Query 028023
Match_columns 215
No_of_seqs 163 out of 1308
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:04:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02176 GH16_XET Xyloglucan en 100.0 1.6E-47 3.5E-52 326.4 25.7 189 15-204 7-201 (263)
2 cd02183 GH16_fungal_CRH1_trans 100.0 4.9E-46 1.1E-50 307.7 25.1 183 16-206 8-202 (203)
3 cd02175 GH16_lichenase lichena 100.0 6.2E-44 1.4E-48 297.0 26.1 195 3-205 9-212 (212)
4 PLN03161 Probable xyloglucan e 100.0 2.1E-43 4.5E-48 303.2 23.6 184 17-204 30-221 (291)
5 cd08023 GH16_laminarinase_like 100.0 3.1E-38 6.6E-43 266.0 22.9 193 3-204 12-235 (235)
6 cd00413 Glyco_hydrolase_16 gly 100.0 8.1E-38 1.8E-42 258.3 24.4 189 3-204 9-210 (210)
7 cd02178 GH16_beta_agarase Beta 100.0 5.9E-38 1.3E-42 268.3 22.4 190 3-204 35-257 (258)
8 PF00722 Glyco_hydro_16: Glyco 100.0 2.3E-37 4.9E-42 251.1 20.0 174 15-202 2-185 (185)
9 cd02180 GH16_fungal_KRE6_gluca 100.0 4.4E-36 9.6E-41 260.4 20.6 195 3-204 18-294 (295)
10 cd02182 GH16_Strep_laminarinas 100.0 5.7E-35 1.2E-39 250.1 21.3 195 3-204 19-258 (259)
11 cd02177 GH16_kappa_carrageenas 100.0 2E-34 4.3E-39 247.3 22.6 192 3-204 24-268 (269)
12 cd08024 GH16_CCF Coelomic cyto 100.0 5.6E-33 1.2E-37 245.0 22.6 131 44-176 100-276 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 1.1E-32 2.3E-37 242.2 20.5 170 3-176 13-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 100.0 4.2E-28 9E-33 215.0 20.0 189 3-202 55-261 (355)
15 PF03935 SKN1: Beta-glucan syn 99.8 3.4E-19 7.5E-24 162.5 13.4 183 22-211 158-462 (504)
16 cd02181 GH16_fungal_Lam16A_glu 99.7 1.1E-16 2.4E-21 138.0 13.2 147 32-183 47-255 (293)
17 PF13385 Laminin_G_3: Concanav 94.3 1.6 3.5E-05 32.5 12.4 65 126-205 84-148 (157)
18 PF10287 DUF2401: Putative TOS 94.2 0.29 6.2E-06 41.4 8.0 79 58-139 102-207 (235)
19 PF06439 DUF1080: Domain of Un 93.3 0.6 1.3E-05 37.0 8.3 117 43-172 41-172 (185)
20 PF09264 Sial-lect-inser: Vibr 92.1 1.1 2.4E-05 36.7 8.0 27 127-153 92-120 (198)
21 smart00210 TSPN Thrombospondin 89.7 9.3 0.0002 30.7 16.5 30 125-154 115-144 (184)
22 smart00560 LamGL LamG-like jel 86.3 12 0.00027 28.2 11.6 28 126-153 60-89 (133)
23 KOG1834 Calsyntenin [Extracell 85.9 3.6 7.9E-05 39.8 7.8 56 125-187 440-495 (952)
24 smart00159 PTX Pentraxin / C-r 82.4 12 0.00025 30.8 8.7 73 125-205 88-162 (206)
25 cd00152 PTX Pentraxins are pla 80.5 30 0.00064 28.2 15.4 73 125-205 88-162 (201)
26 cd00110 LamG Laminin G domain; 76.3 29 0.00064 25.8 15.9 87 54-153 19-106 (151)
27 PF14099 Polysacc_lyase: Polys 75.2 44 0.00095 27.3 11.9 68 126-203 151-224 (224)
28 cd06482 ACD_HspB10 Alpha cryst 73.5 4.1 8.8E-05 29.1 3.0 47 22-68 19-65 (87)
29 cd06526 metazoan_ACD Alpha-cry 68.5 7.5 0.00016 27.0 3.4 44 22-68 18-61 (83)
30 cd06479 ACD_HspB7_like Alpha c 58.3 34 0.00074 23.9 5.3 41 22-68 19-59 (81)
31 PF10974 DUF2804: Protein of u 55.8 41 0.0009 29.8 6.6 57 13-69 249-316 (333)
32 PF00354 Pentaxin: Pentaxin fa 49.0 81 0.0018 25.7 6.9 71 125-203 82-154 (195)
33 cd06470 ACD_IbpA-B_like Alpha- 49.0 26 0.00057 24.7 3.5 47 22-68 22-71 (90)
34 smart00282 LamG Laminin G doma 47.6 36 0.00077 25.2 4.3 28 126-153 61-88 (135)
35 cd06464 ACD_sHsps-like Alpha-c 46.8 20 0.00043 24.3 2.5 47 22-68 18-67 (88)
36 cd06481 ACD_HspB9_like Alpha c 45.6 27 0.00058 24.6 3.1 47 22-68 18-65 (87)
37 PF06832 BiPBP_C: Penicillin-B 45.0 30 0.00065 24.2 3.3 34 139-172 43-77 (89)
38 COG0071 IbpA Molecular chapero 41.2 44 0.00094 25.8 3.9 48 22-69 61-112 (146)
39 PF02973 Sialidase: Sialidase, 40.8 1.6E+02 0.0035 24.2 7.3 70 127-205 103-174 (190)
40 KOG3516 Neurexin IV [Signal tr 39.8 4.8E+02 0.011 27.6 13.8 133 6-155 157-294 (1306)
41 PF00011 HSP20: Hsp20/alpha cr 32.1 31 0.00068 24.4 1.7 45 22-68 18-66 (102)
42 PF07691 PA14: PA14 domain; I 30.8 74 0.0016 23.6 3.7 29 126-155 58-86 (145)
43 cd01951 lectin_L-type legume l 27.9 3.3E+02 0.0072 22.1 12.5 115 33-149 28-178 (223)
44 cd06472 ACD_ScHsp26_like Alpha 27.3 1E+02 0.0022 21.5 3.7 46 22-68 20-71 (92)
45 PF12021 DUF3509: Protein of u 26.3 87 0.0019 22.7 3.1 24 22-45 11-36 (94)
46 cd06471 ACD_LpsHSP_like Group 25.5 73 0.0016 22.2 2.6 46 22-68 21-73 (93)
47 PF02210 Laminin_G_2: Laminin 24.2 2.6E+02 0.0056 19.6 9.6 31 125-155 52-82 (128)
48 cd06477 ACD_HspB3_Like Alpha c 23.8 2.1E+02 0.0045 20.0 4.7 44 22-68 18-61 (83)
49 smart00758 PA14 domain in bact 21.1 1.7E+02 0.0036 21.6 4.0 27 126-153 56-82 (136)
No 1
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=1.6e-47 Score=326.39 Aligned_cols=189 Identities=34% Similarity=0.600 Sum_probs=165.9
Q ss_pred CceeEEeCCCCCcccccCCCeEEEEEcCCCeeeEEEccceEeeEEEEEEEecCCCCceeEEEEeeecCCCCCCCCeeeEE
Q 028023 15 IKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFE 94 (215)
Q Consensus 15 ~~~~~~df~~~~~~~~~~~~~l~L~~~~~~ga~i~Sk~~~~YG~~Ear~K~p~g~~~G~~pAfwl~~~~~~~~~~EIDiE 94 (215)
...|.|.|++.|+++..+|..|.|+||+++|++|+||+.|+|||||+|||+|++.++|+||||||++.+ |+.++|||||
T Consensus 7 ~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~-wp~~~EID~E 85 (263)
T cd02176 7 DENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQG-PDNHDEIDFE 85 (263)
T ss_pred cccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCC-CCCCCeEEEE
Confidence 457889999999999877889999999999999999999999999999999998657999999999875 8889999999
Q ss_pred eeCCC---CceEEEEEEeCCCCCCceEEeCCcccCCccEEEEEEECCCcEEEEECCeEEEEEecCC--CCCCC-CCccEE
Q 028023 95 FLGKD---KTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE--GEGFP-NKPMFL 168 (215)
Q Consensus 95 ~~g~~---~~~~~~n~~~~~~~~~~~~~~~~~d~~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~~~--~~~~P-~~P~~l 168 (215)
++|++ ++.+|+|+|..+.+++++.+.++++++++||+|+|+|+|++|+|||||++++++.+.+ +..+| ++||+|
T Consensus 86 ~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l 165 (263)
T cd02176 86 FLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGV 165 (263)
T ss_pred EecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccceEEE
Confidence 99986 5789999999888778888888899999999999999999999999999999998643 46789 599999
Q ss_pred EEEeecCCCCCCCccccCCCCCCCCEEEEEeEEEEe
Q 028023 169 YASVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVP 204 (215)
Q Consensus 169 ~ln~W~~g~~~~g~W~G~~~~~~~p~~~~~~~v~v~ 204 (215)
++|+|+++++++..-....+.+.+||+|.|++++|.
T Consensus 166 ~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~ 201 (263)
T cd02176 166 YASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLD 201 (263)
T ss_pred EEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEe
Confidence 999998886442210113577999999999999995
No 2
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=4.9e-46 Score=307.72 Aligned_cols=183 Identities=31% Similarity=0.531 Sum_probs=156.3
Q ss_pred ceeEEeCCCCCcccccCCCeEEEEEcCC-CeeeEEEccceEeeEEEEEEEecCCCCceeEEEEeeecCCCCCCCCeeeEE
Q 028023 16 KEIAIDYTPEACTHCADSNSITLTFDHR-GGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFE 94 (215)
Q Consensus 16 ~~~~~df~~~~~~~~~~~~~l~L~~~~~-~ga~i~Sk~~~~YG~~Ear~K~p~g~~~G~~pAfwl~~~~~~~~~~EIDiE 94 (215)
+.+-..+..++|+.. +++|.|+|++. +|++|+|++.|+|||||||||+|.++ |+||||||++. ..+|||||
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g~--G~wpAfWl~~~----~~gEIDIE 79 (203)
T cd02183 8 SSYDWTVTSGTVDYD--DDGASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPGQ--GIVSSFVLQSD----DLDEIDWE 79 (203)
T ss_pred ccCccEecCCcEeEC--CCeEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCCC--eEEEEEEEECC----CCCEEEEE
Confidence 345566778999864 56799999987 79999999999999999999999986 99999999984 35899999
Q ss_pred eeCCCCceEEEEEEeCCCC---CCceEEeCCcccCCccEEEEEEECCCcEEEEECCeEEEEEecCC---CCCCCCCccEE
Q 028023 95 FLGKDKTIVQTNYYTTGTG---NREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE---GEGFPNKPMFL 168 (215)
Q Consensus 95 ~~g~~~~~~~~n~~~~~~~---~~~~~~~~~~d~~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~~~---~~~~P~~P~~l 168 (215)
++|+++..+++++|..+.. .+.+.+.++++.+++||+|+|||+|++|+|||||++++++++.+ +..+|++||+|
T Consensus 80 ~~G~~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~~P~~l 159 (203)
T cd02183 80 WVGGDLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQTPMRL 159 (203)
T ss_pred ecCCCCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCCCCcEE
Confidence 9999999999999976543 33455667777779999999999999999999999999998643 46799999999
Q ss_pred EEEeecCCCCC---C-CccccC-CCCCCCCEEEEEeEEEEecC
Q 028023 169 YASVWDASHID---K-ARWCGP-YVGCDAPYVCLYKDIHVPVA 206 (215)
Q Consensus 169 ~ln~W~~g~~~---~-g~W~G~-~~~~~~p~~~~~~~v~v~~~ 206 (215)
+||+|.+++.. | ..|+|+ +++..+|+.|+||+|||.|+
T Consensus 160 ~ln~W~gg~~~~~~g~~~WaGg~~d~~~~P~~~~vd~v~v~~~ 202 (203)
T cd02183 160 QIGIWAGGDPSNAPGTIEWAGGETDYDKGPFTMYVKSVTVTDY 202 (203)
T ss_pred EEEEecCCCccccCCcccCCCCccCCCCCCEEEEEEEEEEEeC
Confidence 99999988532 2 369986 56689999999999999996
No 3
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=6.2e-44 Score=297.03 Aligned_cols=195 Identities=30% Similarity=0.592 Sum_probs=164.6
Q ss_pred CcccccccCC-CCCceeEEeCCCCCcccccCCCeEEEEEcCC-------CeeeEEEccceEeeEEEEEEEecCCCCceeE
Q 028023 3 DPVVQSLHQT-EPIKEIAIDYTPEACTHCADSNSITLTFDHR-------GGARWRSTTRFLYGTFSSLIQCPKGNTSGLN 74 (215)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~df~~~~~~~~~~~~~l~L~~~~~-------~ga~i~Sk~~~~YG~~Ear~K~p~g~~~G~~ 74 (215)
|+..|+..++ .++.++.|.|++.||++. ++.|.|++.+. ++|+|.|+.+|+||+||||||+|.+. |+|
T Consensus 9 d~~~W~~~~~w~n~~~~~~~~~~~nv~v~--~g~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~~--G~~ 84 (212)
T cd02175 9 DTGRWYKSDGWSNGGPFNCTWSADNVEFS--DGGLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKGS--GVV 84 (212)
T ss_pred CccccEecCCccCCCcEeeeEccccEEEE--CCeEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCCC--eEE
Confidence 6788988653 456778899999999864 77899999753 48999999999999999999999875 999
Q ss_pred EEEeeecCC-CCCCCCeeeEEeeCCCCceEEEEEEeCCCCCCceEEeCCcccCCccEEEEEEECCCcEEEEECCeEEEEE
Q 028023 75 FNIYLSSLE-GDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRA 153 (215)
Q Consensus 75 pAfwl~~~~-~~~~~~EIDiE~~g~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~fH~Y~idWtp~~I~fyvDG~~v~~~ 153 (215)
|||||++.. ....++|||||++|+++..+++++|.++.......+.+++++.++||+|+|+|+|++|+|||||++++++
T Consensus 85 ~Afwl~~~~~~~~~~~EIDiE~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~ 164 (212)
T cd02175 85 SSFFTYTGPYDGDPHDEIDIEFLGKDTTKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEA 164 (212)
T ss_pred EEEEEEecCCCCCCCCEEEEEEccCCCCEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEE
Confidence 999999742 2234689999999999888898888766555555566677888899999999999999999999999999
Q ss_pred ecCCCCCCCCCccEEEEEeecCCCCCCCccccCCCCCCCCEEEEEeEEEEec
Q 028023 154 ERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVPV 205 (215)
Q Consensus 154 ~~~~~~~~P~~P~~l~ln~W~~g~~~~g~W~G~~~~~~~p~~~~~~~v~v~~ 205 (215)
...+ ..+|+.||+|+||+|.+++ .+.|+|.++. ..|+.|+||||||++
T Consensus 165 ~~~~-~~~p~~p~~i~~n~w~~~~--~~~W~G~~~~-~~p~~~~vd~vr~~~ 212 (212)
T cd02175 165 TATD-PNIPDTPGKIMMNLWPGDG--VDDWLGPFDG-GTPLTAEYDWVSYTP 212 (212)
T ss_pred cCcc-CCCCCCCcEEEEEEEcCCC--CCCcCCcCCC-CCCeEEEEEEEEEeC
Confidence 8643 3689999999999999875 2679998887 899999999999974
No 4
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=303.23 Aligned_cols=184 Identities=31% Similarity=0.583 Sum_probs=161.1
Q ss_pred eeEEeCCCCCcccccCCCeEEEEEcCCCeeeEEEccceEeeEEEEEEEecCCCCceeEEEEeeecCCCCCCCCeeeEEee
Q 028023 17 EIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFL 96 (215)
Q Consensus 17 ~~~~df~~~~~~~~~~~~~l~L~~~~~~ga~i~Sk~~~~YG~~Ear~K~p~g~~~G~~pAfwl~~~~~~~~~~EIDiE~~ 96 (215)
.|...|...++.+..+|+.|.|+||+.+|++++||+.|+||+||+|||+|+++++|+||||||++.. +.++|||||++
T Consensus 30 ~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~--~~~dEIDiEfL 107 (291)
T PLN03161 30 SMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTG--SRHDEIDFEFL 107 (291)
T ss_pred cceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCC--CCCCeEEEEec
Confidence 4667788899998777889999999999999999999999999999999988667999999999853 35799999999
Q ss_pred CCC---CceEEEEEEeCCCCCCceEEeCCcccCCccEEEEEEECCCcEEEEECCeEEEEEecCC--CCCCC-CCccEEEE
Q 028023 97 GKD---KTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE--GEGFP-NKPMFLYA 170 (215)
Q Consensus 97 g~~---~~~~~~n~~~~~~~~~~~~~~~~~d~~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~~~--~~~~P-~~P~~l~l 170 (215)
|++ ++++|+|+|.++.+.+++.+.+++|++++||+|+|+|+|++|+|||||++++++.+.+ +..+| ++||+|++
T Consensus 108 G~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~pM~i~~ 187 (291)
T PLN03161 108 GNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQGMRVYS 187 (291)
T ss_pred CCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCCccceEEEE
Confidence 975 5679999999888888888888899999999999999999999999999999987533 56799 57999999
Q ss_pred EeecCCCCCCCcccc--CCCCCCCCEEEEEeEEEEe
Q 028023 171 SVWDASHIDKARWCG--PYVGCDAPYVCLYKDIHVP 204 (215)
Q Consensus 171 n~W~~g~~~~g~W~G--~~~~~~~p~~~~~~~v~v~ 204 (215)
|+|+++++++.. | +.+++..||++.|+++++.
T Consensus 188 siW~g~~wAt~g--G~~kidw~~aPf~a~~~~f~~~ 221 (291)
T PLN03161 188 SLWNADNWATQG--GRVKIDWTLAPFVARGRRFRAR 221 (291)
T ss_pred eeecCCCcccCC--CceeccCCcCCeeEEeeeEEEE
Confidence 999998765321 3 2578999999999999995
No 5
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=3.1e-38 Score=266.00 Aligned_cols=193 Identities=22% Similarity=0.352 Sum_probs=155.0
Q ss_pred CcccccccCCCCCc----eeEEeCCCCCcccccCCCeEEEEEcCC----------CeeeEEE--ccceEeeEEEEEEEec
Q 028023 3 DPVVQSLHQTEPIK----EIAIDYTPEACTHCADSNSITLTFDHR----------GGARWRS--TTRFLYGTFSSLIQCP 66 (215)
Q Consensus 3 ~~~~~~~~~~~~~~----~~~~df~~~~~~~~~~~~~l~L~~~~~----------~ga~i~S--k~~~~YG~~Ear~K~p 66 (215)
|+..|+.+.+...- ...+.+++.|+++ +++.|.|+.... ++|+|.| ++.|+|||||||||+|
T Consensus 12 d~~~W~~~~~~~~~~~~~~~~~~~~~~nv~v--~~G~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~ 89 (235)
T cd08023 12 DPSKWTYETGGGGNGNNELQYYTYRPENAYV--EDGNLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLP 89 (235)
T ss_pred CcccCeEecCCCCCCcceeEEEeCCCCCeEE--ECCEEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEcc
Confidence 67788877665432 3568999999985 478899998642 4789999 8889999999999999
Q ss_pred CCCCceeEEEEeeecCCC----CCCCCeee-EEeeCCCCceEEEEEEeCCCC----CCceEEeCCc-ccCCccEEEEEEE
Q 028023 67 KGNTSGLNFNIYLSSLEG----DKSQDEID-FEFLGKDKTIVQTNYYTTGTG----NREEIHDLGF-DCSEGFHEYVIKW 136 (215)
Q Consensus 67 ~g~~~G~~pAfwl~~~~~----~~~~~EID-iE~~g~~~~~~~~n~~~~~~~----~~~~~~~~~~-d~~~~fH~Y~idW 136 (215)
.+. |+||||||++... |+..+||| ||+++.++..++.++|..+.. .....+..+. +..++||+|+++|
T Consensus 90 ~~~--G~~pafWl~~~~~~~~~w~~~~EIDI~E~~g~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W 167 (235)
T cd08023 90 KGQ--GTWPAFWMLGENIKYVGWPASGEIDIMEYVGNEPNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEW 167 (235)
T ss_pred CCC--CceeEEEEcCCCCCCCCCCCCCcceeEecCCCCCCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEE
Confidence 885 9999999998643 78899999 699999988899999977642 2233344443 5788999999999
Q ss_pred CCCcEEEEECCeEEEEEecCCCC---CCC-CCccEEEEEeecCCCCCCCccccCC-CCCCCCEEEEEeEEEEe
Q 028023 137 GPDLIQWLIDGKVVRRAERNEGE---GFP-NKPMFLYASVWDASHIDKARWCGPY-VGCDAPYVCLYKDIHVP 204 (215)
Q Consensus 137 tp~~I~fyvDG~~v~~~~~~~~~---~~P-~~P~~l~ln~W~~g~~~~g~W~G~~-~~~~~p~~~~~~~v~v~ 204 (215)
+|++|+|||||++++++...... .+| +.||+|+||++. +|.|+|.. .....|..|+||+|||+
T Consensus 168 ~p~~i~~yvDG~~v~~~~~~~~~~~~~~~~~~p~~liln~~~-----gg~w~g~~~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 168 TPDKITFYVDGKLYFTYTNPNTDNGGQWPFDQPFYLILNLAV-----GGNWPGPPDDDTPFPATMEVDYVRVY 235 (235)
T ss_pred ECCEEEEEECCEEEEEEcccccCCcccCCCCCCcEEEEEEEE-----cCCCCCCCCCCCCCCCEEEEEEEEEC
Confidence 99999999999999999864321 234 899999999954 45688873 45789999999999985
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=8.1e-38 Score=258.29 Aligned_cols=189 Identities=25% Similarity=0.392 Sum_probs=155.2
Q ss_pred CcccccccCCCCCceeEEeCCCCCcccccCCCeEEEEEcC------CCeeeEEE-ccceEeeEEEEEEEecCCCCceeEE
Q 028023 3 DPVVQSLHQTEPIKEIAIDYTPEACTHCADSNSITLTFDH------RGGARWRS-TTRFLYGTFSSLIQCPKGNTSGLNF 75 (215)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~l~L~~~~------~~ga~i~S-k~~~~YG~~Ear~K~p~g~~~G~~p 75 (215)
|+.-|+.+.+..... .+.|++.|+++.. ++.|.|++.+ .++|+|.| ++.|+|||||+|||+|.+. |+||
T Consensus 9 d~~~W~~~~~~~~~~-~~~~~~~nv~~~~-~G~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~~--G~~~ 84 (210)
T cd00413 9 DTSKWTIQDGPSWGG-NMTNSPNNVYVEN-DGGLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGGP--GAVS 84 (210)
T ss_pred CcccCEEecCCCCCc-eEEECccCEEEeC-CCeEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCCC--ceEE
Confidence 566788887754433 7899999998643 3789999975 35899999 9999999999999999875 9999
Q ss_pred EEeeecCCC-CCCCCeeeEEeeCCCCceEEEEEEeCCCCC-----CceEEeCCcccCCccEEEEEEECCCcEEEEECCeE
Q 028023 76 NIYLSSLEG-DKSQDEIDFEFLGKDKTIVQTNYYTTGTGN-----REEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKV 149 (215)
Q Consensus 76 Afwl~~~~~-~~~~~EIDiE~~g~~~~~~~~n~~~~~~~~-----~~~~~~~~~d~~~~fH~Y~idWtp~~I~fyvDG~~ 149 (215)
||||++.+. ++..+|||||+++.++..++.++|...... .......+++..++||+|+|+|+|++|+|||||++
T Consensus 85 afw~~~~~~~~~~~~EIDiE~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~ 164 (210)
T cd00413 85 AFWTYSDDDDPPDGGEIDIEFLGRDPTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVL 164 (210)
T ss_pred EEEEeCCCCCCCCCCeEEEEecccCCCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEE
Confidence 999998653 578999999999998888899998765431 22334445557889999999999999999999999
Q ss_pred EEEEecCCCCCCCCCccEEEEEeecCCCCCCCccccCCCCCCCCEEEEEeEEEEe
Q 028023 150 VRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVP 204 (215)
Q Consensus 150 v~~~~~~~~~~~P~~P~~l~ln~W~~g~~~~g~W~G~~~~~~~p~~~~~~~v~v~ 204 (215)
++++.. .+|++||+|+||+|.+++ |++.......|..|+||||||.
T Consensus 165 ~~~~~~----~~p~~p~~i~ln~~~~~~-----~~~~~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 165 VATITN----QVPDDPMNIILNLWSDGG-----WWWGGPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred EEEECC----CCCCCCcEEEEEEEECCC-----CcccCCCCCCCcEEEEEEEEEC
Confidence 999875 488999999999987764 5554455788999999999984
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=5.9e-38 Score=268.34 Aligned_cols=190 Identities=20% Similarity=0.307 Sum_probs=144.1
Q ss_pred CcccccccCCC-CCceeEEeCCCCCcccccCCCeEEEEEcCC-----------CeeeEEEccceEeeEEEEEEEecCCCC
Q 028023 3 DPVVQSLHQTE-PIKEIAIDYTPEACTHCADSNSITLTFDHR-----------GGARWRSTTRFLYGTFSSLIQCPKGNT 70 (215)
Q Consensus 3 ~~~~~~~~~~~-~~~~~~~df~~~~~~~~~~~~~l~L~~~~~-----------~ga~i~Sk~~~~YG~~Ear~K~p~g~~ 70 (215)
|+..|+.+... -...-.+-|.+.|+++ +++.|.|++.+. ++|+|.|++.|+|||||||||+|.+
T Consensus 35 d~~~W~~~~~~~w~~~~~~~y~~~nv~v--~~G~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~-- 110 (258)
T cd02178 35 DTSKWNPNNPNGWTGRGPTEFSADNVSV--EDGNLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL-- 110 (258)
T ss_pred ccccCCCCCCCCCCCCcCceEccCCeEE--ECCEEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--
Confidence 66788876511 1111234467899974 578999998643 4789999999999999999999976
Q ss_pred ceeEEEEeeecCCCCCCCCeee-EEeeCCC-----CceEEEEEEeCCCC---C--C---ceEEeCCcccCCccEEEEEEE
Q 028023 71 SGLNFNIYLSSLEGDKSQDEID-FEFLGKD-----KTIVQTNYYTTGTG---N--R---EEIHDLGFDCSEGFHEYVIKW 136 (215)
Q Consensus 71 ~G~~pAfwl~~~~~~~~~~EID-iE~~g~~-----~~~~~~n~~~~~~~---~--~---~~~~~~~~d~~~~fH~Y~idW 136 (215)
+++|||||++.+ ++.++||| ||++|.+ ...+++++|..... + . ......+.++.++||+|+|+|
T Consensus 111 -~~~pAfW~~~~~-~~~~gEIDI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW 188 (258)
T cd02178 111 -PMSSAFWLLSDT-KDSTTEIDILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYW 188 (258)
T ss_pred -CccceEEEccCC-CCCCCcEEhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEE
Confidence 358999999865 56799999 8999987 35678887753321 1 1 122334456778999999999
Q ss_pred C-CCcEEEEECCeEEEEEecCC-CCCCC-CCccEEEEEeecCCCCCCCccccC---C-CCCCCCEEEEEeEEEEe
Q 028023 137 G-PDLIQWLIDGKVVRRAERNE-GEGFP-NKPMFLYASVWDASHIDKARWCGP---Y-VGCDAPYVCLYKDIHVP 204 (215)
Q Consensus 137 t-p~~I~fyvDG~~v~~~~~~~-~~~~P-~~P~~l~ln~W~~g~~~~g~W~G~---~-~~~~~p~~~~~~~v~v~ 204 (215)
+ |++|+|||||+++++++..+ ...+| ++||+||||+ ++++ |+|. . ....+|..|+||||||+
T Consensus 189 ~~p~~i~fyvDG~~~~~~~~~~~~~~~~f~~p~~liln~-----avg~-w~g~~~~~~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 189 KDPDTIRFYIDGVLVRTVENSEITDGTGFDQPMYIIIDT-----ETYD-WRGEPTDEELADDSKNTFYVDYVRVY 257 (258)
T ss_pred cCCCeEEEEECCEEEEEEcCcccCcCCcCCCCeEEEEEe-----cccc-CCCCCCccccCCCCCCeEEEEEEEEe
Confidence 9 99999999999999998633 22345 8999999999 6666 8883 2 33568999999999996
No 8
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=2.3e-37 Score=251.13 Aligned_cols=174 Identities=33% Similarity=0.562 Sum_probs=145.8
Q ss_pred CceeEEeCCCCCcccccCCCeEEEEEcC-----CCeeeEEEccceEeeEEEEEEEecCCCCceeEEEEeeecCCCCCCCC
Q 028023 15 IKEIAIDYTPEACTHCADSNSITLTFDH-----RGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQD 89 (215)
Q Consensus 15 ~~~~~~df~~~~~~~~~~~~~l~L~~~~-----~~ga~i~Sk~~~~YG~~Ear~K~p~g~~~G~~pAfwl~~~~~~~~~~ 89 (215)
..++.|.|+++||++. +|+.|.|++++ .+||+|+|+..++|||||||||++.+. |++|||||.+..+|+..+
T Consensus 2 ~~~~~~~~~~~nv~~~-~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~~--G~~~afwl~~~~~~~~~~ 78 (185)
T PF00722_consen 2 GDQYNCTWSPDNVTVE-DGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPGP--GVWPAFWLTGADGWPDGG 78 (185)
T ss_dssp CCTEEEEETCCGEEEE-TTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCST--TEEEEEEEETTGSTTTTE
T ss_pred CCceEEeeCCCcEEEc-CCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCCC--ceEecccccccccccchh
Confidence 4678999999999963 34699999998 679999999999999999999998875 999999997643488999
Q ss_pred eeeEEeeCCCCceEEEEEEeCCCCCC--ceEEeCCcccCCccEEEEEEECCCcEEEEECCeEEEEEecCCC--CCCCC-C
Q 028023 90 EIDFEFLGKDKTIVQTNYYTTGTGNR--EEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEG--EGFPN-K 164 (215)
Q Consensus 90 EIDiE~~g~~~~~~~~n~~~~~~~~~--~~~~~~~~d~~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~~~~--~~~P~-~ 164 (215)
|||||++|+++..+++++|..+.+.. ...+.+..+..++||+|+|+|+|++|+|||||++++++..... ..+|. .
T Consensus 79 EIDiE~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~~~ 158 (185)
T PF00722_consen 79 EIDIEFLGNDPTQVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPFST 158 (185)
T ss_dssp EEEEEEETTSTTEEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSEEE
T ss_pred hhhhhhccccccceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcccc
Confidence 99999999999999999998776554 3445666778899999999999999999999999999987532 24785 8
Q ss_pred ccEEEEEeecCCCCCCCccccCCCCCCCCEEEEEeEEE
Q 028023 165 PMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIH 202 (215)
Q Consensus 165 P~~l~ln~W~~g~~~~g~W~G~~~~~~~p~~~~~~~v~ 202 (215)
||++.|++|.+++ |.+.. -.|+|||||
T Consensus 159 ~~~~~~~~w~~~~-----~~~~~------~~m~vDwvr 185 (185)
T PF00722_consen 159 PMNLALGLWPGGD-----WAGPA------GEMEVDWVR 185 (185)
T ss_dssp EEEEEEEECEBTT-----THSSE------CEEEEEEEE
T ss_pred eeEEEEccccCCC-----CCCCC------CEEEEEeEC
Confidence 8999999977763 32221 199999998
No 9
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=4.4e-36 Score=260.38 Aligned_cols=195 Identities=18% Similarity=0.177 Sum_probs=139.6
Q ss_pred CcccccccCCCC-CceeEEeCCCCCcccccCCCeEEEEEcC-------CCeeeEEE--ccceEeeEEEEEEEecCC-CCc
Q 028023 3 DPVVQSLHQTEP-IKEIAIDYTPEACTHCADSNSITLTFDH-------RGGARWRS--TTRFLYGTFSSLIQCPKG-NTS 71 (215)
Q Consensus 3 ~~~~~~~~~~~~-~~~~~~df~~~~~~~~~~~~~l~L~~~~-------~~ga~i~S--k~~~~YG~~Ear~K~p~g-~~~ 71 (215)
|+..|++..+.. .......|+++|+. .+++.|.|+..+ .++|+|.| |+.|+|||||||||||.+ .+.
T Consensus 18 d~~~W~~~~~~~wgn~e~q~Y~~~nv~--v~~G~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~ 95 (295)
T cd02180 18 DDPFWEAVDLHYWATNDLEWYDPDAVT--TINGSLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVS 95 (295)
T ss_pred CCcccEEeeCCCCCCCCeEEecCcCeE--ecCCeEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCC
Confidence 566788643322 12233467889986 468899999864 36899999 677999999999999974 134
Q ss_pred eeEEEEeeecCC-----------CCCC------CCeee-EEeeCCCC---ceEEEE--------------------EEeC
Q 028023 72 GLNFNIYLSSLE-----------GDKS------QDEID-FEFLGKDK---TIVQTN--------------------YYTT 110 (215)
Q Consensus 72 G~~pAfwl~~~~-----------~~~~------~~EID-iE~~g~~~---~~~~~n--------------------~~~~ 110 (215)
|+||||||++.. +||. ++||| ||.++.+. ..+... +|..
T Consensus 96 G~WPAfWmlg~~~~~~~~~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 175 (295)
T cd02180 96 GLWPAVWTMGNLGRPGYLATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYND 175 (295)
T ss_pred CcceeeecccccccccccccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecC
Confidence 999999999842 4885 49999 99998654 112111 1211
Q ss_pred C----C---CCCce-EE----eCCc----ccCCccEEEEEEECC-----CcEEEEECCeEEEEEecCC----C----CCC
Q 028023 111 G----T---GNREE-IH----DLGF----DCSEGFHEYVIKWGP-----DLIQWLIDGKVVRRAERNE----G----EGF 161 (215)
Q Consensus 111 ~----~---~~~~~-~~----~~~~----d~~~~fH~Y~idWtp-----~~I~fyvDG~~v~~~~~~~----~----~~~ 161 (215)
. + ++..+ .. .++. ...++||+|+|||+| ++|+|||||++++++..++ . ..+
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~ 255 (295)
T cd02180 176 TTTIMNTYTGGVFQQAISCVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRII 255 (295)
T ss_pred cccccccccCCccccccccccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCccccccccc
Confidence 0 0 00000 00 1111 135789999999999 8999999999999998642 1 235
Q ss_pred CCCccEEEEEeecCCCCCCCccccCC-CCCCCCEEEEEeEEEEe
Q 028023 162 PNKPMFLYASVWDASHIDKARWCGPY-VGCDAPYVCLYKDIHVP 204 (215)
Q Consensus 162 P~~P~~l~ln~W~~g~~~~g~W~G~~-~~~~~p~~~~~~~v~v~ 204 (215)
|++||+||||+ |+||.|+|.. +....|..|+||||||+
T Consensus 256 ~~~P~ylILNl-----AvGg~w~g~~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 256 PEEPMYIILNL-----GISSNFQDIDWDELQFPATMRIDYVRVY 294 (295)
T ss_pred CCCCeEEEEEE-----EeccccCCCCcccCCCCCEEEEEEEEEE
Confidence 79999999999 7888899865 35789999999999996
No 10
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=100.00 E-value=5.7e-35 Score=250.06 Aligned_cols=195 Identities=15% Similarity=0.164 Sum_probs=140.6
Q ss_pred CcccccccCCC-----CCceeEEeCCCCCcccccCCCeEEEEEcC-----CCeeeEEEccce--Ee----eEEEEEEEec
Q 028023 3 DPVVQSLHQTE-----PIKEIAIDYTPEACTHCADSNSITLTFDH-----RGGARWRSTTRF--LY----GTFSSLIQCP 66 (215)
Q Consensus 3 ~~~~~~~~~~~-----~~~~~~~df~~~~~~~~~~~~~l~L~~~~-----~~ga~i~Sk~~~--~Y----G~~Ear~K~p 66 (215)
|+..|+...+. +..-..+.-++.|+.+. .++.|.|+..+ .++|+|.|+..+ +| ||||||||+|
T Consensus 19 d~~~W~~~~~~~~~~~n~e~q~y~~~~~n~~v~-~dG~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p 97 (259)
T cd02182 19 SSSKWIIDTGTSANWGTGEIQTYTNSTANVQLS-GNGTLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLG 97 (259)
T ss_pred CcCcCEEecCCCCCCCCceeEeecCCCcCEEEc-CCCeEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECC
Confidence 67788876544 23333456678899753 37799999854 468899998654 43 4899999999
Q ss_pred CCC---CceeEEEEeeecCC------CCCCCCeee-EEeeCCCCceEEEEEEeCCC-C-CCceEEeC--C-cccCCccEE
Q 028023 67 KGN---TSGLNFNIYLSSLE------GDKSQDEID-FEFLGKDKTIVQTNYYTTGT-G-NREEIHDL--G-FDCSEGFHE 131 (215)
Q Consensus 67 ~g~---~~G~~pAfwl~~~~------~~~~~~EID-iE~~g~~~~~~~~n~~~~~~-~-~~~~~~~~--~-~d~~~~fH~ 131 (215)
.+. +.|+||||||++.+ +||.++||| ||.++.++...+ ++|.... . ........ . ....++||+
T Consensus 98 ~~~~~~~~G~wPAfWll~~~~~~~~~~WP~~GEIDImE~~~~~~~~~~-t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHt 176 (259)
T cd02182 98 DVPGSNQQGIWPAFWMLGDSYRGNGTNWPACGELDIMENVNGLSTGYG-TLHCGVAPGGPCNEPTGIGAGTRLCDTGFHT 176 (259)
T ss_pred CCcccCCCCcCeeeeccCCCccCCCCCCCccceeeeeeccCCCCceEE-EEeeCCCCCCCCccccCcccCCCCCCCCcEE
Confidence 842 35999999999853 599999999 899988765544 4554321 1 11111111 1 123579999
Q ss_pred EEEEECC-----CcEEEEECCeEEEEEecCC---CC---CCCCCccEEEEEeecCCCCCCCccccCCCC---CCCCEEEE
Q 028023 132 YVIKWGP-----DLIQWLIDGKVVRRAERNE---GE---GFPNKPMFLYASVWDASHIDKARWCGPYVG---CDAPYVCL 197 (215)
Q Consensus 132 Y~idWtp-----~~I~fyvDG~~v~~~~~~~---~~---~~P~~P~~l~ln~W~~g~~~~g~W~G~~~~---~~~p~~~~ 197 (215)
|+|||+| ++|+|||||+++++++..+ .. ..|++||+||||+ +++|.|+|.++. ...|..|+
T Consensus 177 Y~veW~~~~~~~~~I~~yvDG~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~-----avgg~w~~~~~~~~~~~~p~~m~ 251 (259)
T cd02182 177 YAVEIDRTNGDAESIRWYLDGVVYHTVTGARVGDETTWQALAHHPLFIILNV-----AVGGNWPGAPNGNTATGSGSAME 251 (259)
T ss_pred EEEEEccCCCCCCEEEEEECCEEEEEEehhhcCCCccccCcCCCCeEEEEEE-----EEeCCcCCCCCcccccCCCceEE
Confidence 9999997 9999999999999997631 11 2458999999999 666678887753 45799999
Q ss_pred EeEEEEe
Q 028023 198 YKDIHVP 204 (215)
Q Consensus 198 ~~~v~v~ 204 (215)
||||||+
T Consensus 252 VDyVRVy 258 (259)
T cd02182 252 VDYVAVY 258 (259)
T ss_pred EEEEEEe
Confidence 9999996
No 11
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=100.00 E-value=2e-34 Score=247.26 Aligned_cols=192 Identities=21% Similarity=0.190 Sum_probs=137.3
Q ss_pred CcccccccCCCCCceeEEeCCCCCcccccCCCeEEEEEcC-------------------CCeeeEEEccceEeeEEEEEE
Q 028023 3 DPVVQSLHQTEPIKEIAIDYTPEACTHCADSNSITLTFDH-------------------RGGARWRSTTRFLYGTFSSLI 63 (215)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~l~L~~~~-------------------~~ga~i~Sk~~~~YG~~Ear~ 63 (215)
|+..|+...+... .. ..+.+.|+. .++|.|.|+..+ +++|++.|+..|+||||||||
T Consensus 24 D~~kW~~~~~~~~-~w-~~~~~~Nv~--v~dG~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRi 99 (269)
T cd02177 24 DWAKWNKTGENTG-AW-KWNNEKNVV--ISNGILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARI 99 (269)
T ss_pred CcccceecCCCcc-CC-CCCCccceE--EeCCEEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEE
Confidence 5677876543211 01 134567886 568899999864 257899999999999999999
Q ss_pred EecC-CCCceeEEEEeeecC-------CCCCCCCeee-EEeeCCC------Cce----EEEEEEeCCCCC--C-------
Q 028023 64 QCPK-GNTSGLNFNIYLSSL-------EGDKSQDEID-FEFLGKD------KTI----VQTNYYTTGTGN--R------- 115 (215)
Q Consensus 64 K~p~-g~~~G~~pAfwl~~~-------~~~~~~~EID-iE~~g~~------~~~----~~~n~~~~~~~~--~------- 115 (215)
|+++ + .|+||||||++. .+||.++||| ||.++.+ +.. +|..++..+.+. +
T Consensus 100 k~~p~~--~G~wpAfW~~~~~~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~ 177 (269)
T cd02177 100 KGADIF--PGVCPSFWLYSDIDYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPT 177 (269)
T ss_pred ECCCCC--CceEeEEEEeccCCCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccc
Confidence 9865 5 499999999985 2589999999 7888754 233 333333333221 1
Q ss_pred -ceEEeCCcccCCccEEEEEEECCCcEEEEECCeEEEEEecCCCCCCCCCccEEEEEeecCCCC----CCCccccCCC-C
Q 028023 116 -EEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHI----DKARWCGPYV-G 189 (215)
Q Consensus 116 -~~~~~~~~d~~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~~~~~~~P~~P~~l~ln~W~~g~~----~~g~W~G~~~-~ 189 (215)
...+.+++++.++||+|+|+|+|++|+|||||++++++.. .+...||.+.+++=..... -...|+|... .
T Consensus 178 ~~~~~~~~~d~~~~fH~y~v~W~~~~i~~yvDg~~~~~~~~----~~w~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 253 (269)
T cd02177 178 EQLNYHRPFDPSKDFHTYGCNVNQDEIIWYVDGVEVGRKPN----KYWHRPMNVTLSLGLRKPFVKFFDNKNNAKAREKA 253 (269)
T ss_pred cceEEccCCCCccCcEEEEEEEeCCEEEEEECCEEEEEEcC----CccccccEEeeccccCcchhhhhccccCCCCCCcc
Confidence 1123345678899999999999999999999999999875 4557888888887222110 0135777654 3
Q ss_pred CCCCEEEEEeEEEEe
Q 028023 190 CDAPYVCLYKDIHVP 204 (215)
Q Consensus 190 ~~~p~~~~~~~v~v~ 204 (215)
..+|..|+||||||.
T Consensus 254 ~~fP~~m~VDyVRv~ 268 (269)
T cd02177 254 SDFPTSMYVDYVRVW 268 (269)
T ss_pred CcCCceEEEEEEEEe
Confidence 789999999999995
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=100.00 E-value=5.6e-33 Score=245.00 Aligned_cols=131 Identities=24% Similarity=0.387 Sum_probs=101.2
Q ss_pred CeeeEEE--ccceEeeEEEEEEEecCCCCceeEEEEeeecCC----CCCCCCeee-EEeeCCCCc----------eEEEE
Q 028023 44 GGARWRS--TTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLE----GDKSQDEID-FEFLGKDKT----------IVQTN 106 (215)
Q Consensus 44 ~ga~i~S--k~~~~YG~~Ear~K~p~g~~~G~~pAfwl~~~~----~~~~~~EID-iE~~g~~~~----------~~~~n 106 (215)
++|+|.| |+.|+|||||||||||.++ |+||||||+|.+ +||.++||| ||.+|+.+. .++.+
T Consensus 100 ~Sgri~T~~kf~f~YGrvE~RaKlP~G~--g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~t 177 (330)
T cd08024 100 MSARLRTKNSFSFKYGRVEVRAKLPTGD--WLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGST 177 (330)
T ss_pred EEEEEEeCCccceeceEEEEEEECCCCC--ccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEE
Confidence 5789999 5779999999999999987 999999999853 599999999 899987642 35666
Q ss_pred EEeCCCCC----Cc---eEEeCCcccCCccEEEEEEECCCcEEEEECCeEEEEEecC----------------C-----C
Q 028023 107 YYTTGTGN----RE---EIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERN----------------E-----G 158 (215)
Q Consensus 107 ~~~~~~~~----~~---~~~~~~~d~~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~~----------------~-----~ 158 (215)
+|...... .. .......++.++||+|+|+|+|++|+|||||++++++... + .
T Consensus 178 lH~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~ 257 (330)
T cd08024 178 LHWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGG 257 (330)
T ss_pred EEeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccC
Confidence 77532211 11 1111233567899999999999999999999999999852 0 1
Q ss_pred CCCC-CCccEEEEEeecCC
Q 028023 159 EGFP-NKPMFLYASVWDAS 176 (215)
Q Consensus 159 ~~~P-~~P~~l~ln~W~~g 176 (215)
...| ++|+|||||+.+||
T Consensus 258 ~~aPFd~~fyliLNvAVGG 276 (330)
T cd08024 258 KMAPFDQEFYLILNVAVGG 276 (330)
T ss_pred cCCCCCCCEEEEEEEEecC
Confidence 3457 89999999994444
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=100.00 E-value=1.1e-32 Score=242.21 Aligned_cols=170 Identities=21% Similarity=0.258 Sum_probs=121.0
Q ss_pred Cccccccc---CCCCCceeEEe-CCCCCcccccCCCeEEEEEcC------------------------------------
Q 028023 3 DPVVQSLH---QTEPIKEIAID-YTPEACTHCADSNSITLTFDH------------------------------------ 42 (215)
Q Consensus 3 ~~~~~~~~---~~~~~~~~~~d-f~~~~~~~~~~~~~l~L~~~~------------------------------------ 42 (215)
|+.+|+.- .+.+..+|.+- =++.|+. ..++.|.|+...
T Consensus 13 d~~~W~~e~~~~g~gn~Efq~Yt~~~~N~~--v~dG~L~I~p~~~~~~~~~~~~~~~~~~~~~cT~~~~~~~C~~~~~~~ 90 (321)
T cd02179 13 DLNKWTIEVRFPGEPDYEFVVYDDAPENLF--VKDGNLVIEPTLLEEKFGEGFVREGLDLLERCTGQLGTTECRRDARGS 90 (321)
T ss_pred CcccCeeeccCCCCCcCceEEecCCCCceE--EeCCeEEEEEeecccccCcccccccccccccccccccccccccccccc
Confidence 66778775 23344555532 1477875 457889997632
Q ss_pred -----CCeeeEEEc--cceEeeEEEEEEEecCCCCceeEEEEeeecCC----CC-CCCCeee-EEeeCCCCc------eE
Q 028023 43 -----RGGARWRST--TRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLE----GD-KSQDEID-FEFLGKDKT------IV 103 (215)
Q Consensus 43 -----~~ga~i~Sk--~~~~YG~~Ear~K~p~g~~~G~~pAfwl~~~~----~~-~~~~EID-iE~~g~~~~------~~ 103 (215)
.++|+|.|+ +.|+|||||+|||||.|+ |+||||||+|.+ .| |.+|||| ||.+|+.+. ..
T Consensus 91 ~i~~P~~Sari~Tk~~f~f~YGrvEvRAKlP~Gd--glWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~ 168 (321)
T cd02179 91 SILPPVVSARINTKNSFAFKYGRVEIRAKLPKGD--WIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIG 168 (321)
T ss_pred ccCCCeeeeeEEECCcEeEeccEEEEEEEccCCC--CcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceec
Confidence 247899995 679999999999999987 999999999863 24 7899999 899998632 11
Q ss_pred EEEEEeCCC----C-CCce---EEeCCcccCCccEEEEEEECCCcEEEEECCeEEEEEecCC------------------
Q 028023 104 QTNYYTTGT----G-NREE---IHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE------------------ 157 (215)
Q Consensus 104 ~~n~~~~~~----~-~~~~---~~~~~~d~~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~~~------------------ 157 (215)
...+|.... . .+.. ......++.++||+|+|+|+|++|+|||||+++++++...
T Consensus 169 ~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g 248 (321)
T cd02179 169 GKKLYGGPVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGG 248 (321)
T ss_pred cceEEcccccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCcccccc
Confidence 222232211 1 0110 1111235778999999999999999999999999998632
Q ss_pred CCCCC-CCccEEEEEeecCC
Q 028023 158 GEGFP-NKPMFLYASVWDAS 176 (215)
Q Consensus 158 ~~~~P-~~P~~l~ln~W~~g 176 (215)
....| ++|+||+||+.+||
T Consensus 249 ~~~aPFD~~FyliLNlAVGG 268 (321)
T cd02179 249 TVMAPFDKEFYLSLGVGVGG 268 (321)
T ss_pred CccCCCCCCeEEEEEEEecC
Confidence 12357 89999999997776
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=4.2e-28 Score=214.99 Aligned_cols=189 Identities=23% Similarity=0.358 Sum_probs=152.6
Q ss_pred CcccccccCCC-CC-ceeEEeCCCCCcccccCCCeEEEEEcC-------CCeeeEEEccc--eEeeEEEEEEEecCCCCc
Q 028023 3 DPVVQSLHQTE-PI-KEIAIDYTPEACTHCADSNSITLTFDH-------RGGARWRSTTR--FLYGTFSSLIQCPKGNTS 71 (215)
Q Consensus 3 ~~~~~~~~~~~-~~-~~~~~df~~~~~~~~~~~~~l~L~~~~-------~~ga~i~Sk~~--~~YG~~Ear~K~p~g~~~ 71 (215)
|..+|..+.+= .+ ....|.|...+..+ ..++.|.|.+++ +++++++|..+ |+||++|+|||+|.+.
T Consensus 55 de~~w~~~~~~~~g~~~~~~~w~~~~~~l-t~~~~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~~-- 131 (355)
T COG2273 55 DEFNWYVNPGYSDGIATKNLTWYVSNVVL-TIGGTLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLVS-- 131 (355)
T ss_pred cccccccCCcccCcccccccceeecceeE-eeCCeeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCCc--
Confidence 56677777776 44 68889999999987 457789999875 57899999877 8999999999999775
Q ss_pred eeEEEEeeecC---C-CCCCCCeeeEEeeCCCCce--EEEEEEeCCCCCCceEEeCCc-ccCCccEEEEEEECCCcEEEE
Q 028023 72 GLNFNIYLSSL---E-GDKSQDEIDFEFLGKDKTI--VQTNYYTTGTGNREEIHDLGF-DCSEGFHEYVIKWGPDLIQWL 144 (215)
Q Consensus 72 G~~pAfwl~~~---~-~~~~~~EIDiE~~g~~~~~--~~~n~~~~~~~~~~~~~~~~~-d~~~~fH~Y~idWtp~~I~fy 144 (215)
|+||||||++. + .| ..|||+|++|++... ++++++..+.++.+....++. +..++||+|+++|.+++|+||
T Consensus 132 G~wpafw~~~g~~~dg~w--p~e~d~e~lgg~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wy 209 (355)
T COG2273 132 GLWPAFWTLTGLSRDGGW--PDEIDIEDLGGQSTNTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWY 209 (355)
T ss_pred ccceeeEeccCcccCCCC--CcceeeeeecCCCcccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEE
Confidence 99999999985 3 34 479999999988655 999999887766655555555 778899999999999999999
Q ss_pred ECCeEEEEEecCCCCCCCCCccEEEEEeecCCCCCCCccccCCCCCCCCEEEEEeEEE
Q 028023 145 IDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIH 202 (215)
Q Consensus 145 vDG~~v~~~~~~~~~~~P~~P~~l~ln~W~~g~~~~g~W~G~~~~~~~p~~~~~~~v~ 202 (215)
|||++++++... ..+|..|+++++|+|.++.+ +.|.|...... -.|.+++++
T Consensus 210 vdg~~~~~~~~p--~~~~~~p~y~~~nl~~~~~~--~~~~~~~~~~~--~~~~~~~~~ 261 (355)
T COG2273 210 VDGAPVATATKP--DYIPQIPFYVLVNLWMGGYA--GGPPGEALSAG--SPLNIDYYR 261 (355)
T ss_pred EcceEeeEEecc--ccCcCCcceeEEeecccCcc--CCCccccccCC--cceEeeeee
Confidence 999999999864 35699999999999988865 67777664333 345555555
No 15
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.81 E-value=3.4e-19 Score=162.48 Aligned_cols=183 Identities=21% Similarity=0.300 Sum_probs=121.8
Q ss_pred CCCCCcccccCCCeEEEEEcC-------CCeeeEEE--ccceEeeEEEEEEEecCC-CCceeEEEEeeecC---------
Q 028023 22 YTPEACTHCADSNSITLTFDH-------RGGARWRS--TTRFLYGTFSSLIQCPKG-NTSGLNFNIYLSSL--------- 82 (215)
Q Consensus 22 f~~~~~~~~~~~~~l~L~~~~-------~~ga~i~S--k~~~~YG~~Ear~K~p~g-~~~G~~pAfwl~~~--------- 82 (215)
|.|+.|+ ..+|.|.|++++ ..+++++| |+-|+-|++|++++||-. ...|+|||||+++.
T Consensus 158 Y~p~~vt--t~~G~l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~as 235 (504)
T PF03935_consen 158 YDPDAVT--TENGSLVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGAS 235 (504)
T ss_pred ecCCCcE--eeCCEEEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccc
Confidence 6677776 468899999986 24778888 667899999999999853 24699999999751
Q ss_pred -CC-CC---------------------------------------------CCCeee-EEeeCCCC----c---eEEE--
Q 028023 83 -EG-DK---------------------------------------------SQDEID-FEFLGKDK----T---IVQT-- 105 (215)
Q Consensus 83 -~~-~~---------------------------------------------~~~EID-iE~~g~~~----~---~~~~-- 105 (215)
++ || ...||| ||...... . .+|.
T Consensus 236 t~g~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP 315 (504)
T PF03935_consen 236 TDGMWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAP 315 (504)
T ss_pred cCceecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeecc
Confidence 00 11 124999 89654321 1 1111
Q ss_pred ------------EEEeCCC-------CCC-ceEE----eCCcc-----cCCccEEEEEEECCC-----cEEEEECCeEEE
Q 028023 106 ------------NYYTTGT-------GNR-EEIH----DLGFD-----CSEGFHEYVIKWGPD-----LIQWLIDGKVVR 151 (215)
Q Consensus 106 ------------n~~~~~~-------~~~-~~~~----~~~~d-----~~~~fH~Y~idWtp~-----~I~fyvDG~~v~ 151 (215)
.+|.... ++. .+.+ .+..+ ...+||+|+|||.|. .|+|++||++++
T Consensus 316 ~d~~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~tw 395 (504)
T PF03935_consen 316 FDIWYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTW 395 (504)
T ss_pred cccCCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEE
Confidence 1111000 000 0111 11111 236899999999874 999999999999
Q ss_pred EEecCC----C----CCCCCCccEEEEEeecCCCCCCCccccCCC-CCCCCEEEEEeEEEEec---CCcccc
Q 028023 152 RAERNE----G----EGFPNKPMFLYASVWDASHIDKARWCGPYV-GCDAPYVCLYKDIHVPV---ATAVEC 211 (215)
Q Consensus 152 ~~~~~~----~----~~~P~~P~~l~ln~W~~g~~~~g~W~G~~~-~~~~p~~~~~~~v~v~~---~~~~~c 211 (215)
++.... + ..+|..||+||||+ +....|.--.. .-.+|..|.||||||+- ..+.-|
T Consensus 396 ti~a~Al~~~~~I~~R~Ip~EPMyIIlNl-----gmS~sf~~vd~~~L~FP~~M~IDYVRVYQ~~~~~~vgC 462 (504)
T PF03935_consen 396 TINAEALGPNPNIGQRPIPEEPMYIILNL-----GMSSSFGYVDWNHLCFPATMRIDYVRVYQPEDAINVGC 462 (504)
T ss_pred EEEhhhcCCCCCcCccccCcCCceeeecc-----ccccccCccccccccccceEEEeEEEEeccCCCCeeee
Confidence 998642 1 45889999999999 65566764221 23599999999999953 445556
No 16
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.71 E-value=1.1e-16 Score=138.01 Aligned_cols=147 Identities=21% Similarity=0.224 Sum_probs=98.4
Q ss_pred CCCeEEEEEcCC---------CeeeEEEccceEeeEEEEEE-EecCCCCceeEEEEeeecCCCCCCCCeee-EEeeCCCC
Q 028023 32 DSNSITLTFDHR---------GGARWRSTTRFLYGTFSSLI-QCPKGNTSGLNFNIYLSSLEGDKSQDEID-FEFLGKDK 100 (215)
Q Consensus 32 ~~~~l~L~~~~~---------~ga~i~Sk~~~~YG~~Ear~-K~p~g~~~G~~pAfwl~~~~~~~~~~EID-iE~~g~~~ 100 (215)
.++.|.|++|.. ++++|.||+.|.||++|+|+ |||.+. |+||||||++. +||..+||| ||.++..
T Consensus 47 ~~g~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g~--G~WPAfW~~g~-~WP~~GEIDImE~vn~~- 122 (293)
T cd02181 47 NSGNVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGGC--GTWPAFWTVGP-NWPNGGEIDIIEGVNLQ- 122 (293)
T ss_pred eCCeEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCCC--CccchhhhcCC-CCCCCCcEEEEeccCCC-
Confidence 347899999853 37899999999999999997 999875 99999999986 799999999 8999874
Q ss_pred ceEEEEEEeCCC----------C-------------CCceEEe--------CCcccCCccEEEEEEECCCcEEEEECCeE
Q 028023 101 TIVQTNYYTTGT----------G-------------NREEIHD--------LGFDCSEGFHEYVIKWGPDLIQWLIDGKV 149 (215)
Q Consensus 101 ~~~~~n~~~~~~----------~-------------~~~~~~~--------~~~d~~~~fH~Y~idWtp~~I~fyvDG~~ 149 (215)
...+..+|..+. + +.+..+. .+|+ ..+=-+|++||+++.|+.+.=-+.
T Consensus 123 ~~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~ 201 (293)
T cd02181 123 TSNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRG 201 (293)
T ss_pred CceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCC
Confidence 344455554321 0 0000111 1111 223469999999999987765321
Q ss_pred --EEEEecC--C-------CCCCCC---------CccEEEEEeecCCCCCCCcc
Q 028023 150 --VRRAERN--E-------GEGFPN---------KPMFLYASVWDASHIDKARW 183 (215)
Q Consensus 150 --v~~~~~~--~-------~~~~P~---------~P~~l~ln~W~~g~~~~g~W 183 (215)
-..+... + ...+|. +++.|+||+=.=|+++|+.|
T Consensus 202 ~iP~di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwAG~~~ 255 (293)
T cd02181 202 SIPADITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWAGNVW 255 (293)
T ss_pred CCCcccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeeccccccCccc
Confidence 1112111 1 134554 78999999955555554444
No 17
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=94.29 E-value=1.6 Score=32.50 Aligned_cols=65 Identities=12% Similarity=0.258 Sum_probs=40.1
Q ss_pred CCccEEEEEEECCCcEEEEECCeEEEEEecCCCCCCCCCccEEEEEeecCCCCCCCccccCCCCCCCCEEEEEeEEEEec
Q 028023 126 SEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVPV 205 (215)
Q Consensus 126 ~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~~~~~~~P~~P~~l~ln~W~~g~~~~g~W~G~~~~~~~p~~~~~~~v~v~~ 205 (215)
.+.||..++.|..+.+++||||+++.+......... .....+.+.- .. ....++...++.|||..
T Consensus 84 ~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~~~-~~~~~~~iG~---------~~-----~~~~~~~g~i~~~~i~~ 148 (157)
T PF13385_consen 84 DNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNISL-NSNGPLFIGG---------SG-----GGSSPFNGYIDDLRIYN 148 (157)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEETTCTEESSSST-TSCCEEEESS----------S-----TT--B-EEEEEEEEEES
T ss_pred CCCEEEEEEEEECCeEEEEECCEEEEeEeccCCcCC-CCcceEEEee---------cC-----CCCCceEEEEEEEEEEC
Confidence 478999999999999999999999987543211000 1112222211 11 23678999999999976
No 18
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=94.20 E-value=0.29 Score=41.38 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=51.4
Q ss_pred EEEEEEEecCCC-----CceeEEEEeeecC----------C---CCC-CCCeee-EEeeCCCCceEEEEEEeC-CC----
Q 028023 58 TFSSLIQCPKGN-----TSGLNFNIYLSSL----------E---GDK-SQDEID-FEFLGKDKTIVQTNYYTT-GT---- 112 (215)
Q Consensus 58 ~~Ear~K~p~g~-----~~G~~pAfwl~~~----------~---~~~-~~~EID-iE~~g~~~~~~~~n~~~~-~~---- 112 (215)
.|=.+++||... ...=.||+||+.. . -|. .++|+| +|++......+.+++|.. |.
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g~~k~~St~H~~qG~~~~~ 181 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSGDDKLKSTFHDYQGTDDIN 181 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCCCceeEEEEecccCccccC
Confidence 377888888731 1256899999863 1 143 489999 899998777888888873 32
Q ss_pred --CCCceEEeCCcccCCccEEEEEEECCC
Q 028023 113 --GNREEIHDLGFDCSEGFHEYVIKWGPD 139 (215)
Q Consensus 113 --~~~~~~~~~~~d~~~~fH~Y~idWtp~ 139 (215)
++....+. .+.+..-++++.++.+
T Consensus 182 ~g~G~~~yf~---RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 182 GGGGSSDYFK---RPTSGTMKVAVIFDSS 207 (235)
T ss_pred CCCCCCCccc---CCCCCCeEEEEEEcCC
Confidence 11222222 2455778888888643
No 19
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=93.31 E-value=0.6 Score=36.99 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=60.5
Q ss_pred CCeeeEEEccceEeeEEEEEEEecCCCCceeEEEEeeecC-----CCCCCCCeeeEEeeCCCCceEEEEEEeCCCCCCc-
Q 028023 43 RGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSL-----EGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNRE- 116 (215)
Q Consensus 43 ~~ga~i~Sk~~~~YG~~Ear~K~p~g~~~G~~pAfwl~~~-----~~~~~~~EIDiE~~g~~~~~~~~n~~~~~~~~~~- 116 (215)
..++.+.++..|.=..+++.+|+.++..+|+ .+... ..+...-|+.|.--... .......+..-
T Consensus 41 ~~~~~l~~~~~~~df~l~~d~k~~~~~~sGi----~~r~~~~~~~~~~~~gy~~~i~~~~~~------~~~~~~~G~~~~ 110 (185)
T PF06439_consen 41 SGGGYLYTDKKFSDFELEVDFKITPGGNSGI----FFRAQSPGDGQDWNNGYEFQIDNSGGG------TGLPNSTGSLYD 110 (185)
T ss_dssp SSS--EEESSEBSSEEEEEEEEE-TT-EEEE----EEEESSECCSSGGGTSEEEEEE-TTTC------STTTTSTTSBTT
T ss_pred CCcceEEECCccccEEEEEEEEECCCCCeEE----EEEeccccCCCCcceEEEEEEECCCCc------cCCCCccceEEE
Confidence 4566788888777778999999744322333 22221 11233345554321111 00000001000
Q ss_pred ----eEEe-C-CcccCCccEEEEEEECCCcEEEEECCeEEEEEecCCCCCCCC---CccEEEEEe
Q 028023 117 ----EIHD-L-GFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPN---KPMFLYASV 172 (215)
Q Consensus 117 ----~~~~-~-~~d~~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~~~~~~~P~---~P~~l~ln~ 172 (215)
.... . ......+||++.|.-..++|+.||||++|.++... ..+. ...+|-|..
T Consensus 111 ~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~---~~~~~~~~~G~Igl~~ 172 (185)
T PF06439_consen 111 EPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP---SFPYSNPTKGPIGLQT 172 (185)
T ss_dssp TB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT---SHHHHHHSSBEEEEEC
T ss_pred eccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC---CCCCCCCCceEEEEEe
Confidence 0000 1 11245689999999999999999999999998752 1211 445666654
No 20
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=92.07 E-value=1.1 Score=36.66 Aligned_cols=27 Identities=26% Similarity=0.690 Sum_probs=24.8
Q ss_pred CccEEEEEEECC--CcEEEEECCeEEEEE
Q 028023 127 EGFHEYVIKWGP--DLIQWLIDGKVVRRA 153 (215)
Q Consensus 127 ~~fH~Y~idWtp--~~I~fyvDG~~v~~~ 153 (215)
.+||.|.|+..| ..-.|||||+++.+.
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw 120 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATW 120 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeec
Confidence 479999999977 899999999999985
No 21
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=89.74 E-value=9.3 Score=30.74 Aligned_cols=30 Identities=7% Similarity=0.139 Sum_probs=26.9
Q ss_pred cCCccEEEEEEECCCcEEEEECCeEEEEEe
Q 028023 125 CSEGFHEYVIKWGPDLIQWLIDGKVVRRAE 154 (215)
Q Consensus 125 ~~~~fH~Y~idWtp~~I~fyvDG~~v~~~~ 154 (215)
....||..++.+..+.+++|||++++.+..
T Consensus 115 ~dg~WH~lal~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 115 ADGQWHKLALSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred ccCCceEEEEEEeCCEEEEEECCcccccee
Confidence 456899999999999999999999988764
No 22
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=86.29 E-value=12 Score=28.17 Aligned_cols=28 Identities=7% Similarity=0.061 Sum_probs=24.5
Q ss_pred CCccEEEEEEECC--CcEEEEECCeEEEEE
Q 028023 126 SEGFHEYVIKWGP--DLIQWLIDGKVVRRA 153 (215)
Q Consensus 126 ~~~fH~Y~idWtp--~~I~fyvDG~~v~~~ 153 (215)
...||-..+.++. ..|++||||+++.+.
T Consensus 60 ~~~W~hva~v~d~~~g~~~lYvnG~~~~~~ 89 (133)
T smart00560 60 IGVWVHLAGVYDGGAGKLSLYVNGVEVATS 89 (133)
T ss_pred CCCEEEEEEEEECCCCeEEEEECCEEcccc
Confidence 4789999999987 799999999998754
No 23
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=85.94 E-value=3.6 Score=39.83 Aligned_cols=56 Identities=21% Similarity=0.427 Sum_probs=36.5
Q ss_pred cCCccEEEEEEECCCcEEEEECCeEEEEEecCCCCCCCCCccEEEEEeecCCCCCCCccccCC
Q 028023 125 CSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPY 187 (215)
Q Consensus 125 ~~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~~~~~~~P~~P~~l~ln~W~~g~~~~g~W~G~~ 187 (215)
..++||-|.+.-.=-.++.|+||+.+.-..-. .+||-.|..+-..+ -+|.=|.|..
T Consensus 440 CD~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~--ddwplHpsk~~tqL-----vVGACW~g~~ 495 (952)
T KOG1834|consen 440 CDNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT--DDWPLHPSKIETQL-----VVGACWQGRQ 495 (952)
T ss_pred hhhhhheeEEeecCceEEEEEcCcccCCceec--cCCccCccccccee-----EEeeeccCcc
Confidence 46799999999964349999999876532211 36886665544444 2334577754
No 24
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=82.45 E-value=12 Score=30.79 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=43.8
Q ss_pred cCCccEEEEEEEC--CCcEEEEECCeEEEEEecCCCCCCCCCccEEEEEeecCCCCCCCccccCCCCCCCCEEEEEeEEE
Q 028023 125 CSEGFHEYVIKWG--PDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIH 202 (215)
Q Consensus 125 ~~~~fH~Y~idWt--p~~I~fyvDG~~v~~~~~~~~~~~P~~P~~l~ln~W~~g~~~~g~W~G~~~~~~~p~~~~~~~v~ 202 (215)
...+||...+.|+ ..++++|+||+++.......+..++ ....|+|.. . ...+.|+.+ ....|.=.++.|+
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~~~~~~g~~i~-~~G~lvlGq-~-----qd~~gg~f~-~~~~f~G~i~~v~ 159 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVRKGLAKGYTVK-PGGSIILGQ-E-----QDSYGGGFD-ATQSFVGEIGDLN 159 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEcccccccCCcEEC-CCCEEEEEe-c-----ccCCCCCCC-CCcceeEEEeeeE
Confidence 3568999999997 5579999999987221111122232 234566665 1 123445443 3345677788888
Q ss_pred Eec
Q 028023 203 VPV 205 (215)
Q Consensus 203 v~~ 205 (215)
|-.
T Consensus 160 iw~ 162 (206)
T smart00159 160 MWD 162 (206)
T ss_pred Eec
Confidence 744
No 25
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=80.51 E-value=30 Score=28.17 Aligned_cols=73 Identities=12% Similarity=0.247 Sum_probs=44.4
Q ss_pred cCCccEEEEEEEC--CCcEEEEECCeEEEEEecCCCCCCCCCccEEEEEeecCCCCCCCccccCCCCCCCCEEEEEeEEE
Q 028023 125 CSEGFHEYVIKWG--PDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIH 202 (215)
Q Consensus 125 ~~~~fH~Y~idWt--p~~I~fyvDG~~v~~~~~~~~~~~P~~P~~l~ln~W~~g~~~~g~W~G~~~~~~~p~~~~~~~v~ 202 (215)
....||...+.|+ ...+++||||+++.+-..+.+..++. ...|+|.. . ...+.|..+ ....|.=.++.|+
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~~~~~~~~~~-~g~l~lG~-----~-q~~~gg~~~-~~~~f~G~I~~v~ 159 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKSLKKGYTVGP-GGSIILGQ-----E-QDSYGGGFD-ATQSFVGEISDVN 159 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEeccccccCCCEECC-CCeEEEee-----c-ccCCCCCCC-CCcceEEEEceeE
Confidence 4668999999997 55799999999886543222223332 33455543 0 112333333 3345777788888
Q ss_pred Eec
Q 028023 203 VPV 205 (215)
Q Consensus 203 v~~ 205 (215)
|-.
T Consensus 160 iw~ 162 (201)
T cd00152 160 MWD 162 (201)
T ss_pred EEc
Confidence 754
No 26
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=76.32 E-value=29 Score=25.84 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=49.2
Q ss_pred eEeeEEEEEEEecCCCCceeEEEEeeecCCCCCCCCeeeEEeeCCCCceEEEEEEeCCCCCCceEEeCCc-ccCCccEEE
Q 028023 54 FLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGF-DCSEGFHEY 132 (215)
Q Consensus 54 ~~YG~~Ear~K~p~g~~~G~~pAfwl~~~~~~~~~~EIDiE~~g~~~~~~~~n~~~~~~~~~~~~~~~~~-d~~~~fH~Y 132 (215)
-....++.++|..... |+. |++-.. .....+-+|+..+ .+...+... .....+.... -....||..
T Consensus 19 ~~~~~i~~~frt~~~~--g~l--~~~~~~---~~~~~~~l~l~~g---~l~~~~~~g---~~~~~~~~~~~v~dg~Wh~v 85 (151)
T cd00110 19 RTRLSISFSFRTTSPN--GLL--LYAGSQ---NGGDFLALELEDG---RLVLRYDLG---SGSLVLSSKTPLNDGQWHSV 85 (151)
T ss_pred cceeEEEEEEEeCCCC--eEE--EEecCC---CCCCEEEEEEECC---EEEEEEcCC---cccEEEEccCccCCCCEEEE
Confidence 3455688888876654 765 333221 1234555666533 333322221 1122222221 235579999
Q ss_pred EEEECCCcEEEEECCeEEEEE
Q 028023 133 VIKWGPDLIQWLIDGKVVRRA 153 (215)
Q Consensus 133 ~idWtp~~I~fyvDG~~v~~~ 153 (215)
.+.+..+.++.+|||..+.+.
T Consensus 86 ~i~~~~~~~~l~VD~~~~~~~ 106 (151)
T cd00110 86 SVERNGRSVTLSVDGERVVES 106 (151)
T ss_pred EEEECCCEEEEEECCccEEee
Confidence 999999999999999854443
No 27
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=75.23 E-value=44 Score=27.31 Aligned_cols=68 Identities=15% Similarity=0.447 Sum_probs=43.5
Q ss_pred CCccEEEEEE--ECC---CcEEEEECCeEEEEEecCCCCCCC-CCccEEEEEeecCCCCCCCccccCCCCCCCCEEEEEe
Q 028023 126 SEGFHEYVIK--WGP---DLIQWLIDGKVVRRAERNEGEGFP-NKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYK 199 (215)
Q Consensus 126 ~~~fH~Y~id--Wtp---~~I~fyvDG~~v~~~~~~~~~~~P-~~P~~l~ln~W~~g~~~~g~W~G~~~~~~~p~~~~~~ 199 (215)
...||.+.|. |.+ ..|+.++||+++....... .++ ....++-+.++-.+. ...... .+-..+||
T Consensus 151 ~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~--~~~~~~~~y~K~GiYr~~~------~~~~~~--~~~~vy~D 220 (224)
T PF14099_consen 151 RGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT--GYNDDRGPYFKFGIYRSGW------KNDPNE--SDTQVYYD 220 (224)
T ss_dssp TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE--CECCSSEEEEEEEEEEHCC------HHHSC----SS-EEEE
T ss_pred CCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc--eeCCCCcceeEEEEECCCC------cCCCcc--cccEEEec
Confidence 4689988765 764 7899999999998876521 233 367888898865542 222211 11118999
Q ss_pred EEEE
Q 028023 200 DIHV 203 (215)
Q Consensus 200 ~v~v 203 (215)
.|++
T Consensus 221 ~v~~ 224 (224)
T PF14099_consen 221 NVRI 224 (224)
T ss_dssp EEE-
T ss_pred cccC
Confidence 9985
No 28
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=73.54 E-value=4.1 Score=29.11 Aligned_cols=47 Identities=9% Similarity=0.269 Sum_probs=33.8
Q ss_pred CCCCCcccccCCCeEEEEEcCCCeeeEEEccceEeeEEEEEEEecCC
Q 028023 22 YTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKG 68 (215)
Q Consensus 22 f~~~~~~~~~~~~~l~L~~~~~~ga~i~Sk~~~~YG~~Ear~K~p~g 68 (215)
|++.+|+....++.|+|+..+..-.+-.....+.||.|+=++.||..
T Consensus 19 ~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 19 FEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred CCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC
Confidence 88888888888999999887532111011225699999999999964
No 29
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=68.45 E-value=7.5 Score=26.97 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=33.6
Q ss_pred CCCCCcccccCCCeEEEEEcCCCeeeEEEccceEeeEEEEEEEecCC
Q 028023 22 YTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKG 68 (215)
Q Consensus 22 f~~~~~~~~~~~~~l~L~~~~~~ga~i~Sk~~~~YG~~Ear~K~p~g 68 (215)
|+|++|+....++.|.|+........ ...+.+|+|+=++++|..
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~ 61 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEG 61 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCC
Confidence 88999998888998988887532211 345678999999999864
No 30
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=58.28 E-value=34 Score=23.89 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=30.8
Q ss_pred CCCCCcccccCCCeEEEEEcCCCeeeEEEccceEeeEEEEEEEecCC
Q 028023 22 YTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKG 68 (215)
Q Consensus 22 f~~~~~~~~~~~~~l~L~~~~~~ga~i~Sk~~~~YG~~Ear~K~p~g 68 (215)
|+|.+|+....++.|+|+..+. ......||+|.=++.+|..
T Consensus 19 ~~pedi~V~v~~~~L~I~ger~------~~~~~~~g~F~R~~~LP~~ 59 (81)
T cd06479 19 FSPEDIIVTTSNNQIEVHAEKL------ASDGTVMNTFTHKCQLPED 59 (81)
T ss_pred CCHHHeEEEEECCEEEEEEEEe------ccCCCEEEEEEEEEECCCC
Confidence 8899998888898888876432 1112368999999999864
No 31
>PF10974 DUF2804: Protein of unknown function (DUF2804); InterPro: IPR021243 This is a family of proteins with unknown function.
Probab=55.81 E-value=41 Score=29.78 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=43.3
Q ss_pred CCCceeEEeCCCC----CcccccCCCeEEEEEcCCC-------eeeEEEccceEeeEEEEEEEecCCC
Q 028023 13 EPIKEIAIDYTPE----ACTHCADSNSITLTFDHRG-------GARWRSTTRFLYGTFSSLIQCPKGN 69 (215)
Q Consensus 13 ~~~~~~~~df~~~----~~~~~~~~~~l~L~~~~~~-------ga~i~Sk~~~~YG~~Ear~K~p~g~ 69 (215)
-++.++.++|.+. .+.+...++.+.|++.+.. =.-+.|++..-+|+|+.+++++.|.
T Consensus 249 ~kL~~V~f~~~~~~~~~pW~i~s~dg~vdL~FtP~~~r~~~~nl~~i~s~~~Q~fG~f~G~~~~~dG~ 316 (333)
T PF10974_consen 249 HKLPPVRFEYDREDPMKPWRITSDDGRVDLTFTPIFDRKEKTNLGVIASNFHQVFGRFSGTLRLDDGE 316 (333)
T ss_pred EECCcEEEEecCcCCCCCeEEEcCCCeEEEEEEEeeeeecccceEEEEeeeEEEEEEEEEEEEcCCCC
Confidence 3567777777774 4466677899999998731 2357889999999999999998763
No 32
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=49.04 E-value=81 Score=25.69 Aligned_cols=71 Identities=15% Similarity=0.305 Sum_probs=38.2
Q ss_pred cCCccEEEEEEEC--CCcEEEEECCeEEEEEecCCCCCCCCCccEEEEEeecCCCCCCCccccCCCCCCCCEEEEEeEEE
Q 028023 125 CSEGFHEYVIKWG--PDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIH 202 (215)
Q Consensus 125 ~~~~fH~Y~idWt--p~~I~fyvDG~~v~~~~~~~~~~~P~~P~~l~ln~W~~g~~~~g~W~G~~~~~~~p~~~~~~~v~ 202 (215)
....||-+-+-|+ ...+.+|+||+...+-....+..+|.. ..|+|.. ....-.|+.+ ..-.|.=.+..|+
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~~~~g~~i~~g-G~~vlGQ------eQd~~gG~fd-~~q~F~G~i~~~~ 153 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTGLATGHSIPGG-GTLVLGQ------EQDSYGGGFD-ESQAFVGEISDFN 153 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEESSTT--B-SS-EEEEESS-------BSBTTBTCS-GGGB--EEEEEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEecccccccCCceECCC-CEEEECc------cccccCCCcC-CccEeeEEEeceE
Confidence 3568999999996 589999999996544333334445432 2345554 1122333333 3345666666666
Q ss_pred E
Q 028023 203 V 203 (215)
Q Consensus 203 v 203 (215)
+
T Consensus 154 i 154 (195)
T PF00354_consen 154 I 154 (195)
T ss_dssp E
T ss_pred E
Confidence 5
No 33
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=48.95 E-value=26 Score=24.66 Aligned_cols=47 Identities=9% Similarity=0.045 Sum_probs=33.2
Q ss_pred CCCCCcccccCCCeEEEEEcCCCeee---EEEccceEeeEEEEEEEecCC
Q 028023 22 YTPEACTHCADSNSITLTFDHRGGAR---WRSTTRFLYGTFSSLIQCPKG 68 (215)
Q Consensus 22 f~~~~~~~~~~~~~l~L~~~~~~ga~---i~Sk~~~~YG~~Ear~K~p~g 68 (215)
+++.+|+....++.|.|+........ -.-...+.||.|+-+++||..
T Consensus 22 ~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~ 71 (90)
T cd06470 22 FSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADH 71 (90)
T ss_pred CCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCC
Confidence 78888888888888888876533221 011235679999999999974
No 34
>smart00282 LamG Laminin G domain.
Probab=47.56 E-value=36 Score=25.18 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=23.8
Q ss_pred CCccEEEEEEECCCcEEEEECCeEEEEE
Q 028023 126 SEGFHEYVIKWGPDLIQWLIDGKVVRRA 153 (215)
Q Consensus 126 ~~~fH~Y~idWtp~~I~fyvDG~~v~~~ 153 (215)
...||.-.+.-....++.+|||+.....
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccE
Confidence 4589999999999999999999765443
No 35
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=46.82 E-value=20 Score=24.29 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=33.5
Q ss_pred CCCCCcccccCCCeEEEEEcCCCeee---EEEccceEeeEEEEEEEecCC
Q 028023 22 YTPEACTHCADSNSITLTFDHRGGAR---WRSTTRFLYGTFSSLIQCPKG 68 (215)
Q Consensus 22 f~~~~~~~~~~~~~l~L~~~~~~ga~---i~Sk~~~~YG~~Ear~K~p~g 68 (215)
|.+.+++....++.|.++........ -.......+|.|+-++++|..
T Consensus 18 ~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~ 67 (88)
T cd06464 18 FKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPED 67 (88)
T ss_pred CCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCC
Confidence 77788888888888888876532111 223455779999999999975
No 36
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=45.61 E-value=27 Score=24.63 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=32.6
Q ss_pred CCCCCcccccCCCeEEEEEcCCCeeeEEE-ccceEeeEEEEEEEecCC
Q 028023 22 YTPEACTHCADSNSITLTFDHRGGARWRS-TTRFLYGTFSSLIQCPKG 68 (215)
Q Consensus 22 f~~~~~~~~~~~~~l~L~~~~~~ga~i~S-k~~~~YG~~Ear~K~p~g 68 (215)
|.|.+|+....++.|.|+........-.. ...+.+|.|.=++.+|..
T Consensus 18 ~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~ 65 (87)
T cd06481 18 FSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEH 65 (87)
T ss_pred CChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCC
Confidence 88999988888999999886532111111 112468999999999864
No 37
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=44.99 E-value=30 Score=24.16 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=22.2
Q ss_pred CcEEEEECCeEEEEEecCCCCCCC-CCccEEEEEe
Q 028023 139 DLIQWLIDGKVVRRAERNEGEGFP-NKPMFLYASV 172 (215)
Q Consensus 139 ~~I~fyvDG~~v~~~~~~~~~~~P-~~P~~l~ln~ 172 (215)
..+.|||||+.+.+........|+ ..|..-.|.+
T Consensus 43 ~~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~v 77 (89)
T PF06832_consen 43 GPVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTV 77 (89)
T ss_pred CcEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEE
Confidence 489999999999665443323343 4666666665
No 38
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=41.24 E-value=44 Score=25.80 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=32.0
Q ss_pred CCCCCcccccCCCeEEEEEcCCCee----eEEEccceEeeEEEEEEEecCCC
Q 028023 22 YTPEACTHCADSNSITLTFDHRGGA----RWRSTTRFLYGTFSSLIQCPKGN 69 (215)
Q Consensus 22 f~~~~~~~~~~~~~l~L~~~~~~ga----~i~Sk~~~~YG~~Ear~K~p~g~ 69 (215)
|.+.+|.....++.|+|+....... +-.-.....||.|+-+++||..-
T Consensus 61 ~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v 112 (146)
T COG0071 61 VDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKV 112 (146)
T ss_pred CChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccc
Confidence 6677777777777777777664311 11222346799999999999753
No 39
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=40.85 E-value=1.6e+02 Score=24.18 Aligned_cols=70 Identities=9% Similarity=0.098 Sum_probs=40.1
Q ss_pred CccEEEEEEEC--CCcEEEEECCeEEEEEecCCCCCCCCCccEEEEEeecCCCCCCCccccCCCCCCCCEEEEEeEEEEe
Q 028023 127 EGFHEYVIKWG--PDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVP 204 (215)
Q Consensus 127 ~~fH~Y~idWt--p~~I~fyvDG~~v~~~~~~~~~~~P~~P~~l~ln~W~~g~~~~g~W~G~~~~~~~p~~~~~~~v~v~ 204 (215)
..||+-++.=. ..+.++|+||+++.++..+.+.-+-+.|--=-+.+ |+.=-++ ....||.-.+++|+|+
T Consensus 103 ~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~~~Fis~i~~~n~~~i-------G~t~R~g--~~~y~f~G~I~~l~iY 173 (190)
T PF02973_consen 103 VTFNTVAFVADSKNKGYKLYVNGELVSTLSSKSGNFISDIPGLNSVQI-------GGTNRAG--SNAYPFNGTIDNLKIY 173 (190)
T ss_dssp ES-EEEEEEEETTTTEEEEEETTCEEEEEEECTSS-GGGSTT--EEEE-------SSEEETT--EEES--EEEEEEEEEE
T ss_pred ceEEEEEEEEecCCCeEEEEeCCeeEEEeccccccHhhcCcCCceEEE-------cceEeCC--CceecccceEEEEEEE
Confidence 46898888775 78999999999998886543211112221111222 1110011 2468999999999998
Q ss_pred c
Q 028023 205 V 205 (215)
Q Consensus 205 ~ 205 (215)
.
T Consensus 174 n 174 (190)
T PF02973_consen 174 N 174 (190)
T ss_dssp S
T ss_pred c
Confidence 7
No 40
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=39.83 E-value=4.8e+02 Score=27.62 Aligned_cols=133 Identities=15% Similarity=0.159 Sum_probs=79.4
Q ss_pred cccc--cCCCCCceeEEeCCCCCcccccCCCeEEEEEcCCCeeeEEEccceEeeEEEEEEEecCCCCceeEEEEeeecCC
Q 028023 6 VQSL--HQTEPIKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLE 83 (215)
Q Consensus 6 ~~~~--~~~~~~~~~~~df~~~~~~~~~~~~~l~L~~~~~~ga~i~Sk~~~~YG~~Ear~K~p~g~~~G~~pAfwl~~~~ 83 (215)
-|+. |.+..+.=++|.+....+.|. ....|...+++.-- .| ..-.+..++|....+ |+ .+++.
T Consensus 157 ~wnp~grig~rVevygc~y~s~vi~fd-g~s~~~yr~~~~~m---~s----~~d~is~~Fkt~~sd--Gv----llh~e- 221 (1306)
T KOG3516|consen 157 DWNPKGRIGMRVEVYGCSYKSPVIYFD-GSSSLLYRFHRKLM---SS----LKDVISLKFKTMQSD--GV----LLHGE- 221 (1306)
T ss_pred eeCCCCcceeEEEEEeccccCceeEEC-Cccceeeecccccc---cc----ccceeEEEEEeeccc--ee----EEEcc-
Confidence 3666 888999999999999998874 45566666665321 11 122477788887765 75 35542
Q ss_pred CCCCCCeeeEEeeCCCCceEEEEEEeCCCC-CC-ceEEeCCccc-CCccEEEEEEECCCcEEEEECCeEEEEEec
Q 028023 84 GDKSQDEIDFEFLGKDKTIVQTNYYTTGTG-NR-EEIHDLGFDC-SEGFHEYVIKWGPDLIQWLIDGKVVRRAER 155 (215)
Q Consensus 84 ~~~~~~EIDiE~~g~~~~~~~~n~~~~~~~-~~-~~~~~~~~d~-~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~ 155 (215)
+ ...+-|-+|..++.. .++.+.-..... .+ ...+.++.-+ ..-||--.|+=.-..|.|.||+...+....
T Consensus 222 g-~QGd~itlql~~~kl-~l~ld~G~~~~~~s~~~~sis~GslLdD~hWHsV~i~r~~~~vnftvD~~~~~fr~~ 294 (1306)
T KOG3516|consen 222 G-QQGDYITLQLIGGKL-VLILDLGNSKLPSSRTPTSISAGSLLDDQHWHSVRIERQGRQVNFTVDGVVHHFRAT 294 (1306)
T ss_pred c-CCCCEEEEEEeCCEE-EEEEecCCccCccccCcceeecccccCCCcceEEEEEecCcEEEEEEccceEeeccc
Confidence 1 234456688877631 222222111111 11 1223333211 234888888888999999999999975443
No 41
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=32.14 E-value=31 Score=24.41 Aligned_cols=45 Identities=20% Similarity=0.397 Sum_probs=28.7
Q ss_pred CCCCCcccccCCCeEEEEEcCC----CeeeEEEccceEeeEEEEEEEecCC
Q 028023 22 YTPEACTHCADSNSITLTFDHR----GGARWRSTTRFLYGTFSSLIQCPKG 68 (215)
Q Consensus 22 f~~~~~~~~~~~~~l~L~~~~~----~ga~i~Sk~~~~YG~~Ear~K~p~g 68 (215)
|.+++++....++.|.|+.... ....+. ..+.+|.|+-++++|..
T Consensus 18 ~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~--~~~~~~~f~r~~~lP~~ 66 (102)
T PF00011_consen 18 FDKEDIKIKVDDNKLVISGKRKEEEEDDRYYR--SERRYGSFERSIRLPED 66 (102)
T ss_dssp S-GGGEEEEEETTEEEEEEEEEGEECTTCEEE--E-S-SEEEEEEEE-STT
T ss_pred CChHHEEEEEecCccceeceeeeeeeeeeeee--cccccceEEEEEcCCCc
Confidence 7778888877888888887654 111112 23578999999999874
No 42
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=30.81 E-value=74 Score=23.65 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=24.1
Q ss_pred CCccEEEEEEECCCcEEEEECCeEEEEEec
Q 028023 126 SEGFHEYVIKWGPDLIQWLIDGKVVRRAER 155 (215)
Q Consensus 126 ~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~ 155 (215)
.++-|++.+. .-+.++++|||+++-....
T Consensus 58 ~~G~y~f~~~-~~d~~~l~idg~~vid~~~ 86 (145)
T PF07691_consen 58 ETGTYTFSLT-SDDGARLWIDGKLVIDNWG 86 (145)
T ss_dssp SSEEEEEEEE-ESSEEEEEETTEEEEECSC
T ss_pred cCceEEEEEE-ecccEEEEECCEEEEcCCc
Confidence 5578888888 7889999999999987653
No 43
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=27.87 E-value=3.3e+02 Score=22.11 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=60.4
Q ss_pred CCeEEEEEcC-CCeeeEEEccceEe-eEEEEEEEe--cC---CCCceeEEEEeeecCCCCC--------------CCC--
Q 028023 33 SNSITLTFDH-RGGARWRSTTRFLY-GTFSSLIQC--PK---GNTSGLNFNIYLSSLEGDK--------------SQD-- 89 (215)
Q Consensus 33 ~~~l~L~~~~-~~ga~i~Sk~~~~Y-G~~Ear~K~--p~---g~~~G~~pAfwl~~~~~~~--------------~~~-- 89 (215)
++.|.|+=+. +..+.+-.+..+.. -.|++.+.+ .. ..+.|+ |||+.+....+ ...
T Consensus 28 ~~~l~Lt~~~~~~~G~~~~~~~i~~~~~F~~~F~f~i~~~~~~~gdG~--aF~l~~~~~~~~~~~g~~~~lG~~~~~~~~ 105 (223)
T cd01951 28 SGVLRLTPDTGNQAGSAWYKTPIDLSKDFTTTFKFYLGTKGTNGADGI--AFVLQNDPAGALGGGGGGGGLGYGGIGNSV 105 (223)
T ss_pred CCEEEECCCCCCcEEEEEECCcEeccCCEEEEEEEEEeCCCCCCCCcE--EEEEecCCCCccccCCCCCccCccccCCeE
Confidence 6678888663 45566666666654 334444333 22 122366 79998742110 011
Q ss_pred --eee-EEeeC-CCCceEEEEEEeCCCCCC------ceEEeCCcccC-CccEEEEEEECC--CcEEEEECCeE
Q 028023 90 --EID-FEFLG-KDKTIVQTNYYTTGTGNR------EEIHDLGFDCS-EGFHEYVIKWGP--DLIQWLIDGKV 149 (215)
Q Consensus 90 --EID-iE~~g-~~~~~~~~n~~~~~~~~~------~~~~~~~~d~~-~~fH~Y~idWtp--~~I~fyvDG~~ 149 (215)
|+| +--.. .++..-|..+..++.... .....++.... ..+|...|+|.+ ..|+.++++..
T Consensus 106 aVefDT~~N~~~~dp~~~higi~~n~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~I~Y~~~~~~L~v~l~~~~ 178 (223)
T cd01951 106 AVEFDTYKNDDNNDPNGNHISIDVNGNGNNTALATSLGSASLPNGTGLGNEHTVRITYDPTTNTLTVYLDNGS 178 (223)
T ss_pred EEEEeccccCCCCCCCCCEEEEEcCCCCCCcccccccceeeCCCccCCCCEEEEEEEEeCCCCEEEEEECCCC
Confidence 444 21111 234444444554443211 11222322222 579999999984 89999999874
No 44
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=27.34 E-value=1e+02 Score=21.53 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=30.2
Q ss_pred CCCCCcccccCCC-eEEEEEcCCC-----eeeEEEccceEeeEEEEEEEecCC
Q 028023 22 YTPEACTHCADSN-SITLTFDHRG-----GARWRSTTRFLYGTFSSLIQCPKG 68 (215)
Q Consensus 22 f~~~~~~~~~~~~-~l~L~~~~~~-----ga~i~Sk~~~~YG~~Ear~K~p~g 68 (215)
|++.++.....++ .|+++..... +..+ -.....||+|+-++.+|..
T Consensus 20 v~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~-~~~e~~~g~f~r~i~LP~~ 71 (92)
T cd06472 20 VKKEDVKVEVEDGRVLRISGERKKEEEKKGDDW-HRVERSSGRFVRRFRLPEN 71 (92)
T ss_pred CChHhEEEEEeCCCEEEEEEEecccccccCCCE-EEEEEeccEEEEEEECCCC
Confidence 7788888776654 6778775431 1111 1234568999999999964
No 45
>PF12021 DUF3509: Protein of unknown function (DUF3509); InterPro: IPR021898 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 92 to 110 amino acids in length. This protein has two completely conserved residues (G and R) that may be functionally important.
Probab=26.34 E-value=87 Score=22.73 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=16.9
Q ss_pred CCCCCcccc--cCCCeEEEEEcCCCe
Q 028023 22 YTPEACTHC--ADSNSITLTFDHRGG 45 (215)
Q Consensus 22 f~~~~~~~~--~~~~~l~L~~~~~~g 45 (215)
|+|.+|++. .-+|++.||+....|
T Consensus 11 F~py~v~~~~~rpDG~~llTL~d~~g 36 (94)
T PF12021_consen 11 FSPYQVNLSPPRPDGSILLTLRDEQG 36 (94)
T ss_pred cCcceEecccCCCCCCEEEEEEcCCc
Confidence 555555554 237899999998777
No 46
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=25.51 E-value=73 Score=22.23 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=31.1
Q ss_pred CCCCCcccccCCCeEEEEEcCCCee-------eEEEccceEeeEEEEEEEecCC
Q 028023 22 YTPEACTHCADSNSITLTFDHRGGA-------RWRSTTRFLYGTFSSLIQCPKG 68 (215)
Q Consensus 22 f~~~~~~~~~~~~~l~L~~~~~~ga-------~i~Sk~~~~YG~~Ear~K~p~g 68 (215)
+++.+|+....++.|.|+....... .+. .....||+|+-++.+|..
T Consensus 21 v~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~-~~e~~~g~f~r~~~lp~v 73 (93)
T cd06471 21 FKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYI-RRERYYGSFSRSFYLPNV 73 (93)
T ss_pred CCHHHeEEEEECCEEEEEEEEccccccccccCCEE-EEeeeccEEEEEEECCCC
Confidence 7778888888888888877653211 111 133578999999988754
No 47
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=24.23 E-value=2.6e+02 Score=19.64 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=27.4
Q ss_pred cCCccEEEEEEECCCcEEEEECCeEEEEEec
Q 028023 125 CSEGFHEYVIKWGPDLIQWLIDGKVVRRAER 155 (215)
Q Consensus 125 ~~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~ 155 (215)
...+||.-.+.-....++.+||+..+.....
T Consensus 52 ~dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~ 82 (128)
T PF02210_consen 52 NDGQWHKVSISRDGNRVTLTVDGQSVSSESL 82 (128)
T ss_dssp TSSSEEEEEEEEETTEEEEEETTSEEEEEES
T ss_pred cccceeEEEEEEeeeeEEEEecCccceEEec
Confidence 3567999999999999999999999988765
No 48
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=23.81 E-value=2.1e+02 Score=19.97 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=31.4
Q ss_pred CCCCCcccccCCCeEEEEEcCCCeeeEEEccceEeeEEEEEEEecCC
Q 028023 22 YTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKG 68 (215)
Q Consensus 22 f~~~~~~~~~~~~~l~L~~~~~~ga~i~Sk~~~~YG~~Ear~K~p~g 68 (215)
|.|..|.....++.|+|+.....- . ....+.++.|.=++.||..
T Consensus 18 ~~~edI~V~v~~~~L~I~ge~~~~--~-~~~~~~~r~F~R~~~LP~~ 61 (83)
T cd06477 18 FRPEDIIIQVFEGWLLIKGQHGVR--M-DEHGFISRSFTRQYQLPDG 61 (83)
T ss_pred CCHHHeEEEEECCEEEEEEEEccc--c-CCCCEEEEEEEEEEECCCC
Confidence 889999888889999999875321 0 2234556688888888753
No 49
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=21.10 E-value=1.7e+02 Score=21.64 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=21.4
Q ss_pred CCccEEEEEEECCCcEEEEECCeEEEEE
Q 028023 126 SEGFHEYVIKWGPDLIQWLIDGKVVRRA 153 (215)
Q Consensus 126 ~~~fH~Y~idWtp~~I~fyvDG~~v~~~ 153 (215)
.++-|++.+. ..+..+.+|||+++-..
T Consensus 56 ~~G~y~f~~~-~~~~~~l~Idg~~vid~ 82 (136)
T smart00758 56 EDGEYTFSIT-SDDGARLWIDGKLVIDN 82 (136)
T ss_pred CCccEEEEEE-cCCcEEEEECCcEEEcC
Confidence 4567888884 78899999999988753
Done!