Query 028024
Match_columns 215
No_of_seqs 89 out of 91
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 07:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028024.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028024hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dcfa1 e.3.1.1 (A:5-392) 6-am 63.1 7.1 0.00052 32.4 6.5 26 151-176 70-95 (388)
2 d2hdsa1 e.3.1.1 (A:4-361) AMPC 34.6 30 0.0022 27.1 5.6 57 157-214 22-95 (358)
3 d2veaa2 d.110.2.4 (A:327-514) 32.7 20 0.0014 27.5 4.0 52 146-199 26-78 (188)
4 d2drwa1 e.3.1.1 (A:2-363) D-Am 23.0 62 0.0045 25.4 5.5 60 153-213 15-92 (362)
5 d3c2wa2 d.110.2.4 (A:310-494) 19.4 41 0.003 25.5 3.5 45 152-199 36-81 (185)
6 d2aj7a1 b.158.1.1 (A:1-148) Hy 18.2 21 0.0015 26.7 1.4 16 46-61 18-33 (148)
7 d1onha_ e.3.1.1 (A:) AMPC beta 15.8 1.2E+02 0.0088 23.5 5.8 57 156-213 23-96 (363)
8 d1n0wa_ c.37.1.11 (A:) DNA rep 15.1 6.5 0.00047 27.1 -2.2 15 47-61 2-16 (242)
9 d1yqsa1 e.3.1.1 (A:3-347) D-al 14.6 2.1E+02 0.015 21.7 6.9 61 152-213 16-93 (345)
10 d1wxxa1 b.122.1.9 (A:1-64) Hyp 14.3 98 0.0071 19.7 3.9 22 161-182 34-55 (64)
No 1
>d2dcfa1 e.3.1.1 (A:5-392) 6-aminohexanoate-dimer hydrolase NylC {Flavobacterium sp. [TaxId: 239]}
Probab=63.06 E-value=7.1 Score=32.37 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=21.0
Q ss_pred HHHhhhccccEEEEEECCEEEEEeee
Q 028024 151 YVLLRNTNSISVLISIRGELCVRGYW 176 (215)
Q Consensus 151 ~~LLtnT~a~svlV~~~g~~l~RG~l 176 (215)
..+|..|.+.++||.++|+++.--+.
T Consensus 70 ~~~l~~~~t~a~lV~~~G~iv~E~y~ 95 (388)
T d2dcfa1 70 EQRLEQTYTDAFLVLRGTEVVAEYYR 95 (388)
T ss_dssp HHHHHHTTEEEEEEEETTEEEEEEEC
T ss_pred HHHHHhcCCcEEEEEECCEEEEEEec
Confidence 45568999999999999999863343
No 2
>d2hdsa1 e.3.1.1 (A:4-361) AMPC beta-Lactamase, class C {Escherichia coli, cephalosporinase [TaxId: 562]}
Probab=34.58 E-value=30 Score=27.07 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=33.9
Q ss_pred ccccEEEEEECCEEEE--EeeecCC------CC-------CChhHHHHHHHHhccccccccCCccc--cccCCCC
Q 028024 157 TNSISVLISIRGELCV--RGYWQTP------DG-------ASKTQLLEWFERQIENIGLSDLKDSL--YFPQSAG 214 (215)
Q Consensus 157 T~a~svlV~~~g~~l~--RG~l~~p------~d-------~~~g~I~~~~~~~~~~~yLanL~~~~--Yfp~~~~ 214 (215)
.+-.+|.|+.+|+++. .|+-+.. .| ++|.-..--++.- .+.+..||.+++ |+|+..+
T Consensus 22 ipG~~v~v~~~g~~~~~~~G~~~~~~~~~~~~dt~f~iaS~tK~~ta~~i~~l-v~~G~l~ld~~v~~ylp~~~~ 95 (358)
T d2hdsa1 22 IPGMAVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDA-IARGEIKLSDPTTKYWPELTA 95 (358)
T ss_dssp CSEEEEEEEETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHH-HHTTSCCTTSBHHHHCTTCCC
T ss_pred CCeEEEEEEECCEEEEEeEEeeccccCCCCCCCCEEeccchHHHHHHHHHHHH-HhcCCcccchhhhhhcccccc
Confidence 5677899999999864 5765332 11 3443222222332 233445898888 9998753
No 3
>d2veaa2 d.110.2.4 (A:327-514) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=32.67 E-value=20 Score=27.54 Aligned_cols=52 Identities=29% Similarity=0.330 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhccccEEEEEECCEEEEEeeecCCCCCChhHHHHHHHHhcc-ccc
Q 028024 146 LAWATYVLLRNTNSISVLISIRGELCVRGYWQTPDGASKTQLLEWFERQIE-NIG 199 (215)
Q Consensus 146 LAWaS~~LLtnT~a~svlV~~~g~~l~RG~l~~p~d~~~g~I~~~~~~~~~-~~y 199 (215)
|.--..-|+.-.+|.++.|+++|++..-|- .|++-....|++|+..... +.|
T Consensus 26 l~~~~~~ll~l~~A~G~al~~~~~~~~~G~--~P~~~~i~~L~~wl~~~~~~~~~ 78 (188)
T d2veaa2 26 LTNHPDRLLGLTGSQGAAICFGEKLILVGE--TPDEKAVQYLLQWLENREVQDVF 78 (188)
T ss_dssp HHTCHHHHHHTTTCSEEEEEETTEEEEEES--CCCHHHHHHHHHHHHHTTCCSCE
T ss_pred HHhCCHHHHhhcCCCEEEEEECCEEEEeCC--CcCHHHHHHHHHHHHhcCCCCce
Confidence 444567899999999999999999988884 4545566788999887654 444
No 4
>d2drwa1 e.3.1.1 (A:2-363) D-Amino acid amidase DaaA {Ochrobactrum anthropi [TaxId: 529]}
Probab=23.04 E-value=62 Score=25.36 Aligned_cols=60 Identities=20% Similarity=0.406 Sum_probs=34.7
Q ss_pred HhhhccccEEEEEECCEEEE---EeeecCC------CC-------CChhHHHHHHHHhccccccccCCccc--cccCCC
Q 028024 153 LLRNTNSISVLISIRGELCV---RGYWQTP------DG-------ASKTQLLEWFERQIENIGLSDLKDSL--YFPQSA 213 (215)
Q Consensus 153 LLtnT~a~svlV~~~g~~l~---RG~l~~p------~d-------~~~g~I~~~~~~~~~~~yLanL~~~~--Yfp~~~ 213 (215)
+-..-+..+|.|+.+|+++. .|+.... .+ ++|.-..--+++-.++ +..||.|++ |+|+..
T Consensus 15 ~~~g~~g~~v~v~~~g~~v~~~~~G~ad~~~~~p~t~dt~f~i~SvsK~~ta~~i~~lve~-G~l~ldd~v~~ylp~~~ 92 (362)
T d2drwa1 15 VARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQD-GTVDLDEPITRWFPDLP 92 (362)
T ss_dssp HTTTCCEEEEEEECTTSCEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHT-TSCCTTSBGGGTCTTST
T ss_pred HHcCCCeEEEEEEECCEEEEEEeEEEeccccCCCCCCCCeEEeeehHHHHHHHHHHHHHHc-CCCCCCceeeeeecccc
Confidence 33455677889999999642 6765321 11 3444333333333333 334888777 889864
No 5
>d3c2wa2 d.110.2.4 (A:310-494) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=19.41 E-value=41 Score=25.50 Aligned_cols=45 Identities=13% Similarity=0.057 Sum_probs=32.8
Q ss_pred HHhhhccccEEEEEECCEEEEEeeecCCCCCChhHHHHHHHHhcc-ccc
Q 028024 152 VLLRNTNSISVLISIRGELCVRGYWQTPDGASKTQLLEWFERQIE-NIG 199 (215)
Q Consensus 152 ~LLtnT~a~svlV~~~g~~l~RG~l~~p~d~~~g~I~~~~~~~~~-~~y 199 (215)
.|++=..|.+++|+++|++...| .|++.....+++|+..+.. +.|
T Consensus 36 ~ll~l~~AdG~ai~~~g~~~~~g---~p~~~~i~~l~~wl~~~~~~~v~ 81 (185)
T d3c2wa2 36 GIAALIPCDGALVMLGGRTLSIR---GDFERQAGNVLQRLQRDPERDIY 81 (185)
T ss_dssp SHHHHTTCSEEEEEETTEEEEES---SCCHHHHHHHHHHHTTSTTCCEE
T ss_pred HHHhhhCCCEEEEEECCEEEEcC---CCCHHHHHHHHHHHhhCCCCCeE
Confidence 47888999999999999986555 3545566788888865433 344
No 6
>d2aj7a1 b.158.1.1 (A:1-148) Hypothetical protein BH3618 {Bacillus halodurans [TaxId: 86665]}
Probab=18.19 E-value=21 Score=26.70 Aligned_cols=16 Identities=31% Similarity=0.779 Sum_probs=13.7
Q ss_pred eeeeeecCCCCCCCCC
Q 028024 46 SVLRFTFGIPGFDESY 61 (215)
Q Consensus 46 sv~Rftlgipg~dd~~ 61 (215)
.++.|.-|||||.|-+
T Consensus 18 ~ii~Fp~Gi~GFe~~~ 33 (148)
T d2aj7a1 18 RLIAFDQGIPAFEDEK 33 (148)
T ss_dssp GEEECTTCBTTBTTCC
T ss_pred cEEEcCCCCCCCCccc
Confidence 4799999999998754
No 7
>d1onha_ e.3.1.1 (A:) AMPC beta-Lactamase, class C {Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]}
Probab=15.85 E-value=1.2e+02 Score=23.46 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=32.8
Q ss_pred hccccEEEEEECCEEEE--EeeecCC------CC-------CChhHHHHHHHHhccccccccCCccc--cccCCC
Q 028024 156 NTNSISVLISIRGELCV--RGYWQTP------DG-------ASKTQLLEWFERQIENIGLSDLKDSL--YFPQSA 213 (215)
Q Consensus 156 nT~a~svlV~~~g~~l~--RG~l~~p------~d-------~~~g~I~~~~~~~~~~~yLanL~~~~--Yfp~~~ 213 (215)
..+..+|.|..+|+++. -|+.... .+ ++|. +..-+.-+..+.+..+|.|++ |+|+..
T Consensus 23 ~~pG~~v~V~~~g~~~~~~~G~~~~~~~~p~~~dT~f~iaSitK~-~ta~~i~~L~e~G~l~lddpv~~ylp~~~ 96 (363)
T d1onha_ 23 SVPGMAVAVIYQGKPHYYTFGKADIAANKPVTPQTLFELGSISKT-FTGVLGGDAIARGEISLDDPVTRYWPQLT 96 (363)
T ss_dssp TCSEEEEEEEETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHH-HHHHHHHHHHHHTSCCTTSBGGGTCTTCC
T ss_pred CCCeEEEEEEECCEEEEEeEEecccCCCCCCCCCCEEEeeehHHH-HHHHHHHHHHhcCcceeeeccchhhhhcc
Confidence 35777889999999864 5664321 11 3443 222233233334455887765 899875
No 8
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.11 E-value=6.5 Score=27.09 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=12.2
Q ss_pred eeeeecCCCCCCCCC
Q 028024 47 VLRFTFGIPGFDESY 61 (215)
Q Consensus 47 v~Rftlgipg~dd~~ 61 (215)
+.|++-|||+||+-.
T Consensus 2 ~~ri~TG~~~LD~ll 16 (242)
T d1n0wa_ 2 IIQITTGSKELDKLL 16 (242)
T ss_dssp CCEECCSCHHHHHHT
T ss_pred CCEEcCCCHHHHHhh
Confidence 579999999999743
No 9
>d1yqsa1 e.3.1.1 (A:3-347) D-ala carboxypeptidase/transpeptidase {Streptomyces sp., R61 [TaxId: 1931]}
Probab=14.55 E-value=2.1e+02 Score=21.73 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=33.1
Q ss_pred HHhhhccccEEEEEECCEEEE--EeeecCCC------C-------CChhHHHHHHHHhccccccccCCcc--ccccCCC
Q 028024 152 VLLRNTNSISVLISIRGELCV--RGYWQTPD------G-------ASKTQLLEWFERQIENIGLSDLKDS--LYFPQSA 213 (215)
Q Consensus 152 ~LLtnT~a~svlV~~~g~~l~--RG~l~~p~------d-------~~~g~I~~~~~~~~~~~yLanL~~~--~Yfp~~~ 213 (215)
++-.+.+..+|+|..+|++.. .|+..... + ++|.-.---+++-.+ .+..||.|+ -|+|+..
T Consensus 16 ~~~~~~pG~~v~v~~~g~~~~~~~G~~d~~~~~~~t~~t~f~i~SvsK~~ta~~i~~lv~-~G~l~ldd~v~~~lp~~~ 93 (345)
T d1yqsa1 16 ALSQGAPGAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVD-EGKLDLDASVNTYLPGLL 93 (345)
T ss_dssp HHHTTCSEEEEEEEETTEEEEEEEEBSCTTTCCBCCTTCBEECGGGHHHHHHHHHHHHHH-TTSCCTTSBHHHHSTTCS
T ss_pred HHHCCCCeEEEEEEECCEEEEEeEEEEeccCCCCCCCCCEEEchhhhHHHHHHHHHHHHH-hhccccccchhhcccccC
Confidence 344566777788889998753 77653211 1 233333333333333 334478765 4788764
No 10
>d1wxxa1 b.122.1.9 (A:1-64) Hypothetical protein TTHA1280, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=14.27 E-value=98 Score=19.66 Aligned_cols=22 Identities=0% Similarity=-0.090 Sum_probs=17.1
Q ss_pred EEEEEECCEEEEEeeecCCCCC
Q 028024 161 SVLISIRGELCVRGYWQTPDGA 182 (215)
Q Consensus 161 svlV~~~g~~l~RG~l~~p~d~ 182 (215)
.++|+++|+.+.+|++++.+.+
T Consensus 34 ~~~v~~~~~~lg~g~~np~S~I 55 (64)
T d1wxxa1 34 LYPVYWGRRFLALALYNPHTDL 55 (64)
T ss_dssp EEEEEETTEEEEEEEECTTSSS
T ss_pred eEEEEECCcEEEEEEECCCCCE
Confidence 4566788887889999988664
Done!