BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028024
         (215 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6AE15|HIS4_LEIXX 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase OS=Leifsonia xyli
           subsp. xyli (strain CTCB07) GN=hisA PE=3 SV=1
          Length = 248

 Score = 32.3 bits (72), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 130 QIFVMSQNISDALKENLAWATYVLLRNTNSISVLISIRG-ELCVRGYWQTPDGASKTQLL 188
           +I     N+  A  EN  WA++V+ +   +I+V + +RG  L  RG+  T +G    Q+L
Sbjct: 102 EIGATRVNLGTAALENPEWASHVIGQYGEAIAVGLDVRGTTLAARGW--TREGGDLWQVL 159

Query: 189 EWFE 192
           E  E
Sbjct: 160 ERLE 163


>sp|Q46793|YGEN_ECOLI Putative uncharacterized protein YgeN OS=Escherichia coli (strain
           K12) GN=ygeN PE=5 SV=3
          Length = 235

 Score = 31.6 bits (70), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 133 VMSQNISDALKENLAWATYVLLRNTNSISVLISIRGELCVRGYWQTPDGASK 184
           V+ + ISD LKE ++    +LL  T  I  +   R E  ++GY+   DG +K
Sbjct: 18  VIKRKISDGLKEIVSLKEKILLETTAKIQSIEEKREEKFIQGYY---DGYTK 66


>sp|Q851L8|CESA5_ORYSJ Probable cellulose synthase A catalytic subunit 5 [UDP-forming]
           OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1
          Length = 1092

 Score = 30.4 bits (67), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 24  RKSFSICARLDNSQQEEQQLNLSVLRFTFG-IPGFDESYLPRWIGYGFGSLIVLNHFAFS 82
           R +F   A L+ S +  Q     VLR+  G I  F  ++ P W GYG G L  L  F++ 
Sbjct: 813 RAAFKGSAPLNLSDRLHQ-----VLRWALGSIEIFFSNHCPLWYGYG-GGLKCLERFSYI 866

Query: 83  NSVT 86
           NS+ 
Sbjct: 867 NSIV 870


>sp|A2XNT2|CESA5_ORYSI Probable cellulose synthase A catalytic subunit 5 [UDP-forming]
           OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1
          Length = 1092

 Score = 30.4 bits (67), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 24  RKSFSICARLDNSQQEEQQLNLSVLRFTFG-IPGFDESYLPRWIGYGFGSLIVLNHFAFS 82
           R +F   A L+ S +  Q     VLR+  G I  F  ++ P W GYG G L  L  F++ 
Sbjct: 813 RAAFKGSAPLNLSDRLHQ-----VLRWALGSIEIFFSNHCPLWYGYG-GGLKCLERFSYI 866

Query: 83  NSVT 86
           NS+ 
Sbjct: 867 NSIV 870


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,954,464
Number of Sequences: 539616
Number of extensions: 2795805
Number of successful extensions: 6294
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6294
Number of HSP's gapped (non-prelim): 7
length of query: 215
length of database: 191,569,459
effective HSP length: 113
effective length of query: 102
effective length of database: 130,592,851
effective search space: 13320470802
effective search space used: 13320470802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)