 94
Query: 94 EFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVV 150
EFLG I+QTN +T G G+RE+ L FD ++ FH Y + W +I +L+D +
Sbjct: 95 EFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPI 154
Query: 151 RRAE--RNEGEGFP-NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDI 201
R + ++ G FP N+PM +Y+S+W+A ++K W AP++ Y+
Sbjct: 155 RVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDW------SKAPFIASYRSF 208
Query: 202 HV 203
H+
Sbjct: 209 HI 210
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 74/147 (50%), Gaps = 7/147 (4%)
Query: 49 RSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYY 108
RS + YG + ++ K +F Y +G DEID EFLGKD T VQ NYY
Sbjct: 65 RSVQTYGYGLYEVNMKPAKNVGIVSSFFTYTGPTDG-TPWDEIDIEFLGKDTTKVQFNYY 123
Query: 109 TTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFL 168
T G GN E+I +LGFD + +H Y W P+ I+W +DG++ A P P +
Sbjct: 124 TNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDGQLKHTATTQ----IPQTPGKI 179
Query: 169 YASVWDASHIDKARWCGPYVGCDAPYV 195
++W+ + +D+ W G Y G Y
Sbjct: 180 MMNLWNGAGVDE--WLGSYNGVTPLYA 204
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 9/155 (5%)
Query: 31 ADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEG-DKSQD 89
D S+T+ D G+ ++S R+ G F + I+ G T+G+ + YLS+ + D
Sbjct: 34 VDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHD 93
Query: 90 EIDFEFLGK---DKTIVQTNYYTTGTGN-----REEIHDLGFDCSEGFHEYVIKWGPDLI 141
EID EFLG +QTN + G+G+ RE L FD ++ +H Y I W P I
Sbjct: 94 EIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWFDPTQDYHNYAIYWTPSEI 153
Query: 142 QWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDAS 176
+ +D +RR R FP +PM++Y SVWDAS
Sbjct: 154 IFFVDDVPIRRYPRKSDATFPLRPMWVYGSVWDAS 188
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 9/155 (5%)
Query: 31 ADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEG-DKSQD 89
D S+T+ D G+ ++S R+ G F + I+ G T+G+ + YLS+ + D
Sbjct: 37 VDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHD 96
Query: 90 EIDFEFLGK---DKTIVQTNYYTTGTGN-----REEIHDLGFDCSEGFHEYVIKWGPDLI 141
EID EFLG +QTN + G+G+ RE L FD ++ +H Y I W P I
Sbjct: 97 EIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWFDPTQDYHNYAIYWTPSEI 156
Query: 142 QWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDAS 176
+ +D +RR R FP +P+++Y SVWDAS
Sbjct: 157 IFFVDDVPIRRYPRKSDATFPLRPLWVYGSVWDAS 191
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 113 GNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASV 172
G E++ LGFD S+GFH Y W P I+W +DG + A N P+ P + ++
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATAN----IPSTPGKIMMNL 57
Query: 173 WDASHIDKARWCGPYVGCDAPYV 195
W+ + +D W G Y G + Y
Sbjct: 58 WNGTGVDD--WLGSYNGANPLYA 78
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 46 ARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQT 105
A +RST + YG + ++ K +F Y G + DEID EFLGKD T VQ
Sbjct: 150 AEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQ-WDEIDIEFLGKDTTKVQF 208
Query: 106 NYYTTG 111
NYYT G
Sbjct: 209 NYYTNG 214
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 15/166 (9%)
Query: 45 GARWRSTTRFLYGTFSSLIQ--CPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTI 102
GA + + YG F + ++ G S + S + + E+D E LGK
Sbjct: 9 GAELYTLEEYQYGKFEARMKMAAASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGKSPGS 68
Query: 103 VQTNYYTTGTGNR---EEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGE 159
Q+N T G + E+ H + + FH Y ++W P+ ++W +DG+ VR+ E +
Sbjct: 69 FQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTEGGQVS 128
Query: 160 GFPNKPMFLYASVWDASHIDKARWCGPYVGCDAP------YVCLYK 199
+ ++W + + A W G + P +V +YK
Sbjct: 129 NLTGTQGLRF-NLWSS---ESAAWVGQFDESKLPLFQFINWVKVYK 170
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 15/166 (9%)
Query: 45 GARWRSTTRFLYGTFSSLIQ--CPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTI 102
GA + YG F + ++ G S + S + + E+D E LGK+
Sbjct: 7 GAELYTLEEVQYGKFEARMKMAAASGTVSSMILYQNGSEIADGRPWVEVDIEVLGKNPGS 66
Query: 103 VQTNYYTTGTGNR---EEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGE 159
Q+N T G + E+ H + + FH Y ++W P+ ++W +DG+ VR+ E +
Sbjct: 67 FQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTEGGQVS 126
Query: 160 GFPNKPMFLYASVWDASHIDKARWCGPYVGCDAP------YVCLYK 199
+ ++W + + A W G + P +V +YK
Sbjct: 127 NLTGTQGLRF-NLWSS---ESAAWVGQFDESKLPLFQFINWVKVYK 168
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 15/166 (9%)
Query: 45 GARWRSTTRFLYGTFSSLIQ--CPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTI 102
GA + YG F + ++ G S + S + + E+D E LGK+
Sbjct: 6 GAELYTLEEVQYGKFEARMKMAAASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGKNPGS 65
Query: 103 VQTNYYTTGTGNR---EEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGE 159
Q+N T G + E+ H + + FH Y ++W P+ ++W +DG+ VR+ E +
Sbjct: 66 FQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTEGGQVS 125
Query: 160 GFPNKPMFLYASVWDASHIDKARWCGPYVGCDAP------YVCLYK 199
+ ++W + + A W G + P +V +YK
Sbjct: 126 NLTGTQGLRF-NLWSS---ESAAWVGQFDESKLPLFQFINWVKVYK 167
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 90 EIDFEFLGKDKTIVQTNYYTTGTGNR---EEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 146
E+D E LGK+ Q+N T G + E+ H + + FH Y ++W P+ ++W +D
Sbjct: 56 EVDIEVLGKNPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVD 115
Query: 147 GKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAP------YVCLYK 199
G+ VR+ E + + ++W + + A W G + P +V +YK
Sbjct: 116 GQEVRKTEGGQVSNLTGTQGLRF-NLWSS---ESAAWVGQFDESKLPLFQFINWVKVYK 170
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 90 EIDFEFLGKDKTIVQTNYYTTGTGNR---EEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 146
E+D E LGK+ Q+N T G + E+ H + + FH Y ++W P+ ++W +D
Sbjct: 53 EVDIEVLGKNPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVD 112
Query: 147 GKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAP------YVCLYK 199
G+ VR+ E + + ++W + + A W G + P +V +YK
Sbjct: 113 GQEVRKTEGGQVSNLTGTQGLRF-NLWSS---ESAAWVGQFDESKLPLFQFINWVKVYK 167
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 15/166 (9%)
Query: 45 GARWRSTTRFLYGTFSSLIQ--CPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTI 102
GA + YG F + ++ G S + S + + E+D E LGK+
Sbjct: 7 GAELYTLEEVQYGKFEARMKMAAASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGKNPGS 66
Query: 103 VQTNYYTTGTGNRE---EIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGE 159
Q+N T G ++ + H + + FH Y ++W P+ ++W +DG+ VR+ E +
Sbjct: 67 FQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTEGGQVS 126
Query: 160 GFPNKPMFLYASVWDASHIDKARWCGPYVGCDAP------YVCLYK 199
+ ++W + + A W G + P +V +YK
Sbjct: 127 NLTGTQGLRF-NLWSS---ESAAWVGQFDESKLPLFQFINWVKVYK 168
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 56 YGTFSSLIQCPKGNTSGLNFNIYLSSLEGDK--SQDEID-FEFLGKDKTIVQTNYYTTGT 112
YG + IQ P+G F + S G S EID E +G + V + G
Sbjct: 83 YGRIEARIQIPRGQGIWPAFWMLGGSFPGTPWPSSGEIDIMENVGFEPHRVHGTVHGPGY 142
Query: 113 GNREEI-----HDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAER 155
I H G+ ++ FH + + W P I W +DG+ R R
Sbjct: 143 SGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITWFVDGQQFHRVTR 190
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 56 YGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQD--EID-FEFLGKDKTIVQTNYYTTGT 112
YG + IQ P+G F + + D EID E +G++ +V + + G
Sbjct: 87 YGRVEASIQIPRGQGIWPAFWMLGADFPNTPWPDSGEIDIMENIGREPHLVHGSLHGPGY 146
Query: 113 GNREEI-----HDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NK 164
E + H G+ ++ FH + + W P I W +DG + + G P ++
Sbjct: 147 FGGEPLTGSYMHPQGWSFADTFHTFAVDWRPGSITWSVDGVAYQTYTSADTRGNPWVFDQ 206
Query: 165 PMFLYASV 172
P F+ +V
Sbjct: 207 PFFMILNV 214
>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta
(I4122)
Length = 677
Score = 33.9 bits (76), Expect = 0.076, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 14/64 (21%)
Query: 94 EFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRA 153
E L + K V +Y++ GT L F+C GF ++ W P +QW GKV R
Sbjct: 194 ELLEQKKYTVTVDYWSFGT--------LAFECITGFRPFLPNWQP--VQW--HGKV--RE 239
Query: 154 ERNE 157
+ NE
Sbjct: 240 KSNE 243
>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|B Chain B, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|C Chain C, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|D Chain D, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|E Chain E, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|F Chain F, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|G Chain G, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|H Chain H, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
Length = 676
Score = 33.9 bits (76), Expect = 0.076, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 14/64 (21%)
Query: 94 EFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRA 153
E L + K V +Y++ GT L F+C GF ++ W P +QW GKV R
Sbjct: 193 ELLEQKKYTVTVDYWSFGT--------LAFECITGFRPFLPNWQP--VQW--HGKV--RE 238
Query: 154 ERNE 157
+ NE
Sbjct: 239 KSNE 242
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 124 DCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE-----GEGFPNKPMFLYASVWDASHI 178
D SE FH + I+W D ++W +DG++ ++E E + P FL +V +
Sbjct: 173 DFSEDFHIFSIEWDEDEVEWYVDGQLYHVLSKDELAELGLEWVFDHPFFLILNVAVGGY- 231
Query: 179 DKARWCG-PYVGCDAP------YVCLYKDIHVPVATAVE 210
W G P P Y+ +YKD++ T VE
Sbjct: 232 ----WPGYPDETTQFPQRMYIDYIRVYKDMNPETITGVE 266
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 63 IQCPKGNTSGLNFNIYLSSLE--GDKSQDEID-FEFLGKDKTIVQTNYYTTGTGNREEIH 119
I+ PKG F + S++ G + EID EFLG + + + G + I
Sbjct: 108 IKLPKGKGLWPAFWMLGSNIREVGWPNCGEIDIMEFLGHEPRTIHGTVHGPGYSGSKGIT 167
Query: 120 DLGF------DCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGE 159
D +E FH + I W PD I+W +DG + + E
Sbjct: 168 RAYTLPEGVPDFTEDFHVFGIVWYPDKIKWYVDGTFYHEVTKEQVE 213
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 124 DCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE 157
D SE FH + I+W D ++W +DG++ ++E
Sbjct: 181 DFSEDFHIFSIEWDEDEVEWYVDGQLYHVLSKDE 214
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
Query: 129 FHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPM 166
FH Y I+W P+ I+W +D + R FPN+ +
Sbjct: 167 FHVYAIEWTPEEIRWFVDDSLYYR--------FPNERL 196
>pdb|3DGT|A Chain A, The 1.5 A Crystal Structure Of Endo-1,3-Beta-Glucanase
From Streptomyces Sioyaensis
Length = 280
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 109 TTGTGNREEIHDLGFDCSEGFHEYVIKW----GPDLIQWLIDGKVVRRAERNE 157
T+G GN + C GFH Y ++W P+ I++ +DG + N+
Sbjct: 172 TSGIGNSTACPNT--TCQSGFHTYTMEWDRSVSPEAIRFSVDGVTYQTVTANQ 222
>pdb|2QC5|A Chain A, Streptogramin B Lyase Structure
Length = 300
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 6 VQSLHQTEPIKEIAIDYTPEACTHCADSNSIT-LTFDHRGGARWRSTTRFLYGTFSSLIQ 64
+ SL Q+ IKE + TP+A C +S+ + F G + ++ T L Q
Sbjct: 43 ISSLDQSGRIKEFEVP-TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQ 101
Query: 65 ---CPKGNTSGLNFNIYLSSLEGDK 86
P G T GLN +I+ + L GD+
Sbjct: 102 PDSGPYGITEGLNGDIWFTQLNGDR 126
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 119 HDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVV 150
+ L FD FH Y + D I W +DG++V
Sbjct: 182 YHLPFDPRNDFHTYGVNVTKDKITWYVDGEIV 213
>pdb|3I4X|A Chain A, Crystal Structure Of The Dimethylallyl Tryptophan Synthase
Fgapt2 From Aspergillus Fumigatus In Complex With Trp
And Dmspp
pdb|3I4X|B Chain B, Crystal Structure Of The Dimethylallyl Tryptophan Synthase
Fgapt2 From Aspergillus Fumigatus In Complex With Trp
And Dmspp
pdb|3I4Z|A Chain A, Crystal Structure Of The Dimethylallyl Tryptophan Synthase
Fgapt2 From Aspergillus Fumigatus
pdb|3I4Z|B Chain B, Crystal Structure Of The Dimethylallyl Tryptophan Synthase
Fgapt2 From Aspergillus Fumigatus
Length = 465
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 8 SLHQTEPIKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPK 67
+LHQ +P+ E + +T A ++++T F+ RG W R T S P
Sbjct: 338 TLHQNDPVPEPQVYFTTFGMNDMAVADALTTFFERRG---WSEMARTYETTLKSYY--PH 392
Query: 68 GNTSGLNF 75
+ LN+
Sbjct: 393 ADHDKLNY 400
>pdb|3PRT|A Chain A, Mutant Of The Carboxypeptidase T
Length = 323
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 45 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQ 104
G + + T + T+S LI P T + + D +QD+ + F T+ Q
Sbjct: 192 GGKQQIKTLITFHTYSELILYPYSYT--------YTDVPSDMTQDDFNV-FKTMANTMAQ 242
Query: 105 TNYYTTGTGNREEIHDLGFD 124
TN YT G+ I D G D
Sbjct: 243 TNGYTPQQGSDLYIADGGMD 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,627,738
Number of Sequences: 62578
Number of extensions: 350164
Number of successful extensions: 678
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 40
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)