Query 028025
Match_columns 215
No_of_seqs 118 out of 1237
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 05:05:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3079 Uridylate kinase/adeny 100.0 6.6E-35 1.4E-39 200.8 22.7 185 17-202 4-193 (195)
2 PLN02674 adenylate kinase 100.0 3.1E-33 6.8E-38 206.6 23.3 183 18-200 28-243 (244)
3 PRK14531 adenylate kinase; Pro 100.0 7.1E-32 1.5E-36 194.4 23.2 178 21-200 2-182 (183)
4 PLN02459 probable adenylate ki 100.0 9.5E-32 2.1E-36 199.4 23.9 191 13-205 21-254 (261)
5 PLN02200 adenylate kinase fami 100.0 1.4E-31 3E-36 198.8 23.9 190 15-204 37-226 (234)
6 PRK13808 adenylate kinase; Pro 100.0 1.3E-31 2.8E-36 205.2 22.0 184 22-205 1-196 (333)
7 PRK14532 adenylate kinase; Pro 100.0 5.7E-31 1.2E-35 190.8 23.4 180 23-202 2-187 (188)
8 PRK14527 adenylate kinase; Pro 100.0 5.4E-31 1.2E-35 191.2 23.1 183 18-200 3-190 (191)
9 PRK14528 adenylate kinase; Pro 100.0 7.4E-31 1.6E-35 189.2 23.1 179 22-200 2-186 (186)
10 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 8.4E-31 1.8E-35 189.3 22.9 178 23-200 1-182 (183)
11 TIGR01351 adk adenylate kinase 100.0 2.3E-30 4.9E-35 190.6 22.8 177 24-201 2-210 (210)
12 PRK14529 adenylate kinase; Pro 100.0 1.5E-30 3.3E-35 190.3 21.4 179 22-200 1-222 (223)
13 PRK00279 adk adenylate kinase; 100.0 1.3E-29 2.9E-34 187.1 22.7 181 22-202 1-214 (215)
14 PRK02496 adk adenylate kinase; 100.0 3.6E-29 7.9E-34 180.8 24.1 178 22-201 2-183 (184)
15 PRK14526 adenylate kinase; Pro 100.0 1.8E-29 3.9E-34 184.4 22.4 179 23-203 2-210 (211)
16 PTZ00088 adenylate kinase 1; P 100.0 6.4E-29 1.4E-33 183.4 23.6 179 19-199 4-228 (229)
17 TIGR01360 aden_kin_iso1 adenyl 100.0 7.5E-28 1.6E-32 174.6 24.6 182 20-202 2-187 (188)
18 PRK14530 adenylate kinase; Pro 100.0 2.1E-27 4.5E-32 175.5 22.1 176 22-202 4-213 (215)
19 cd01428 ADK Adenylate kinase ( 100.0 3.7E-27 8E-32 171.8 19.6 168 23-191 1-193 (194)
20 COG0563 Adk Adenylate kinase a 100.0 2.2E-26 4.7E-31 163.6 20.8 172 22-200 1-177 (178)
21 PF00406 ADK: Adenylate kinase 100.0 1.2E-26 2.5E-31 162.5 18.7 146 26-178 1-150 (151)
22 PLN02842 nucleotide kinase 99.9 4.8E-26 1E-30 182.6 19.5 180 25-207 1-207 (505)
23 KOG3078 Adenylate kinase [Nucl 99.9 2.2E-22 4.9E-27 145.8 17.6 185 20-206 14-228 (235)
24 PRK01184 hypothetical protein; 99.9 4.2E-19 9.1E-24 128.2 20.9 170 22-203 2-179 (184)
25 COG1102 Cmk Cytidylate kinase 99.8 1.3E-18 2.9E-23 118.0 16.3 169 22-205 1-175 (179)
26 PRK13973 thymidylate kinase; P 99.8 5.3E-18 1.2E-22 125.0 19.1 174 21-204 3-208 (213)
27 PRK03839 putative kinase; Prov 99.8 6E-18 1.3E-22 121.8 15.5 153 22-205 1-156 (180)
28 PRK06762 hypothetical protein; 99.8 3.7E-17 8E-22 116.2 19.2 158 20-201 1-163 (166)
29 PRK04040 adenylate kinase; Pro 99.8 9.6E-18 2.1E-22 120.8 16.0 172 21-200 2-187 (188)
30 PRK06217 hypothetical protein; 99.8 1.4E-17 3.1E-22 120.0 17.0 161 22-202 2-179 (183)
31 PRK13975 thymidylate kinase; P 99.8 5.3E-17 1.2E-21 118.5 18.2 171 21-203 2-191 (196)
32 PHA02530 pseT polynucleotide k 99.8 1.2E-17 2.5E-22 129.7 12.5 164 21-191 2-171 (300)
33 COG0125 Tmk Thymidylate kinase 99.8 1.8E-16 4E-21 115.0 17.6 174 20-204 2-205 (208)
34 PRK13949 shikimate kinase; Pro 99.8 3E-16 6.5E-21 111.3 18.4 160 23-199 3-168 (169)
35 PLN02924 thymidylate kinase 99.8 1.4E-16 3E-21 117.4 17.1 171 18-204 13-205 (220)
36 PRK13974 thymidylate kinase; P 99.8 5.6E-17 1.2E-21 119.5 14.9 174 21-203 3-207 (212)
37 PRK08233 hypothetical protein; 99.7 2.7E-17 5.7E-22 118.6 12.2 168 20-201 2-176 (182)
38 PRK14730 coaE dephospho-CoA ki 99.7 1.2E-16 2.6E-21 115.9 15.4 163 22-201 2-193 (195)
39 COG0703 AroK Shikimate kinase 99.7 1.1E-16 2.5E-21 111.3 14.2 165 22-202 3-168 (172)
40 COG0283 Cmk Cytidylate kinase 99.7 1.8E-16 3.9E-21 113.1 15.2 172 20-201 3-218 (222)
41 PRK00081 coaE dephospho-CoA ki 99.7 1.2E-16 2.6E-21 116.1 14.8 162 22-201 3-192 (194)
42 PRK04182 cytidylate kinase; Pr 99.7 4.9E-16 1.1E-20 111.8 17.9 167 22-204 1-175 (180)
43 PRK08356 hypothetical protein; 99.7 1.2E-16 2.7E-21 116.3 14.7 169 21-202 5-192 (195)
44 PRK00131 aroK shikimate kinase 99.7 2.7E-16 5.7E-21 112.7 15.8 171 18-204 1-173 (175)
45 TIGR02173 cyt_kin_arch cytidyl 99.7 1.5E-15 3.3E-20 108.3 19.1 163 22-200 1-170 (171)
46 PRK13948 shikimate kinase; Pro 99.7 3.7E-16 7.9E-21 111.7 15.6 166 19-202 8-175 (182)
47 PRK00698 tmk thymidylate kinas 99.7 1.7E-15 3.6E-20 111.3 19.0 168 20-202 2-202 (205)
48 cd01672 TMPK Thymidine monopho 99.7 2E-15 4.3E-20 110.4 19.1 167 22-201 1-199 (200)
49 TIGR00041 DTMP_kinase thymidyl 99.7 8.8E-16 1.9E-20 111.9 16.6 166 21-196 3-195 (195)
50 COG1936 Predicted nucleotide k 99.7 6.8E-16 1.5E-20 106.3 14.2 154 22-202 1-156 (180)
51 COG1428 Deoxynucleoside kinase 99.7 2.1E-16 4.4E-21 112.5 11.9 32 20-51 3-34 (216)
52 PRK13946 shikimate kinase; Pro 99.7 1.8E-15 3.8E-20 109.2 16.9 166 20-206 9-180 (184)
53 PRK14734 coaE dephospho-CoA ki 99.7 1.4E-15 3.1E-20 110.7 16.4 166 22-205 2-197 (200)
54 TIGR01313 therm_gnt_kin carboh 99.7 1.9E-15 4.2E-20 107.0 16.6 156 24-200 1-161 (163)
55 PRK14733 coaE dephospho-CoA ki 99.7 2.6E-15 5.6E-20 108.9 17.3 168 19-203 4-199 (204)
56 cd02030 NDUO42 NADH:Ubiquinone 99.7 2.2E-15 4.7E-20 111.6 17.0 172 23-198 1-217 (219)
57 PRK08118 topology modulation p 99.7 5E-16 1.1E-20 110.0 12.4 98 22-144 2-99 (167)
58 PRK13947 shikimate kinase; Pro 99.7 1.6E-15 3.4E-20 108.3 15.1 162 23-201 3-167 (171)
59 PRK03731 aroL shikimate kinase 99.7 4.9E-15 1.1E-19 105.7 17.4 164 22-202 3-170 (171)
60 PRK14731 coaE dephospho-CoA ki 99.7 1.4E-15 3.1E-20 111.6 14.3 167 19-203 3-203 (208)
61 COG2019 AdkA Archaeal adenylat 99.7 5.5E-15 1.2E-19 101.0 15.7 172 21-202 4-188 (189)
62 PRK07933 thymidylate kinase; V 99.7 4.7E-15 1E-19 109.1 16.7 171 22-200 1-211 (213)
63 PRK05057 aroK shikimate kinase 99.7 4.2E-15 9.1E-20 105.9 15.9 164 20-201 3-170 (172)
64 PRK12339 2-phosphoglycerate ki 99.7 1.6E-14 3.5E-19 104.6 18.6 173 20-200 2-195 (197)
65 PRK10078 ribose 1,5-bisphospho 99.7 5.6E-15 1.2E-19 106.8 15.7 168 21-207 2-181 (186)
66 COG0237 CoaE Dephospho-CoA kin 99.7 9.5E-15 2.1E-19 105.6 15.6 166 21-205 2-195 (201)
67 PF02223 Thymidylate_kin: Thym 99.7 2.2E-15 4.7E-20 109.1 12.4 160 26-196 1-186 (186)
68 PF13671 AAA_33: AAA domain; P 99.7 2.5E-15 5.5E-20 104.1 11.9 113 23-144 1-118 (143)
69 PLN02422 dephospho-CoA kinase 99.7 9.4E-15 2E-19 107.8 15.4 163 23-203 3-195 (232)
70 PRK00625 shikimate kinase; Pro 99.7 1E-14 2.2E-19 103.5 15.1 112 22-144 1-116 (173)
71 PRK14732 coaE dephospho-CoA ki 99.7 4E-15 8.7E-20 107.9 13.2 163 23-203 1-191 (196)
72 PTZ00451 dephospho-CoA kinase; 99.6 1.2E-14 2.5E-19 108.3 14.9 166 22-203 2-208 (244)
73 TIGR00152 dephospho-CoA kinase 99.6 1.1E-14 2.5E-19 105.4 14.5 157 23-197 1-187 (188)
74 COG3265 GntK Gluconate kinase 99.6 2.1E-14 4.6E-19 96.2 14.4 154 27-202 1-159 (161)
75 PRK13976 thymidylate kinase; P 99.6 6.6E-14 1.4E-18 102.5 18.2 166 22-204 1-203 (209)
76 PRK12338 hypothetical protein; 99.6 3.4E-14 7.3E-19 108.9 16.9 181 18-205 1-207 (319)
77 PRK13477 bifunctional pantoate 99.6 1.5E-14 3.2E-19 117.8 15.7 173 19-202 282-503 (512)
78 KOG3354 Gluconate kinase [Carb 99.6 2.9E-14 6.2E-19 96.2 13.8 161 21-202 12-188 (191)
79 TIGR03574 selen_PSTK L-seryl-t 99.6 1.4E-14 3E-19 109.5 13.9 160 23-202 1-169 (249)
80 cd00227 CPT Chloramphenicol (C 99.6 8.7E-14 1.9E-18 99.6 16.1 160 21-200 2-174 (175)
81 PRK14737 gmk guanylate kinase; 99.6 2.9E-14 6.2E-19 102.6 13.5 168 19-203 2-185 (186)
82 TIGR00017 cmk cytidylate kinas 99.6 8.2E-14 1.8E-18 102.6 16.2 170 21-199 2-216 (217)
83 cd02022 DPCK Dephospho-coenzym 99.6 1.1E-14 2.3E-19 104.6 11.1 128 23-162 1-156 (179)
84 PLN02199 shikimate kinase 99.6 1.5E-13 3.1E-18 103.8 17.3 174 20-207 101-293 (303)
85 PRK08154 anaerobic benzoate ca 99.6 9.1E-14 2E-18 107.9 16.4 166 18-203 130-302 (309)
86 KOG3347 Predicted nucleotide k 99.6 6.1E-14 1.3E-18 94.1 12.9 156 21-200 7-164 (176)
87 PRK05480 uridine/cytidine kina 99.6 4.6E-14 9.9E-19 104.0 13.6 175 18-201 3-207 (209)
88 PF01121 CoaE: Dephospho-CoA k 99.6 1E-14 2.3E-19 104.0 9.7 152 22-191 1-180 (180)
89 PRK05541 adenylylsulfate kinas 99.6 8.4E-14 1.8E-18 99.8 14.5 161 18-202 4-172 (176)
90 cd02020 CMPK Cytidine monophos 99.6 3.7E-14 8E-19 98.6 12.3 144 23-185 1-146 (147)
91 cd01673 dNK Deoxyribonucleosid 99.6 5.1E-14 1.1E-18 102.5 12.7 116 23-144 1-145 (193)
92 PRK14021 bifunctional shikimat 99.6 1.1E-13 2.4E-18 114.8 16.2 172 18-202 3-176 (542)
93 cd02021 GntK Gluconate kinase 99.6 1.9E-13 4.2E-18 95.4 15.1 128 23-163 1-135 (150)
94 COG0529 CysC Adenylylsulfate k 99.6 1.1E-13 2.4E-18 95.6 13.3 168 15-202 17-191 (197)
95 COG4088 Predicted nucleotide k 99.6 2.7E-14 5.9E-19 101.0 10.1 113 22-144 2-122 (261)
96 COG0194 Gmk Guanylate kinase [ 99.6 8.5E-14 1.8E-18 97.4 12.5 164 20-202 3-182 (191)
97 KOG3220 Similar to bacterial d 99.6 3.8E-13 8.1E-18 94.8 15.7 164 22-203 2-195 (225)
98 KOG3327 Thymidylate kinase/ade 99.6 1.7E-13 3.7E-18 95.1 13.3 176 18-206 2-199 (208)
99 PRK14738 gmk guanylate kinase; 99.6 6.2E-14 1.3E-18 102.8 11.9 170 17-203 9-195 (206)
100 cd00464 SK Shikimate kinase (S 99.6 4E-13 8.7E-18 94.2 15.3 109 24-144 2-112 (154)
101 TIGR02322 phosphon_PhnN phosph 99.6 5.1E-13 1.1E-17 96.0 15.5 162 22-202 2-178 (179)
102 KOG3877 NADH:ubiquinone oxidor 99.5 4.9E-13 1.1E-17 98.6 15.3 173 20-199 70-294 (393)
103 PRK09825 idnK D-gluconate kina 99.5 2.4E-13 5.2E-18 97.1 12.7 164 21-205 3-171 (176)
104 PRK03333 coaE dephospho-CoA ki 99.5 2.7E-13 5.8E-18 108.4 14.4 166 22-204 2-194 (395)
105 PF01202 SKI: Shikimate kinase 99.5 4.6E-13 9.9E-18 94.2 14.0 155 30-201 1-158 (158)
106 PRK00023 cmk cytidylate kinase 99.5 6.4E-13 1.4E-17 98.6 15.4 172 21-202 4-221 (225)
107 PRK11860 bifunctional 3-phosph 99.5 7.4E-13 1.6E-17 112.6 17.5 171 20-202 441-655 (661)
108 COG0572 Udk Uridine kinase [Nu 99.5 1.3E-13 2.9E-18 99.5 10.6 146 19-177 6-178 (218)
109 PRK07261 topology modulation p 99.5 7.4E-14 1.6E-18 99.4 9.1 99 22-144 1-99 (171)
110 smart00072 GuKc Guanylate kina 99.5 1.5E-13 3.2E-18 99.2 10.3 163 21-202 2-182 (184)
111 PRK06547 hypothetical protein; 99.5 4.3E-14 9.4E-19 100.3 6.9 126 16-144 10-138 (172)
112 PRK11545 gntK gluconate kinase 99.5 2.2E-12 4.7E-17 91.2 15.0 155 27-202 1-160 (163)
113 PF13207 AAA_17: AAA domain; P 99.5 6E-14 1.3E-18 94.4 5.7 106 23-144 1-110 (121)
114 PRK04220 2-phosphoglycerate ki 99.5 4.3E-12 9.3E-17 96.6 15.9 176 19-203 90-291 (301)
115 PTZ00301 uridine kinase; Provi 99.5 6E-13 1.3E-17 97.3 10.6 169 21-201 3-204 (210)
116 PF07931 CPT: Chloramphenicol 99.5 1.4E-11 3.1E-16 87.1 16.6 164 22-200 2-173 (174)
117 TIGR03263 guanyl_kin guanylate 99.5 1.3E-12 2.7E-17 94.1 11.5 163 22-201 2-179 (180)
118 TIGR00455 apsK adenylylsulfate 99.5 7.8E-12 1.7E-16 90.3 15.3 159 19-200 16-184 (184)
119 PRK09518 bifunctional cytidyla 99.5 1.9E-12 4.2E-17 111.0 14.1 174 22-208 2-237 (712)
120 PRK12269 bifunctional cytidyla 99.4 3.6E-12 7.9E-17 109.8 15.3 44 18-61 31-74 (863)
121 PRK00300 gmk guanylate kinase; 99.4 7.7E-12 1.7E-16 91.9 15.2 168 19-203 3-185 (205)
122 PRK00889 adenylylsulfate kinas 99.4 8E-12 1.7E-16 89.5 14.7 161 20-202 3-170 (175)
123 PF08433 KTI12: Chromatin asso 99.4 2.7E-12 5.8E-17 97.4 12.6 158 22-196 2-169 (270)
124 PRK06696 uridine kinase; Valid 99.4 7.3E-13 1.6E-17 98.5 9.3 121 17-144 18-167 (223)
125 PRK05416 glmZ(sRNA)-inactivati 99.4 3.2E-11 7E-16 92.2 17.9 150 20-202 5-160 (288)
126 TIGR01663 PNK-3'Pase polynucle 99.4 9.9E-12 2.1E-16 101.9 15.6 102 17-144 365-468 (526)
127 TIGR00235 udk uridine kinase. 99.4 3.4E-12 7.4E-17 93.8 10.7 174 18-201 3-203 (207)
128 PF01583 APS_kinase: Adenylyls 99.4 5.8E-12 1.3E-16 87.1 10.9 112 20-142 1-118 (156)
129 PRK12337 2-phosphoglycerate ki 99.4 6.9E-11 1.5E-15 94.6 18.4 177 19-201 253-460 (475)
130 PRK13951 bifunctional shikimat 99.4 1.6E-11 3.5E-16 100.6 14.7 151 22-197 1-156 (488)
131 PRK03846 adenylylsulfate kinas 99.4 2.3E-11 5E-16 88.8 14.0 158 18-202 21-192 (198)
132 PF13238 AAA_18: AAA domain; P 99.4 3.6E-12 7.8E-17 86.5 8.9 106 24-144 1-112 (129)
133 PRK05537 bifunctional sulfate 99.4 1.2E-11 2.5E-16 103.1 13.6 165 19-202 390-562 (568)
134 PRK07667 uridine kinase; Provi 99.4 8.7E-12 1.9E-16 90.6 11.2 131 19-160 15-171 (193)
135 cd02023 UMPK Uridine monophosp 99.4 1.3E-11 2.9E-16 90.1 11.4 35 23-57 1-38 (198)
136 PLN02348 phosphoribulokinase 99.3 8.4E-12 1.8E-16 98.0 10.1 133 19-161 47-220 (395)
137 COG2074 2-phosphoglycerate kin 99.3 1.3E-10 2.8E-15 84.9 15.2 178 17-204 85-289 (299)
138 PF03668 ATP_bind_2: P-loop AT 99.3 3.1E-10 6.7E-15 85.3 17.1 149 22-202 2-156 (284)
139 PF00485 PRK: Phosphoribulokin 99.3 1.2E-12 2.7E-17 95.2 4.2 109 23-144 1-147 (194)
140 COG0645 Predicted kinase [Gene 99.3 2.5E-10 5.3E-15 79.0 15.1 117 22-144 2-124 (170)
141 cd02024 NRK1 Nicotinamide ribo 99.3 7E-12 1.5E-16 89.9 7.0 36 23-58 1-37 (187)
142 PRK05506 bifunctional sulfate 99.3 1.1E-10 2.3E-15 99.2 14.0 162 19-202 458-628 (632)
143 cd02027 APSK Adenosine 5'-phos 99.3 2.3E-10 5.1E-15 79.6 13.4 109 23-143 1-116 (149)
144 PLN02772 guanylate kinase 99.3 1.6E-10 3.5E-15 90.8 13.9 169 20-202 134-318 (398)
145 COG3709 Uncharacterized compon 99.3 5.2E-10 1.1E-14 76.4 14.2 165 20-203 4-183 (192)
146 PF06414 Zeta_toxin: Zeta toxi 99.3 2E-11 4.3E-16 89.2 8.1 118 17-144 11-141 (199)
147 PF00625 Guanylate_kin: Guanyl 99.3 1.3E-10 2.8E-15 83.8 11.9 164 20-201 1-181 (183)
148 KOG3308 Uncharacterized protei 99.3 1.2E-10 2.7E-15 82.2 11.3 176 19-206 2-208 (225)
149 PRK15453 phosphoribulokinase; 99.2 4.8E-11 1E-15 89.8 8.9 39 19-57 3-46 (290)
150 cd02025 PanK Pantothenate kina 99.2 5.1E-11 1.1E-15 88.1 8.9 121 23-144 1-149 (220)
151 PHA03132 thymidine kinase; Pro 99.2 3E-10 6.6E-15 93.5 14.1 27 21-47 257-283 (580)
152 PRK07429 phosphoribulokinase; 99.2 2E-10 4.4E-15 89.4 12.3 139 18-162 5-163 (327)
153 COG4639 Predicted kinase [Gene 99.2 5.3E-10 1.2E-14 76.0 12.6 114 21-144 2-117 (168)
154 PRK09270 nucleoside triphospha 99.2 1.1E-10 2.5E-15 87.1 10.4 133 18-161 30-197 (229)
155 KOG4235 Mitochondrial thymidin 99.2 1E-09 2.2E-14 77.2 14.2 69 121-190 151-221 (244)
156 cd02028 UMPK_like Uridine mono 99.2 2.7E-11 5.9E-16 86.8 6.2 37 23-59 1-42 (179)
157 TIGR03575 selen_PSTK_euk L-ser 99.2 2.3E-10 5E-15 89.1 11.7 120 23-144 1-175 (340)
158 COG1660 Predicted P-loop-conta 99.2 2.2E-09 4.7E-14 79.0 15.3 149 22-204 2-159 (286)
159 PRK05439 pantothenate kinase; 99.2 9.3E-11 2E-15 90.2 8.3 127 17-144 82-237 (311)
160 PF01591 6PF2K: 6-phosphofruct 99.2 2.2E-10 4.7E-15 84.1 9.7 153 18-171 9-179 (222)
161 TIGR00554 panK_bact pantothena 99.1 1.1E-09 2.3E-14 83.8 10.7 126 18-144 59-217 (290)
162 cd02026 PRK Phosphoribulokinas 99.1 1.5E-09 3.2E-14 82.8 10.1 133 23-161 1-153 (273)
163 cd02019 NK Nucleoside/nucleoti 99.1 6.8E-10 1.5E-14 66.7 6.5 60 23-132 1-63 (69)
164 PLN02318 phosphoribulokinase/u 99.1 1.5E-09 3.4E-14 89.2 10.1 146 19-177 63-227 (656)
165 COG4185 Uncharacterized protei 99.1 3.3E-09 7.2E-14 72.4 10.1 150 21-186 2-157 (187)
166 cd02029 PRK_like Phosphoribulo 99.0 2.6E-09 5.7E-14 79.9 9.9 35 23-57 1-40 (277)
167 PHA00729 NTP-binding motif con 99.0 1.2E-08 2.5E-13 75.0 10.8 113 18-144 14-139 (226)
168 PHA03136 thymidine kinase; Pro 99.0 7.3E-08 1.6E-12 75.4 15.4 29 120-150 188-216 (378)
169 KOG3062 RNA polymerase II elon 98.9 5.4E-09 1.2E-13 75.3 5.8 161 22-197 2-175 (281)
170 PLN02165 adenylate isopentenyl 98.9 1.9E-08 4.2E-13 77.9 9.0 37 19-55 41-77 (334)
171 KOG0635 Adenosine 5'-phosphosu 98.9 1.9E-08 4E-13 68.1 7.7 171 13-203 23-201 (207)
172 COG1072 CoaA Panthothenate kin 98.8 9.6E-09 2.1E-13 76.5 5.7 126 17-144 78-231 (283)
173 PF08303 tRNA_lig_kinase: tRNA 98.7 7.4E-07 1.6E-11 61.7 12.4 73 24-118 2-75 (168)
174 PF13189 Cytidylate_kin2: Cyti 98.7 1.3E-07 2.8E-12 67.9 8.9 114 23-144 1-134 (179)
175 PF13521 AAA_28: AAA domain; P 98.7 5.2E-08 1.1E-12 68.9 5.5 37 23-62 1-37 (163)
176 PRK06761 hypothetical protein; 98.6 2.7E-06 5.9E-11 64.9 13.8 28 21-48 3-30 (282)
177 PHA03135 thymidine kinase; Pro 98.6 2.4E-06 5.2E-11 66.1 13.3 27 19-45 8-34 (343)
178 cd00071 GMPK Guanosine monopho 98.6 2E-07 4.3E-12 63.9 6.6 24 23-46 1-24 (137)
179 PTZ00322 6-phosphofructo-2-kin 98.5 9.3E-07 2E-11 75.8 11.1 31 20-50 214-244 (664)
180 PHA03134 thymidine kinase; Pro 98.5 2.1E-05 4.5E-10 61.0 16.8 133 18-152 10-190 (340)
181 PRK00091 miaA tRNA delta(2)-is 98.5 1.2E-07 2.7E-12 73.3 4.1 37 19-55 2-38 (307)
182 PHA03138 thymidine kinase; Pro 98.5 2.9E-06 6.4E-11 65.7 11.3 26 20-45 11-36 (340)
183 PF00004 AAA: ATPase family as 98.4 2.9E-07 6.3E-12 62.5 4.3 28 24-51 1-28 (132)
184 PRK12724 flagellar biosynthesi 98.4 6.9E-06 1.5E-10 65.8 12.4 108 20-134 222-344 (432)
185 PLN02840 tRNA dimethylallyltra 98.4 2.8E-07 6.1E-12 73.7 4.5 38 17-54 17-54 (421)
186 COG3896 Chloramphenicol 3-O-ph 98.4 2.6E-05 5.6E-10 53.6 13.3 171 17-201 19-204 (205)
187 PF13173 AAA_14: AAA domain 98.4 4.2E-06 9E-11 56.7 9.3 99 21-140 2-104 (128)
188 PF01745 IPT: Isopentenyl tran 98.4 5.7E-06 1.2E-10 59.8 10.1 120 22-144 2-138 (233)
189 KOG0733 Nuclear AAA ATPase (VC 98.4 1.5E-06 3.2E-11 71.6 7.7 39 14-52 216-254 (802)
190 PRK08099 bifunctional DNA-bind 98.4 5.3E-06 1.1E-10 66.8 10.9 37 15-51 213-249 (399)
191 COG1618 Predicted nucleotide k 98.4 4.3E-07 9.3E-12 62.5 3.9 28 19-46 3-30 (179)
192 TIGR03707 PPK2_P_aer polyphosp 98.3 9.5E-05 2.1E-09 54.8 15.7 145 19-187 29-205 (230)
193 KOG0707 Guanylate kinase [Nucl 98.3 2.2E-05 4.8E-10 57.3 11.4 170 20-205 36-224 (231)
194 KOG0730 AAA+-type ATPase [Post 98.3 3.4E-05 7.5E-10 64.2 13.6 129 13-144 460-613 (693)
195 PLN02748 tRNA dimethylallyltra 98.3 8.2E-07 1.8E-11 72.2 4.2 37 18-54 19-55 (468)
196 TIGR00174 miaA tRNA isopenteny 98.3 7.3E-07 1.6E-11 68.2 3.4 33 23-55 1-33 (287)
197 PF01712 dNK: Deoxynucleoside 98.2 2.8E-06 6.1E-11 58.9 5.6 77 120-202 63-144 (146)
198 PRK09087 hypothetical protein; 98.2 8.4E-06 1.8E-10 60.7 8.4 39 21-59 44-82 (226)
199 PHA02575 1 deoxynucleoside mon 98.2 2.3E-06 5E-11 62.6 5.0 40 22-62 1-41 (227)
200 PF13401 AAA_22: AAA domain; P 98.2 5.3E-06 1.2E-10 56.2 6.4 109 20-134 3-125 (131)
201 PF05729 NACHT: NACHT domain 98.2 1E-05 2.3E-10 56.9 8.1 23 23-45 2-24 (166)
202 PRK14974 cell division protein 98.2 6.2E-06 1.3E-10 64.7 7.4 27 19-45 138-164 (336)
203 PRK05800 cobU adenosylcobinami 98.2 1.2E-06 2.6E-11 62.2 2.8 31 22-52 2-34 (170)
204 smart00763 AAA_PrkA PrkA AAA d 98.2 1.8E-06 4E-11 67.7 4.0 29 19-47 76-104 (361)
205 smart00382 AAA ATPases associa 98.2 1.7E-06 3.6E-11 59.0 3.4 28 21-48 2-29 (148)
206 TIGR01425 SRP54_euk signal rec 98.2 1.2E-05 2.6E-10 64.9 8.4 39 18-57 97-140 (429)
207 TIGR03708 poly_P_AMP_trns poly 98.2 0.0002 4.4E-09 58.9 15.5 146 18-187 37-214 (493)
208 KOG4622 Predicted nucleotide k 98.2 3.4E-05 7.4E-10 54.9 9.6 34 23-56 3-42 (291)
209 PHA03133 thymidine kinase; Pro 98.2 0.00023 5E-09 55.7 14.9 27 20-46 39-65 (368)
210 KOG0744 AAA+-type ATPase [Post 98.2 1.7E-06 3.7E-11 66.1 3.3 26 21-46 177-202 (423)
211 COG0324 MiaA tRNA delta(2)-iso 98.1 2.7E-06 5.9E-11 65.3 4.3 36 20-55 2-37 (308)
212 PLN02796 D-glycerate 3-kinase 98.1 2E-06 4.4E-11 67.1 3.6 38 19-56 98-140 (347)
213 TIGR03709 PPK2_rel_1 polyphosp 98.1 0.00031 6.7E-09 53.2 15.0 144 20-187 55-230 (264)
214 TIGR00150 HI0065_YjeE ATPase, 98.1 3.6E-06 7.8E-11 56.9 4.0 28 20-47 21-48 (133)
215 TIGR00959 ffh signal recogniti 98.1 5.9E-05 1.3E-09 61.2 11.5 40 18-58 96-141 (428)
216 PRK14729 miaA tRNA delta(2)-is 98.1 4E-06 8.6E-11 64.6 4.6 36 19-55 2-37 (300)
217 PF07728 AAA_5: AAA domain (dy 98.1 3.9E-06 8.4E-11 57.6 4.1 27 24-50 2-28 (139)
218 PF05496 RuvB_N: Holliday junc 98.1 3.6E-06 7.8E-11 61.6 4.0 29 21-49 50-78 (233)
219 PRK00771 signal recognition pa 98.1 2.5E-05 5.3E-10 63.5 9.2 27 19-45 93-119 (437)
220 KOG0780 Signal recognition par 98.1 1.2E-05 2.6E-10 63.0 7.0 125 8-139 89-230 (483)
221 PLN03046 D-glycerate 3-kinase; 98.1 3.2E-06 7E-11 67.4 3.7 38 19-56 210-252 (460)
222 CHL00181 cbbX CbbX; Provisiona 98.1 2.8E-05 6.1E-10 60.0 8.8 26 20-45 58-83 (287)
223 TIGR00390 hslU ATP-dependent p 98.1 3.7E-06 8.1E-11 67.1 4.0 34 20-53 46-79 (441)
224 PRK10867 signal recognition pa 98.1 5E-05 1.1E-09 61.7 10.5 40 18-58 97-142 (433)
225 TIGR01223 Pmev_kin_anim phosph 98.1 0.00019 4E-09 50.6 11.9 117 23-144 1-135 (182)
226 COG4240 Predicted kinase [Gene 98.1 6.2E-06 1.3E-10 60.1 4.5 47 12-58 41-93 (300)
227 COG3911 Predicted ATPase [Gene 98.0 6.5E-05 1.4E-09 51.1 8.4 30 19-49 7-36 (183)
228 PRK05201 hslU ATP-dependent pr 98.0 5.2E-06 1.1E-10 66.4 3.7 34 20-53 49-82 (443)
229 PRK12723 flagellar biosynthesi 98.0 5.4E-05 1.2E-09 60.6 9.4 27 19-45 172-198 (388)
230 PF03976 PPK2: Polyphosphate k 98.0 0.00012 2.6E-09 54.4 10.5 144 20-187 30-205 (228)
231 CHL00195 ycf46 Ycf46; Provisio 98.0 0.00017 3.7E-09 59.6 12.5 33 19-51 257-289 (489)
232 COG0552 FtsY Signal recognitio 98.0 3.5E-05 7.6E-10 59.4 7.8 88 18-106 136-230 (340)
233 KOG2702 Predicted panthothenat 98.0 5E-05 1.1E-09 55.6 8.0 45 98-144 235-279 (323)
234 PRK11889 flhF flagellar biosyn 98.0 0.00015 3.3E-09 57.8 11.3 27 19-45 239-265 (436)
235 PF03266 NTPase_1: NTPase; In 98.0 7.4E-06 1.6E-10 58.1 3.6 22 24-45 2-23 (168)
236 PRK06620 hypothetical protein; 98.0 0.0002 4.3E-09 52.9 11.3 30 22-51 45-74 (214)
237 COG0541 Ffh Signal recognition 98.0 5.4E-05 1.2E-09 60.4 8.5 118 16-135 95-225 (451)
238 COG1126 GlnQ ABC-type polar am 98.0 6.5E-06 1.4E-10 59.6 3.2 29 16-45 23-51 (240)
239 COG4619 ABC-type uncharacteriz 98.0 7.1E-06 1.5E-10 57.1 3.1 31 15-45 23-53 (223)
240 PF03308 ArgK: ArgK protein; 98.0 9.4E-06 2E-10 60.6 3.9 27 19-45 27-53 (266)
241 KOG0738 AAA+-type ATPase [Post 98.0 0.00039 8.5E-09 54.8 12.8 33 20-52 243-276 (491)
242 PRK10751 molybdopterin-guanine 97.9 1.2E-05 2.5E-10 57.0 4.1 28 19-46 4-31 (173)
243 TIGR02881 spore_V_K stage V sp 97.9 9.9E-06 2.2E-10 61.8 4.1 27 19-45 40-66 (261)
244 PF06745 KaiC: KaiC; InterPro 97.9 4.4E-05 9.4E-10 56.9 7.4 33 20-52 18-56 (226)
245 PF00448 SRP54: SRP54-type pro 97.9 1E-05 2.2E-10 58.8 3.9 26 21-46 1-26 (196)
246 PRK09169 hypothetical protein; 97.9 0.00024 5.3E-09 66.6 13.2 109 21-144 2110-2220(2316)
247 KOG4238 Bifunctional ATP sulfu 97.9 1.6E-05 3.6E-10 61.6 5.0 111 21-144 50-170 (627)
248 PF02367 UPF0079: Uncharacteri 97.9 1.3E-05 2.8E-10 53.4 3.9 29 19-47 13-41 (123)
249 KOG1384 tRNA delta(2)-isopente 97.9 5.2E-05 1.1E-09 58.2 7.5 36 20-55 6-41 (348)
250 TIGR03877 thermo_KaiC_1 KaiC d 97.9 4.2E-05 9.1E-10 57.5 7.0 25 20-44 20-44 (237)
251 PRK14956 DNA polymerase III su 97.9 0.00014 3E-09 59.6 10.2 28 21-48 40-67 (484)
252 TIGR01650 PD_CobS cobaltochela 97.9 1.2E-05 2.5E-10 62.6 3.9 30 22-51 65-94 (327)
253 PF13245 AAA_19: Part of AAA d 97.9 1.7E-05 3.6E-10 48.4 3.7 25 21-45 10-35 (76)
254 PF07726 AAA_3: ATPase family 97.9 7.4E-06 1.6E-10 54.6 2.2 27 24-50 2-28 (131)
255 cd00009 AAA The AAA+ (ATPases 97.9 1.8E-05 4E-10 54.2 4.4 26 20-45 18-43 (151)
256 PF03215 Rad17: Rad17 cell cyc 97.9 1.7E-05 3.6E-10 65.9 4.7 31 20-50 44-74 (519)
257 PF00910 RNA_helicase: RNA hel 97.9 1E-05 2.2E-10 52.9 2.9 23 24-46 1-23 (107)
258 PRK04328 hypothetical protein; 97.9 5.1E-05 1.1E-09 57.5 6.9 25 20-44 22-46 (249)
259 COG1222 RPT1 ATP-dependent 26S 97.9 5.2E-05 1.1E-09 59.0 6.9 47 6-52 168-216 (406)
260 PRK09435 membrane ATPase/prote 97.9 1.6E-05 3.4E-10 62.3 4.2 28 18-45 53-80 (332)
261 COG1855 ATPase (PilT family) [ 97.9 1.1E-05 2.3E-10 64.5 3.3 26 21-46 263-288 (604)
262 COG1703 ArgK Putative periplas 97.9 1.3E-05 2.9E-10 60.7 3.6 28 18-45 48-75 (323)
263 COG1116 TauB ABC-type nitrate/ 97.8 1.4E-05 3E-10 59.2 3.2 31 15-45 23-53 (248)
264 TIGR02640 gas_vesic_GvpN gas v 97.8 1.8E-05 3.8E-10 60.4 3.9 29 22-50 22-50 (262)
265 PRK06067 flagellar accessory p 97.8 6.2E-05 1.3E-09 56.5 6.8 33 20-52 24-61 (234)
266 PF06309 Torsin: Torsin; Inte 97.8 2.8E-05 6.1E-10 51.7 4.2 31 15-45 47-77 (127)
267 TIGR02880 cbbX_cfxQ probable R 97.8 9.1E-05 2E-09 57.2 7.6 24 22-45 59-82 (284)
268 PRK03992 proteasome-activating 97.8 2.2E-05 4.7E-10 63.3 4.3 38 19-56 163-202 (389)
269 COG1136 SalX ABC-type antimicr 97.8 1.6E-05 3.4E-10 58.6 3.1 31 14-44 24-54 (226)
270 TIGR00101 ureG urease accessor 97.8 2.3E-05 5E-10 57.2 3.9 26 21-46 1-26 (199)
271 PF10662 PduV-EutP: Ethanolami 97.8 1.8E-05 3.8E-10 54.1 3.0 24 22-45 2-25 (143)
272 cd00820 PEPCK_HprK Phosphoenol 97.8 2E-05 4.2E-10 51.2 3.0 24 19-42 13-36 (107)
273 KOG0743 AAA+-type ATPase [Post 97.8 2.8E-05 6E-10 62.2 4.5 29 24-52 238-266 (457)
274 PF13555 AAA_29: P-loop contai 97.8 2.6E-05 5.6E-10 45.2 3.2 24 22-45 24-47 (62)
275 TIGR01526 nadR_NMN_Atrans nico 97.8 2.5E-05 5.5E-10 61.3 4.2 31 21-51 162-192 (325)
276 cd01131 PilT Pilus retraction 97.8 2.1E-05 4.6E-10 57.4 3.6 24 23-46 3-26 (198)
277 PLN00020 ribulose bisphosphate 97.8 1.2E-05 2.6E-10 63.2 2.3 39 18-56 145-185 (413)
278 cd01124 KaiC KaiC is a circadi 97.8 2E-05 4.4E-10 56.8 3.4 30 23-52 1-35 (187)
279 TIGR01241 FtsH_fam ATP-depende 97.8 0.00014 2.9E-09 60.7 8.6 34 19-52 86-119 (495)
280 PF03029 ATP_bind_1: Conserved 97.8 1.5E-05 3.3E-10 59.8 2.7 21 26-46 1-21 (238)
281 PRK05342 clpX ATP-dependent pr 97.8 2.1E-05 4.6E-10 63.5 3.6 31 22-52 109-139 (412)
282 TIGR00635 ruvB Holliday juncti 97.8 3.4E-05 7.3E-10 60.2 4.6 30 19-48 28-57 (305)
283 PTZ00454 26S protease regulato 97.8 3.1E-05 6.8E-10 62.4 4.4 33 19-51 177-209 (398)
284 PF13191 AAA_16: AAA ATPase do 97.8 2.5E-05 5.3E-10 56.2 3.5 30 17-46 20-49 (185)
285 TIGR02012 tigrfam_recA protein 97.8 0.00018 3.8E-09 56.2 8.3 83 20-105 54-141 (321)
286 PRK11784 tRNA 2-selenouridine 97.8 0.00014 2.9E-09 57.5 7.8 112 21-144 141-256 (345)
287 TIGR01242 26Sp45 26S proteasom 97.8 3.2E-05 6.9E-10 61.9 4.4 33 19-51 154-186 (364)
288 TIGR00362 DnaA chromosomal rep 97.8 0.0019 4.2E-08 52.5 14.7 39 21-59 136-181 (405)
289 COG2256 MGS1 ATPase related to 97.8 2.3E-05 5.1E-10 61.7 3.4 33 19-51 46-78 (436)
290 PRK12377 putative replication 97.8 0.0016 3.4E-08 49.2 13.1 39 21-59 101-144 (248)
291 PRK12323 DNA polymerase III su 97.8 0.0015 3.2E-08 55.5 13.9 27 21-47 38-64 (700)
292 PRK14957 DNA polymerase III su 97.8 0.0015 3.2E-08 54.8 14.0 27 21-47 38-64 (546)
293 COG0466 Lon ATP-dependent Lon 97.7 3.2E-05 6.9E-10 65.1 4.1 33 19-51 348-380 (782)
294 cd00983 recA RecA is a bacter 97.7 0.00024 5.2E-09 55.5 8.7 81 20-105 54-141 (325)
295 TIGR01618 phage_P_loop phage n 97.7 3.6E-05 7.9E-10 56.7 4.0 33 20-54 11-43 (220)
296 PRK00080 ruvB Holliday junctio 97.7 3.7E-05 8E-10 60.6 4.4 30 20-49 50-79 (328)
297 PF03205 MobB: Molybdopterin g 97.7 3.4E-05 7.4E-10 53.0 3.6 24 22-45 1-24 (140)
298 KOG0731 AAA+-type ATPase conta 97.7 0.00011 2.3E-09 62.9 7.1 129 14-143 337-492 (774)
299 TIGR02655 circ_KaiC circadian 97.7 5E-05 1.1E-09 63.0 5.2 86 20-105 262-361 (484)
300 COG0378 HypB Ni2+-binding GTPa 97.7 3.7E-05 8E-10 54.8 3.8 33 20-52 11-48 (202)
301 TIGR00382 clpX endopeptidase C 97.7 3E-05 6.5E-10 62.5 3.6 30 22-51 117-146 (413)
302 PRK14964 DNA polymerase III su 97.7 0.0017 3.6E-08 53.8 13.7 27 21-47 35-61 (491)
303 PRK10416 signal recognition pa 97.7 4.2E-05 9.1E-10 59.8 4.3 28 18-45 111-138 (318)
304 PRK04195 replication factor C 97.7 3.5E-05 7.6E-10 63.9 4.0 31 21-51 39-69 (482)
305 PRK14949 DNA polymerase III su 97.7 0.0011 2.4E-08 58.1 13.0 28 21-48 38-65 (944)
306 COG1120 FepC ABC-type cobalami 97.7 3E-05 6.5E-10 58.3 3.1 31 16-46 23-53 (258)
307 TIGR03420 DnaA_homol_Hda DnaA 97.7 6E-05 1.3E-09 56.1 4.8 39 18-56 35-78 (226)
308 TIGR00064 ftsY signal recognit 97.7 4.8E-05 1E-09 58.2 4.3 28 18-45 69-96 (272)
309 PRK12726 flagellar biosynthesi 97.7 0.00091 2E-08 53.2 11.4 28 18-45 203-230 (407)
310 PTZ00361 26 proteosome regulat 97.7 5E-05 1.1E-09 61.8 4.5 33 19-51 215-247 (438)
311 TIGR03878 thermo_KaiC_2 KaiC d 97.7 0.00019 4.1E-09 54.7 7.5 33 20-52 35-72 (259)
312 cd03115 SRP The signal recogni 97.7 4.1E-05 8.9E-10 54.6 3.6 31 23-53 2-37 (173)
313 PRK14955 DNA polymerase III su 97.7 0.0019 4.2E-08 52.3 13.4 28 21-48 38-65 (397)
314 PRK10646 ADP-binding protein; 97.7 5.8E-05 1.3E-09 52.3 4.0 27 21-47 28-54 (153)
315 COG0802 Predicted ATPase or ki 97.7 5.5E-05 1.2E-09 51.8 3.8 29 19-47 23-51 (149)
316 KOG0739 AAA+-type ATPase [Post 97.7 0.00036 7.8E-09 53.3 8.4 41 20-60 164-207 (439)
317 PRK13695 putative NTPase; Prov 97.7 4.5E-05 9.8E-10 54.5 3.6 24 22-45 1-24 (174)
318 TIGR00073 hypB hydrogenase acc 97.7 4.5E-05 9.9E-10 56.1 3.7 31 16-46 17-47 (207)
319 KOG2004 Mitochondrial ATP-depe 97.7 4.2E-05 9E-10 64.4 3.8 38 19-56 436-475 (906)
320 KOG0734 AAA+-type ATPase conta 97.7 0.0004 8.6E-09 57.0 9.1 45 5-51 323-367 (752)
321 PRK14088 dnaA chromosomal repl 97.7 0.0012 2.6E-08 54.2 12.2 40 21-60 130-176 (440)
322 KOG1969 DNA replication checkp 97.7 5.1E-05 1.1E-09 64.0 4.2 34 18-51 323-356 (877)
323 COG2884 FtsE Predicted ATPase 97.7 4.4E-05 9.4E-10 54.3 3.3 32 14-45 21-52 (223)
324 KOG1533 Predicted GTPase [Gene 97.7 0.00015 3.3E-09 53.2 6.1 25 21-45 2-26 (290)
325 PRK08903 DnaA regulatory inact 97.7 0.0001 2.2E-09 55.0 5.5 36 21-56 42-82 (227)
326 TIGR03015 pepcterm_ATPase puta 97.7 4.6E-05 1E-09 58.3 3.8 26 21-46 43-68 (269)
327 COG1124 DppF ABC-type dipeptid 97.7 3.9E-05 8.4E-10 56.6 3.0 29 17-45 29-57 (252)
328 PF08477 Miro: Miro-like prote 97.7 5.2E-05 1.1E-09 50.4 3.4 23 23-45 1-23 (119)
329 COG0464 SpoVK ATPases of the A 97.7 0.00056 1.2E-08 57.1 10.2 34 19-52 274-307 (494)
330 PF07724 AAA_2: AAA domain (Cd 97.7 7E-05 1.5E-09 53.3 4.2 26 22-47 4-29 (171)
331 TIGR03708 poly_P_AMP_trns poly 97.6 0.005 1.1E-07 50.9 15.3 146 18-187 296-473 (493)
332 PHA02244 ATPase-like protein 97.6 5.9E-05 1.3E-09 59.5 4.1 34 21-54 119-152 (383)
333 COG1117 PstB ABC-type phosphat 97.6 5.9E-05 1.3E-09 54.7 3.7 28 18-46 30-57 (253)
334 COG0396 sufC Cysteine desulfur 97.6 5E-05 1.1E-09 55.6 3.3 37 15-51 24-60 (251)
335 TIGR02655 circ_KaiC circadian 97.6 0.00018 3.8E-09 59.8 7.0 24 20-43 20-43 (484)
336 PRK14960 DNA polymerase III su 97.6 0.0011 2.4E-08 56.3 11.6 28 21-48 37-64 (702)
337 PRK05896 DNA polymerase III su 97.6 0.0028 6E-08 53.6 13.9 27 21-47 38-64 (605)
338 PRK14951 DNA polymerase III su 97.6 0.0028 6.1E-08 53.9 14.1 28 20-47 37-64 (618)
339 PF00005 ABC_tran: ABC transpo 97.6 2.8E-05 6.2E-10 53.1 1.9 27 19-45 9-35 (137)
340 PRK14490 putative bifunctional 97.6 5.7E-05 1.2E-09 60.5 3.9 28 19-46 3-30 (369)
341 COG3839 MalK ABC-type sugar tr 97.6 4.3E-05 9.3E-10 59.7 3.1 31 15-45 23-53 (338)
342 TIGR03499 FlhF flagellar biosy 97.6 6.4E-05 1.4E-09 57.9 4.0 27 19-45 192-218 (282)
343 cd00544 CobU Adenosylcobinamid 97.6 6E-05 1.3E-09 53.5 3.5 24 23-46 1-24 (169)
344 PRK13342 recombination factor 97.6 7E-05 1.5E-09 61.0 4.3 34 18-51 33-66 (413)
345 PF00308 Bac_DnaA: Bacterial d 97.6 0.0014 3.1E-08 48.6 10.9 40 21-60 34-80 (219)
346 PRK08533 flagellar accessory p 97.6 0.00019 4E-09 53.7 6.3 26 20-45 23-48 (230)
347 PF00693 Herpes_TK: Thymidine 97.6 0.0047 1E-07 47.0 13.6 27 124-152 146-172 (281)
348 cd01130 VirB11-like_ATPase Typ 97.6 5.9E-05 1.3E-09 54.5 3.5 28 19-46 23-50 (186)
349 cd03238 ABC_UvrA The excision 97.6 4.8E-05 1E-09 54.4 3.0 28 15-42 15-42 (176)
350 KOG0234 Fructose-6-phosphate 2 97.6 0.0012 2.5E-08 53.0 10.9 155 16-171 23-196 (438)
351 TIGR00176 mobB molybdopterin-g 97.6 5.6E-05 1.2E-09 52.9 3.2 23 23-45 1-23 (155)
352 TIGR01166 cbiO cobalt transpor 97.6 5E-05 1.1E-09 55.1 3.1 30 16-45 13-42 (190)
353 PRK14958 DNA polymerase III su 97.6 0.0033 7.1E-08 52.6 14.0 28 21-48 38-65 (509)
354 PRK12422 chromosomal replicati 97.6 0.0092 2E-07 49.1 16.4 38 22-59 142-184 (445)
355 KOG2170 ATPase of the AAA+ sup 97.6 0.0038 8.1E-08 47.8 12.9 84 13-105 102-186 (344)
356 KOG1970 Checkpoint RAD17-RFC c 97.6 7.6E-05 1.6E-09 61.1 4.2 31 20-50 109-139 (634)
357 cd01120 RecA-like_NTPases RecA 97.6 5.5E-05 1.2E-09 53.0 3.1 23 23-45 1-23 (165)
358 PRK07003 DNA polymerase III su 97.6 0.0028 6E-08 54.8 13.5 28 21-48 38-65 (830)
359 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.6 5.3E-05 1.2E-09 56.1 3.1 30 16-45 25-54 (218)
360 PRK10463 hydrogenase nickel in 97.6 6.3E-05 1.4E-09 57.6 3.4 30 16-45 99-128 (290)
361 PRK09354 recA recombinase A; P 97.6 0.00046 9.9E-09 54.4 8.2 81 20-105 59-146 (349)
362 TIGR00960 3a0501s02 Type II (G 97.6 5.5E-05 1.2E-09 56.0 3.1 30 16-45 24-53 (216)
363 cd03116 MobB Molybdenum is an 97.6 8.6E-05 1.9E-09 52.1 3.8 25 22-46 2-26 (159)
364 TIGR00750 lao LAO/AO transport 97.6 8.9E-05 1.9E-09 57.7 4.3 27 19-45 32-58 (300)
365 cd03292 ABC_FtsE_transporter F 97.6 5.7E-05 1.2E-09 55.8 3.0 30 16-45 22-51 (214)
366 PRK08084 DNA replication initi 97.6 0.00011 2.5E-09 55.1 4.6 34 21-54 45-83 (235)
367 PRK13768 GTPase; Provisional 97.6 8.1E-05 1.7E-09 56.5 3.8 25 21-45 2-26 (253)
368 cd03225 ABC_cobalt_CbiO_domain 97.6 6E-05 1.3E-09 55.6 3.1 30 16-45 22-51 (211)
369 PRK07994 DNA polymerase III su 97.6 0.0022 4.9E-08 54.7 12.7 28 21-48 38-65 (647)
370 PRK11034 clpA ATP-dependent Cl 97.6 0.00016 3.4E-09 62.9 6.0 33 19-51 485-518 (758)
371 PRK15455 PrkA family serine pr 97.6 7E-05 1.5E-09 62.3 3.7 28 19-46 101-128 (644)
372 cd03269 ABC_putative_ATPase Th 97.6 6.2E-05 1.3E-09 55.4 3.1 31 15-45 20-50 (210)
373 COG3842 PotA ABC-type spermidi 97.6 6.4E-05 1.4E-09 59.1 3.3 31 15-45 25-55 (352)
374 PRK14086 dnaA chromosomal repl 97.6 0.0017 3.7E-08 54.8 11.8 38 23-60 316-360 (617)
375 cd03226 ABC_cobalt_CbiO_domain 97.6 6E-05 1.3E-09 55.3 3.0 30 16-45 21-50 (205)
376 cd03259 ABC_Carb_Solutes_like 97.6 6.6E-05 1.4E-09 55.4 3.2 31 15-45 20-50 (213)
377 cd03224 ABC_TM1139_LivF_branch 97.6 6.4E-05 1.4E-09 55.8 3.1 30 16-45 21-50 (222)
378 PRK06893 DNA replication initi 97.6 0.00013 2.8E-09 54.6 4.7 33 21-53 39-76 (229)
379 COG1419 FlhF Flagellar GTP-bin 97.6 0.00043 9.2E-09 55.1 7.7 37 20-57 202-245 (407)
380 PRK14962 DNA polymerase III su 97.6 8.4E-05 1.8E-09 61.2 4.0 27 21-47 36-62 (472)
381 TIGR02673 FtsE cell division A 97.6 6.8E-05 1.5E-09 55.4 3.1 30 16-45 23-52 (214)
382 KOG0991 Replication factor C, 97.5 0.0022 4.8E-08 47.4 10.6 26 20-45 47-72 (333)
383 cd03263 ABC_subfamily_A The AB 97.5 6.9E-05 1.5E-09 55.6 3.1 30 16-45 23-52 (220)
384 PRK14961 DNA polymerase III su 97.5 9.2E-05 2E-09 59.2 4.0 27 21-47 38-64 (363)
385 cd01918 HprK_C HprK/P, the bif 97.5 7.8E-05 1.7E-09 51.4 3.1 29 21-50 14-42 (149)
386 cd03262 ABC_HisP_GlnQ_permease 97.5 7.4E-05 1.6E-09 55.1 3.2 31 15-45 20-50 (213)
387 TIGR02211 LolD_lipo_ex lipopro 97.5 7E-05 1.5E-09 55.6 3.1 31 15-45 25-55 (221)
388 TIGR02639 ClpA ATP-dependent C 97.5 0.00022 4.7E-09 62.2 6.5 33 19-51 481-514 (731)
389 cd03261 ABC_Org_Solvent_Resist 97.5 6.8E-05 1.5E-09 56.2 3.1 30 16-45 21-50 (235)
390 TIGR02315 ABC_phnC phosphonate 97.5 7.2E-05 1.6E-09 56.4 3.2 31 15-45 22-52 (243)
391 cd03219 ABC_Mj1267_LivG_branch 97.5 6.8E-05 1.5E-09 56.3 3.0 30 16-45 21-50 (236)
392 PRK11629 lolD lipoprotein tran 97.5 7E-05 1.5E-09 56.1 3.1 31 15-45 29-59 (233)
393 COG1219 ClpX ATP-dependent pro 97.5 9.4E-05 2E-09 56.7 3.7 33 21-53 97-129 (408)
394 cd03229 ABC_Class3 This class 97.5 7.6E-05 1.6E-09 53.5 3.1 30 16-45 21-50 (178)
395 PRK15177 Vi polysaccharide exp 97.5 7.5E-05 1.6E-09 55.2 3.1 30 16-45 8-37 (213)
396 cd03264 ABC_drug_resistance_li 97.5 6.6E-05 1.4E-09 55.3 2.8 25 20-45 25-49 (211)
397 cd03256 ABC_PhnC_transporter A 97.5 7.5E-05 1.6E-09 56.2 3.2 31 15-45 21-51 (241)
398 PF06068 TIP49: TIP49 C-termin 97.5 8.4E-05 1.8E-09 58.4 3.4 35 21-55 50-88 (398)
399 cd03301 ABC_MalK_N The N-termi 97.5 7.5E-05 1.6E-09 55.1 3.1 30 16-45 21-50 (213)
400 TIGR03689 pup_AAA proteasome A 97.5 7.8E-05 1.7E-09 61.7 3.4 28 20-47 215-242 (512)
401 cd03235 ABC_Metallic_Cations A 97.5 7.1E-05 1.5E-09 55.3 2.9 30 16-45 20-49 (213)
402 COG2255 RuvB Holliday junction 97.5 8.5E-05 1.8E-09 56.1 3.3 27 21-47 52-78 (332)
403 cd03296 ABC_CysA_sulfate_impor 97.5 7.8E-05 1.7E-09 56.1 3.1 30 16-45 23-52 (239)
404 COG2805 PilT Tfp pilus assembl 97.5 0.0011 2.5E-08 50.6 9.2 119 16-144 120-245 (353)
405 cd04155 Arl3 Arl3 subfamily. 97.5 9.4E-05 2E-09 52.5 3.4 26 19-44 12-37 (173)
406 cd03258 ABC_MetN_methionine_tr 97.5 8.1E-05 1.8E-09 55.7 3.2 31 15-45 25-55 (233)
407 PRK07764 DNA polymerase III su 97.5 0.0028 6.1E-08 55.8 12.9 27 21-47 37-63 (824)
408 cd03293 ABC_NrtD_SsuB_transpor 97.5 7.3E-05 1.6E-09 55.5 2.8 30 16-45 25-54 (220)
409 TIGR02237 recomb_radB DNA repa 97.5 0.00013 2.8E-09 53.7 4.1 34 20-53 11-49 (209)
410 cd03222 ABC_RNaseL_inhibitor T 97.5 9.5E-05 2.1E-09 52.9 3.3 30 16-45 20-49 (177)
411 cd03230 ABC_DR_subfamily_A Thi 97.5 8.4E-05 1.8E-09 53.0 3.1 30 16-45 21-50 (173)
412 TIGR03608 L_ocin_972_ABC putat 97.5 7.9E-05 1.7E-09 54.7 3.0 30 16-45 19-48 (206)
413 cd01393 recA_like RecA is a b 97.5 0.00041 8.9E-09 51.6 6.9 25 20-44 18-42 (226)
414 PRK10247 putative ABC transpor 97.5 8.4E-05 1.8E-09 55.4 3.1 30 16-45 28-57 (225)
415 TIGR03881 KaiC_arch_4 KaiC dom 97.5 0.00035 7.7E-09 52.1 6.5 25 20-44 19-43 (229)
416 CHL00176 ftsH cell division pr 97.5 0.00011 2.5E-09 62.5 4.2 33 19-51 214-246 (638)
417 cd03260 ABC_PstB_phosphate_tra 97.5 8.4E-05 1.8E-09 55.4 3.1 30 16-45 21-50 (227)
418 cd03223 ABCD_peroxisomal_ALDP 97.5 9.3E-05 2E-09 52.4 3.1 30 16-45 22-51 (166)
419 PRK14954 DNA polymerase III su 97.5 0.0046 1E-07 52.8 13.7 28 21-48 38-65 (620)
420 cd03265 ABC_DrrA DrrA is the A 97.5 9.1E-05 2E-09 55.0 3.2 30 16-45 21-50 (220)
421 PRK14952 DNA polymerase III su 97.5 0.0034 7.4E-08 53.2 12.8 29 20-48 34-62 (584)
422 COG4778 PhnL ABC-type phosphon 97.5 9.5E-05 2.1E-09 51.8 3.0 31 15-45 31-61 (235)
423 cd01394 radB RadB. The archaea 97.5 0.00013 2.9E-09 54.0 4.1 26 20-45 18-43 (218)
424 TIGR03864 PQQ_ABC_ATP ABC tran 97.5 8.8E-05 1.9E-09 55.7 3.1 30 16-45 22-51 (236)
425 PRK13541 cytochrome c biogenes 97.5 8.8E-05 1.9E-09 54.0 3.1 30 16-45 21-50 (195)
426 PRK12402 replication factor C 97.5 0.00011 2.4E-09 58.1 3.9 28 19-46 34-61 (337)
427 cd03257 ABC_NikE_OppD_transpor 97.5 8.9E-05 1.9E-09 55.3 3.1 31 15-45 25-55 (228)
428 PRK04296 thymidine kinase; Pro 97.5 0.00012 2.6E-09 53.1 3.7 25 21-45 2-26 (190)
429 cd03232 ABC_PDR_domain2 The pl 97.5 8.1E-05 1.8E-09 54.1 2.8 28 16-43 28-55 (192)
430 TIGR01978 sufC FeS assembly AT 97.5 9.3E-05 2E-09 55.8 3.2 30 15-44 20-49 (243)
431 COG1127 Ttg2A ABC-type transpo 97.5 0.00095 2.1E-08 49.4 8.2 117 16-133 29-172 (263)
432 PRK07940 DNA polymerase III su 97.5 0.0034 7.3E-08 50.7 12.2 29 20-48 35-63 (394)
433 PHA02624 large T antigen; Prov 97.5 0.00016 3.6E-09 60.4 4.7 33 20-52 430-462 (647)
434 PF01926 MMR_HSR1: 50S ribosom 97.5 0.00011 2.4E-09 48.7 3.2 21 23-43 1-21 (116)
435 cd03218 ABC_YhbG The ABC trans 97.5 0.0001 2.2E-09 55.2 3.3 30 16-45 21-50 (232)
436 cd03247 ABCC_cytochrome_bd The 97.5 9.4E-05 2E-09 53.0 3.0 31 15-45 22-52 (178)
437 PRK11124 artP arginine transpo 97.5 9.9E-05 2.2E-09 55.6 3.2 30 16-45 23-52 (242)
438 PRK10584 putative ABC transpor 97.5 9.4E-05 2E-09 55.2 3.1 30 16-45 31-60 (228)
439 TIGR03410 urea_trans_UrtE urea 97.5 9.6E-05 2.1E-09 55.2 3.1 31 15-45 20-50 (230)
440 cd03283 ABC_MutS-like MutS-lik 97.5 0.00011 2.4E-09 53.7 3.3 29 15-43 19-47 (199)
441 PRK14722 flhF flagellar biosyn 97.5 0.00014 3.1E-09 57.8 4.2 27 19-45 135-161 (374)
442 PRK14250 phosphate ABC transpo 97.5 9.7E-05 2.1E-09 55.7 3.1 30 16-45 24-53 (241)
443 PRK11248 tauB taurine transpor 97.5 9.7E-05 2.1E-09 56.2 3.1 30 16-45 22-51 (255)
444 TIGR01184 ntrCD nitrate transp 97.5 9.9E-05 2.1E-09 55.2 3.1 29 17-45 7-35 (230)
445 PLN03025 replication factor C 97.5 0.00012 2.6E-09 57.5 3.7 26 20-45 33-58 (319)
446 cd03246 ABCC_Protease_Secretio 97.5 0.00011 2.3E-09 52.5 3.1 30 16-45 23-52 (173)
447 PRK14950 DNA polymerase III su 97.5 0.0047 1E-07 52.7 13.4 27 21-47 38-64 (585)
448 KOG0609 Calcium/calmodulin-dep 97.5 0.0052 1.1E-07 50.3 12.8 161 17-208 336-534 (542)
449 PRK00149 dnaA chromosomal repl 97.5 0.0024 5.2E-08 52.7 11.4 38 22-59 149-193 (450)
450 PRK08181 transposase; Validate 97.5 0.0042 9.2E-08 47.5 11.9 40 20-59 105-149 (269)
451 PRK14242 phosphate transporter 97.5 9.6E-05 2.1E-09 56.1 3.0 27 18-44 29-55 (253)
452 TIGR02770 nickel_nikD nickel i 97.5 0.0001 2.2E-09 55.1 3.1 29 17-45 8-36 (230)
453 PRK11264 putative amino-acid A 97.5 0.00011 2.3E-09 55.7 3.2 30 16-45 24-53 (250)
454 TIGR01189 ccmA heme ABC export 97.5 0.00011 2.4E-09 53.6 3.2 31 15-45 20-50 (198)
455 cd03268 ABC_BcrA_bacitracin_re 97.5 0.00011 2.3E-09 54.1 3.1 30 16-45 21-50 (208)
456 PRK14247 phosphate ABC transpo 97.5 0.00011 2.4E-09 55.7 3.2 30 16-45 24-53 (250)
457 cd03216 ABC_Carb_Monos_I This 97.5 0.00011 2.3E-09 52.0 3.0 30 16-45 21-50 (163)
458 PF04665 Pox_A32: Poxvirus A32 97.4 0.00014 3.1E-09 54.2 3.7 28 19-46 11-38 (241)
459 PRK10908 cell division protein 97.4 0.00012 2.5E-09 54.5 3.2 30 16-45 23-52 (222)
460 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.00011 2.4E-09 50.8 2.8 30 16-45 21-50 (144)
461 COG1763 MobB Molybdopterin-gua 97.4 0.00015 3.3E-09 50.7 3.5 27 20-46 1-27 (161)
462 PHA02544 44 clamp loader, smal 97.4 0.00018 3.8E-09 56.5 4.3 29 20-48 42-70 (316)
463 cd03215 ABC_Carb_Monos_II This 97.4 0.00011 2.4E-09 52.8 2.9 29 17-45 22-50 (182)
464 TIGR02323 CP_lyasePhnK phospho 97.4 0.00011 2.4E-09 55.7 3.1 31 15-45 23-53 (253)
465 PRK09183 transposase/IS protei 97.4 0.00032 6.9E-09 53.4 5.5 37 20-56 101-142 (259)
466 PRK10895 lipopolysaccharide AB 97.4 0.00012 2.5E-09 55.2 3.1 31 15-45 23-53 (241)
467 PF01695 IstB_IS21: IstB-like 97.4 0.00041 8.8E-09 49.7 5.7 40 20-59 46-90 (178)
468 cd03234 ABCG_White The White s 97.4 0.00012 2.6E-09 54.6 3.1 31 15-45 27-57 (226)
469 PRK13539 cytochrome c biogenes 97.4 0.00012 2.6E-09 53.9 3.1 30 16-45 23-52 (207)
470 cd03278 ABC_SMC_barmotin Barmo 97.4 0.00014 2.9E-09 53.1 3.3 26 19-45 21-46 (197)
471 PRK11247 ssuB aliphatic sulfon 97.4 0.00011 2.5E-09 55.8 3.1 30 16-45 33-62 (257)
472 COG1224 TIP49 DNA helicase TIP 97.4 9.3E-05 2E-09 57.6 2.5 37 21-57 65-105 (450)
473 TIGR03771 anch_rpt_ABC anchore 97.4 0.00015 3.3E-09 53.9 3.7 27 19-45 4-30 (223)
474 cd03297 ABC_ModC_molybdenum_tr 97.4 0.00012 2.5E-09 54.2 3.0 29 16-45 19-47 (214)
475 cd03250 ABCC_MRP_domain1 Domai 97.4 0.00012 2.7E-09 53.6 3.1 30 16-45 26-55 (204)
476 KOG2878 Predicted kinase [Gene 97.4 8.4E-05 1.8E-09 53.2 2.1 42 16-57 24-75 (282)
477 KOG1532 GTPase XAB1, interacts 97.4 0.00016 3.4E-09 54.4 3.5 43 17-59 15-62 (366)
478 cd04163 Era Era subfamily. Er 97.4 0.00014 3E-09 50.9 3.3 24 21-44 3-26 (168)
479 KOG0735 AAA+-type ATPase [Post 97.4 0.002 4.3E-08 54.8 10.3 47 6-52 684-732 (952)
480 cd03254 ABCC_Glucan_exporter_l 97.4 0.00012 2.6E-09 54.6 3.1 30 16-45 24-53 (229)
481 PRK09493 glnQ glutamine ABC tr 97.4 0.00012 2.7E-09 55.0 3.1 31 15-45 21-51 (240)
482 cd03228 ABCC_MRP_Like The MRP 97.4 0.00013 2.8E-09 52.0 3.1 30 16-45 23-52 (171)
483 cd03251 ABCC_MsbA MsbA is an e 97.4 0.00012 2.7E-09 54.8 3.1 31 15-45 22-52 (234)
484 cd03245 ABCC_bacteriocin_expor 97.4 0.00012 2.6E-09 54.3 3.0 30 16-45 25-54 (220)
485 cd03214 ABC_Iron-Siderophores_ 97.4 0.00013 2.8E-09 52.4 3.1 30 16-45 20-49 (180)
486 PRK13538 cytochrome c biogenes 97.4 0.00013 2.8E-09 53.5 3.1 31 15-45 21-51 (204)
487 COG1223 Predicted ATPase (AAA+ 97.4 0.0029 6.3E-08 47.6 10.0 33 20-52 150-182 (368)
488 cd03266 ABC_NatA_sodium_export 97.4 0.00013 2.7E-09 54.1 3.1 30 16-45 26-55 (218)
489 COG1121 ZnuC ABC-type Mn/Zn tr 97.4 0.00012 2.6E-09 54.9 2.9 28 16-43 25-52 (254)
490 COG1220 HslU ATP-dependent pro 97.4 0.00018 3.8E-09 55.8 3.8 32 20-51 49-80 (444)
491 PRK13540 cytochrome c biogenes 97.4 0.00013 2.9E-09 53.3 3.1 30 16-45 22-51 (200)
492 TIGR02524 dot_icm_DotB Dot/Icm 97.4 0.00015 3.3E-09 57.6 3.6 26 20-45 133-158 (358)
493 PRK13764 ATPase; Provisional 97.4 0.00015 3.2E-09 61.1 3.7 27 20-46 256-282 (602)
494 PRK10744 pstB phosphate transp 97.4 0.00013 2.8E-09 55.7 3.1 30 16-45 34-63 (260)
495 PF03193 DUF258: Protein of un 97.4 0.00016 3.6E-09 50.5 3.3 25 21-45 35-59 (161)
496 cd03233 ABC_PDR_domain1 The pl 97.4 0.00011 2.5E-09 53.8 2.7 30 16-45 28-57 (202)
497 TIGR03005 ectoine_ehuA ectoine 97.4 0.00013 2.8E-09 55.3 3.1 31 15-45 20-50 (252)
498 cd03295 ABC_OpuCA_Osmoprotecti 97.4 0.00013 2.9E-09 55.0 3.1 31 15-45 21-51 (242)
499 TIGR01243 CDC48 AAA family ATP 97.4 0.00019 4.2E-09 62.6 4.5 33 19-51 210-242 (733)
500 PRK14274 phosphate ABC transpo 97.4 0.00013 2.7E-09 55.7 3.0 30 16-45 33-62 (259)
No 1
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.6e-35 Score=200.82 Aligned_cols=185 Identities=55% Similarity=1.006 Sum_probs=172.8
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc-CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (215)
.+.++++|++.|+|||||-|.|.+++++++|.|++.||++|+...+ +++.+..+.+++.+|..+|.+...++++.++.+
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~ 83 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS 83 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999999999999 999999999999999999999999999999988
Q ss_pred cCC-CeEEEeCCCCCHHHHHHHHHhcCC-CCcEEEEEecCHHHHHHHHhhccCC--CCCCcHHHHHHHHHHHhhcchhHH
Q 028025 96 SGN-DKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQG--REDDNVETIRKRFKVFLESSLPVV 171 (215)
Q Consensus 96 ~~~-~~~iidg~~~~~~~~~~~~~~~~~-~~~~~i~L~~~~e~~~~R~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 171 (215)
... .++++||||++.++...|.. ... .+++++|++|+.|++.+|+..|.++ |.+++.+.+.+|++.|.....|++
T Consensus 84 ~~~~~~fLIDGyPR~~~q~~~fe~-~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi 162 (195)
T KOG3079|consen 84 SGDSNGFLIDGYPRNVDQLVEFER-KIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVI 162 (195)
T ss_pred cCCCCeEEecCCCCChHHHHHHHH-HhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHH
Confidence 774 45999999999999999998 555 7999999999999999999999333 899999999999999999999999
Q ss_pred HHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 172 ~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
++|+..+.+..+|++.+++++++.+.+.+..
T Consensus 163 ~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 163 EYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999999988764
No 2
>PLN02674 adenylate kinase
Probab=100.00 E-value=3.1e-33 Score=206.62 Aligned_cols=183 Identities=30% Similarity=0.574 Sum_probs=167.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
...++.|+|.|+|||||||+|+.|++++|+.+++.|+++|..+..+++.+..+...+..|..+|++....++.+++....
T Consensus 28 ~~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~ 107 (244)
T PLN02674 28 SKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 107 (244)
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcC
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999997765
Q ss_pred -CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc----cC-----------------------
Q 028025 98 -NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQ----------------------- 146 (215)
Q Consensus 98 -~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r----~~----------------------- 146 (215)
..++|+||||++..+...|... .+..++.+|+|++|.+++.+|+..| ..
T Consensus 108 ~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~ 187 (244)
T PLN02674 108 CQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 187 (244)
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCc
Confidence 6899999999999999988763 3568999999999999999999988 11
Q ss_pred --CCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhh
Q 028025 147 --GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 147 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l 200 (215)
.|.++..+.+.+|+..|.+...++.++|...+.++.+|++.+++++++.|...+
T Consensus 188 L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 188 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred cccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 267888999999999999999999999999888999999999999999998876
No 3
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=7.1e-32 Score=194.40 Aligned_cols=178 Identities=30% Similarity=0.612 Sum_probs=161.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCe
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (215)
++.|+|+|+|||||||+++.|++.+|+.+++.+++++..+..+++.+.....++..|...+++....++...+....+.+
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g 81 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGG 81 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCc
Confidence 45799999999999999999999999999999999999988888888888888999999999999999988887645778
Q ss_pred EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK 177 (215)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (215)
+|+||||.+..+...|... ....++.+|+|++|++++.+|+..| ++.++..+.+.+|+..|+....++.++|...
T Consensus 82 ~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R--~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~ 159 (183)
T PRK14531 82 WLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLAR--GRADDNEAVIRNRLEVYREKTAPLIDHYRQR 159 (183)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999988877653 3456788999999999999999998 8888889999999999999999999999988
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhh
Q 028025 178 GKVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 178 ~~~~~id~~~~~~e~~~~i~~~l 200 (215)
+.+..+|++.+++++++.|.+.|
T Consensus 160 ~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 160 GLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh
Confidence 88999999999999999998876
No 4
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=9.5e-32 Score=199.44 Aligned_cols=191 Identities=30% Similarity=0.586 Sum_probs=172.4
Q ss_pred ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028025 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (215)
Q Consensus 13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (215)
..++..++++.|+|.|+|||||||+|+.|++.+|+.+++.++++|..+..+++.+..+..++..|..+|++++..++..+
T Consensus 21 ~~~~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~ 100 (261)
T PLN02459 21 DRSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKR 100 (261)
T ss_pred cCCccccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHH
Confidence 45555567788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcc---CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc----cC-------------------
Q 028025 93 MEES---GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----NQ------------------- 146 (215)
Q Consensus 93 ~~~~---~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r----~~------------------- 146 (215)
+.+. ...++|+||||++..+...|.. . ..++.+|+|+++.+++.+|+..| ..
T Consensus 101 l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~-~-~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~ 178 (261)
T PLN02459 101 LEAGEEEGESGFILDGFPRTVRQAEILEG-V-TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPG 178 (261)
T ss_pred HhcccccCCceEEEeCCCCCHHHHHHHHh-c-CCCCEEEEEECCHHHHHHHhhccccccccCcccccccccccccccccc
Confidence 8764 2689999999999999999986 3 46899999999999999999987 10
Q ss_pred -----------------CCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025 147 -----------------GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 147 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
+|.++..+.+.+|+..|.+...++.++|...+.++.+|++++++++++.|...|.....
T Consensus 179 ~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~~ 254 (261)
T PLN02459 179 IVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDDE 254 (261)
T ss_pred ccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhhh
Confidence 46778899999999999999999999999999999999999999999999999875433
No 5
>PLN02200 adenylate kinase family protein
Probab=100.00 E-value=1.4e-31 Score=198.80 Aligned_cols=190 Identities=63% Similarity=1.036 Sum_probs=168.2
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (215)
.+.+..|++|+|.|+|||||||+|+.|++++|+.+++.++++++.+....+.+..+...+..|...+++....++...+.
T Consensus 37 ~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~ 116 (234)
T PLN02200 37 SSKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEME 116 (234)
T ss_pred CccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Confidence 34455688999999999999999999999999999999999999988888888888888899999999988888888887
Q ss_pred ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHH
Q 028025 95 ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY 174 (215)
Q Consensus 95 ~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (215)
...+.++|+||||.+..++..+.+.....||.+|+|+++++++.+|+.+|..++.++..+.+.+|+..|.....++.++|
T Consensus 117 ~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y 196 (234)
T PLN02200 117 SSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYY 196 (234)
T ss_pred cCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 65567899999999998888887634457999999999999999999988556677888999999999999999999999
Q ss_pred HhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025 175 EAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (215)
Q Consensus 175 ~~~~~~~~id~~~~~~e~~~~i~~~l~~~~ 204 (215)
...+.++.||++.+++++++.|.+.+....
T Consensus 197 ~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~ 226 (234)
T PLN02200 197 SKKGKLYTINAVGTVDEIFEQVRPIFAACE 226 (234)
T ss_pred HhcCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 888889999999999999999999987654
No 6
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=1.3e-31 Score=205.24 Aligned_cols=184 Identities=29% Similarity=0.581 Sum_probs=165.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 100 (215)
+.|+|.|||||||||+++.|++.||+.+++.||+++..+..+++.+..+..++..|..+|++++..++.+.+.... ..+
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence 4689999999999999999999999999999999999998999999999999999999999999999999887654 679
Q ss_pred EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc-c-------CCCCCCcHHHHHHHHHHHhhcchh
Q 028025 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR-N-------QGREDDNVETIRKRFKVFLESSLP 169 (215)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r-~-------~~~~~~~~~~~~~~~~~~~~~~~~ 169 (215)
||+||||++.++...|..+ ....||++|+|++|++++.+|+..| . ..+.++..+.+.+|+..|+....+
T Consensus 81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~P 160 (333)
T PRK13808 81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEP 160 (333)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHH
Confidence 9999999999999887653 4568999999999999999999987 1 146778899999999999999999
Q ss_pred HHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025 170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 170 ~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
+.++|.+.+.++.||++.++++++++|...|.....
T Consensus 161 Ll~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~ 196 (333)
T PRK13808 161 LVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA 196 (333)
T ss_pred HHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence 999999888899999999999999999999875543
No 7
>PRK14532 adenylate kinase; Provisional
Probab=100.00 E-value=5.7e-31 Score=190.84 Aligned_cols=180 Identities=31% Similarity=0.596 Sum_probs=161.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCeE
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF 101 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 101 (215)
.|+|.|+|||||||+|+.|++++|+.+++.|++++..+..+++.+..+...+..|..++++....++...+.... +.++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA 81 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence 589999999999999999999999999999999999988888888888888999999999999999988886654 7899
Q ss_pred EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025 102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (215)
|+||||.+..+...+..+ ....||.+|+|++|++++.+|+.+| ..+++++..+.+.+|+..|+....++.++|.+
T Consensus 82 vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~ 161 (188)
T PRK14532 82 IFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAG 161 (188)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988877543 4568999999999999999999988 35678888889999999999999998899988
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 177 KGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 177 ~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
.+.++.+|++.++++++++|...+..
T Consensus 162 ~~~~~~id~~~~~eev~~~I~~~l~~ 187 (188)
T PRK14532 162 QGKLTEVDGMGSIEAVAASIDAALEG 187 (188)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 77789999999999999999988753
No 8
>PRK14527 adenylate kinase; Provisional
Probab=100.00 E-value=5.4e-31 Score=191.21 Aligned_cols=183 Identities=33% Similarity=0.651 Sum_probs=164.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
..++.+|+|.|+|||||||+|+.|++++++.+++.|++++.....+.+.+.....++..+...+++....++.+.+....
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~ 82 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME 82 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence 45788999999999999999999999999999999999999888888888888888899999999999999999887655
Q ss_pred CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHH
Q 028025 98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQ 172 (215)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (215)
+.++|+||||.+..+...+..+ .+..++.+++|++|++++.+|+.+| ..++.++..+.+.+|+..|.....++.+
T Consensus 83 ~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~ 162 (191)
T PRK14527 83 PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVD 162 (191)
T ss_pred CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 6689999999998888766653 4567888999999999999999999 4568888899999999999999999999
Q ss_pred HHHhcCcEEEEcCCCCHHHHHHHHHHhh
Q 028025 173 YYEAKGKVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 173 ~~~~~~~~~~id~~~~~~e~~~~i~~~l 200 (215)
+|.+.+.++.||++.++++++++|...+
T Consensus 163 ~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 163 YYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 9999888999999999999999998765
No 9
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=7.4e-31 Score=189.20 Aligned_cols=179 Identities=28% Similarity=0.590 Sum_probs=162.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 100 (215)
+.|+|.|+|||||||+|+.|++.+|+.+++.|++++..+..+.+.+..+..++..|...++.....++.+.+.... ..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 4689999999999999999999999999999999999998888888888999999999999998888988887654 678
Q ss_pred EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (215)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (215)
+|+||||.+..+...+..+ ....+|.+|+|++|++++.+|+..| ..++.++..+.+.+|+..|+....++.++|.
T Consensus 82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~ 161 (186)
T PRK14528 82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYA 161 (186)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999998887763 3467999999999999999999998 5678888999999999999999999999999
Q ss_pred hcCcEEEEcCCCCHHHHHHHHHHhh
Q 028025 176 AKGKVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 176 ~~~~~~~id~~~~~~e~~~~i~~~l 200 (215)
..+.++.+|++.++++++..|.+.+
T Consensus 162 ~~~~~~~i~~~~~~~~v~~~~~~~~ 186 (186)
T PRK14528 162 AQKKLSQVNGVGSLEEVTSLIQKEL 186 (186)
T ss_pred hCCCEEEEECCCCHHHHHHHHHHhC
Confidence 9999999999999999999987653
No 10
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=100.00 E-value=8.4e-31 Score=189.29 Aligned_cols=178 Identities=66% Similarity=1.105 Sum_probs=158.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEE
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (215)
+|+|.|+|||||||+|+.|++++|+.+++.+|+++..+..+++.+..+..++.+|...+++....++...+....+.++|
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v 80 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL 80 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence 48999999999999999999999999999999999998877788888888899999999999999999888765578899
Q ss_pred EeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcC
Q 028025 103 IDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG 178 (215)
Q Consensus 103 idg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (215)
+||||.+..+...|..+ ....|+.+|+|++|++++.+|+.+| ..++.++..+.+.+|+..|.....++.++|...+
T Consensus 81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~ 160 (183)
T TIGR01359 81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKG 160 (183)
T ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999888877763 3357999999999999999999998 2356667788999999999999999999898877
Q ss_pred cEEEEcCCCCHHHHHHHHHHhh
Q 028025 179 KVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 179 ~~~~id~~~~~~e~~~~i~~~l 200 (215)
.++.||++.+++++++.|.+.+
T Consensus 161 ~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 161 KVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred CEEEEECCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 11
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=2.3e-30 Score=190.59 Aligned_cols=177 Identities=36% Similarity=0.696 Sum_probs=160.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC--CCeE
Q 028025 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKF 101 (215)
Q Consensus 24 I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 101 (215)
|+|.|+|||||||+|+.|++++|+.+++.+|+++..+...++.+..+...+..|..++++.+..++...+.... +.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ 81 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF 81 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence 89999999999999999999999999999999999988888888889999999999999999999999997633 6799
Q ss_pred EEeCCCCCHHHHHHHHHhcCC-CCcEEEEEecCHHHHHHHHhhcc------------------------C-----CCCCC
Q 028025 102 LIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRN------------------------Q-----GREDD 151 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~-~~~~~i~L~~~~e~~~~R~~~r~------------------------~-----~~~~~ 151 (215)
|+||||.+..+...+.. ... .++.+|+|++|.+++.+|+..|. . +|.++
T Consensus 82 ilDGfPrt~~Qa~~l~~-~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD 160 (210)
T TIGR01351 82 ILDGFPRTLSQAEALDA-LLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDD 160 (210)
T ss_pred EEeCCCCCHHHHHHHHH-HhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCC
Confidence 99999999999998887 555 68999999999999999999881 0 26678
Q ss_pred cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
..+.+.+|+..|+....++.++|...+.++.+|++.+++++++.|.+.|.
T Consensus 161 ~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 210 (210)
T TIGR01351 161 TEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEALK 210 (210)
T ss_pred CHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhhC
Confidence 89999999999999999999999998889999999999999999998763
No 12
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=1.5e-30 Score=190.26 Aligned_cols=179 Identities=26% Similarity=0.547 Sum_probs=158.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
+.|+|.|+|||||||+++.|++++++.+++.++++++.+..+++.+..+.+++..|..+|+++...++.+++......++
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~ 80 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW 80 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence 35899999999999999999999999999999999999888899999999999999999999999999999987667899
Q ss_pred EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc---cC----------------------------C
Q 028025 102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR---NQ----------------------------G 147 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r---~~----------------------------~ 147 (215)
|+||||++..+...|... ....|+.+|+|++|.+++.+|+..| .. +
T Consensus 81 iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~ 160 (223)
T PRK14529 81 LLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELST 160 (223)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCcccc
Confidence 999999999999988753 3568999999999999999999988 10 2
Q ss_pred CCCCc-HHHHHHHHHHHhhc---chhHHHHHHh-----cCcEEEEcCCCCHHHHHHHHHHhh
Q 028025 148 REDDN-VETIRKRFKVFLES---SLPVVQYYEA-----KGKVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 148 ~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~id~~~~~~e~~~~i~~~l 200 (215)
|.++. .+.+.+|+..|++. ..++.++|.. .+.++.+|++++++++++.|.+.+
T Consensus 161 R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 161 RADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred CCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 56664 67999999999987 4467789985 567999999999999999998876
No 13
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.97 E-value=1.3e-29 Score=187.13 Aligned_cols=181 Identities=36% Similarity=0.696 Sum_probs=161.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 100 (215)
+.|+|.|+|||||||+|+.|++++|+.+++.+++++..+..+.+.+..+...+..+...+++....++.+.+.... ..+
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g 80 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG 80 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence 4699999999999999999999999999999999999988888888889999999999999999999999887654 458
Q ss_pred EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCC
Q 028025 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR 148 (215)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~-----------------------------~~~ 148 (215)
+|+||||.+..+...+.+. ....++.+|+|++|.+++.+|+..|. .++
T Consensus 81 ~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r 160 (215)
T PRK00279 81 FLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQR 160 (215)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCC
Confidence 9999999999888877542 34578899999999999999999882 145
Q ss_pred CCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
.++..+.+.+|+..|.....++.++|...+.++.||++.+++++++.|...|..
T Consensus 161 ~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 161 ADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 678899999999999999999999999888899999999999999999988764
No 14
>PRK02496 adk adenylate kinase; Provisional
Probab=99.97 E-value=3.6e-29 Score=180.76 Aligned_cols=178 Identities=33% Similarity=0.633 Sum_probs=159.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 100 (215)
+.|+|.|+|||||||+|+.|++.+|+.+++.|++++..+..+.+.+.....++..+...+++....++...+.+.. ..+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g 81 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG 81 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence 5699999999999999999999999999999999999988888888888888999999999999999998887544 568
Q ss_pred EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK 177 (215)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (215)
+|+||||.+..+...+..+ ....|+.+|+|++|.+++.+|+..| ++.++..+.+.+|+..|.....++.++|...
T Consensus 82 ~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R--~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~ 159 (184)
T PRK02496 82 WILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLAR--GRKDDTEEVIRRRLEVYREQTAPLIDYYRDR 159 (184)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998887766653 3357899999999999999999998 7777888999999999999999999999887
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhC
Q 028025 178 GKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 178 ~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
+.++.||++.++++++++|...+.
T Consensus 160 ~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 160 QKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC
Confidence 788999999999999999998774
No 15
>PRK14526 adenylate kinase; Provisional
Probab=99.97 E-value=1.8e-29 Score=184.38 Aligned_cols=179 Identities=30% Similarity=0.573 Sum_probs=161.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCeE
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF 101 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 101 (215)
.|+|.|+|||||||+++.|++.+++.+++.|++++..+..+.+.+..+...+..+...|++....++.+.+.... ..++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~ 81 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF 81 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence 588999999999999999999999999999999999988888889999999999999999999999999987654 6789
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCCCCCc
Q 028025 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDN 152 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~-----------------------------~~~~~~~ 152 (215)
|+||||++..+...|.. .... ..+++|.+|++++.+|+..|. .+|.++.
T Consensus 82 ilDGfPR~~~Qa~~l~~-~~~~-~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~ 159 (211)
T PRK14526 82 ILDGFPRNINQAKALDK-FLPN-IKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDK 159 (211)
T ss_pred EEECCCCCHHHHHHHHH-hcCC-CEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCC
Confidence 99999999999999887 4333 357889999999999999871 1477889
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
.+.+.+|+..|+....++.++|...+.++.+|++.+++++++.|.+.|...
T Consensus 160 ~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~~ 210 (211)
T PRK14526 160 EESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISKK 210 (211)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHccc
Confidence 999999999999999999999999888999999999999999999988753
No 16
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.97 E-value=6.4e-29 Score=183.36 Aligned_cols=179 Identities=23% Similarity=0.490 Sum_probs=160.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--c
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S 96 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 96 (215)
..|+.|+|.|+|||||||+|+.|++.+|+.+++.|+++++.+..++..+..+.+++..|...+++.+.+++...+.+ .
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 83 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTD 83 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcc
Confidence 45678999999999999999999999999999999999999888888999999999999999999999999999876 3
Q ss_pred C-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc------------------------------
Q 028025 97 G-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN------------------------------ 145 (215)
Q Consensus 97 ~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~------------------------------ 145 (215)
. ..++++||||++..+...+.. . ..++++|+|+++.+++.+|+..|.
T Consensus 84 ~~~~g~iLDGfPRt~~Qa~~l~~-~-~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c 161 (229)
T PTZ00088 84 DCFKGFILDGFPRNLKQCKELGK-I-TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADC 161 (229)
T ss_pred ccCceEEEecCCCCHHHHHHHHh-c-CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCcc
Confidence 3 689999999999999988876 3 578999999999999999998871
Q ss_pred ---------CCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCc-EEEE---cCCCCHHHHHHHHHHh
Q 028025 146 ---------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK-VRKI---DAAKPVAEVFDAVKAV 199 (215)
Q Consensus 146 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i---d~~~~~~e~~~~i~~~ 199 (215)
.+|.++..+.+.+|+..|.+...++.++|...+. ++.+ |++.+++++++.|.+.
T Consensus 162 ~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 228 (229)
T PTZ00088 162 EGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR 228 (229)
T ss_pred cccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence 0466777899999999999999999999999887 7777 7899999999988764
No 17
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.97 E-value=7.5e-28 Score=174.63 Aligned_cols=182 Identities=48% Similarity=0.877 Sum_probs=155.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc--C
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G 97 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 97 (215)
+.++|+|.|+|||||||+|+.|++.+|+.+++.|++++..+......+..+...+..+...+...+...+...+... .
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT 81 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc
Confidence 34689999999999999999999999999999999999887666666667777778888888887777777766542 2
Q ss_pred CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (215)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (215)
+.++|+||+|....+...+.. ....|+++|+|++|++++.+|+.+| ..++.++..+.+.+|+..|+....++..+|.
T Consensus 82 ~~~~i~dg~~~~~~q~~~~~~-~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~ 160 (188)
T TIGR01360 82 SKGFLIDGYPREVKQGEEFER-RIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYE 160 (188)
T ss_pred CCeEEEeCCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHH
Confidence 789999999998888887776 6677999999999999999999988 2457777888999999999998888888888
Q ss_pred hcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 176 AKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 176 ~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
..+.++.+|++.+++++++.|...++.
T Consensus 161 ~~~~~~~id~~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 161 TKGKLRKINAEGTVDDVFLQVCTAIDK 187 (188)
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 777788999999999999999988753
No 18
>PRK14530 adenylate kinase; Provisional
Probab=99.96 E-value=2.1e-27 Score=175.50 Aligned_cols=176 Identities=35% Similarity=0.656 Sum_probs=149.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH-----HcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-----KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (215)
+.|+|.|+|||||||+|+.|++.+|+.+++.|++++... ......+. ....+..|...+++....++...+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~- 81 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD- 81 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc-
Confidence 369999999999999999999999999999999999876 22333333 45567888999999888888887654
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-c----------------------------CC
Q 028025 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N----------------------------QG 147 (215)
Q Consensus 97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~----------------------------~~ 147 (215)
..++|+||||.+..+...+.. . ..++.+|+|++|.+++.+|+.+| . ..
T Consensus 82 -~~~~IldG~pr~~~q~~~l~~-~-~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~ 158 (215)
T PRK14530 82 -ADGFVLDGYPRNLEQAEYLES-I-TDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQ 158 (215)
T ss_pred -CCCEEEcCCCCCHHHHHHHHH-h-cCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccC
Confidence 468999999999988887765 2 45889999999999999999887 1 13
Q ss_pred CCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
+.++..+.+.+|+..|.....++.++|...+.++.||++.+++++++.|...|..
T Consensus 159 R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 159 RDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 5667788999999999999999999999888889999999999999999998864
No 19
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.96 E-value=3.7e-27 Score=171.83 Aligned_cols=168 Identities=41% Similarity=0.758 Sum_probs=149.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCeE
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF 101 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 101 (215)
.|+|+|+|||||||+|+.|++.+|+.+++.+++++..+......+..+...+..+...+.+....++...+.... +.++
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~ 80 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF 80 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence 389999999999999999999999999999999999988887888888888888899999999999998887643 6789
Q ss_pred EEeCCCCCHHHHHHHHHhcCC---CCcEEEEEecCHHHHHHHHhhcc---------------------CCCCCCcHHHHH
Q 028025 102 LIDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSEEEMERRILNRN---------------------QGREDDNVETIR 157 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~---~~~~~i~L~~~~e~~~~R~~~r~---------------------~~~~~~~~~~~~ 157 (215)
|+||||.+..+...|.. ... .++++|+|++|++++.+|+.+|. ..+.++..+.+.
T Consensus 81 vldg~Pr~~~q~~~l~~-~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i~ 159 (194)
T cd01428 81 ILDGFPRTVDQAEALDE-LLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIK 159 (194)
T ss_pred EEeCCCCCHHHHHHHHH-HHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHHH
Confidence 99999999999888887 444 78999999999999999999982 136677889999
Q ss_pred HHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHH
Q 028025 158 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAE 191 (215)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e 191 (215)
+|+..|.....++.++|...+.++.+|++.++++
T Consensus 160 ~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~ 193 (194)
T cd01428 160 KRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDE 193 (194)
T ss_pred HHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCc
Confidence 9999999999999999999888999999888775
No 20
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.96 E-value=2.2e-26 Score=163.58 Aligned_cols=172 Identities=34% Similarity=0.657 Sum_probs=156.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 100 (215)
+.|+|.|+|||||||+|+.|++++++.|++.|++++......++.+.....++..+..+++......+...+.... ..+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~ 80 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG 80 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999998764 228
Q ss_pred EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCC-CCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQG-REDDNVETIRKRFKVFLESSLPVVQYYEA 176 (215)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (215)
+|+||||.+..+...+... .+...+.++.++++.+.+..|+..| . +.++..+.+.+|+..|+....++..+|.
T Consensus 81 ~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r--~~r~dd~~~~~~~R~~~y~~~~~pli~~y~- 157 (178)
T COG0563 81 FILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGR--RVREDDNEETVKKRLKVYHEQTAPLIEYYS- 157 (178)
T ss_pred EEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCc--cccccCCHHHHHHHHHHHHhcccchhhhhe-
Confidence 9999999999999888864 2468899999999999999999988 3 7888999999999999999999998887
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHhh
Q 028025 177 KGKVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 177 ~~~~~~id~~~~~~e~~~~i~~~l 200 (215)
+.+|+..+++++++.+...+
T Consensus 158 ----~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 158 ----VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred ----eeccCCCCHHHHHHHHHHhh
Confidence 88999999999999998765
No 21
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.95 E-value=1.2e-26 Score=162.45 Aligned_cols=146 Identities=44% Similarity=0.850 Sum_probs=129.7
Q ss_pred EEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc-CCCeEEEe
Q 028025 26 VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLID 104 (215)
Q Consensus 26 i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iid 104 (215)
|.|||||||||+|+.||+++|+.+++.+++++..+...++.+..+.+.+.+|..+|++++..++...+... ...++|+|
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999876 48999999
Q ss_pred CCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcC
Q 028025 105 GFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG 178 (215)
Q Consensus 105 g~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (215)
|||.+..+...|... ....|+.+|+|++|.+.+.+|+.+ +..+.+.+|+..|++...++.++|.+.+
T Consensus 81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~-------d~~~~i~~Rl~~y~~~~~~i~~~y~~~g 150 (151)
T PF00406_consen 81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ-------DNEEVIKKRLEEYRENTEPILDYYKEQG 150 (151)
T ss_dssp SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT-------GSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999888762 467889999999999999999984 6678999999999999999999998754
No 22
>PLN02842 nucleotide kinase
Probab=99.95 E-value=4.8e-26 Score=182.59 Aligned_cols=180 Identities=30% Similarity=0.641 Sum_probs=159.2
Q ss_pred EEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC--CCeEE
Q 028025 25 FVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKFL 102 (215)
Q Consensus 25 ~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i 102 (215)
+|.|+|||||||+|+.|++++++.+++.+++++..+..+++.+..+.+++..|...+++.+..++.+++.... ..++|
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 4899999999999999999999999999999999989999999999999999999999999999988886543 56799
Q ss_pred EeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc----c---------------------CCCCCCcHHHHH
Q 028025 103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----N---------------------QGREDDNVETIR 157 (215)
Q Consensus 103 idg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r----~---------------------~~~~~~~~~~~~ 157 (215)
+||||.+..+...+.. ....||++|+|++|++++.+|+.+| . .+|.++..+.+.
T Consensus 81 LDGfPRt~~Qa~~Le~-~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ik 159 (505)
T PLN02842 81 LDGYPRSFAQAQSLEK-LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVK 159 (505)
T ss_pred EeCCCCcHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHH
Confidence 9999999999888887 6778999999999999999999877 1 146678899999
Q ss_pred HHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcccc
Q 028025 158 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKV 207 (215)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~~ 207 (215)
+|+..|.+...++..+|.. .+..+|++.++++++++|.+.|......+
T Consensus 160 kRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~~L~~~ 207 (505)
T PLN02842 160 ARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQIQKDA 207 (505)
T ss_pred HHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999888864 47889999999999999998887665443
No 23
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.91 E-value=2.2e-22 Score=145.80 Aligned_cols=185 Identities=38% Similarity=0.655 Sum_probs=165.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-C
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-N 98 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 98 (215)
++...++.|+|||||+|+|..+++.++..+++.+|++|+.+..+++.+......++.+...+++++..++...+.... .
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~ 93 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ 93 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence 678899999999999999999999999999999999999999999999999999999999999999887777776653 7
Q ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc----c-------------------------CCCC
Q 028025 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----N-------------------------QGRE 149 (215)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r----~-------------------------~~~~ 149 (215)
.++++||||++..+...+.. ....+|.+|.|++|.+.+.+|+..| . .++.
T Consensus 94 ~~~ildg~Prt~~qa~~l~~-~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~ 172 (235)
T KOG3078|consen 94 KGFILDGFPRTVQQAEELLD-RIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQRE 172 (235)
T ss_pred cccccCCCCcchHHHHHHHH-ccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCc
Confidence 89999999999998888777 8899999999999999999999887 1 1356
Q ss_pred CCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK 206 (215)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~ 206 (215)
++.++.+..|+..|.+...++.++|...+.+..+++.. .++++..|...+.....+
T Consensus 173 dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~ 228 (235)
T KOG3078|consen 173 DDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPE 228 (235)
T ss_pred cccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhhh
Confidence 78899999999999999999999999998777777766 899999999888766443
No 24
>PRK01184 hypothetical protein; Provisional
Probab=99.86 E-value=4.2e-19 Score=128.25 Aligned_cols=170 Identities=24% Similarity=0.337 Sum_probs=112.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc-CCC-----cHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSE-----NGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (215)
++|+|+|+|||||||+++ +++++|+.+++.||+++..+.. +.+ ++........ . +.......++...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~--~-~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK--E-LGMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH--H-HChHHHHHHHHHHHHh
Confidence 589999999999999987 6789999999999999988743 221 2222222111 1 1122223343444544
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCC--CcHHHHHHHHHHHhhcchhHHHH
Q 028025 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED--DNVETIRKRFKVFLESSLPVVQY 173 (215)
Q Consensus 96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 173 (215)
.++..+|+||+ ....+...+.+ ....+..+|++.+|++++.+|+..| ++.. ...+.+.++...... .+..+.
T Consensus 78 ~~~~~vvidg~-r~~~e~~~~~~-~~~~~~~~i~v~~~~~~~~~Rl~~R--~~~~d~~~~~~~~~r~~~q~~--~~~~~~ 151 (184)
T PRK01184 78 KGDEVVVIDGV-RGDAEVEYFRK-EFPEDFILIAIHAPPEVRFERLKKR--GRSDDPKSWEELEERDERELS--WGIGEV 151 (184)
T ss_pred cCCCcEEEeCC-CCHHHHHHHHH-hCCcccEEEEEECCHHHHHHHHHHc--CCCCChhhHHHHHHHHHHHhc--cCHHHH
Confidence 45789999998 56677777766 4444668999999999999999988 4432 245667666654321 112222
Q ss_pred HHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025 174 YEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 174 ~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
+. ... ++|+++.+.+++..++.+++...
T Consensus 152 ~~-~ad-~vI~N~~~~~~l~~~v~~~~~~~ 179 (184)
T PRK01184 152 IA-LAD-YMIVNDSTLEEFRARVRKLLERI 179 (184)
T ss_pred HH-hcC-EEEeCCCCHHHHHHHHHHHHHHH
Confidence 32 223 55567779999999999887643
No 25
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.83 E-value=1.3e-18 Score=117.97 Aligned_cols=169 Identities=17% Similarity=0.203 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
++|.|.|+|||||||+|+.||+++|+.+++.|.++|+......-.-..+..+-.....+ +......... +.. ..++
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~i-D~~iD~rq~e-~a~--~~nv 76 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEI-DKEIDRRQKE-LAK--EGNV 76 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchh-hHHHHHHHHH-HHH--cCCe
Confidence 57999999999999999999999999999999999998766332333343333322221 1111222222 222 5788
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH-hcC--
Q 028025 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE-AKG-- 178 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 178 (215)
|++|. ...|.. . ..+|+.|||.+|.++..+|+.+|+.....+.......|-..-.+ ...+.|. +.+
T Consensus 77 Vlegr------LA~Wi~-k-~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~k---RY~~~YgIDidDl 145 (179)
T COG1102 77 VLEGR------LAGWIV-R-EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKK---RYKKIYGIDIDDL 145 (179)
T ss_pred EEhhh------hHHHHh-c-cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---HHHHHhCCCCccc
Confidence 88874 344443 3 67899999999999999999998332222222222222221111 1122232 111
Q ss_pred --cEEEEcC-CCCHHHHHHHHHHhhCCCcc
Q 028025 179 --KVRKIDA-AKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 179 --~~~~id~-~~~~~e~~~~i~~~l~~~~~ 205 (215)
.-+++|+ .-++++++.-+...+.....
T Consensus 146 SiyDLVinTs~~~~~~v~~il~~aid~~~~ 175 (179)
T COG1102 146 SIYDLVINTSKWDPEEVFLILLDAIDALSI 175 (179)
T ss_pred eeeEEEEecccCCHHHHHHHHHHHHHhhcc
Confidence 2345555 66888888888887765543
No 26
>PRK13973 thymidylate kinase; Provisional
Probab=99.82 E-value=5.3e-18 Score=124.98 Aligned_cols=174 Identities=22% Similarity=0.307 Sum_probs=110.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh---CCeEeeH--------HHHHHHHHHcC--CCcHHHHHHHHHcCCCCCHHHHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSA--------GDLLRAEIKSG--SENGTMIQNMIKEGKIVPSEVTIK 87 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~--------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 87 (215)
+++|+|+|++||||||+++.|++.+ |+.++.. ++.+|+.+... ...+......+... ...+.+..
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~~ 80 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVEE 80 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHHH
Confidence 6899999999999999999999999 7776654 77777766542 12222222222211 11122234
Q ss_pred HHHHHHHccCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccC----CCC
Q 028025 88 LLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQ----GRE 149 (215)
Q Consensus 88 ~~~~~~~~~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~----~~~ 149 (215)
.+...+.. +..||.|+|..+ ..+...+... ..+.||++|||++|++++.+|+.+|.. ++.
T Consensus 81 ~i~~~l~~--g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~ 158 (213)
T PRK13973 81 VIRPALAR--GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRF 158 (213)
T ss_pred HHHHHHHC--CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCch
Confidence 45555543 788999986522 2233444321 346899999999999999999998811 122
Q ss_pred C-CcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025 150 D-DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (215)
Q Consensus 150 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~ 204 (215)
+ ...+...++...|... .+.+ ...+.+||++.+++++.++|...+....
T Consensus 159 e~~~~~~~~~~~~~y~~l----~~~~--~~~~~~Ida~~~~e~V~~~I~~~i~~~~ 208 (213)
T PRK13973 159 EKEDLAFHEKRREAFLQI----AAQE--PERCVVIDATASPEAVAAEIWAAVDQRL 208 (213)
T ss_pred hhchHHHHHHHHHHHHHH----HHhC--CCcEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 2 1233444444444432 1111 2357889999999999999998886543
No 27
>PRK03839 putative kinase; Provisional
Probab=99.80 E-value=6e-18 Score=121.79 Aligned_cols=153 Identities=19% Similarity=0.338 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-cCCCe
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDK 100 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 100 (215)
++|+|+|+|||||||+++.|++++++.+++.|++++.. . ....... .+. .....+...+.. ..+..
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~--~---~~~~~~~---~~~-----~~~~~l~~~~~~~~~~~~ 67 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK--G---IGEEKDD---EME-----IDFDKLAYFIEEEFKEKN 67 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc--C---CcccCCh---hhh-----cCHHHHHHHHHHhccCCC
Confidence 36999999999999999999999999999999987653 1 1110000 001 112222222222 12566
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHH-HHHhhcchhHHHHHHhcCc
Q 028025 101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF-KVFLESSLPVVQYYEAKGK 179 (215)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 179 (215)
+|+||+.. ....++.+|||+++++++.+|+..| +.. ...+.... ..+.+. ...+.+.....
T Consensus 68 vIidG~~~-----------~l~~~~~vi~L~~~~~~~~~Rl~~R--~~~---~~~~~~~~~~~~~~~--~~~~~~~~r~~ 129 (180)
T PRK03839 68 VVLDGHLS-----------HLLPVDYVIVLRAHPKIIKERLKER--GYS---KKKILENVEAELVDV--CLCEALEEKEK 129 (180)
T ss_pred EEEEeccc-----------cccCCCEEEEEECCHHHHHHHHHHc--CCC---HHHHHHHHHHHHHHH--HHHHHHHhcCC
Confidence 99999642 1235788999999999999999987 321 11111111 111110 12244555667
Q ss_pred EEEEcCC-CCHHHHHHHHHHhhCCCcc
Q 028025 180 VRKIDAA-KPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 180 ~~~id~~-~~~~e~~~~i~~~l~~~~~ 205 (215)
++.+|++ .++++++++|.+.+.....
T Consensus 130 ~~~Id~~~~s~eev~~~I~~~l~~~~~ 156 (180)
T PRK03839 130 VIEVDTTGKTPEEVVEEILELIKSGKK 156 (180)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 8899985 6999999999999876533
No 28
>PRK06762 hypothetical protein; Provisional
Probab=99.79 E-value=3.7e-17 Score=116.18 Aligned_cols=158 Identities=16% Similarity=0.222 Sum_probs=97.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh--CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
+|++|+|+|+|||||||+|+.|++.+ ++.+++.|.+.+.. ..... .......+......+..+. .
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l-~~~~~----------~~~~~~~~~~~~~~~~~~~--~ 67 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM-LRVKD----------GPGNLSIDLIEQLVRYGLG--H 67 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh-ccccC----------CCCCcCHHHHHHHHHHHHh--C
Confidence 47899999999999999999999999 56677775544332 21110 0011112222333333332 2
Q ss_pred CCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCC-CCcHHHHHHHHHHHhhcchhHHHHH
Q 028025 98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRE-DDNVETIRKRFKVFLESSLPVVQYY 174 (215)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (215)
+..+|+|+..........+..+ ....+...|||++|.+++.+|+.+| +.. ....+.+..++.... .+
T Consensus 68 g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R--~~~~~~~~~~l~~~~~~~~----~~---- 137 (166)
T PRK06762 68 CEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTR--PKSHEFGEDDMRRWWNPHD----TL---- 137 (166)
T ss_pred CCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcc--cccccCCHHHHHHHHhhcC----Cc----
Confidence 7789999865433333333332 3344678999999999999999988 331 223455554433322 11
Q ss_pred HhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025 175 EAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 175 ~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
. ....++++++.++++++++|...+.
T Consensus 138 ~-~~~~~~~~~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 138 G-VIGETIFTDNLSLKDIFDAILTDIG 163 (166)
T ss_pred C-CCCeEEecCCCCHHHHHHHHHHHhc
Confidence 1 1235677778899999999988764
No 29
>PRK04040 adenylate kinase; Provisional
Probab=99.79 E-value=9.6e-18 Score=120.82 Aligned_cols=172 Identities=15% Similarity=0.236 Sum_probs=106.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh--CCeEeeHHHHHHHHHHcCC--CcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGS--ENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~--~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (215)
+++|+|+|+|||||||+++.|++.+ ++.+++.|+++++...... ...+.+... ....+..+.......+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l----~~~~~~~~~~~a~~~i~~~ 77 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKL----PPEEQKELQREAAERIAEM 77 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhC----ChhhhHHHHHHHHHHHHHh
Confidence 6789999999999999999999999 8999999999887765522 222222211 1111112222333333332
Q ss_pred C-CCeEEEeCCCCCHH--------HHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHhhc
Q 028025 97 G-NDKFLIDGFPRNEE--------NRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLES 166 (215)
Q Consensus 97 ~-~~~~iidg~~~~~~--------~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~ 166 (215)
. +..+|+||+..... ....+ ....|+.+|++.+++++..+|..+. .++|..+..+.+..++......
T Consensus 78 ~~~~~~~~~~h~~i~~~~g~~~~~~~~~~---~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~ 154 (188)
T PRK04040 78 AGEGPVIVDTHATIKTPAGYLPGLPEWVL---EELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAA 154 (188)
T ss_pred hcCCCEEEeeeeeeccCCCCcCCCCHHHH---hhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHH
Confidence 2 56699999653111 11122 3458899999999999988887742 2367777777777766554332
Q ss_pred chhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhh
Q 028025 167 SLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 167 ~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l 200 (215)
... +..+......+++|.++.+++.++++...+
T Consensus 155 a~~-~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 155 AMA-YAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHH-HHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 111 111222233445555555999999998776
No 30
>PRK06217 hypothetical protein; Validated
Probab=99.79 E-value=1.4e-17 Score=120.00 Aligned_cols=161 Identities=17% Similarity=0.241 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
+.|+|+|+|||||||+++.|++.+|+.+++.|++++.. .+..+. ...+.+.....+...+.. +..+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~--~~~~ 67 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFT----------TKRPPEERLRLLLEDLRP--REGW 67 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCcc----------ccCCHHHHHHHHHHHHhc--CCCE
Confidence 56999999999999999999999999999998877632 111111 122333334444444432 5679
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc---CCC---CCC----cHHHHHHHHHHHhhcc---h
Q 028025 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN---QGR---EDD----NVETIRKRFKVFLESS---L 168 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~---~~~---~~~----~~~~~~~~~~~~~~~~---~ 168 (215)
|+||++.. .... ....+|.+|||++|.+++..|+.+|. .++ ... ....+.++...|.... .
T Consensus 68 vi~G~~~~--~~~~----~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 141 (183)
T PRK06217 68 VLSGSALG--WGDP----LEPLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDTAGPEGR 141 (183)
T ss_pred EEEccHHH--HHHH----HHhhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccCCCCCcc
Confidence 99997632 2121 23457889999999999999999882 122 111 1223444443443211 1
Q ss_pred hH---HHHHHhc-CcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 169 PV---VQYYEAK-GKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 169 ~~---~~~~~~~-~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
.+ ..++... ..++.+++..+++++++.|...|.+
T Consensus 142 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 142 SLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS 179 (183)
T ss_pred cHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 11 1222322 4678889988999999999998854
No 31
>PRK13975 thymidylate kinase; Provisional
Probab=99.78 E-value=5.3e-17 Score=118.45 Aligned_cols=171 Identities=19% Similarity=0.281 Sum_probs=95.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEe--e----HHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL--S----AGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (215)
+++|+|+|++||||||+++.|++.++..+. . .+..++..+.............+.... ......+...+.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r----~~~~~~i~~~~~ 77 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADR----VEHVKEIEEDLK 77 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHH----HHHHHHHHHHHc
Confidence 478999999999999999999999985322 1 123344433222111111111110000 000111222222
Q ss_pred ccCCCeEEEeCCCCC-----------HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH-H
Q 028025 95 ESGNDKFLIDGFPRN-----------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK-V 162 (215)
Q Consensus 95 ~~~~~~~iidg~~~~-----------~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~-~ 162 (215)
...+|.|+|..+ ..+...+.. ....|+++|||++|++++.+|+..| +++......+.++.. .
T Consensus 78 ---~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~-~~~~pd~vi~L~~~~e~~~~Rl~~r--~~~~~~~~~~~~~~~~~ 151 (196)
T PRK13975 78 ---KRDVVCDRYVYSSIAYQSVQGIDEDFIYSINR-YAKKPDLVFLLDVDIEEALKRMETR--DKEIFEKKEFLKKVQEK 151 (196)
T ss_pred ---CCEEEEECchhHHHHHhcccCCCHHHHHHHHh-CCCCCCEEEEEcCCHHHHHHHHhcc--CccccchHHHHHHHHHH
Confidence 367899976532 122222333 3467999999999999999999988 433222223333332 3
Q ss_pred HhhcchhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhCCC
Q 028025 163 FLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~~~ 203 (215)
|.+... ...+.....++++|++ .++++++++|.+.+...
T Consensus 152 y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~ 191 (196)
T PRK13975 152 YLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDK 191 (196)
T ss_pred HHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 332211 1112222347888884 89999999999888644
No 32
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.76 E-value=1.2e-17 Score=129.71 Aligned_cols=164 Identities=21% Similarity=0.240 Sum_probs=105.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (215)
+.+|++.|+|||||||+|+.|++++ ++.+++.|++ +..+......+.. .+...............+...+. .+.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~--~g~ 76 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK--SGK 76 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH--cCC
Confidence 5789999999999999999999999 8999999664 4443322111100 00000000001122233333333 268
Q ss_pred eEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHH---HHHHHHhhcchhHHHHH
Q 028025 100 KFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR---KRFKVFLESSLPVVQYY 174 (215)
Q Consensus 100 ~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 174 (215)
.+|+|+++.....+..|..+ .....-.+++|.+|.+++.+|+.+| +.+....+.+. ++++.+...+.|++..+
T Consensus 77 ~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~ 154 (300)
T PHA02530 77 SVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR--GERAVPEDVLRSMFKQMKEYRGLVWPVYTAD 154 (300)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc--CcCCCCHHHHHHHHHHHHHhcCCCCceeccC
Confidence 89999988887777766553 1112223799999999999999999 54444555555 78888877777776666
Q ss_pred HhcCcEEEEcCCCCHHH
Q 028025 175 EAKGKVRKIDAAKPVAE 191 (215)
Q Consensus 175 ~~~~~~~~id~~~~~~e 191 (215)
.....++.+|.++++.+
T Consensus 155 ~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 155 PGLPKAVIFDIDGTLAK 171 (300)
T ss_pred CCCCCEEEEECCCcCcC
Confidence 55556788886666543
No 33
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.76 E-value=1.8e-16 Score=114.98 Aligned_cols=174 Identities=22% Similarity=0.340 Sum_probs=104.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-CCC-CHHHH-------HH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-KIV-PSEVT-------IK 87 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~-------~~ 87 (215)
++++|+|.|.-||||||+++.|++.+. +.++-. ++ +.+++.++.+.+.+.++ ... +.... .+
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t----rE--P~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~ 75 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT----RE--PGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQ 75 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE----eC--CCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999994 333321 11 33455555565555543 111 11111 12
Q ss_pred HHHHHHHc--cCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028025 88 LLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (215)
Q Consensus 88 ~~~~~~~~--~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~ 151 (215)
.+.+.+.. ..+..||.|.|..+ .++...+.+. ....||+.+||++|+++..+|+.+| +...+
T Consensus 76 h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r--~~~~~ 153 (208)
T COG0125 76 HLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKR--GELRD 153 (208)
T ss_pred HHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhc--CCccc
Confidence 22222221 12789999986643 2344444331 2348999999999999999999988 22211
Q ss_pred cHHHHHHHHHHHhhcchhHHHHHHhcC--cEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025 152 NVETIRKRFKVFLESSLPVVQYYEAKG--KVRKIDAAKPVAEVFDAVKAVFTPKD 204 (215)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~id~~~~~~e~~~~i~~~l~~~~ 204 (215)
..+ ..-..+++.++..+..+.... .+++||++.+++++.+.|...+....
T Consensus 154 r~E---~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l 205 (208)
T COG0125 154 RFE---KEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERL 205 (208)
T ss_pred hhh---hHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 111 111112222222221122222 48999999999999999998887543
No 34
>PRK13949 shikimate kinase; Provisional
Probab=99.76 E-value=3e-16 Score=111.35 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=95.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEE
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (215)
.|+|.|+|||||||+++.|++.+++.+++.|+++..... ....+.+. ..+.....+...+++.. +... ...||
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~--~~~~~~~~---~~g~~~fr~~e~~~l~~-l~~~-~~~vi 75 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH--KTVGDIFA---ERGEAVFRELERNMLHE-VAEF-EDVVI 75 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC--ccHHHHHH---HhCHHHHHHHHHHHHHH-HHhC-CCEEE
Confidence 599999999999999999999999999999887765421 11222111 22222223333444444 3222 33344
Q ss_pred EeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC---cHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025 103 IDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD---NVETIRKRFKVFLESSLPVVQYYEAK 177 (215)
Q Consensus 103 idg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (215)
..| .+........+.. .+++|||++|++.+.+|+..+.++|+.. ..+.+.+.+...+....++ |..
T Consensus 76 s~Ggg~~~~~~~~~~l~~-----~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~---Y~~- 146 (169)
T PRK13949 76 STGGGAPCFFDNMELMNA-----SGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPF---YRQ- 146 (169)
T ss_pred EcCCcccCCHHHHHHHHh-----CCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHH---HHh-
Confidence 344 3344444445544 4679999999999999997431133322 2233444444444443443 555
Q ss_pred CcEEEEcC-CCCHHHHHHHHHHh
Q 028025 178 GKVRKIDA-AKPVAEVFDAVKAV 199 (215)
Q Consensus 178 ~~~~~id~-~~~~~e~~~~i~~~ 199 (215)
.+ +++|. +.+++++++.|.+.
T Consensus 147 ad-~~id~~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 147 AK-IIFNADKLEDESQIEQLVQR 168 (169)
T ss_pred CC-EEEECCCCCHHHHHHHHHHh
Confidence 33 45554 56899999988764
No 35
>PLN02924 thymidylate kinase
Probab=99.76 E-value=1.4e-16 Score=117.40 Aligned_cols=171 Identities=22% Similarity=0.307 Sum_probs=101.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHH-HH----------H
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE-VT----------I 86 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~ 86 (215)
.+++++|+|+|++||||||+++.|++.++...+.. ..++. ...+...+..+...+......... .. .
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~ 90 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKR 90 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999996432222 11111 011233444444444332222111 00 1
Q ss_pred HHHHHHHHccCCCeEEEeCCCCC-----------HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHH
Q 028025 87 KLLQKAMEESGNDKFLIDGFPRN-----------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET 155 (215)
Q Consensus 87 ~~~~~~~~~~~~~~~iidg~~~~-----------~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~ 155 (215)
..+..++. .+..||.|.|..+ .+++..+.. ..+.||++|||++|++++.+|...+ +...+.. +
T Consensus 91 ~~I~pal~--~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~-~~~~PDlvi~Ld~~~~~a~~R~~~~--~~~~E~~-~ 164 (220)
T PLN02924 91 SLMERKLK--SGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEV-GLPAPDLVLYLDISPEEAAERGGYG--GERYEKL-E 164 (220)
T ss_pred HHHHHHHH--CCCEEEEccchhHHHHHHHhcCCCHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHhccC--ccccccH-H
Confidence 22333333 2889999987653 233333443 5678999999999999999996533 1111222 2
Q ss_pred HHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025 156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (215)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~ 204 (215)
+.++.... +..+.. ..+.+||++.+++++.++|...+....
T Consensus 165 ~~~rv~~~-------Y~~la~-~~~~vIDa~~sieeV~~~I~~~I~~~l 205 (220)
T PLN02924 165 FQKKVAKR-------FQTLRD-SSWKIIDASQSIEEVEKKIREVVLDTV 205 (220)
T ss_pred HHHHHHHH-------HHHHhh-cCEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 23333222 222222 346788999999999999988876543
No 36
>PRK13974 thymidylate kinase; Provisional
Probab=99.75 E-value=5.6e-17 Score=119.48 Aligned_cols=174 Identities=21% Similarity=0.308 Sum_probs=112.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH--HHHHHHHHHcCCCcHHHHHHHHHcC--CCCCHHHHH----------
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA--GDLLRAEIKSGSENGTMIQNMIKEG--KIVPSEVTI---------- 86 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------- 86 (215)
+.+|+|.|++||||||+++.|++.+....... .+......+.+...+..+.+++... ...++....
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~ 82 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ 82 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999885211100 0000001123455666666665421 122222111
Q ss_pred ---HHHHHHHHccCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCC
Q 028025 87 ---KLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRE 149 (215)
Q Consensus 87 ---~~~~~~~~~~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~ 149 (215)
..+...+. .+..||.|.|..+ .++...+... ....|+++|||++|++++.+|+..| .
T Consensus 83 ~~~~~i~~~l~--~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R--~-- 156 (212)
T PRK13974 83 HVSKIIRPALE--NGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNR--K-- 156 (212)
T ss_pred HHHHHHHHHHH--CCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--c--
Confidence 12222222 2677887765322 2234444332 3457999999999999999999876 2
Q ss_pred CCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
++ .+.++...|+....+.+..|.+.+.+..+|++.++++++++|...+...
T Consensus 157 dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~ 207 (212)
T PRK13974 157 PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNN 207 (212)
T ss_pred cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 22 2445666778888888888888788889999999999999999888653
No 37
>PRK08233 hypothetical protein; Provisional
Probab=99.75 E-value=2.7e-17 Score=118.65 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=95.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP---SEVTIKLLQKAMEE 95 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 95 (215)
++++|+|.|+|||||||+|+.|++.++. .++..|+ ++... .......+...+.... .+.+.+.+......
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR-YDFDN-----CPEDICKWIDKGANYSEWVLTPLIKDIQELIAK 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC-EEccc-----CchhhhhhhhccCChhhhhhHHHHHHHHHHHcC
Confidence 3589999999999999999999999963 3333322 22100 0011222222222221 11122233332222
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (215)
Q Consensus 96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (215)
.....+++|+. ..... ..+ ...+|++|||++|.+++.+|+.+| .......+.+.+++..|....++.+..+.
T Consensus 76 ~~~~~vivd~~-~~~~~-~~~----~~~~d~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 147 (182)
T PRK08233 76 SNVDYIIVDYP-FAYLN-SEM----RQFIDVTIFIDTPLDIAMARRILR--DFKEDTGNEIHNDLKHYLNYARPLYLEAL 147 (182)
T ss_pred CCceEEEEeee-hhhcc-HHH----HHHcCEEEEEcCCHHHHHHHHHHH--HhhhccccchhhHHHHHHHHHHHHHHHHh
Confidence 21245666753 21111 112 224789999999999999998777 21111223455666666665555533221
Q ss_pred h---cCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025 176 A---KGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 176 ~---~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
. ....+++|++.++++++++|...+.
T Consensus 148 ~~~~~~~~~vId~~~~~e~i~~~i~~~l~ 176 (182)
T PRK08233 148 HTVKPNADIVLDGALSVEEIINQIEEELY 176 (182)
T ss_pred hcCccCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 1 1346778998999999999998876
No 38
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.75 E-value=1.2e-16 Score=115.90 Aligned_cols=163 Identities=17% Similarity=0.175 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHH------cCCCCCHHH-----------
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK------EGKIVPSEV----------- 84 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~----------- 84 (215)
++|+|+|++||||||+++.|++.+|+.++++|++.++.+..+.+....+.+.+. +|..+....
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 479999999999999999999988999999999999988777655555544442 120111110
Q ss_pred -------H----HHHHHHHHHccC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025 85 -------T----IKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (215)
Q Consensus 85 -------~----~~~~~~~~~~~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~ 152 (215)
+ ...+...+.... ...+++|.-. ..+ ..+. ..+|.+|+++||.+++.+|+.+| + +.+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pl-l~E--~~~~----~~~D~ii~V~a~~e~r~~Rl~~R--~--g~s 150 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVIPL-LFE--AKLT----DLCSEIWVVDCSPEQQLQRLIKR--D--GLT 150 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHH-hcC--cchH----hCCCEEEEEECCHHHHHHHHHHc--C--CCC
Confidence 1 122222232222 4567777411 111 1222 24788999999999999999988 2 445
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
.+++.+|+.... +... ..... -++|+++++.+++.+++.+++.
T Consensus 151 ~e~~~~ri~~Q~----~~~~-k~~~a-D~vI~N~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 151 EEEAEARINAQW----PLEE-KVKLA-DVVLDNSGDLEKLYQQVDQLLK 193 (195)
T ss_pred HHHHHHHHHhCC----CHHH-HHhhC-CEEEECCCCHHHHHHHHHHHHh
Confidence 677777765422 1111 12222 3577788899999999988764
No 39
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.74 E-value=1.1e-16 Score=111.30 Aligned_cols=165 Identities=19% Similarity=0.280 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
+-|+++|++||||||+.+.||+.+++.+++.|.++..... ....+.+. ..|+..+...-...+.+..... +.++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g--~sI~eIF~---~~GE~~FR~~E~~vl~~l~~~~-~~Vi 76 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG--MSIAEIFE---EEGEEGFRRLETEVLKELLEED-NAVI 76 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC--cCHHHHHH---HHhHHHHHHHHHHHHHHHhhcC-CeEE
Confidence 4699999999999999999999999999999998887632 22222221 2333333344455555555442 2222
Q ss_pred EEeC-CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcE
Q 028025 102 LIDG-FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180 (215)
Q Consensus 102 iidg-~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (215)
-.-| ...+.+.+..+.. . ..+|||++|.+++++|+..+ +.|+--....-.+.+....+...++ |.+.. .
T Consensus 77 aTGGG~v~~~enr~~l~~-~----g~vv~L~~~~e~l~~Rl~~~-~~RPll~~~~~~~~l~~L~~~R~~~---Y~e~a-~ 146 (172)
T COG0703 77 ATGGGAVLSEENRNLLKK-R----GIVVYLDAPFETLYERLQRD-RKRPLLQTEDPREELEELLEERQPL---YREVA-D 146 (172)
T ss_pred ECCCccccCHHHHHHHHh-C----CeEEEEeCCHHHHHHHhccc-cCCCcccCCChHHHHHHHHHHHHHH---HHHhC-c
Confidence 2222 3344555555554 2 26999999999999999843 1222111111122333333333344 44443 4
Q ss_pred EEEcCCCCHHHHHHHHHHhhCC
Q 028025 181 RKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 181 ~~id~~~~~~e~~~~i~~~l~~ 202 (215)
++++++...++++++|.+.+..
T Consensus 147 ~~~~~~~~~~~v~~~i~~~l~~ 168 (172)
T COG0703 147 FIIDTDDRSEEVVEEILEALEG 168 (172)
T ss_pred EEecCCCCcHHHHHHHHHHHHH
Confidence 6666655558999999888764
No 40
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.74 E-value=1.8e-16 Score=113.10 Aligned_cols=172 Identities=21% Similarity=0.306 Sum_probs=100.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc----CCCc--HHHHHHHHHc--------------CCC
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS----GSEN--GTMIQNMIKE--------------GKI 79 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~----~~~~--~~~~~~~~~~--------------~~~ 79 (215)
+.++|.|.||+||||||+|+.||++||+.|+++|.+||..... +... ...+...... +..
T Consensus 3 ~~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~ged 82 (222)
T COG0283 3 AAIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGED 82 (222)
T ss_pred CceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCch
Confidence 3489999999999999999999999999999999999976543 2111 1122221111 111
Q ss_pred CCHHHH-------------HHHHHHHHHc------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHH
Q 028025 80 VPSEVT-------------IKLLQKAMEE------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140 (215)
Q Consensus 80 ~~~~~~-------------~~~~~~~~~~------~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R 140 (215)
....+. ...++..+.. ..+.++|+||.- +-. . -.+..++-|||++++|+..+|
T Consensus 83 vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRD--iGT-----v-V~PdA~lKiFLtAS~e~RA~R 154 (222)
T COG0283 83 VSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRD--IGT-----V-VFPDAELKIFLTASPEERAER 154 (222)
T ss_pred hhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCC--Ccc-----e-ECCCCCeEEEEeCCHHHHHHH
Confidence 111111 1111111111 013668889832 111 0 446778899999999996665
Q ss_pred Hh-hc-cCCCCCCcHHHHHHHHH--HHhhcchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhC
Q 028025 141 IL-NR-NQGREDDNVETIRKRFK--VFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFT 201 (215)
Q Consensus 141 ~~-~r-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~ 201 (215)
.. +. ..+.... .+.+.+.+. ++.+..+.... +......+++|+ +.+++|++++|..++.
T Consensus 155 R~~q~~~~g~~~~-~e~ll~eI~~RD~~D~~R~~~P-Lk~A~DA~~iDTs~msieeVv~~il~~~~ 218 (222)
T COG0283 155 RYKQLQAKGFSEV-FEELLAEIKERDERDSNRAVAP-LKPAEDALLLDTSSLSIEEVVEKILELIR 218 (222)
T ss_pred HHHHHHhccCcch-HHHHHHHHHHhhhccccCcCCC-CcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence 54 43 3332222 444444433 33333333211 233345667766 7899999999999886
No 41
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.74 E-value=1.2e-16 Score=116.09 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-----CCCCHH-------------
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE------------- 83 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------------- 83 (215)
.+|+|+|++||||||+++.|++ +|+.++++|.+.++.+..+.+....+.+.+..+ ..+...
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 5899999999999999999988 999999999999988776655444444333211 111111
Q ss_pred -----HHH----HHHHHHHHccC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028025 84 -----VTI----KLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (215)
Q Consensus 84 -----~~~----~~~~~~~~~~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~ 153 (215)
++. ..+...+.... ...+++|.-.. .+ .. ....+|.+|++++|+++..+|+.+| ...+.
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll-~e--~~----~~~~~D~vi~V~a~~e~~~~Rl~~R----~~~s~ 150 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAESSPYVVLDIPLL-FE--NG----LEKLVDRVLVVDAPPETQLERLMAR----DGLSE 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHh-hc--CC----chhhCCeEEEEECCHHHHHHHHHHc----CCCCH
Confidence 111 12222222222 25778885221 11 11 1234789999999999999999987 23456
Q ss_pred HHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
+.+..|+..... ... ..... .++|+++++++++.+++..+++
T Consensus 151 e~~~~ri~~Q~~----~~~-~~~~a-d~vI~N~g~~e~l~~qv~~i~~ 192 (194)
T PRK00081 151 EEAEAIIASQMP----REE-KLARA-DDVIDNNGDLEELRKQVERLLQ 192 (194)
T ss_pred HHHHHHHHHhCC----HHH-HHHhC-CEEEECCCCHHHHHHHHHHHHH
Confidence 677777765332 111 11222 3677777899999999988774
No 42
>PRK04182 cytidylate kinase; Provisional
Probab=99.74 E-value=4.9e-16 Score=111.84 Aligned_cols=167 Identities=20% Similarity=0.222 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
++|+|+|++||||||+++.|++.+|+.+++.+++++............+...... .......+...+.. +.. .+.++
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~-~~~~~ 77 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEE-DPEIDKEIDRRQLE-IAE-KEDNV 77 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhc-CchHHHHHHHHHHH-HHh-cCCCE
Confidence 4799999999999999999999999999999998888654422222222221111 11111111222221 211 24567
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchh-HHHHHH-----
Q 028025 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP-VVQYYE----- 175 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----- 175 (215)
|++|..... + ....++++|||++|++++.+|+..| .. .......+.+......... ....|.
T Consensus 78 Vi~g~~~~~-----~---~~~~~~~~V~l~a~~e~~~~Rl~~r--~~--~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~ 145 (180)
T PRK04182 78 VLEGRLAGW-----M---AKDYADLKIWLKAPLEVRAERIAER--EG--ISVEEALEETIEREESEAKRYKEYYGIDIDD 145 (180)
T ss_pred EEEEeecce-----E---ecCCCCEEEEEECCHHHHHHHHHhc--cC--CCHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 888742111 1 1122678999999999999999987 21 1122222211111100000 011111
Q ss_pred -hcCcEEEEcC-CCCHHHHHHHHHHhhCCCc
Q 028025 176 -AKGKVRKIDA-AKPVAEVFDAVKAVFTPKD 204 (215)
Q Consensus 176 -~~~~~~~id~-~~~~~e~~~~i~~~l~~~~ 204 (215)
.... +++|+ ..+++++++.|...+....
T Consensus 146 ~~~~d-~~idt~~~~~~~~~~~I~~~~~~~~ 175 (180)
T PRK04182 146 LSIYD-LVINTSRWDPEGVFDIILTAIDKLL 175 (180)
T ss_pred ccccc-EEEECCCCCHHHHHHHHHHHHHHHh
Confidence 1222 55555 6799999999998886543
No 43
>PRK08356 hypothetical protein; Provisional
Probab=99.74 E-value=1.2e-16 Score=116.28 Aligned_cols=169 Identities=20% Similarity=0.267 Sum_probs=100.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcC-CCc----HHHH------HHHHHcCCCCCH----HHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG-SEN----GTMI------QNMIKEGKIVPS----EVT 85 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~-~~~----~~~~------~~~~~~~~~~~~----~~~ 85 (215)
.++|+|+|||||||||+|+.|+ ++|+.+++.++.++...... ... ...+ ..++..+...++ ..+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~ 83 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL 83 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence 4689999999999999999996 58999999988654432221 100 0000 122222222221 333
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC----cHHHHHHHHH
Q 028025 86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD----NVETIRKRFK 161 (215)
Q Consensus 86 ~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~----~~~~~~~~~~ 161 (215)
...+.+.+.. ...+++||+ .+..+...+.. . ...+|||++|.+++.+|+.+| +.... ..+.+.++..
T Consensus 84 ~~~~~~~~~~--~~~ividG~-r~~~q~~~l~~-~---~~~vi~l~~~~~~~~~Rl~~R--~~~~~~~~~~~e~~~~~~~ 154 (195)
T PRK08356 84 IRLAVDKKRN--CKNIAIDGV-RSRGEVEAIKR-M---GGKVIYVEAKPEIRFERLRRR--GAEKDKGIKSFEDFLKFDE 154 (195)
T ss_pred HHHHHHHhcc--CCeEEEcCc-CCHHHHHHHHh-c---CCEEEEEECCHHHHHHHHHhc--CCccccccccHHHHHHHHH
Confidence 3344444422 346999999 88888877775 2 247999999999999999988 32211 2333332221
Q ss_pred HHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 162 VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
.+...... ..+.....++++ ++.+.+++.++|.+++..
T Consensus 155 -~~~~l~~~-~~~~~~aD~vI~-N~~~~e~~~~~i~~~~~~ 192 (195)
T PRK08356 155 -WEEKLYHT-TKLKDKADFVIV-NEGTLEELRKKVEEILRE 192 (195)
T ss_pred -HHHHhhhh-hhHHHhCcEEEE-CCCCHHHHHHHHHHHHHH
Confidence 11111011 112233444554 457999999999988753
No 44
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.74 E-value=2.7e-16 Score=112.65 Aligned_cols=171 Identities=21% Similarity=0.323 Sum_probs=95.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
|.+++.|+|+|+|||||||+|+.|++.+++.+++.|++++... +....+.+. ..+...........+......
T Consensus 1 ~~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~--g~~~~~~~~---~~g~~~~~~~~~~~~~~l~~~-- 73 (175)
T PRK00131 1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA--GKSIPEIFE---EEGEAAFRELEEEVLAELLAR-- 73 (175)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc--CCCHHHHHH---HHCHHHHHHHHHHHHHHHHhc--
Confidence 3567899999999999999999999999999999988776542 222222111 111111112223334433332
Q ss_pred CCeEEEeCC--CCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025 98 NDKFLIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (215)
Q Consensus 98 ~~~~iidg~--~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (215)
...++..|. .........+. ....+|||.+|.+.+.+|+.+|.. ++........+.+..+.....+. |.
T Consensus 74 ~~~vi~~g~~~~~~~~~r~~l~-----~~~~~v~l~~~~~~~~~R~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~---~~ 144 (175)
T PRK00131 74 HNLVISTGGGAVLREENRALLR-----ERGTVVYLDASFEELLRRLRRDRN-RPLLQTNDPKEKLRDLYEERDPL---YE 144 (175)
T ss_pred CCCEEEeCCCEeecHHHHHHHH-----hCCEEEEEECCHHHHHHHhcCCCC-CCcCCCCChHHHHHHHHHHHHHH---HH
Confidence 223444331 11122222221 234789999999999999987721 11111111122222222222222 33
Q ss_pred hcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025 176 AKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (215)
Q Consensus 176 ~~~~~~~id~~~~~~e~~~~i~~~l~~~~ 204 (215)
....+++..++.+++++++.|.+.+....
T Consensus 145 ~~~dl~idt~~~~~~e~~~~I~~~v~~~~ 173 (175)
T PRK00131 145 EVADITVETDGRSPEEVVNEILEKLEAAW 173 (175)
T ss_pred hhcCeEEeCCCCCHHHHHHHHHHHHHhhc
Confidence 32334444458899999999999887544
No 45
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.73 E-value=1.5e-15 Score=108.33 Aligned_cols=163 Identities=16% Similarity=0.173 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
++|+|+|++||||||+|+.|++.+|+.+++.|++++............+.........+ ...+...+..... .+..+
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~--~~~~~ 77 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEI-DKKIDRRIHEIAL--KEKNV 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHH-HHHHHHHHHHHHh--cCCCE
Confidence 47999999999999999999999999999999988876543221112222221111111 1111222222211 25678
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchh-HHHHHHh----
Q 028025 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP-VVQYYEA---- 176 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---- 176 (215)
|+||..... . ....+++.|||.+|++++.+|+.+| + ..+.+...+++..-...... ...+|..
T Consensus 78 Vi~g~~~~~------~--~~~~~d~~v~v~a~~~~r~~R~~~R--~--~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~ 145 (171)
T TIGR02173 78 VLESRLAGW------I--VREYADVKIWLKAPLEVRARRIAKR--E--GKSLTVARSETIEREESEKRRYLKFYGIDIDD 145 (171)
T ss_pred EEEecccce------e--ecCCcCEEEEEECCHHHHHHHHHHc--c--CCCHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 889854211 1 1234678999999999999999987 2 22333333333221111111 1111211
Q ss_pred -cCcEEEEcC-CCCHHHHHHHHHHhh
Q 028025 177 -KGKVRKIDA-AKPVAEVFDAVKAVF 200 (215)
Q Consensus 177 -~~~~~~id~-~~~~~e~~~~i~~~l 200 (215)
...-+++|+ ..++++ ++.|...+
T Consensus 146 ~~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 146 LSIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred cccccEEEECCCCCHHH-HHHHHHHh
Confidence 123356666 679999 99998765
No 46
>PRK13948 shikimate kinase; Provisional
Probab=99.73 E-value=3.7e-16 Score=111.67 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=96.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCC
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (215)
..+..|+++|++||||||+++.|++.+++.+++.|.++.+... ....+.+. ..|+....+.....++..+.. .
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g--~si~~if~---~~Ge~~fR~~E~~~l~~l~~~--~ 80 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG--KSIPEIFR---HLGEAYFRRCEAEVVRRLTRL--D 80 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh--CCHHHHHH---HhCHHHHHHHHHHHHHHHHhc--C
Confidence 4568899999999999999999999999999999887766532 12222221 223323333334444444432 2
Q ss_pred CeEEEe--CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025 99 DKFLID--GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (215)
Q Consensus 99 ~~~iid--g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (215)
..+|.= |.+........+.+ ...+|||+++++++.+|+..+ .++-.......+++...+....++ |..
T Consensus 81 ~~VIa~GgG~v~~~~n~~~l~~-----~g~vV~L~~~~e~l~~Rl~~~--~RPll~~~~~~~~l~~l~~~R~~~---Y~~ 150 (182)
T PRK13948 81 YAVISLGGGTFMHEENRRKLLS-----RGPVVVLWASPETIYERTRPG--DRPLLQVEDPLGRIRTLLNEREPV---YRQ 150 (182)
T ss_pred CeEEECCCcEEcCHHHHHHHHc-----CCeEEEEECCHHHHHHHhcCC--CCCCCCCCChHHHHHHHHHHHHHH---HHh
Confidence 223321 23333333344433 245899999999999999544 332221111122333333333333 443
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 177 KGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 177 ~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
..+.+..++.++++++++|...+..
T Consensus 151 -a~~~i~t~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 151 -ATIHVSTDGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred -CCEEEECCCCCHHHHHHHHHHHHHH
Confidence 3333333467999999999888854
No 47
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.73 E-value=1.7e-15 Score=111.34 Aligned_cols=168 Identities=18% Similarity=0.266 Sum_probs=95.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC---eEeeHHHHHHHHHHcCCCcHHHHHHHHHc--CCCCCHHHH---------
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKE--GKIVPSEVT--------- 85 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------- 85 (215)
++++|+|+|++||||||+++.|++.++. .++.. +. +.+...++.+...+.. ....+....
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~----~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 75 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT----RE--PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ 75 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe----eC--CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999998732 11111 00 1112233333333331 111111110
Q ss_pred --HHHHHHHHHccCCCeEEEeCCCCCH------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCC
Q 028025 86 --IKLLQKAMEESGNDKFLIDGFPRNE------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRE 149 (215)
Q Consensus 86 --~~~~~~~~~~~~~~~~iidg~~~~~------------~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~ 149 (215)
...+...+. .+..+|+|.++.+. .+...+... ..+.||++|||++|++++.+|+.+| +..
T Consensus 76 ~~~~~i~~~l~--~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R--~~~ 151 (205)
T PRK00698 76 HLEEVIKPALA--RGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRAR--GEL 151 (205)
T ss_pred HHHHHHHHHHH--CCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--CCc
Confidence 111222222 27899999655331 222232221 2367999999999999999999988 321
Q ss_pred C---CcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 150 D---DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 150 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
. .....+.+++...+. .+.. .....++++|++.+++++.++|.+.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~y~---~~~~--~~~~~~~~Id~~~~~e~v~~~i~~~i~~ 202 (205)
T PRK00698 152 DRIEQEGLDFFERVREGYL---ELAE--KEPERIVVIDASQSLEEVHEDILAVIKA 202 (205)
T ss_pred chhhhhhHHHHHHHHHHHH---HHHH--hCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 111233334332221 1111 1223578899999999999999888754
No 48
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.72 E-value=2e-15 Score=110.37 Aligned_cols=167 Identities=19% Similarity=0.308 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC---CCCHHHH-------HHH
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK---IVPSEVT-------IKL 88 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~ 88 (215)
++|+|+|++||||||+++.|++.+ |+.++.... +.....+..+..++.... ..+.... ...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 579999999999999999999999 554443311 001112222333222211 1111000 111
Q ss_pred HHHHHH--ccCCCeEEEeCCCCCH------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCC-
Q 028025 89 LQKAME--ESGNDKFLIDGFPRNE------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDD- 151 (215)
Q Consensus 89 ~~~~~~--~~~~~~~iidg~~~~~------------~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~- 151 (215)
+.+.+. ...+..+|+|.++..- .+...+... ....|+.+|||+++++++.+|+.+| +....
T Consensus 75 ~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~ 152 (200)
T cd01672 75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEAR--GRDDRD 152 (200)
T ss_pred HHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--CCcchh
Confidence 111111 1238899999655331 122222221 3457999999999999999999988 33221
Q ss_pred --cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025 152 --NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
....+.+++...+. .+...+ ...++++|++.++++++++|...+.
T Consensus 153 ~~~~~~~~~~~~~~y~---~~~~~~--~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 153 EQEGLEFHERVREGYL---ELAAQE--PERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred hhhhHHHHHHHHHHHH---HHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 12233333322211 111111 1357899999999999999988774
No 49
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.72 E-value=8.8e-16 Score=111.95 Aligned_cols=166 Identities=16% Similarity=0.244 Sum_probs=87.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC---eEee--------HHHHHHHHHHcCC--CcHHHHHHHHHcCCCCCHHHHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGY---THLS--------AGDLLRAEIKSGS--ENGTMIQNMIKEGKIVPSEVTIK 87 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~---~~i~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 87 (215)
+++|+|+|++||||||+++.|++.++. .++. .++.++..+.... .........+.... .......
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~--r~~~~~~ 80 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAAD--RHEHLED 80 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHH--HHHHHHH
Confidence 578999999999999999999999953 2321 2233333321110 00000000000000 0001112
Q ss_pred HHHHHHHccCCCeEEEeCCCCCH------------HHHHHHHHhcCC--CCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028025 88 LLQKAMEESGNDKFLIDGFPRNE------------ENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (215)
Q Consensus 88 ~~~~~~~~~~~~~~iidg~~~~~------------~~~~~~~~~~~~--~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~ 153 (215)
.+...+. .+..+|+|.+..+- .+...+.. ... .|+++|||++|++++.+|+..| +... .
T Consensus 81 ~i~~~l~--~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~-~~~~~~~d~~i~l~~~~~~~~~R~~~r--~~~~--~ 153 (195)
T TIGR00041 81 KIKPALA--EGKLVISDRYVFSSIAYQGGARGIDEDLVLELNE-DALGDMPDLTIYLDIDPEVALERLRKR--GELD--R 153 (195)
T ss_pred HHHHHHh--CCCEEEECCcccHHHHHccccCCCCHHHHHHHHH-HhhCCCCCEEEEEeCCHHHHHHHHHhc--CCcc--h
Confidence 2233332 26789999654221 22233333 223 3999999999999999999988 3211 1
Q ss_pred HHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHH
Q 028025 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196 (215)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i 196 (215)
+.. .....+........+.+.....+.++|++.+++++..+|
T Consensus 154 ~~~-~~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 154 EEF-EKLDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred HHH-HHHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence 111 111111111111122233244688999999999998764
No 50
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.71 E-value=6.8e-16 Score=106.34 Aligned_cols=154 Identities=18% Similarity=0.299 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
|.|+|+|.||+||||+|+.|+ .+|+.+++..++..+.- -.....+.. ....+..+.....++..+ .....
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~-~~~~~de~r-----~s~~vD~d~~~~~le~~~---~~~~~ 70 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENG-LYTEYDELR-----KSVIVDVDKLRKRLEELL---REGSG 70 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcC-CeeccCCcc-----ceEEeeHHHHHHHHHHHh---ccCCe
Confidence 579999999999999999998 99999998877766530 000000000 001111222233333333 25678
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHH-HhhcchhHHHHHHhcCcE
Q 028025 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV-FLESSLPVVQYYEAKGKV 180 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 180 (215)
|+|++. .. ..+.+|++|.|.++++.+.+|+.+| |-+.+ .+.+.+.. ..... +.+..+....+
T Consensus 71 Ivd~H~-----~h-----l~~~~dlVvVLR~~p~~L~~RLk~R--Gy~~e---KI~ENveAEi~~vi--~~EA~E~~~~v 133 (180)
T COG1936 71 IVDSHL-----SH-----LLPDCDLVVVLRADPEVLYERLKGR--GYSEE---KILENVEAEILDVI--LIEAVERFEAV 133 (180)
T ss_pred Eeechh-----hh-----cCCCCCEEEEEcCCHHHHHHHHHHc--CCCHH---HHHHHHHHHHHHHH--HHHHHHhcCce
Confidence 889753 11 2224899999999999999999999 54432 22222221 11110 11222333567
Q ss_pred EEEcC-CCCHHHHHHHHHHhhCC
Q 028025 181 RKIDA-AKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 181 ~~id~-~~~~~e~~~~i~~~l~~ 202 (215)
..+|. +.+++++++.|...+..
T Consensus 134 ~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 134 IEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred EEEECCCCCHHHHHHHHHHHHcc
Confidence 88887 77999999999999984
No 51
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.71 E-value=2.1e-16 Score=112.52 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
.-++|+|.|+.|+||||||+.||++++..++.
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~ 34 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVFY 34 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCCceee
Confidence 35789999999999999999999999965543
No 52
>PRK13946 shikimate kinase; Provisional
Probab=99.71 E-value=1.8e-15 Score=109.17 Aligned_cols=166 Identities=20% Similarity=0.267 Sum_probs=98.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (215)
.++.|+++|++||||||+++.|++.+|+.+++.|....... +....+.+.. .+...........+...... +.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~~--~~ 81 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLKG--GP 81 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhc--CC
Confidence 45689999999999999999999999999999987655542 2222222211 11111122223344443322 44
Q ss_pred eEEEeCC--CCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCC----CCcHHHHHHHHHHHhhcchhHHHH
Q 028025 100 KFLIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRE----DDNVETIRKRFKVFLESSLPVVQY 173 (215)
Q Consensus 100 ~~iidg~--~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 173 (215)
.||..|. +........+.. -.+.|||++|++++.+|+..|. +++ ....+.+.+. .....++
T Consensus 82 ~Vi~~ggg~~~~~~~r~~l~~-----~~~~v~L~a~~e~~~~Rl~~r~-~rp~~~~~~~~~~i~~~----~~~R~~~--- 148 (184)
T PRK13946 82 LVLATGGGAFMNEETRAAIAE-----KGISVWLKADLDVLWERVSRRD-TRPLLRTADPKETLARL----MEERYPV--- 148 (184)
T ss_pred eEEECCCCCcCCHHHHHHHHc-----CCEEEEEECCHHHHHHHhcCCC-CCCcCCCCChHHHHHHH----HHHHHHH---
Confidence 5555542 233333333332 3478999999999999998871 111 1222222222 2222222
Q ss_pred HHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025 174 YEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK 206 (215)
Q Consensus 174 ~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~ 206 (215)
|.. .++.+.++..+++++++.|...+.....+
T Consensus 149 y~~-~dl~i~~~~~~~~~~~~~i~~~i~~~~~~ 180 (184)
T PRK13946 149 YAE-ADLTVASRDVPKEVMADEVIEALAAYLEK 180 (184)
T ss_pred HHh-CCEEEECCCCCHHHHHHHHHHHHHHhhcc
Confidence 443 34556666889999999999988765544
No 53
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.71 E-value=1.4e-15 Score=110.72 Aligned_cols=166 Identities=15% Similarity=0.168 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCC-----HHH------------
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP-----SEV------------ 84 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------------ 84 (215)
++|+|+|++||||||+++.|++ +|+.+++.|++.++.+..+......+.+.+..+...+ ...
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 4799999999999999999987 8999999999999888877655555555443322211 000
Q ss_pred ----------HHHHHHHHHHcc--C-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028025 85 ----------TIKLLQKAMEES--G-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (215)
Q Consensus 85 ----------~~~~~~~~~~~~--~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~ 151 (215)
+...+.+.+... . ...++++.-. ..+. . ....+|.+||+++|+++..+|+.+| .+.
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~pl-L~e~--g----~~~~~D~vi~V~a~~e~ri~Rl~~R----~g~ 149 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPL-LVEK--G----LDRKMDLVVVVDVDVEERVRRLVEK----RGL 149 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeec-eeEc--C----ccccCCeEEEEECCHHHHHHHHHHc----CCC
Confidence 011122222111 1 2455555311 1110 1 1235789999999999999999987 234
Q ss_pred cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
+.+.+.+|+..+... .. ..... .++|+++++++++.+++..+++....
T Consensus 150 s~e~~~~ri~~Q~~~----~~-k~~~a-d~vI~N~g~~e~l~~~v~~~~~~~~~ 197 (200)
T PRK14734 150 DEDDARRRIAAQIPD----DV-RLKAA-DIVVDNNGTREQLLAQVDGLIAEILS 197 (200)
T ss_pred CHHHHHHHHHhcCCH----HH-HHHhC-CEEEECcCCHHHHHHHHHHHHHHHHh
Confidence 567777777765442 11 11222 36788888999999999988765543
No 54
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.71 E-value=1.9e-15 Score=107.01 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=91.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHH----HHcCCCcHH-HHHHHHHcCCCCCHHHHHHHHHHHHHccCC
Q 028025 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (215)
Q Consensus 24 I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (215)
|+|.|++||||||+++.|++.++..+++.|++.... ...+..... ....+ .....+.+...+.. +
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~--~ 70 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPW--------LQNLNDASTAAAAK--N 70 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHH--------HHHHHHHHHHHHhc--C
Confidence 578999999999999999999999999998864221 111111110 00000 00112222223322 3
Q ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcC
Q 028025 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG 178 (215)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (215)
..+|+|...........+.. .. ....++||++|.+++.+|+..| +......+.+..++..+.. +. ....
T Consensus 71 ~~~Vi~~t~~~~~~r~~~~~-~~-~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~~---~~----~~e~ 139 (163)
T TIGR01313 71 KVGIITCSALKRHYRDILRE-AE-PNLHFIYLSGDKDVILERMKAR--KGHFMKADMLESQFAALEE---PL----ADET 139 (163)
T ss_pred CCEEEEecccHHHHHHHHHh-cC-CCEEEEEEeCCHHHHHHHHHhc--cCCCCCHHHHHHHHHHhCC---CC----CCCC
Confidence 34455543333333333333 22 2334799999999999999988 3322234455555443321 11 1113
Q ss_pred cEEEEcCCCCHHHHHHHHHHhh
Q 028025 179 KVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 179 ~~~~id~~~~~~e~~~~i~~~l 200 (215)
.++++|++.+++++.++|...+
T Consensus 140 ~~~~id~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 140 DVLRVDIDQPLEGVEEDCIAVV 161 (163)
T ss_pred ceEEEECCCCHHHHHHHHHHHH
Confidence 5799999999999999988765
No 55
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.71 E-value=2.6e-15 Score=108.89 Aligned_cols=168 Identities=17% Similarity=0.138 Sum_probs=103.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHH-----HcCCCCCHH----------
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-----KEGKIVPSE---------- 83 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---------- 83 (215)
..|+.|+|+|.+||||||+++.|++.+|+.+++.|.+.++.+.. ......+.+.+ .++ .+...
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g-~idR~~L~~~vF~d~ 81 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNK-QINRAMLRAIITESK 81 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCC-CcCHHHHHHHHhCCH
Confidence 45789999999999999999999999999999999988887654 22212222111 111 11111
Q ss_pred ------------HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028025 84 ------------VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (215)
Q Consensus 84 ------------~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~ 151 (215)
.+...+.+.+.......+++|. |...+. .+. ....+|.+|++.||+++..+|+.+| ...
T Consensus 82 ~~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei-pLL~E~--~~~--~~~~~D~vi~V~a~~e~ri~Rl~~R----d~~ 152 (204)
T PRK14733 82 EAKKWLEDYLHPVINKEIKKQVKESDTVMTIVDI-PLLGPY--NFR--HYDYLKKVIVIKADLETRIRRLMER----DGK 152 (204)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe-chhhhc--cCc--hhhhCCEEEEEECCHHHHHHHHHHc----CCC
Confidence 1122222333322234677774 111111 100 0124788999999999999999987 344
Q ss_pred cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCC-CHHHHHHHHHHhhCCC
Q 028025 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAK-PVAEVFDAVKAVFTPK 203 (215)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~e~~~~i~~~l~~~ 203 (215)
+.+.+.+|+..-... .+ ..... -++|++++ +.+++..++.+.+..+
T Consensus 153 s~~~a~~ri~~Q~~~----ee-k~~~a-D~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 153 NRQQAVAFINLQISD----KE-REKIA-DFVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred CHHHHHHHHHhCCCH----HH-HHHhC-CEEEECcCCCHHHHHHHHHHHHHHH
Confidence 567777776543221 11 12222 26777777 9999999998877654
No 56
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.70 E-value=2.2e-15 Score=111.60 Aligned_cols=172 Identities=15% Similarity=0.242 Sum_probs=92.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHH-HHHHHHH-HcCCCcHH------HHHHHHHcCC---CCCHHHHH-----
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAG-DLLRAEI-KSGSENGT------MIQNMIKEGK---IVPSEVTI----- 86 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~-~~~~~~~-~~~~~~~~------~~~~~~~~~~---~~~~~~~~----- 86 (215)
+|+|.|+.||||||+++.|+++++..++... ....... +.+...++ .+..+..+.. ........
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 5899999999999999999999987655332 1111000 01111111 1222332222 12211111
Q ss_pred --HHHHHHHH--ccCCCeEEEeCCCCCH------------------HHHHHHHHh---cCCCCcEEEEEecCHHHHHHHH
Q 028025 87 --KLLQKAME--ESGNDKFLIDGFPRNE------------------ENRAAFEAV---TKIEPEFVLFFDCSEEEMERRI 141 (215)
Q Consensus 87 --~~~~~~~~--~~~~~~~iidg~~~~~------------------~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~ 141 (215)
+.+...+. ...+..+|+|++..+. .+...+... ..+.||++|||++|++.+.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 11111111 0126789999874331 111111110 2368999999999999999999
Q ss_pred hhccCCCCCC--cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCC--CCHHHHHHHHHH
Q 028025 142 LNRNQGREDD--NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAA--KPVAEVFDAVKA 198 (215)
Q Consensus 142 ~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~e~~~~i~~ 198 (215)
.+| ++..+ ...+..++++..+..+- ...|.....++++|++ .++++++++|..
T Consensus 161 ~~R--~~~~e~~~~~~yl~~l~~~y~~~~--~~~~~~~~~~i~id~~~~~~~e~i~~~I~~ 217 (219)
T cd02030 161 KKR--GDPHEMKVTSAYLQDIENAYKKTF--LPEISEHSEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred HHc--CCchhhcccHHHHHHHHHHHHHHH--HHhhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence 988 43221 22233334443332110 1113345578999987 788888877654
No 57
>PRK08118 topology modulation protein; Reviewed
Probab=99.70 E-value=5e-16 Score=110.02 Aligned_cols=98 Identities=20% Similarity=0.307 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
+.|+|+|+|||||||+|+.|++.+++.+++.|+++... + ....+.+....++...+. ...+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~---~-------------w~~~~~~~~~~~~~~~~~---~~~w 62 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP---N-------------WEGVPKEEQITVQNELVK---EDEW 62 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc---C-------------CcCCCHHHHHHHHHHHhc---CCCE
Confidence 46999999999999999999999999999998876531 0 022233333444444443 4579
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
|+||.+.... .. ....+|.+|||++|.+++..|+.+|
T Consensus 63 VidG~~~~~~-----~~-~l~~~d~vi~Ld~p~~~~~~R~~~R 99 (167)
T PRK08118 63 IIDGNYGGTM-----DI-RLNAADTIIFLDIPRTICLYRAFKR 99 (167)
T ss_pred EEeCCcchHH-----HH-HHHhCCEEEEEeCCHHHHHHHHHHH
Confidence 9999643211 11 2235899999999999999999888
No 58
>PRK13947 shikimate kinase; Provisional
Probab=99.70 E-value=1.6e-15 Score=108.35 Aligned_cols=162 Identities=16% Similarity=0.254 Sum_probs=91.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEE
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (215)
.|+|.|+|||||||+++.||+.+|+.+++.|.+++... +....+.+.. .+..........+++. +... ...++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g~~~~~~~~~---~ge~~~~~~e~~~~~~-l~~~-~~~vi 75 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--GMTVAEIFEK---DGEVRFRSEEKLLVKK-LARL-KNLVI 75 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--CCcHHHHHHH---hChHHHHHHHHHHHHH-Hhhc-CCeEE
Confidence 49999999999999999999999999999988776652 2222221111 1111111121223332 2221 23333
Q ss_pred EeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcE
Q 028025 103 IDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180 (215)
Q Consensus 103 idg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (215)
--| ++........+.+ .+.+|||+++++.+.+|+..| ..++........+++........+ +|. ...+
T Consensus 76 ~~g~g~vl~~~~~~~l~~-----~~~vv~L~~~~~~l~~Rl~~r-~~rp~~~~~~~~~~i~~~~~~r~~---~y~-~ad~ 145 (171)
T PRK13947 76 ATGGGVVLNPENVVQLRK-----NGVVICLKARPEVILRRVGKK-KSRPLLMVGDPEERIKELLKEREP---FYD-FADY 145 (171)
T ss_pred ECCCCCcCCHHHHHHHHh-----CCEEEEEECCHHHHHHHhcCC-CCCCCCCCCChHHHHHHHHHHHHH---HHH-hcCE
Confidence 222 2333334444433 246999999999999999876 122211112222333322222222 233 2234
Q ss_pred EEEcCCCCHHHHHHHHHH-hhC
Q 028025 181 RKIDAAKPVAEVFDAVKA-VFT 201 (215)
Q Consensus 181 ~~id~~~~~~e~~~~i~~-~l~ 201 (215)
++.+++.+++++++.|.. ++.
T Consensus 146 ~Idt~~~~~~~i~~~I~~~~~~ 167 (171)
T PRK13947 146 TIDTGDMTIDEVAEEIIKAYLK 167 (171)
T ss_pred EEECCCCCHHHHHHHHHHHHHh
Confidence 555568899999999988 554
No 59
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.69 E-value=4.9e-15 Score=105.75 Aligned_cols=164 Identities=18% Similarity=0.281 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
..|+|+|++||||||+++.|++.+|+.+++.|.+..... +....+.+. ..+..........++. .+.. ...+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~--g~~~~~~~~---~~g~~~~~~~e~~~~~-~~~~--~~~v 74 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS--NMTVAEIVE---REGWAGFRARESAALE-AVTA--PSTV 74 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh--CCCHHHHHH---HHCHHHHHHHHHHHHH-HhcC--CCeE
Confidence 458899999999999999999999999999988776542 222222111 1111111111123332 2221 2333
Q ss_pred EEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025 102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN--QGREDDNVETIRKRFKVFLESSLPVVQYYEAK 177 (215)
Q Consensus 102 iidg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (215)
|.-| +.........+.. .+++|||++|++++.+|+..|. ..++..........+..+.+... ..|...
T Consensus 75 i~~ggg~vl~~~~~~~l~~-----~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~---~~y~~~ 146 (171)
T PRK03731 75 IATGGGIILTEENRHFMRN-----NGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAERE---ALYREV 146 (171)
T ss_pred EECCCCccCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHH---HHHHHh
Confidence 3333 2222333333332 5579999999999999998761 11221111111122222222212 223332
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 178 GKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 178 ~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
. .+++|++.++++++++|...+..
T Consensus 147 a-~~~Id~~~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 147 A-HHIIDATQPPSQVVSEILSALAQ 170 (171)
T ss_pred C-CEEEcCCCCHHHHHHHHHHHHhc
Confidence 2 37888889999999999988753
No 60
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.69 E-value=1.4e-15 Score=111.57 Aligned_cols=167 Identities=20% Similarity=0.273 Sum_probs=102.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHH----H--c--CC-CCCHHH-----
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI----K--E--GK-IVPSEV----- 84 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~--~--~~-~~~~~~----- 84 (215)
..+++|+|+|++||||||+++.|++ +|+.++++|.+.++....+......+...+ . . +. .+....
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 3468899999999999999999986 899999998887776544332222222111 0 0 11 011111
Q ss_pred -----------------HHHHHHHHHHcc---CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 85 -----------------TIKLLQKAMEES---GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 85 -----------------~~~~~~~~~~~~---~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
....+.+.+... +...+++|+- ...+. . ....+|.+|++.+|++++.+|+.+|
T Consensus 82 f~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~p-LL~e~--~----~~~~~d~ii~V~a~~e~~~~Rl~~R 154 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAA-ILFES--G----GDAGLDFIVVVAADTELRLERAVQR 154 (208)
T ss_pred hCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEee-eeeec--C----chhcCCeEEEEECCHHHHHHHHHHc
Confidence 011222222211 1246666652 11111 1 1234789999999999999999988
Q ss_pred cCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025 145 NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
+. ...+.+.+|+.......... ... .++|+++++.+++.+++.++++..
T Consensus 155 --~~--~s~e~~~~Ri~~q~~~~~~~-----~~a-d~vI~N~g~~e~l~~~i~~~~~~~ 203 (208)
T PRK14731 155 --GM--GSREEIRRRIAAQWPQEKLI-----ERA-DYVIYNNGTLDELKAQTEQLYQVL 203 (208)
T ss_pred --CC--CCHHHHHHHHHHcCChHHHH-----HhC-CEEEECCCCHHHHHHHHHHHHHHH
Confidence 43 35678888887644432221 222 356777889999999999887543
No 61
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.69 E-value=5.5e-15 Score=100.98 Aligned_cols=172 Identities=17% Similarity=0.266 Sum_probs=109.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHHHHHc--CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKS--GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
+++++++|.||+||||+++.+.+.+ .+.+++.|+++.+.... .....+.+ ..+|.+.+..+...+.....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~-------Rklp~e~Q~~lq~~Aa~rI~ 76 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEM-------RKLPLENQRELQAEAAKRIA 76 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHH-------hcCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999 88899999998776544 23333322 34555555554444333222
Q ss_pred --CCeEEEeCCCCCH------HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHhhcch
Q 028025 98 --NDKFLIDGFPRNE------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSL 168 (215)
Q Consensus 98 --~~~~iidg~~~~~------~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~~~ 168 (215)
..-+|+|++.... ...-.|-- ....||.++.|+++++....|..+. .+.+..++.+++..+++.-+...-
T Consensus 77 ~~~~~iivDtH~~IkTP~GylpgLP~~Vl-~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~ 155 (189)
T COG2019 77 EMALEIIVDTHATIKTPAGYLPGLPSWVL-EELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAM 155 (189)
T ss_pred HhhhceEEeccceecCCCccCCCCcHHHH-HhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHH
Confidence 3338889643211 11111111 3467999999999999977776665 556777777777766544332211
Q ss_pred hHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025 169 PVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 169 ~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~~ 202 (215)
. ........+.++.+ ++.+++..+.|...|..
T Consensus 156 a--~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 156 A--YAILLGATVKIVENHEGDPEEAAEEIVELLDR 188 (189)
T ss_pred H--HHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 1 11112234555555 67899999999888753
No 62
>PRK07933 thymidylate kinase; Validated
Probab=99.69 E-value=4.7e-15 Score=109.10 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC---CeEee----------HHHHHHHHHHcCCC---cHHHHHHHHHcCCCCCHHHH
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFG---YTHLS----------AGDLLRAEIKSGSE---NGTMIQNMIKEGKIVPSEVT 85 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~---~~~i~----------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 85 (215)
++|+|+|+.||||||+++.|++.+. ..++- .++.++..+..... ........+-..... +.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~--~~- 77 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRA--GA- 77 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhh--hh-
Confidence 5899999999999999999999994 22221 13445554443110 011111111111110 00
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCHH-----------------HHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccC
Q 028025 86 IKLLQKAMEESGNDKFLIDGFPRNEE-----------------NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQ 146 (215)
Q Consensus 86 ~~~~~~~~~~~~~~~~iidg~~~~~~-----------------~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~ 146 (215)
...+..++.. +..||.|+|..+-- +...+... ..+.||++|||++|++++.+|+.+|
T Consensus 78 ~~~I~p~l~~--g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R-- 153 (213)
T PRK07933 78 RDELAGLLAA--HDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRR-- 153 (213)
T ss_pred HHHHHHHHhC--CCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhh--
Confidence 1223334332 78999998764421 11112110 2247999999999999999999988
Q ss_pred CCCC--CcHHHHHHHHHHHhhcchhHHHH-HHh--cCcEEEEcCCCCHHHHHHHHHHhh
Q 028025 147 GRED--DNVETIRKRFKVFLESSLPVVQY-YEA--KGKVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 147 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~id~~~~~~e~~~~i~~~l 200 (215)
++.. ...+.+++ -..|....+..+.. ... +..++++|++.+++++.++|.+.+
T Consensus 154 ~~~~~~~~~d~~E~-~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 154 AAQDADRARDAYER-DDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred ccccCCcccccccc-cHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence 3210 00000000 01122222222211 121 336788999999999999998765
No 63
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.68 E-value=4.2e-15 Score=105.89 Aligned_cols=164 Identities=16% Similarity=0.249 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (215)
+...|+|.|++||||||+++.|++.+++.+++.|..+.... +....+.+.. .+.........+.+.... .. +.
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~--g~~i~~~~~~---~g~~~fr~~e~~~l~~l~-~~-~~ 75 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADIGWVFDV---EGEEGFRDREEKVINELT-EK-QG 75 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh--CcCHhHHHHH---hCHHHHHHHHHHHHHHHH-hC-CC
Confidence 45679999999999999999999999999999987655432 2222222111 111111111233444422 21 23
Q ss_pred eEEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCC-CCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025 100 KFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGRE-DDNVETIRKRFKVFLESSLPVVQYYE 175 (215)
Q Consensus 100 ~~iidg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (215)
.++.-| .+........+.. .+.+|||++|.+++.+|+..+ .++-. ...... .+........++ |.
T Consensus 76 ~vi~~ggg~v~~~~~~~~l~~-----~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~---~~~~l~~~R~~~---Y~ 144 (172)
T PRK05057 76 IVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDKKRPLLQVDDPRE---VLEALANERNPL---YE 144 (172)
T ss_pred EEEEcCCchhCCHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHH---HHHHHHHHHHHH---HH
Confidence 333222 2222233333333 357999999999999999765 22111 111222 233333333444 44
Q ss_pred hcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025 176 AKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 176 ~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
....+.+..+..+++++++.|.+.+.
T Consensus 145 ~~Ad~~idt~~~s~~ei~~~i~~~l~ 170 (172)
T PRK05057 145 EIADVTIRTDDQSAKVVANQIIHMLE 170 (172)
T ss_pred hhCCEEEECCCCCHHHHHHHHHHHHh
Confidence 43434443346799999999988775
No 64
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.68 E-value=1.6e-14 Score=104.61 Aligned_cols=173 Identities=13% Similarity=0.215 Sum_probs=102.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcH-HHHHHHHHc----CCCCCHHHH---------
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG-TMIQNMIKE----GKIVPSEVT--------- 85 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~--------- 85 (215)
.+++|+|+|+|||||||+|+.|++++++.++..+|++|+.+....... ....+.+.. +........
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999877533221 000110000 111111111
Q ss_pred -----HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccC-CCCCCcHHHHHH
Q 028025 86 -----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQ-GREDDNVETIRK 158 (215)
Q Consensus 86 -----~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~-~~~~~~~~~~~~ 158 (215)
..++...+. .|..+|+|+............. . . ..++++.+ +++++.+|+..|.. .......+.+.+
T Consensus 82 v~~~L~~va~~~l~--~G~sVIvEgv~l~p~~~~~~~~-~--~-v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~ 155 (197)
T PRK12339 82 IMPGINRVIRRALL--NGEDLVIESLYFHPPMIDENRT-N--N-IRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAE 155 (197)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEecCcCHHHHHHHHh-c--C-eEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHH
Confidence 122222332 2899999986554444432222 1 2 24566654 67888899999821 112233444555
Q ss_pred HHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhh
Q 028025 159 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l 200 (215)
.+...+....-+.+..++. ++-++++. ++++.++.+...+
T Consensus 156 ~~~~ir~i~~~l~~~a~~~-~i~~i~~~-~~~~~~~~~~~~~ 195 (197)
T PRK12339 156 HLPEYRTIMDYSIADARGY-NIKVIDTD-NYREARNPLLDPI 195 (197)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCeecCc-cHHHHHHHHHHHh
Confidence 5555554444444443333 46677664 8888888776654
No 65
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.67 E-value=5.6e-15 Score=106.80 Aligned_cols=168 Identities=15% Similarity=0.165 Sum_probs=99.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHH----HHc-CCCcHHHHHHHHHcCCCCCHHHH-------HHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKS-GSENGTMIQNMIKEGKIVPSEVT-------IKL 88 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 88 (215)
..+|+|.||+||||||+++.|+..++..++..+..+... ... -....+.+......+.+...... ..-
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~ 81 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIE 81 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHH
Confidence 357999999999999999999998875544433221111 000 11122223333333322111000 012
Q ss_pred HHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcch
Q 028025 89 LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSL 168 (215)
Q Consensus 89 ~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 168 (215)
++..+.. +..+|++|.. .......+ ....+..+|||++|.+++.+|+.+| ++. ..+.+.+|+....
T Consensus 82 ~~~~l~~--g~~VI~~G~~---~~~~~~~~-~~~~~~~vi~l~~s~e~l~~RL~~R--~~~--~~~~i~~rl~r~~---- 147 (186)
T PRK10078 82 IDLWLHA--GFDVLVNGSR---AHLPQARA-RYQSALLPVCLQVSPEILRQRLENR--GRE--NASEINARLARAA---- 147 (186)
T ss_pred HHHHHhC--CCEEEEeChH---HHHHHHHH-HcCCCEEEEEEeCCHHHHHHHHHHh--CCC--CHHHHHHHHHHhh----
Confidence 4444433 6778888752 22223333 3345566899999999999999977 332 4456777764321
Q ss_pred hHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcccc
Q 028025 169 PVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKV 207 (215)
Q Consensus 169 ~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~~ 207 (215)
.+. ....+++|++.++++++++|...+.....+.
T Consensus 148 ----~~~-~ad~~vi~~~~s~ee~~~~i~~~l~~~~~~~ 181 (186)
T PRK10078 148 ----RYQ-PQDCHTLNNDGSLRQSVDTLLTLLHLSQKEK 181 (186)
T ss_pred ----hhc-cCCEEEEeCCCCHHHHHHHHHHHHhhcCccc
Confidence 122 2346778888899999999999998665544
No 66
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.66 E-value=9.5e-15 Score=105.61 Aligned_cols=166 Identities=15% Similarity=0.188 Sum_probs=102.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCC----------------CCHH-
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI----------------VPSE- 83 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~- 83 (215)
.++|.|+|.|||||||+++.+++ +|+.+++.|+..++.+..+.+....+...+..... ....
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 57899999999999999999988 99999999999998877765444333333221111 0000
Q ss_pred ------HHHHHHHHHH----HccCCCeEEEeCCCCCHHHHHHHHHhcC-CCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025 84 ------VTIKLLQKAM----EESGNDKFLIDGFPRNEENRAAFEAVTK-IEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (215)
Q Consensus 84 ------~~~~~~~~~~----~~~~~~~~iidg~~~~~~~~~~~~~~~~-~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~ 152 (215)
+...++...+ .......+++| ...+.+... ..+|.+|++.||+++..+|+.+| + ..+
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~e--------iplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R--~--~~~ 148 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLE--------IPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKR--D--GLD 148 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCceEEE--------chHHHhccccccCCEEEEEECCHHHHHHHHHhc--C--CCC
Confidence 0011222221 11112244444 233333111 12789999999999999999998 4 444
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
.+....++...... .+.+.-. -++++++.+++++.+++...++....
T Consensus 149 ~e~~~~~~~~Q~~~----~ek~~~a--d~vi~n~~~i~~l~~~i~~~~~~~~~ 195 (201)
T COG0237 149 EEDAEARLASQRDL----EEKLALA--DVVIDNDGSIENLLEQIEKLLKELLG 195 (201)
T ss_pred HHHHHHHHHhcCCH----HHHHhhc--CChhhcCCCHHHHHHHHHHHHHHHHh
Confidence 55555554443322 2222222 36788888999999999888765543
No 67
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.66 E-value=2.2e-15 Score=109.06 Aligned_cols=160 Identities=21% Similarity=0.321 Sum_probs=88.4
Q ss_pred EEcCCCCChHHHHHHHHHHhC---CeEee--------HHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025 26 VLGGPGSGKGTQCANIVEHFG---YTHLS--------AGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (215)
Q Consensus 26 i~G~~gsGKsTla~~La~~~~---~~~i~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (215)
|+|+.||||||+++.|++.+. ..++. .+..++..+.............+..... .......+...+.
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r--~~~~~~~I~~~l~ 78 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADR--AWHLARVIRPALK 78 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHH--HHHHHHTHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHH--HHHHHHHHHHHHc
Confidence 689999999999999999994 22111 2444555444222222222111110000 0011123333333
Q ss_pred ccCCCeEEEeCCCCC------------HHHHHHHHHhcCC--CCcEEEEEecCHHHHHHHHhhccC-CCCCCcHHHHHHH
Q 028025 95 ESGNDKFLIDGFPRN------------EENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNRNQ-GREDDNVETIRKR 159 (215)
Q Consensus 95 ~~~~~~~iidg~~~~------------~~~~~~~~~~~~~--~~~~~i~L~~~~e~~~~R~~~r~~-~~~~~~~~~~~~~ 159 (215)
. +..||+|.|..+ ..+...+.. ... .||++|||+++++++.+|+..|.. ............+
T Consensus 79 ~--g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~-~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~ 155 (186)
T PF02223_consen 79 R--GKIVICDRYIYSTLAYQGAKGELDIDWIWRLNK-DIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRR 155 (186)
T ss_dssp T--TSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHH-HHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHH
T ss_pred C--CCEEEEechhHHHHHhCccccCCcchhhhHHHH-HhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHH
Confidence 2 899999964321 233333333 222 999999999999999999999822 1111222222222
Q ss_pred HHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHH
Q 028025 160 FKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196 (215)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i 196 (215)
.. ... .+.....++++++|++.++++++++|
T Consensus 156 ~~---~~y---~~l~~~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 156 VR---EAY---LELAKDPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp HH---HHH---HHHHHTTTTEEEEETTS-HHHHHHHH
T ss_pred HH---HHH---HHHHcCCCCEEEEECCCCHHHHHhhC
Confidence 22 221 12223456799999999999999886
No 68
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.66 E-value=2.5e-15 Score=104.08 Aligned_cols=113 Identities=20% Similarity=0.366 Sum_probs=74.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcH---HHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG---TMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (215)
+|+++|+|||||||+++.|++.+++.+++.|++.........+.. ....... ...+...+...+.. +.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~--g~ 71 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERA-------YQILNAAIRKALRN--GN 71 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHH-------HHHHHHHHHHHHHT--T-
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHH-------HHHHHHHHHHHHHc--CC
Confidence 689999999999999999999999999999886665432211110 0010000 11223444444433 77
Q ss_pred eEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 100 KFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 100 ~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
.+|+|+.......+..+..+ ....+..+|+++++.+++.+|+..|
T Consensus 72 ~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (143)
T PF13671_consen 72 SVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQR 118 (143)
T ss_dssp EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTT
T ss_pred CceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhc
Confidence 89999766665555555553 3333556999999999999999999
No 69
>PLN02422 dephospho-CoA kinase
Probab=99.66 E-value=9.4e-15 Score=107.76 Aligned_cols=163 Identities=19% Similarity=0.142 Sum_probs=102.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHc-----CCCCCHHHH------------
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT------------ 85 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~------------ 85 (215)
+|+|+|.+||||||+++.|+ ++|+.++++|++.++.+..+......+.+.+.. ...+....+
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~ 81 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQ 81 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence 69999999999999999998 689999999999999888765433333332211 111111111
Q ss_pred ------HHHHHHHH----Hc---cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025 86 ------IKLLQKAM----EE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (215)
Q Consensus 86 ------~~~~~~~~----~~---~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~ 152 (215)
...+...+ .. .....+++|.- ...+ .. ....+|.+|++++|+++..+|+.+| + ..+
T Consensus 82 ~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eip-LL~E--~~----~~~~~D~vI~V~a~~e~ri~RL~~R--~--g~s 150 (232)
T PLN02422 82 LLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIP-LLFE--TK----MDKWTKPVVVVWVDPETQLERLMAR--D--GLS 150 (232)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeh-hhhh--cc----hhhhCCEEEEEECCHHHHHHHHHHc--C--CCC
Confidence 12221111 11 11347777741 1111 11 1234789999999999999999988 2 455
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
.+.+.+|+...... .. ..... .++|+++++.+++..++.++++..
T Consensus 151 ~eea~~Ri~~Q~~~----ee-k~~~A-D~VI~N~gs~e~L~~qv~~ll~~l 195 (232)
T PLN02422 151 EEQARNRINAQMPL----DW-KRSKA-DIVIDNSGSLEDLKQQFQKVLEKI 195 (232)
T ss_pred HHHHHHHHHHcCCh----hH-HHhhC-CEEEECCCCHHHHHHHHHHHHHHH
Confidence 67777776443221 11 12222 367778889999999998777554
No 70
>PRK00625 shikimate kinase; Provisional
Probab=99.66 E-value=1e-14 Score=103.54 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcC--CCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG--SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (215)
+.|+|+|+|||||||+++.|++++++.+++.|++++...... ....+.+. ..|...........+.. +.. ..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~---~~Ge~~fr~~E~~~l~~-l~~--~~ 74 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQ---AYGEEGFCREEFLALTS-LPV--IP 74 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHH---HHCHHHHHHHHHHHHHH-hcc--CC
Confidence 359999999999999999999999999999999888753221 11222221 12222222222333332 222 33
Q ss_pred eEEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 100 KFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 100 ~~iidg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
.+|..| .+...+....+. ....+|||++|.+++.+|+.+|
T Consensus 75 ~VIs~GGg~~~~~e~~~~l~-----~~~~Vv~L~~~~e~l~~Rl~~R 116 (173)
T PRK00625 75 SIVALGGGTLMIEPSYAHIR-----NRGLLVLLSLPIATIYQRLQKR 116 (173)
T ss_pred eEEECCCCccCCHHHHHHHh-----cCCEEEEEECCHHHHHHHHhcC
Confidence 344333 222233323322 2356999999999999999988
No 71
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.66 E-value=4e-15 Score=107.89 Aligned_cols=163 Identities=16% Similarity=0.165 Sum_probs=101.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-----CCCCHH--------------
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE-------------- 83 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-------------- 83 (215)
+|+|+|++||||||+++.|++ +|+.+++.|.+.+..+..+......+.+.+... ..+...
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 489999999999999999965 799999999999988776655444444332111 111111
Q ss_pred ----HHHHHH----HHHHHcc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028025 84 ----VTIKLL----QKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (215)
Q Consensus 84 ----~~~~~~----~~~~~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~ 154 (215)
++...+ ...+... .+..+++|. |...+. . ....+|.+|++.+|+++..+|+.+| ...+.+
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~-pLL~E~--~----~~~~~D~vi~V~a~~e~r~~RL~~R----~g~s~e 148 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEV-PLLFET--D----AYTLCDATVTVDSDPEESILRTISR----DGMKKE 148 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEe-eeeeEc--C----chhhCCEEEEEECCHHHHHHHHHHc----CCCCHH
Confidence 112222 2222221 134566664 222221 1 1224789999999999999999988 334567
Q ss_pred HHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
.+..|+..-. +... ...... ++++++++.+++..++..+++..
T Consensus 149 ~a~~ri~~Q~----~~~~-k~~~aD-~vI~N~~~~~~l~~~v~~l~~~~ 191 (196)
T PRK14732 149 DVLARIASQL----PITE-KLKRAD-YIVRNDGNREGLKEECKILYSTL 191 (196)
T ss_pred HHHHHHHHcC----CHHH-HHHhCC-EEEECCCCHHHHHHHHHHHHHHH
Confidence 7777776522 2222 233333 56677779999999999877543
No 72
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.64 E-value=1.2e-14 Score=108.27 Aligned_cols=166 Identities=14% Similarity=0.069 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHc-----CCCCCHHHH-----------
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT----------- 85 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----------- 85 (215)
++|+|+|.+||||||+++.|++.+|+.++++|.+.++.+..+......+.+.+.. ...+....+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999999899999999999999877665443333332211 111111111
Q ss_pred -----------HHHHHHHHH------------ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh
Q 028025 86 -----------IKLLQKAME------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142 (215)
Q Consensus 86 -----------~~~~~~~~~------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~ 142 (215)
...+.+.+. ..+...+++|.-. .++. .+ ....+|.++++.+|.++..+|+.
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPL-L~E~--~~---~~~~~D~iv~V~a~~e~ri~RL~ 155 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPT-LFET--KT---FTYFVSASVVVSCSEERQIERLR 155 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEech-hhcc--Cc---hhhcCCeEEEEECCHHHHHHHHH
Confidence 111111221 1112477888421 1110 00 11246899999999999999999
Q ss_pred hccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCC--CCHHHHHHHHHHhhCCC
Q 028025 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAA--KPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 143 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~e~~~~i~~~l~~~ 203 (215)
+| .+.+.+++.+|+..-.. ... ...... ++|+++ ++.+++..++..++...
T Consensus 156 ~R----~g~s~eea~~Ri~~Q~~----~~e-k~~~aD-~VI~N~~~g~~~~L~~~v~~~~~~~ 208 (244)
T PTZ00451 156 KR----NGFSKEEALQRIGSQMP----LEE-KRRLAD-YIIENDSADDLDELRGSVCDCVAWM 208 (244)
T ss_pred Hc----CCCCHHHHHHHHHhCCC----HHH-HHHhCC-EEEECCCCCCHHHHHHHHHHHHHHH
Confidence 87 34566788888765221 111 223333 455566 89999999999877543
No 73
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.64 E-value=1.1e-14 Score=105.38 Aligned_cols=157 Identities=18% Similarity=0.268 Sum_probs=99.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHH------cCCCCCH--------------
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK------EGKIVPS-------------- 82 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-------------- 82 (215)
+|+|+|.+||||||+++.|++..++.+++.|++.++.+..+.+....+.+.+. +|. +..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~-idr~~L~~~vf~~~~~~ 79 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGE-LDRKALGERVFNDPEEL 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCC-CCHHHHHHHHhCCHHHH
Confidence 48999999999999999999987799999999999888776544333332221 111 111
Q ss_pred --------HHHHHHHHHHHHccC--CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025 83 --------EVTIKLLQKAMEESG--NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (215)
Q Consensus 83 --------~~~~~~~~~~~~~~~--~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~ 152 (215)
..+...+.+.+.... +..++++.... .+ .. ....+|.++++.++.+++.+|+.+| + ..+
T Consensus 80 ~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll-~e--~~----~~~~~D~vv~V~~~~~~~~~Rl~~R--~--~~s 148 (188)
T TIGR00152 80 KWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLL-FE--NK----LRSLCDRVIVVDVSPQLQLERLMQR--D--NLT 148 (188)
T ss_pred HHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHh-hh--CC----cHHhCCEEEEEECCHHHHHHHHHHc--C--CCC
Confidence 011122222232221 34677764221 11 01 1224788999999999999999988 2 455
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHH
Q 028025 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 197 (215)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~ 197 (215)
.+.+.+|+..... ... ..... -++|+++++++++..++.
T Consensus 149 ~~~~~~r~~~q~~----~~~-~~~~a-d~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 149 EEEVQKRLASQMD----IEE-RLARA-DDVIDNSATLADLVKQLE 187 (188)
T ss_pred HHHHHHHHHhcCC----HHH-HHHhC-CEEEECCCCHHHHHHHHh
Confidence 6777777766432 111 12222 366777889999988875
No 74
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=2.1e-14 Score=96.22 Aligned_cols=154 Identities=19% Similarity=0.234 Sum_probs=101.0
Q ss_pred EcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcc--CCCeE
Q 028025 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLLQKAMEES--GNDKF 101 (215)
Q Consensus 27 ~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~ 101 (215)
.|.+||||||+++.||+++++.+++-|++.... ....+..|..+.++.. .+.+...+.+. .+..+
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~a----------Ni~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~ 70 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPA----------NIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV 70 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHH----------HHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence 489999999999999999999999998865432 1233344455544322 23333333331 24445
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEE
Q 028025 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR 181 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (215)
|+-.......-+..+.. ..+. -.+|||+.+.+++.+|+..| ..+.-...-+..++..... | .....++
T Consensus 71 vi~CSALKr~YRD~LR~-~~~~-~~Fv~L~g~~~~i~~Rm~~R--~gHFM~~~ll~SQfa~LE~---P-----~~de~vi 138 (161)
T COG3265 71 VIACSALKRSYRDLLRE-ANPG-LRFVYLDGDFDLILERMKAR--KGHFMPASLLDSQFATLEE---P-----GADEDVL 138 (161)
T ss_pred EEecHHHHHHHHHHHhc-cCCC-eEEEEecCCHHHHHHHHHhc--ccCCCCHHHHHHHHHHhcC---C-----CCCCCEE
Confidence 55543333333333333 2223 34999999999999999999 6666667666666555332 1 1112589
Q ss_pred EEcCCCCHHHHHHHHHHhhCC
Q 028025 182 KIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 182 ~id~~~~~~e~~~~i~~~l~~ 202 (215)
.||.+.+++++++++...++.
T Consensus 139 ~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 139 TIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred EeeCCCCHHHHHHHHHHHHhc
Confidence 999999999999999988864
No 75
>PRK13976 thymidylate kinase; Provisional
Probab=99.64 E-value=6.6e-14 Score=102.48 Aligned_cols=166 Identities=17% Similarity=0.149 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC-----eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCC-HHH-----------
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP-SEV----------- 84 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------- 84 (215)
++|+|+|..||||||+++.|++.|.- .++-. ++ +.+...++.+.+.+....... ...
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~----~e--P~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~ 74 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT----RE--PGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH 74 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe----eC--CCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999998842 11110 00 112223333333332111111 110
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCC------------HHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028025 85 TIKLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (215)
Q Consensus 85 ~~~~~~~~~~~~~~~~~iidg~~~~------------~~~~~~~~~~-~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~ 151 (215)
+...+...+. .|..||.|.|..+ .++...+... ..+.||+.|||++|++++.+|+.++ +....
T Consensus 75 ~~~~I~p~l~--~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~--~~e~~ 150 (209)
T PRK13976 75 FVKVILPALL--QGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN--GYEFM 150 (209)
T ss_pred HHHHHHHHHH--CCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc--chhcc
Confidence 1122333333 2889999986644 1233333321 2357999999999999999998654 22212
Q ss_pred cHHHHHHHHHHHhhcchhHHHHHHh-cCcEEEEcC---CCC---HHHHHHHHHHhhCCCc
Q 028025 152 NVETIRKRFKVFLESSLPVVQYYEA-KGKVRKIDA---AKP---VAEVFDAVKAVFTPKD 204 (215)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~id~---~~~---~~e~~~~i~~~l~~~~ 204 (215)
..+.+.+-...|... ... ....+++|+ +.+ ++++.++|.+.+....
T Consensus 151 ~~~~l~~v~~~Y~~l-------~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~ 203 (209)
T PRK13976 151 DLEFYDKVRKGFREI-------VIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVT 203 (209)
T ss_pred cHHHHHHHHHHHHHH-------HHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHH
Confidence 233322222223221 222 224677777 345 9999999988886554
No 76
>PRK12338 hypothetical protein; Provisional
Probab=99.64 E-value=3.4e-14 Score=108.94 Aligned_cols=181 Identities=15% Similarity=0.197 Sum_probs=103.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcC--CCcHHH----HHHHHH---cCC-CCC------
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG--SENGTM----IQNMIK---EGK-IVP------ 81 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~--~~~~~~----~~~~~~---~~~-~~~------ 81 (215)
|.+|.+|+|+|+|||||||+|+.||+++|+.++..+|.++..+... .+.... ....++ ... ..+
T Consensus 1 m~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~ 80 (319)
T PRK12338 1 MRKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELIC 80 (319)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHH
Confidence 3468899999999999999999999999999997789999876552 111001 111111 111 111
Q ss_pred ------HHHHHHHHHHHHHc--cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCC
Q 028025 82 ------SEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDD 151 (215)
Q Consensus 82 ------~~~~~~~~~~~~~~--~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~ 151 (215)
...+...+...+.. .++..+|+||.-........... ....+-.+++|..+++...+|...| ...+..
T Consensus 81 ~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~-~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~~- 158 (319)
T PRK12338 81 AGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQF-EENASIHFFILSADEEVHKERFVKRAMEIKRGG- 158 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhh-cccCceEEEEEECCHHHHHHHHHHhhhccCCch-
Confidence 11222222222322 24889999996444333332111 1122334666678899999999998 222322
Q ss_pred cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
...+.+...+.....+.+. .....+.++++ .+.++.++.+.+.+.+...
T Consensus 159 ---~~l~~f~~Ir~Iq~~l~~~-A~e~~VpvI~N-~did~Tv~~ile~I~e~s~ 207 (319)
T PRK12338 159 ---KQLEYFRENRIIHDHLVEQ-AREHNVPVIKN-DDIDCTVKKMLSYIREVCV 207 (319)
T ss_pred ---hhhhChHHHHHHHHHHHHh-HhhCCCceeCC-CcHHHHHHHHHHHHHhheE
Confidence 2222222222222223333 22234556655 4899999999888876544
No 77
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.63 E-value=1.5e-14 Score=117.79 Aligned_cols=173 Identities=19% Similarity=0.288 Sum_probs=100.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHH----HHcCCCc--HHHHHHHHHcCC--------------
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSEN--GTMIQNMIKEGK-------------- 78 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~-------------- 78 (215)
.++++|.|.|++||||||+++.|++++|+.+++.|+++|.. +..+... ...+...+.+-.
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~ 361 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVW 361 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEE
Confidence 36789999999999999999999999999999999999985 2222211 122222221000
Q ss_pred ----CCCH-----------------HHHHHH---HHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH
Q 028025 79 ----IVPS-----------------EVTIKL---LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (215)
Q Consensus 79 ----~~~~-----------------~~~~~~---~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~ 134 (215)
.+.. ..+.+. .++.+.. ..++|+||.- .-+ ...+..++.|||++++
T Consensus 362 ~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~--~~~iV~eGRD--igt------vV~P~AdlKIfL~As~ 431 (512)
T PRK13477 362 INGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGE--KGGLVAEGRD--IGT------HVFPDAELKIFLTASV 431 (512)
T ss_pred eCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhh--cCCEEEEccc--cee------EEcCCCCEEEEEECCH
Confidence 0000 000111 1111221 4468888832 110 0345678999999999
Q ss_pred HHHHHHHhhc--cCCCCCCcHHHHHHHHHH--HhhcchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025 135 EEMERRILNR--NQGREDDNVETIRKRFKV--FLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 135 e~~~~R~~~r--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~~ 202 (215)
+++.+|+.++ .++......+.+.+.+.. +.+..+.....|... ..+++|+ +.+++++++.|...++.
T Consensus 432 evRa~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~-dai~IDTs~lsieeVv~~Il~~i~~ 503 (512)
T PRK13477 432 EERARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKAD-DAIELITDGLSIEEVVDKIIDLYRD 503 (512)
T ss_pred HHHHHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccC-CeEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999986544 223222233444443322 112222222223322 3466665 77999999999998864
No 78
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=2.9e-14 Score=96.16 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=102.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-------HHHHHHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-------IKLLQKAM 93 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 93 (215)
+.+|++.|++||||||+++.|++++++.+++.||+..... .+.+..|..+.++.. ...+...+
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~N----------veKM~~GipLnD~DR~pWL~~i~~~~~~~l 81 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPAN----------VEKMTQGIPLNDDDRWPWLKKIAVELRKAL 81 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHH----------HHHHhcCCCCCcccccHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999988754331 122233333332211 22222333
Q ss_pred HccCCCeEEEeCCCCCHHHHHHHHHh-------cCCCC-cEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhh
Q 028025 94 EESGNDKFLIDGFPRNEENRAAFEAV-------TKIEP-EFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE 165 (215)
Q Consensus 94 ~~~~~~~~iidg~~~~~~~~~~~~~~-------~~~~~-~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~ 165 (215)
. +++++|+........-+..+... ..+.. -.+|+|.++.|++..|+.+| ..+.-..+-+..++.....
T Consensus 82 ~--~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R--~gHFMp~~lleSQf~~LE~ 157 (191)
T KOG3354|consen 82 A--SGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKR--KGHFMPADLLESQFATLEA 157 (191)
T ss_pred h--cCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhc--ccccCCHHHHHHHHHhccC
Confidence 2 48889987643322222222221 11112 24899999999999999999 5555566666666554332
Q ss_pred cchhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhCC
Q 028025 166 SSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTP 202 (215)
Q Consensus 166 ~~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~~ 202 (215)
- . .+..+++.|+.. .+++++++.|.+.+..
T Consensus 158 p---~----~~e~div~isv~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 158 P---D----ADEEDIVTISVKTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred C---C----CCccceEEEeeccCCHHHHHHHHHHHHHh
Confidence 1 1 112257888774 8999999999887653
No 79
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.63 E-value=1.4e-14 Score=109.52 Aligned_cols=160 Identities=18% Similarity=0.307 Sum_probs=93.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
+|+|+|+|||||||+|+.|++.++ ..+++. |.++..... +....... ........+...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~---~~~~~e~~-------~~~~~~~~i~~~l~~-- 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPV---WKEKYEEF-------IRDSTLYLIKTALKN-- 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHH---hhHHhHHH-------HHHHHHHHHHHHHhC--
Confidence 589999999999999999999883 344544 445443211 00000011 112223455555543
Q ss_pred CCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025 98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (215)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (215)
+..+|+|+.......+..+... ....+..+||+++|.+++.+|...| +.. ...+.+.+.+..|.. +... +.
T Consensus 68 ~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R--~~~-~~~~~i~~l~~r~e~---p~~~-~~ 140 (249)
T TIGR03574 68 KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER--GEK-IPNEVIKDMYEKFDE---PGTK-YS 140 (249)
T ss_pred CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC--CCC-CCHHHHHHHHHhhCC---CCCC-CC
Confidence 5679999865443333333321 3345667999999999999999888 432 223334333333322 1111 11
Q ss_pred hcCcEEEEcCCC--CHHHHHHHHHHhhCC
Q 028025 176 AKGKVRKIDAAK--PVAEVFDAVKAVFTP 202 (215)
Q Consensus 176 ~~~~~~~id~~~--~~~e~~~~i~~~l~~ 202 (215)
.....+++|++. +.+++++.|...+..
T Consensus 141 wd~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 141 WDLPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred ccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 122467888754 778999999887654
No 80
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.61 E-value=8.7e-14 Score=99.62 Aligned_cols=160 Identities=13% Similarity=0.115 Sum_probs=89.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC--eEeeHHHHHHHHHHcCCCcHHHHHHHHHcC--CCCC-------HHHHHHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEG--KIVP-------SEVTIKLL 89 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~ 89 (215)
..+|+++|+|||||||+|+.|++.++. .+++.|++........... .......+ ...+ .......+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 78 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDA---EGGIEFDGDGGVSPGPEFRLLEGAWYEAV 78 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhccc---ccccccCccCCcccchHHHHHHHHHHHHH
Confidence 458999999999999999999999864 4456766544321111100 00000000 0011 11112233
Q ss_pred HHHHHccCCCeEEEeCCCC-CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcch
Q 028025 90 QKAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSL 168 (215)
Q Consensus 90 ~~~~~~~~~~~~iidg~~~-~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 168 (215)
...+. .|..+|+|.... .......+.. ....+...|++.||.+++.+|+.+| +... . .+.... + .
T Consensus 79 ~~~l~--~G~~VIvD~~~~~~~~~r~~~~~-~~~~~~~~v~l~~~~~~l~~R~~~R--~~~~--~-~~~~~~--~-~--- 144 (175)
T cd00227 79 AAMAR--AGANVIADDVFLGRAALQDCWRS-FVGLDVLWVGVRCPGEVAEGRETAR--GDRV--P-GQARKQ--A-R--- 144 (175)
T ss_pred HHHHh--CCCcEEEeeeccCCHHHHHHHHH-hcCCCEEEEEEECCHHHHHHHHHhc--CCcc--c-hHHHHH--H-H---
Confidence 33332 288999997443 3333344544 2233457999999999999999988 3221 1 111110 0 0
Q ss_pred hHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhh
Q 028025 169 PVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVF 200 (215)
Q Consensus 169 ~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l 200 (215)
..+......+.+|++ .++++++++|...|
T Consensus 145 ---~~~~~~~~dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 145 ---VVHAGVEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred ---HhcCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence 001112234677775 58999999998776
No 81
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.61 E-value=2.9e-14 Score=102.65 Aligned_cols=168 Identities=20% Similarity=0.239 Sum_probs=102.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc---C----CCcHHHHHHHHHcCCCCCHH--------
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---G----SENGTMIQNMIKEGKIVPSE-------- 83 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~-------- 83 (215)
.++++|+|+||+|||||||++.|.+.+.-.+++.....|..... + .-..+.+...+..+.++...
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 46789999999999999999999888743233333333322111 0 01224455555555543321
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028025 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKRFKV 162 (215)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~ 162 (215)
...+.++..+.. +..+|+|- .......+.. ..+..-++||+.+ +.+++.+|+.+| .....+.+.+|+..
T Consensus 82 t~~~~i~~~~~~--g~~~i~d~---~~~g~~~l~~-~~~~~~~~Ifi~pps~e~l~~RL~~R----~~~s~e~i~~Rl~~ 151 (186)
T PRK14737 82 TPKAFIEDAFKE--GRSAIMDI---DVQGAKIIKE-KFPERIVTIFIEPPSEEEWEERLIHR----GTDSEESIEKRIEN 151 (186)
T ss_pred CcHHHHHHHHHc--CCeEEEEc---CHHHHHHHHH-hCCCCeEEEEEECCCHHHHHHHHHhc----CCCCHHHHHHHHHH
Confidence 114445666544 88999984 3455555555 4333326888888 468899999977 33456778888876
Q ss_pred HhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025 163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
.... .. +...... +|+++ +++++.+++..++...
T Consensus 152 ~~~e----~~-~~~~~D~-vI~N~-dle~a~~ql~~ii~~~ 185 (186)
T PRK14737 152 GIIE----LD-EANEFDY-KIIND-DLEDAIADLEAIICGK 185 (186)
T ss_pred HHHH----Hh-hhccCCE-EEECc-CHHHHHHHHHHHHhcC
Confidence 4321 11 2222334 44444 8999999999888653
No 82
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.61 E-value=8.2e-14 Score=102.57 Aligned_cols=170 Identities=21% Similarity=0.295 Sum_probs=96.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH----HcCCC--cHHHHHHHHHc-----------------C
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSE--NGTMIQNMIKE-----------------G 77 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~----~~~~~--~~~~~~~~~~~-----------------~ 77 (215)
+++|.|.||+||||||+++.|++++++.+++.|++++... ..+.. ....+...... +
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNG 81 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence 5789999999999999999999999999999999987662 11211 11111111110 0
Q ss_pred CCCCH-----------------HHHHHHHHHHHHcc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHH
Q 028025 78 KIVPS-----------------EVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139 (215)
Q Consensus 78 ~~~~~-----------------~~~~~~~~~~~~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~ 139 (215)
..+.. ..+...+.....+. ...++|+||... .+ . ..+..++.|||++|.++..+
T Consensus 82 ~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~~~~Vi~Gr~~--~~--~----v~~~a~~~ifl~a~~~~Ra~ 153 (217)
T TIGR00017 82 EDVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKNDGIIADGRDI--GT--V----VFPNAEVKIFLDASVEERAK 153 (217)
T ss_pred cchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCEEEEEcCc--ce--E----EeCCCCEEEEEECCHHHHHH
Confidence 00000 00011222111111 245799998521 11 0 23346789999999999888
Q ss_pred HHhhc-cCCCCCCcHHHHHHHHHHH--hhcchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHh
Q 028025 140 RILNR-NQGREDDNVETIRKRFKVF--LESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAV 199 (215)
Q Consensus 140 R~~~r-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~ 199 (215)
|...+ .........+.+.+.+..- .+..+.. ..+......+++|+ ..+++++++.|..+
T Consensus 154 Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~-~~~~~a~~~i~Idts~l~ieevv~~I~~~ 216 (217)
T TIGR00017 154 RRYKQLQIKGNEVNFEELLAEIKERDDRDSNREV-APLKKADDALYLDTSNLSIDEVVEKILEY 216 (217)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHhccccccc-CcccCCCCeEEEECCCCCHHHHHHHHHHh
Confidence 88766 1111133345555554322 1222222 22233334466666 77999999998764
No 83
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.61 E-value=1.1e-14 Score=104.61 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=82.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC-----CCCH---------------
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-----IVPS--------------- 82 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--------------- 82 (215)
+|+|+|+|||||||+++.|++ +|+.++++|++.++.+..+......+...+.... .+..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999988 9999999999999987776655555544432211 1111
Q ss_pred ---HHHHHHHHHH----HHccC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028025 83 ---EVTIKLLQKA----MEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (215)
Q Consensus 83 ---~~~~~~~~~~----~~~~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~ 154 (215)
.+....+... +.... ...+++|+... .+ ..+. ..+|.++++++|+++..+|+..| .....+
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~plL-~e--~~~~----~~~D~vv~V~a~~~~ri~Rl~~R----d~~s~~ 148 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDIPLL-FE--TGLE----KLVDRVIVVDAPPEIQIERLMKR----DGLSEE 148 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEEehHh-hc--CCcH----HhCCeEEEEECCHHHHHHHHHHc----CCCCHH
Confidence 1112222222 22222 25677775211 11 1111 24788999999999999999987 234567
Q ss_pred HHHHHHHH
Q 028025 155 TIRKRFKV 162 (215)
Q Consensus 155 ~~~~~~~~ 162 (215)
.+.+|+..
T Consensus 149 ~~~~r~~~ 156 (179)
T cd02022 149 EAEARIAS 156 (179)
T ss_pred HHHHHHHh
Confidence 77777665
No 84
>PLN02199 shikimate kinase
Probab=99.61 E-value=1.5e-13 Score=103.84 Aligned_cols=174 Identities=15% Similarity=0.174 Sum_probs=102.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (215)
+...|+|+|.+||||||+++.|++.+|+.+++.|.++++... +....+.+. ..|.....+.-.+.+.+.... .
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G~sI~eIf~---~~GE~~FR~~E~e~L~~L~~~---~ 173 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-GTSVAEIFV---HHGENFFRGKETDALKKLSSR---Y 173 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-CCCHHHHHH---HhCHHHHHHHHHHHHHHHHhc---C
Confidence 356899999999999999999999999999999998888633 333332222 223333333334555554322 2
Q ss_pred eEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCC---CcHHH---HHHHHHHHhhcchhHHH
Q 028025 100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGRED---DNVET---IRKRFKVFLESSLPVVQ 172 (215)
Q Consensus 100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~ 172 (215)
.+|+..-.........+..+. -..+|||++|.+++.+|+... ...|+- ...+. ...++...++...++
T Consensus 174 ~~VIStGGG~V~~~~n~~~L~---~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~pl-- 248 (303)
T PLN02199 174 QVVVSTGGGAVIRPINWKYMH---KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEA-- 248 (303)
T ss_pred CEEEECCCcccCCHHHHHHHh---CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHH--
Confidence 333331111111112222211 246999999999999999852 112221 11211 124454445544455
Q ss_pred HHHhcCcEEEE------------cCCCCHHHHHHHHHHhhCCCcccc
Q 028025 173 YYEAKGKVRKI------------DAAKPVAEVFDAVKAVFTPKDEKV 207 (215)
Q Consensus 173 ~~~~~~~~~~i------------d~~~~~~e~~~~i~~~l~~~~~~~ 207 (215)
|.. ..+.+. .++.++++++.+|...+.....+.
T Consensus 249 -Y~~-Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~~ 293 (303)
T PLN02199 249 -YTN-ANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKE 293 (303)
T ss_pred -HHh-CCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhhc
Confidence 555 333333 246799999999988887666543
No 85
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.60 E-value=9.1e-14 Score=107.92 Aligned_cols=166 Identities=16% Similarity=0.268 Sum_probs=94.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
+.++..|+|+|+|||||||+++.|++.+|+.+++.|..+... .+....+.+.. .+...........+...+...
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~--~G~~i~ei~~~---~G~~~fr~~e~~~l~~ll~~~- 203 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIERE--AGLSVSEIFAL---YGQEGYRRLERRALERLIAEH- 203 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHH--hCCCHHHHHHH---HCHHHHHHHHHHHHHHHHhhC-
Confidence 456778999999999999999999999999999987765543 12222221111 122111223234444444322
Q ss_pred CCeEEEeCCC--CCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCC----CCcHHHHHHHHHHHhhcchhHH
Q 028025 98 NDKFLIDGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRE----DDNVETIRKRFKVFLESSLPVV 171 (215)
Q Consensus 98 ~~~~iidg~~--~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 171 (215)
+..+|-.|.. ........+.. ..++|||.+|++++.+|+.+|...++ ....+.+.+.+. ...++
T Consensus 204 ~~~VI~~Ggg~v~~~~~~~~l~~-----~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~----~R~~~- 273 (309)
T PRK08154 204 EEMVLATGGGIVSEPATFDLLLS-----HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILA----SREPL- 273 (309)
T ss_pred CCEEEECCCchhCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHH----HHHHH-
Confidence 3334433321 11122222222 34699999999999999987721121 112233333222 22233
Q ss_pred HHHHhcCcEEEEcC-CCCHHHHHHHHHHhhCCC
Q 028025 172 QYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 172 ~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~~~ 203 (215)
|.. .. +++|+ ..++++++++|...+...
T Consensus 274 --y~~-ad-~~I~t~~~s~ee~~~~I~~~l~~~ 302 (309)
T PRK08154 274 --YAR-AD-AVVDTSGLTVAQSLARLRELVRPA 302 (309)
T ss_pred --HHh-CC-EEEECCCCCHHHHHHHHHHHHHHH
Confidence 322 22 45555 559999999999888543
No 86
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.60 E-value=6.1e-14 Score=94.06 Aligned_cols=156 Identities=17% Similarity=0.251 Sum_probs=95.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCe
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (215)
.+-|+|+|.||+||||+|..||+.+++.++..+++.++.-.. +...+-.+ -..+..+.+...++..+.. .+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~-----~gyDE~y~-c~i~DEdkv~D~Le~~m~~---Gg 77 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLY-----EGYDEEYK-CHILDEDKVLDELEPLMIE---GG 77 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcch-----hccccccc-CccccHHHHHHHHHHHHhc---CC
Confidence 456999999999999999999999999999999998874111 11111111 1334455667778888764 67
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH--HHhhcchhHHHHHHhcC
Q 028025 101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK--VFLESSLPVVQYYEAKG 178 (215)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 178 (215)
.|+|-+.. ..|.. .-+|+++.|.+|.+++..|+..| +.+.. .+...++ .+.-......+.|+. .
T Consensus 78 ~IVDyHgC-----d~Fpe---rwfdlVvVLr~~~s~LY~RL~sR--gY~e~---Ki~eNiecEIfgv~~eea~eSy~~-~ 143 (176)
T KOG3347|consen 78 NIVDYHGC-----DFFPE---RWFDLVVVLRTPNSVLYDRLKSR--GYSEK---KIKENIECEIFGVVLEEARESYSP-K 143 (176)
T ss_pred cEEeeccc-----Cccch---hheeEEEEEecCchHHHHHHHHc--CCCHH---HHhhhcchHHHHHHHHHHHHHcCC-c
Confidence 88885432 22211 23578999999999999999998 53332 2222221 111111111222332 2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhh
Q 028025 179 KVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 179 ~~~~id~~~~~~e~~~~i~~~l 200 (215)
.+..+.++ +.++....|.+.+
T Consensus 144 iV~eL~s~-~~Eem~~ni~ri~ 164 (176)
T KOG3347|consen 144 IVVELQSE-TKEEMESNISRIL 164 (176)
T ss_pred ceeecCcC-CHHHHHHHHHHHH
Confidence 45555554 5577777765544
No 87
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.59 E-value=4.6e-14 Score=103.97 Aligned_cols=175 Identities=15% Similarity=0.219 Sum_probs=92.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (215)
+.++.+|+|.|++||||||+++.|++.++ ..+++.|+++...... .........+........+.+.+.+.....
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 80 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHL--SFEERVKTNYDHPDAFDHDLLIEHLKALKA 80 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccC--CHHHhcccCccCcccccHHHHHHHHHHHHc
Confidence 35789999999999999999999999983 5667777765422100 000000000000011111112222211110
Q ss_pred ----------------------ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025 95 ----------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (215)
Q Consensus 95 ----------------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~ 152 (215)
..+...+|+||...... .. ....+|..|||++|.+++..|...|.....+..
T Consensus 81 ~~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~----~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~ 154 (209)
T PRK05480 81 GKAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ER----LRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRS 154 (209)
T ss_pred CCccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hh----HhhhhceeEEEeCChhHHHHHHHhhcchhcCCC
Confidence 11245788898643211 11 122467899999999999999888821111234
Q ss_pred HHHHHHHHHHH-hhcchhHHHHHHhcCcEEEEcCCC----CHHHHHHHHHHhhC
Q 028025 153 VETIRKRFKVF-LESSLPVVQYYEAKGKVRKIDAAK----PVAEVFDAVKAVFT 201 (215)
Q Consensus 153 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~id~~~----~~~e~~~~i~~~l~ 201 (215)
.+.+.+++... ..........+.... -++++++. +.+++.++|..++.
T Consensus 155 ~e~~~~~~~~~~~~~~~~~i~~~~~~A-D~vI~~~~~~~~~~~~l~~~i~~~~~ 207 (209)
T PRK05480 155 LESVINQYLSTVRPMHLQFIEPSKRYA-DIIIPEGGKNRVAIDILKAKIRQLLE 207 (209)
T ss_pred HHHHHHHHHHhhhhhHHhhccHhhcce-eEEecCCCcchHHHHHHHHHHHHHhh
Confidence 45555544322 111111122222233 35565444 78888888877664
No 88
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.59 E-value=1e-14 Score=104.02 Aligned_cols=152 Identities=17% Similarity=0.192 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC-----CCCHHHH-----------
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-----IVPSEVT----------- 85 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----------- 85 (215)
++|+|+|..||||||+++.|++ +|+.++++|.+.+..+..+......+.+.+...- .+....+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5899999999999999999977 9999999999998887766655445444332211 1111111
Q ss_pred -----------HHHHHHHHHccCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028025 86 -----------IKLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (215)
Q Consensus 86 -----------~~~~~~~~~~~~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~ 153 (215)
...+...+..... ..+++|.-. ..+. . ....+|.+|++.+|+++..+|+.+| .+.+.
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pL-L~E~--~----~~~~~D~vi~V~a~~e~ri~Rl~~R----~~~~~ 148 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPL-LFES--G----LEKLCDEVIVVYAPEEIRIKRLMER----DGLSE 148 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TT-TTTT--T----GGGGSSEEEEEE--HHHHHHHHHHH----HTSTH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcch-hhhh--h----HhhhhceEEEEECCHHHHHHHHHhh----CCCcH
Confidence 2222232333223 677888522 1111 1 2234789999999999999999988 34556
Q ss_pred HHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHH
Q 028025 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAE 191 (215)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e 191 (215)
+.+.+++..-.. ...... .. -++|+++++.+|
T Consensus 149 ~~~~~ri~~Q~~----~~~k~~-~a-d~vI~N~g~~~~ 180 (180)
T PF01121_consen 149 EEAEARIASQMP----DEEKRK-RA-DFVIDNNGSLEE 180 (180)
T ss_dssp HHHHHHHHTS------HHHHHH-H--SEEEE-SSHHH-
T ss_pred HHHHHHHHhCCC----HHHHHH-hC-CEEEECCCCCCC
Confidence 677776554222 111112 22 267777777654
No 89
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.59 E-value=8.4e-14 Score=99.83 Aligned_cols=161 Identities=19% Similarity=0.231 Sum_probs=86.8
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (215)
..+|.+|+|+|+|||||||+++.|++.++ ..+++.+. ++..+.... ... ... .. .......+...
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~-~r~~~~~~~-~~~-~~~-~~------~~~~~~~l~~~ 73 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE-LREILGHYG-YDK-QSR-IE------MALKRAKLAKF 73 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH-HHhhcCCCC-CCH-HHH-HH------HHHHHHHHHHH
Confidence 35678999999999999999999999985 55665544 444322210 000 000 00 00112223333
Q ss_pred HHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHhhcchhHH
Q 028025 93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSLPVV 171 (215)
Q Consensus 93 ~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (215)
+.. .+..||+|+... ......... ....+.+.|||++|++++.+|..++ .+.... +.+ ........+.
T Consensus 74 l~~-~g~~VI~~~~~~-~~~~~~~~~-~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~---~~~----~~~~~~~~~~- 142 (176)
T PRK05541 74 LAD-QGMIVIVTTISM-FDEIYAYNR-KHLPNYFEVYLKCDMEELIRRDQKGLYTKALK---GEI----KNVVGVDIPF- 142 (176)
T ss_pred HHh-CCCEEEEEeCCc-HHHHHHHHH-hhcCCeEEEEEeCCHHHHHHhchhhHHHHHHc---Ccc----cccccCCCcc-
Confidence 332 377899997542 222222222 3344567999999999999997532 000000 011 1111111111
Q ss_pred HHHHhcCcEEEEcCC--CCHHHHHHHHHHhhCC
Q 028025 172 QYYEAKGKVRKIDAA--KPVAEVFDAVKAVFTP 202 (215)
Q Consensus 172 ~~~~~~~~~~~id~~--~~~~e~~~~i~~~l~~ 202 (215)
|.... -+++|++ .++++++++|...+..
T Consensus 143 --~~~~A-d~vI~~~~~~~~~~~v~~i~~~l~~ 172 (176)
T PRK05541 143 --DEPKA-DLVIDNSCRTSLDEKVDLILNKLKL 172 (176)
T ss_pred --cCCCC-CEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 22223 3455554 4899999888877743
No 90
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.59 E-value=3.7e-14 Score=98.64 Aligned_cols=144 Identities=15% Similarity=0.186 Sum_probs=83.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEE
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (215)
+|.|.|+|||||||+|+.|++++++.+++.|.+..+.... .. ..... .......+...+.. +.. ...+|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~------~~-~~~~~-~~~i~~~l~~~~~~-~~~--~~~~V 69 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK------LA-SEVAA-IPEVRKALDERQRE-LAK--KPGIV 69 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHH------HH-HHhcc-cHhHHHHHHHHHHH-Hhh--CCCEE
Confidence 5899999999999999999999999999987432221100 00 00000 00001111222222 221 45799
Q ss_pred EeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHhhcc-hhHHHHHHhcCcE
Q 028025 103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESS-LPVVQYYEAKGKV 180 (215)
Q Consensus 103 idg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 180 (215)
+||...... ....++++|||++|++...+|+.+| ...+...+.+.+.+++..-.... .....+|.....-
T Consensus 70 idg~~~~~~--------~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d 141 (147)
T cd02020 70 LEGRDIGTV--------VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDA 141 (147)
T ss_pred EEeeeeeeE--------EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCc
Confidence 998642111 1234789999999999999999986 22334556666666665443321 2223334334444
Q ss_pred EEEcC
Q 028025 181 RKIDA 185 (215)
Q Consensus 181 ~~id~ 185 (215)
+++|+
T Consensus 142 l~i~~ 146 (147)
T cd02020 142 IVIDT 146 (147)
T ss_pred EEEeC
Confidence 56654
No 91
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.58 E-value=5.1e-14 Score=102.45 Aligned_cols=116 Identities=22% Similarity=0.357 Sum_probs=64.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-------HHHHHHHHHc
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-------IKLLQKAMEE 95 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 95 (215)
+|+|+|++||||||+++.|++++++.++....- .....+..+...+.+......... .+.+......
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~------~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~ 74 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVE------PDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH 74 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcccccccc------ccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999988754432110 000001111111111111111111 1112222111
Q ss_pred -cCCCeEEEeCCCCCHH------------------HHHHHHH-h--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 96 -SGNDKFLIDGFPRNEE------------------NRAAFEA-V--TKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 96 -~~~~~~iidg~~~~~~------------------~~~~~~~-~--~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
..+..+|+|+++.+.. ....+.. + ....||++|||+++++++.+|+.+|
T Consensus 75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R 145 (193)
T cd01673 75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKR 145 (193)
T ss_pred cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 1378999998765311 0111111 1 2467999999999999999999988
No 92
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.58 E-value=1.1e-13 Score=114.85 Aligned_cols=172 Identities=17% Similarity=0.224 Sum_probs=101.8
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
+.+...|+++|+|||||||+++.||+.+|+.+++.|+.+.+.. +....+.+. ..|+..+.+.-.+.+.+....
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~--g~si~eif~---~~Ge~~FR~~E~~~l~~~~~~-- 75 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI--GMSIPSYFE---EYGEPAFREVEADVVADMLED-- 75 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH--CcCHHHHHH---HHHHHHHHHHHHHHHHHHHhc--
Confidence 3456789999999999999999999999999999999877653 222222221 234433444445555554432
Q ss_pred CCeEE-EeC-CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025 98 NDKFL-IDG-FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (215)
Q Consensus 98 ~~~~i-idg-~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (215)
...+| ..| .+...+....+.+ ....-..+|||+++++++.+|+..+ ..|+-... ...+++...+....++ |.
T Consensus 76 ~~~VIs~GGG~v~~~~n~~~L~~-~~~~~g~vv~L~~~~~~l~~Rl~~~-~~RPll~~-~~~~~~~~l~~~R~~~---Y~ 149 (542)
T PRK14021 76 FDGIFSLGGGAPMTPSTQHALAS-YIAHGGRVVYLDADPKEAMERANRG-GGRPMLNG-DANKRWKKLFKQRDPV---FR 149 (542)
T ss_pred CCeEEECCCchhCCHHHHHHHHH-HHhcCCEEEEEECCHHHHHHHHhCC-CCCCCCCC-CcHHHHHHHHHHHHHH---HH
Confidence 22233 233 2333333333322 1112236999999999999999754 12222111 1123333344433444 55
Q ss_pred hcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 176 AKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 176 ~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
....+.+..+..++++++++|...+..
T Consensus 150 ~~Ad~~i~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 150 QVANVHVHTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred hhCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 444444444467999999999888764
No 93
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.58 E-value=1.9e-13 Score=95.42 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=76.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH----HcCCCcHHHHHHHHHcCCCCCHHHH---HHHHHHHHHc
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVPSEVT---IKLLQKAMEE 95 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 95 (215)
+|+|.|+|||||||+|+.|++.++..+++.|++..... ..+....+.. ..... .......+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~- 69 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDED----------RWPWLQALTDALLAKLA- 69 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccc----------hhhHHHHHHHHHHHHHH-
Confidence 48999999999999999999999999999877654321 1111111000 00111 111111111
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028025 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF 163 (215)
Q Consensus 96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 163 (215)
..+..+|+|+..........+..+....+..+||+.+|.+++.+|+..| .......+.+......+
T Consensus 70 ~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~ 135 (150)
T cd02021 70 SAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR--KGHFMPADLLDSQFETL 135 (150)
T ss_pred hCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc--ccCCCCHHHHHHHHHHh
Confidence 1366788887555555555555411123456999999999999999988 32223344555544443
No 94
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.58 E-value=1.1e-13 Score=95.65 Aligned_cols=168 Identities=18% Similarity=0.196 Sum_probs=100.1
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh---CC-eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ 90 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~---~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (215)
.+.+.++.+|+++|.+||||||+|.+|.+++ |+ .++--||-+|.-+..+-.+...-... +-.....+.
T Consensus 17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~e--------niRRvaevA 88 (197)
T COG0529 17 ALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIE--------NIRRVAEVA 88 (197)
T ss_pred HHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHH--------HHHHHHHHH
Confidence 3445678999999999999999999999998 33 33444577887766544443221110 001133344
Q ss_pred HHHHccCCCeEEEeCCCCCH-HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchh
Q 028025 91 KAMEESGNDKFLIDGFPRNE-ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP 169 (215)
Q Consensus 91 ~~~~~~~~~~~iidg~~~~~-~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (215)
+.+... |..+++. +...+ ..+....++......+-||++||.++|.+|--+. -+.+........+..
T Consensus 89 kll~da-G~iviva-~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKG----------LYkKAr~GeI~~fTG 156 (197)
T COG0529 89 KLLADA-GLIVIVA-FISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKG----------LYKKARAGEIKNFTG 156 (197)
T ss_pred HHHHHC-CeEEEEE-eeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchH----------HHHHHHcCCCCCCcC
Confidence 444432 4444443 33333 2333333322223457899999999999994332 222222222334444
Q ss_pred HHHHHHhcC-cEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025 170 VVQYYEAKG-KVRKIDA-AKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 170 ~~~~~~~~~-~~~~id~-~~~~~e~~~~i~~~l~~ 202 (215)
+...|+.+. +-+.+|+ ..++++.+++|..++..
T Consensus 157 id~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l~~ 191 (197)
T COG0529 157 IDSPYEAPENPELHLDTDRNSVEECVEQILDLLKE 191 (197)
T ss_pred CCCCCCCCCCCeeEeccccCCHHHHHHHHHHHHHh
Confidence 445565543 6677776 68999999999988864
No 95
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.57 E-value=2.7e-14 Score=101.03 Aligned_cols=113 Identities=15% Similarity=0.204 Sum_probs=66.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCc---HHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSEN---GTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (215)
++|+++|+|||||||+|+.|++.+. +.+++.+.-+...+.+...+ .+...+.+ .+....++..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~-------~ks~~rlldSalk- 73 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESF-------LKSVERLLDSALK- 73 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHH-------HHHHHHHHHHHhc-
Confidence 5799999999999999999999984 44443322122211111111 11111111 1122335555554
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 96 SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 96 ~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
+..||+|.....-..+..+... ....+..+||+.+|.++|.+|...|
T Consensus 74 --n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~er 122 (261)
T COG4088 74 --NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRER 122 (261)
T ss_pred --ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccC
Confidence 6789999744322222222211 5566777999999999999999776
No 96
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.57 E-value=8.5e-14 Score=97.42 Aligned_cols=164 Identities=16% Similarity=0.222 Sum_probs=106.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc---C----CCcHHHHHHHHHcCCCCCHHHH-------
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---G----SENGTMIQNMIKEGKIVPSEVT------- 85 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~------- 85 (215)
++.+++|+||+|+||||+++.|-+..+ ..++.....|...++ | .-..+.+.+.+..+.++.....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence 688999999999999999999988884 445554555543222 1 1233667777777666542211
Q ss_pred -HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecC-HHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028025 86 -IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKVF 163 (215)
Q Consensus 86 -~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~-~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 163 (215)
...++..+.. |..+++| ........... ..+ ....||+.+| .+++.+|+..| ..++.+.+.+|+...
T Consensus 82 ~~~~ve~~~~~--G~~vild---Id~qGa~qvk~-~~p-~~v~IFi~pPs~eeL~~RL~~R----gtds~e~I~~Rl~~a 150 (191)
T COG0194 82 SREPVEQALAE--GKDVILD---IDVQGALQVKK-KMP-NAVSIFILPPSLEELERRLKGR----GTDSEEVIARRLENA 150 (191)
T ss_pred cHHHHHHHHhc--CCeEEEE---EehHHHHHHHH-hCC-CeEEEEEcCCCHHHHHHHHHcc----CCCCHHHHHHHHHHH
Confidence 4455555554 7888888 22333444444 444 4456777764 57799999866 667889999999887
Q ss_pred hhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
..... .+... ..+++|. +++..++.+...+..
T Consensus 151 ~~Ei~----~~~~f-dyvivNd--d~e~a~~~l~~ii~a 182 (191)
T COG0194 151 KKEIS----HADEF-DYVIVND--DLEKALEELKSIILA 182 (191)
T ss_pred HHHHH----HHHhC-CEEEECc--cHHHHHHHHHHHHHH
Confidence 76533 23333 3455554 678888888777653
No 97
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.57 E-value=3.8e-13 Score=94.75 Aligned_cols=164 Identities=16% Similarity=0.255 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCC-----HH-------------
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP-----SE------------- 83 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------------- 83 (215)
.+|.++|..||||||+++.+ +.+|+++++.|.+-|+.+..+.+....+.+.+...-..+ .+
T Consensus 2 ~iVGLTGgiatGKStVs~~f-~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVF-KALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHH-HHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 57999999999999999999 589999999999999999987766655555443321111 00
Q ss_pred ----------HHHHHHHHHHH--ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028025 84 ----------VTIKLLQKAME--ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (215)
Q Consensus 84 ----------~~~~~~~~~~~--~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~ 151 (215)
+..+++.+-.. ..+...+++| .|..++. .+.+ .+...|.+.||.++..+|+..| .+.
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~--~~~~----~~~~tvvV~cd~~~Ql~Rl~~R----d~l 149 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA--KLLK----ICHKTVVVTCDEELQLERLVER----DEL 149 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH--hHHh----heeeEEEEEECcHHHHHHHHHh----ccc
Confidence 00111111111 1125566666 3322332 2232 2345899999999999999988 356
Q ss_pred cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
+.++.++|+..-.. +.+..+.. .+++|++.+++++.++|...+...
T Consensus 150 se~dAe~Rl~sQmp----~~~k~~~a--~~Vi~Nng~~~~l~~qv~~v~~~~ 195 (225)
T KOG3220|consen 150 SEEDAENRLQSQMP----LEKKCELA--DVVIDNNGSLEDLYEQVEKVLALL 195 (225)
T ss_pred cHHHHHHHHHhcCC----HHHHHHhh--heeecCCCChHHHHHHHHHHHHHh
Confidence 67777788766443 22222222 478888899999999988766543
No 98
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.57 E-value=1.7e-13 Score=95.15 Aligned_cols=176 Identities=20% Similarity=0.338 Sum_probs=117.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-----------H
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------I 86 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 86 (215)
+.+..+|++.|.-+|||||.+..|.+.+.- ...... ...........+..+..++.+....++... .
T Consensus 2 ~~rg~liV~eGlDrsgKstQ~~~l~~~l~~-~~~~~~-l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~ 79 (208)
T KOG3327|consen 2 MIRGALIVLEGLDRSGKSTQCGKLVESLIP-GLDPAE-LLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHV 79 (208)
T ss_pred CCCccEEeeeccccCCceeehhHHHHHHHh-ccChHH-hhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHH
Confidence 356789999999999999999999998842 222212 222334456677777788777666665543 3
Q ss_pred HHHHHHHHccCCCeEEEeCCCCC-----------HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHH
Q 028025 87 KLLQKAMEESGNDKFLIDGFPRN-----------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET 155 (215)
Q Consensus 87 ~~~~~~~~~~~~~~~iidg~~~~-----------~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~ 155 (215)
+.+.+.+.. +-.+|+|.|..+ .+|+..+.. ..++||+++||+++++.+.+| ..+ |........
T Consensus 80 ~~i~e~l~k--g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~-gL~KPDlvlfL~v~p~~~a~r-ggf--G~Erye~v~ 153 (208)
T KOG3327|consen 80 SLIKEKLAK--GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDV-GLPKPDLVLFLDVSPEDAARR-GGF--GEERYETVA 153 (208)
T ss_pred HHHHHHHhc--CCeEEEecceecchhhhhhcCCCcchhhCCcc-CCCCCCeEEEEeCCHHHHHHh-cCc--chhHHHHHH
Confidence 455555544 778999987654 466666666 788999999999999995544 333 222222233
Q ss_pred HHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025 156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK 206 (215)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~ 206 (215)
+.++...+++... -.+..+..++|++.+++++.+.|..++++....
T Consensus 154 fqekv~~~~q~l~-----r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~~ 199 (208)
T KOG3327|consen 154 FQEKVLVFFQKLL-----RKEDLNWHVVDASKSVEKVHQQVRSLVENVLSE 199 (208)
T ss_pred HHHHHHHHHHHHH-----hccCCCeEEEecCccHHHHHHHHHHHHHHhccC
Confidence 3344333332211 013446889999999999999998888766554
No 99
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.56 E-value=6.2e-14 Score=102.84 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=98.8
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc---CC----CcHHHHHHHHHcCCCCCHH------
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GS----ENGTMIQNMIKEGKIVPSE------ 83 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~------ 83 (215)
.+.++.+|+|+||+||||||+++.|.+......+......+..... +. -..+.+......+.++...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~ 88 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY 88 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence 3557889999999999999999999764311111110111110000 00 0123344444444433211
Q ss_pred --HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec--CHHHHHHHHhhccCCCCCCcHHHHHHH
Q 028025 84 --VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC--SEEEMERRILNRNQGREDDNVETIRKR 159 (215)
Q Consensus 84 --~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~--~~e~~~~R~~~r~~~~~~~~~~~~~~~ 159 (215)
.....+...+.. +..+|+|.. ...+..+.+ . .|+.++++.+ +.+++.+|+.+| + .+..+.+.+|
T Consensus 89 YGt~~~~i~~~~~~--g~~vi~~~~---~~g~~~l~~-~--~pd~~~if~~pps~e~l~~Rl~~R--~--~~~~~~~~~R 156 (206)
T PRK14738 89 YGVPKAPVRQALAS--GRDVIVKVD---VQGAASIKR-L--VPEAVFIFLAPPSMDELTRRLELR--R--TESPEELERR 156 (206)
T ss_pred ecCCHHHHHHHHHc--CCcEEEEcC---HHHHHHHHH-h--CCCeEEEEEeCCCHHHHHHHHHHc--C--CCCHHHHHHH
Confidence 012345555543 777888853 344444544 3 3566555554 466889999987 3 3456788888
Q ss_pred HHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025 160 FKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
+..+...... .....++++|++.++++++++|...+.+.
T Consensus 157 l~~~~~e~~~-----~~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 157 LATAPLELEQ-----LPEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred HHHHHHHHhc-----ccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 8766543221 11225788999889999999999999754
No 100
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.56 E-value=4e-13 Score=94.17 Aligned_cols=109 Identities=20% Similarity=0.309 Sum_probs=63.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEEE
Q 028025 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI 103 (215)
Q Consensus 24 I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 103 (215)
|+|+|+|||||||+++.|++.+++.+++.|+++...... ...+.+... +...........+.. +... +..++.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~~---~~~~~~~~e~~~~~~-~~~~-~~~vi~ 74 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAEE---GEEGFRELEREVLLL-LLTK-ENAVIA 74 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHHH---CHHHHHHHHHHHHHH-Hhcc-CCcEEE
Confidence 789999999999999999999999999998887665321 222222111 111001111122222 2221 333333
Q ss_pred eC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 104 DG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 104 dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
.| +.........+ .....+|||++|++++.+|+..|
T Consensus 75 ~g~~~i~~~~~~~~~-----~~~~~~i~l~~~~e~~~~R~~~r 112 (154)
T cd00464 75 TGGGAVLREENRRLL-----LENGIVVWLDASPEELLERLARD 112 (154)
T ss_pred CCCCccCcHHHHHHH-----HcCCeEEEEeCCHHHHHHHhccC
Confidence 33 21222211111 23457999999999999999887
No 101
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.55 E-value=5.1e-13 Score=96.03 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCe---EeeHHHHHHHHHHcCCC----cHHHHHHHHHcCCCCC--------HHHHH
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYT---HLSAGDLLRAEIKSGSE----NGTMIQNMIKEGKIVP--------SEVTI 86 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~---~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~ 86 (215)
.+|+|+|+|||||||+++.|+..++.. .+....+.+.....+.. ..+.+......+.+.. .-. .
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ 80 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI-P 80 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC-h
Confidence 479999999999999999999987531 11110111111001111 1112222222221100 000 1
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhc
Q 028025 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES 166 (215)
Q Consensus 87 ~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~ 166 (215)
..+...+. .+..++++|.. .....+.. ... ...+|||+++.+++.+|+..| +++ ..+.+.+++......
T Consensus 81 ~~i~~~~~--~g~~vv~~g~~---~~~~~~~~-~~~-~~~~i~l~~~~~~~~~Rl~~R--~~~--~~~~~~~rl~~~~~~ 149 (179)
T TIGR02322 81 AEIDQWLE--AGDVVVVNGSR---AVLPEARQ-RYP-NLLVVNITASPDVLAQRLAAR--GRE--SREEIEERLARSARF 149 (179)
T ss_pred HHHHHHHh--cCCEEEEECCH---HHHHHHHH-HCC-CcEEEEEECCHHHHHHHHHHc--CCC--CHHHHHHHHHHHhhc
Confidence 12333333 26789999752 22233333 223 346999999999999999988 443 346677776543221
Q ss_pred chhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 167 SLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 167 ~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
. . ....+++++++.++++++++|..++..
T Consensus 150 ~------~-~~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 150 A------A-APADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred c------c-ccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 0 0 223466688888999999999988853
No 102
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=99.55 E-value=4.9e-13 Score=98.59 Aligned_cols=173 Identities=16% Similarity=0.291 Sum_probs=98.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee---HHHHHHHHH--------Hc--CCCcHHHHHHHHHcC-CCCCH---
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS---AGDLLRAEI--------KS--GSENGTMIQNMIKEG-KIVPS--- 82 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~---~~~~~~~~~--------~~--~~~~~~~~~~~~~~~-~~~~~--- 82 (215)
+-++|++.|+.|||||++|+.||+++|+.++. .|+++-... .. +......+..+..+. .....
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q 149 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQ 149 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHH
Confidence 46799999999999999999999999987775 333322111 00 000001111111111 01111
Q ss_pred --------HHHHHHHHHHHHccCCCeEEEeCCCCCH-HH-----------------HHHHHHh---cCCCCcEEEEEecC
Q 028025 83 --------EVTIKLLQKAMEESGNDKFLIDGFPRNE-EN-----------------RAAFEAV---TKIEPEFVLFFDCS 133 (215)
Q Consensus 83 --------~~~~~~~~~~~~~~~~~~~iidg~~~~~-~~-----------------~~~~~~~---~~~~~~~~i~L~~~ 133 (215)
.....++++.+.- |++|+++..|.+- -+ ...+.+. ....|.++|||+.|
T Consensus 150 ~r~y~~R~~QY~dAL~HiL~T--GQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~P 227 (393)
T KOG3877|consen 150 DRIYNCRFDQYLDALAHILNT--GQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTP 227 (393)
T ss_pred HHHHHhHHHHHHHHHHHHHhc--CCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCC
Confidence 1123445555433 9999999887651 11 1111111 33579999999999
Q ss_pred HHHHHHHHhhccCCCCCCc---HHHHHHHHHH-HhhcchhHHHHHHhcCcEEEEcC--CCCHHHHHHHHHHh
Q 028025 134 EEEMERRILNRNQGREDDN---VETIRKRFKV-FLESSLPVVQYYEAKGKVRKIDA--AKPVAEVFDAVKAV 199 (215)
Q Consensus 134 ~e~~~~R~~~r~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~id~--~~~~~e~~~~i~~~ 199 (215)
.+.+.+++++| +...+. .+...+-++. |.+. .+..++....++..|. .++.+.+++.|..+
T Consensus 228 v~~v~~~Ik~r--g~~~Eik~~s~aYL~diE~~YK~~---fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIErl 294 (393)
T KOG3877|consen 228 VNKVLENIKRR--GNTDEIKTVSEAYLKDIEESYKDS---FLREYSNHSEILAYDWTKPGDTDAVVEDIERL 294 (393)
T ss_pred cHHHHHHHHhc--CCCcceeehhHHHHHHHHHHHHHH---HHHHHhhhhheeeeecccCCCchhHHHhhhhh
Confidence 99999999998 444332 2222222221 2221 2334555556777765 45677788888654
No 103
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.54 E-value=2.4e-13 Score=97.12 Aligned_cols=164 Identities=15% Similarity=0.191 Sum_probs=97.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH----HcCCCcHHHHHHHHHcCCCCC-HHHHHHHHHHHHHc
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVP-SEVTIKLLQKAMEE 95 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 95 (215)
+.+++|.|++||||||+++.|+..++..+++.+++..... ..+....+ ....+ ...+....... ..
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~--------~~~~~~~~~~~~~~~~~-~~ 73 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTD--------EDRLPWLERLNDASYSL-YK 73 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCc--------ccchHHHHHHHHHHHHH-Hh
Confidence 3579999999999999999999999988887766432110 00111100 01111 11112222222 12
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (215)
Q Consensus 96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (215)
....++|+..+. ....+..+. ....+..+|||++|++++.+|+.+| ..+....+.+..++..+... -.
T Consensus 74 ~~~~g~iv~s~~-~~~~R~~~r--~~~~~~~~v~l~a~~~~l~~Rl~~R--~~~~~~~~vl~~Q~~~~e~~-------~~ 141 (176)
T PRK09825 74 KNETGFIVCSSL-KKQYRDILR--KSSPNVHFLWLDGDYETILARMQRR--AGHFMPPDLLQSQFDALERP-------CA 141 (176)
T ss_pred cCCCEEEEEEec-CHHHHHHHH--hhCCCEEEEEEeCCHHHHHHHHhcc--cCCCCCHHHHHHHHHHcCCC-------CC
Confidence 124566664443 333333333 3344567999999999999999999 33334455555444433311 01
Q ss_pred hcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025 176 AKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 176 ~~~~~~~id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
....++.+|++.+++++.+.+...+..++.
T Consensus 142 ~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 171 (176)
T PRK09825 142 DEHDIARIDVNHDIENVTEQCRQAVQAFRQ 171 (176)
T ss_pred CcCCeEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 123589999999999999888888876544
No 104
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.54 E-value=2.7e-13 Score=108.42 Aligned_cols=166 Identities=19% Similarity=0.229 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-----CCCCHHH------------
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEV------------ 84 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------------ 84 (215)
..|+|+|.+||||||+++.|++ +|+.++++|.+.++.+..+......+.+.+... ..+....
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4699999999999999999987 899999999999988776654333333322111 1111110
Q ss_pred ----------HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028025 85 ----------TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (215)
Q Consensus 85 ----------~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~ 154 (215)
+...+.+.+...++..+++.+.|...+. . ....+|.+||+++|.++..+|+..| ++ ...+
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~--~----~~~~~D~iI~V~ap~e~ri~Rl~~r-Rg---~s~~ 150 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES--G----MAPLFHLVVVVDADVEVRVRRLVEQ-RG---MAEA 150 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC--C----chhhCCEEEEEECCHHHHHHHHHhc-CC---CCHH
Confidence 1122222232333445555554422221 1 1234689999999999999999874 12 2334
Q ss_pred HHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (215)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~ 204 (215)
....++..... .+...... -++++++.+++++..++..+++...
T Consensus 151 ~a~~ri~~Q~~-----~e~k~~~A-D~vIdN~~s~e~l~~~v~~~l~~~~ 194 (395)
T PRK03333 151 DARARIAAQAS-----DEQRRAVA-DVWLDNSGTPDELVEAVRALWADRL 194 (395)
T ss_pred HHHHHHHhcCC-----hHHHHHhC-CEEEECCCCHHHHHHHHHHHHHHHH
Confidence 44444433211 11112222 3667788899999999887775443
No 105
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.54 E-value=4.6e-13 Score=94.24 Aligned_cols=155 Identities=20% Similarity=0.328 Sum_probs=85.1
Q ss_pred CCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEEEeC-CCC
Q 028025 30 PGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDG-FPR 108 (215)
Q Consensus 30 ~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iidg-~~~ 108 (215)
|||||||+++.||+.+++.+++.|+++.... +....+.+.. .|.........+++...+... +.++..-| ...
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~--g~si~~i~~~---~G~~~fr~~E~~~l~~l~~~~-~~VIa~GGG~~~ 74 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT--GMSISEIFAE---EGEEAFRELESEALRELLKEN-NCVIACGGGIVL 74 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH--TSHHHHHHHH---HHHHHHHHHHHHHHHHHHCSS-SEEEEE-TTGGG
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHh--CCcHHHHHHc---CChHHHHHHHHHHHHHHhccC-cEEEeCCCCCcC
Confidence 7999999999999999999999999887652 2222222221 122222233345555554432 22333323 434
Q ss_pred CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCC
Q 028025 109 NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAK 187 (215)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 187 (215)
..+....+.. ...+|||+.+++.+.+|+..+ .++....... .......+. .. ...|..... ++++.+.
T Consensus 75 ~~~~~~~L~~-----~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~-~~~~~~~~~-~R---~~~Y~~~a~-~~v~~~~ 143 (158)
T PF01202_consen 75 KEENRELLKE-----NGLVIYLDADPEELAERLRARDNRPLLKGKME-HEEILELLF-ER---EPLYEQAAD-IVVDTDG 143 (158)
T ss_dssp SHHHHHHHHH-----HSEEEEEE--HHHHHHHHHHHCTSGGTCSHHH-HHHHHHHHH-HH---HHHHHHHSS-EEEETSS
T ss_pred cHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCh-HHHHHHHHH-HH---HHHHHhcCe-EEEeCCC
Confidence 4444444443 346999999999999999877 2121222221 011111122 22 233444443 4555544
Q ss_pred C-HHHHHHHHHHhhC
Q 028025 188 P-VAEVFDAVKAVFT 201 (215)
Q Consensus 188 ~-~~e~~~~i~~~l~ 201 (215)
. +++++++|.+.|+
T Consensus 144 ~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 144 SPPEEIAEEILEFLK 158 (158)
T ss_dssp CHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhC
Confidence 4 4999999998774
No 106
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.54 E-value=6.4e-13 Score=98.58 Aligned_cols=172 Identities=22% Similarity=0.288 Sum_probs=96.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH----cCCCcH--HHHHHHHHcCC----------------
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSENG--TMIQNMIKEGK---------------- 78 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~---------------- 78 (215)
+++|.|.|++||||||+++.|++++|+.+++.|+++|.... .+.... ....+....-.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNG 83 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECC
Confidence 57999999999999999999999999999999999887433 232221 12222111100
Q ss_pred -CCCHH-------------HHHHHHHHHHHc-----cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHH
Q 028025 79 -IVPSE-------------VTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139 (215)
Q Consensus 79 -~~~~~-------------~~~~~~~~~~~~-----~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~ 139 (215)
.+... .....+++.+.. ....++|++|.. .... .....++.|||.+|.+...+
T Consensus 84 ~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~----~~~~----vl~~a~~~ifl~a~~e~R~~ 155 (225)
T PRK00023 84 EDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRD----IGTV----VFPDAELKIFLTASAEERAE 155 (225)
T ss_pred cchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecC----hheE----EeCCCCEEEEEECCHHHHHH
Confidence 00000 000112221111 124578999842 0111 33446789999999998777
Q ss_pred HHhhc--cCCCCCCcHHHHHHHHHHHhh--cchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025 140 RILNR--NQGREDDNVETIRKRFKVFLE--SSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 140 R~~~r--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~~ 202 (215)
|...+ ..+ ...+.+.+.+.+..... ..+. ...+...+..+++|+ ..+++++++.|..+++.
T Consensus 156 Rr~~~~~~~g-~~~~~~~~~~~i~~rD~~~~~r~-~~~l~~~~d~l~IDTs~l~~ee~v~~I~~~i~~ 221 (225)
T PRK00023 156 RRYKELQAKG-ISVDFEDLLAEIKERDERDSNRA-VAPLKPAEDALLLDTSGLSIEEVVEKILALVEE 221 (225)
T ss_pred HHHHHHHhcC-CCCCHHHHHHHHHHHHHhhhhcc-cccccccCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 65544 112 12334444444332211 1111 111112233477776 56999999999998853
No 107
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.53 E-value=7.4e-13 Score=112.62 Aligned_cols=171 Identities=19% Similarity=0.263 Sum_probs=100.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH----HcCCCcH--HHHHHHHHcCC-------------CC
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENG--TMIQNMIKEGK-------------IV 80 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~-------------~~ 80 (215)
..++|.|.||+||||||+++.|++++++.+++.|.++|... ..+.... ..+......-. .+
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDV 520 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEc
Confidence 35689999999999999999999999999999999999873 2232221 12222111100 00
Q ss_pred CHH-----------------HHHHHH---HHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHH
Q 028025 81 PSE-----------------VTIKLL---QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140 (215)
Q Consensus 81 ~~~-----------------~~~~~~---~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R 140 (215)
..+ .+.+.+ ++.+.. ..++|+||.- .-+ ...+..++.|||++++++..+|
T Consensus 521 ~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~--~~~~v~eGRd--igt------vv~p~a~~kifl~a~~~~Ra~R 590 (661)
T PRK11860 521 TDAIRTEAAGMGASRVSALPAVRAALLALQRSFRR--LPGLVADGRD--MGT------VIFPDAALKVFLTASAEARAER 590 (661)
T ss_pred hhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhh--CCCEEEECCC--Ccc------EECCCCCeEEEEECChhHHHHH
Confidence 000 001111 111221 4578999842 111 0456788999999999998777
Q ss_pred Hhhc--cCCCCCCcHHHHHHHHH--HHhhcchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025 141 ILNR--NQGREDDNVETIRKRFK--VFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 141 ~~~r--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~~ 202 (215)
..+. ..+. ..+.+.+.+.+. ++.+..+.. ..+......++||+ ..+++|+++.|..+++.
T Consensus 591 r~~~~~~~~~-~~~~~~~~~~~~~Rd~~d~~R~~-~pl~~~~da~~idts~~~~~~v~~~i~~~i~~ 655 (661)
T PRK11860 591 RYKQLISKGI-SANIADLLADLEARDARDTQRSV-APLKPAQDALLLDNSDLTIEQAVAQVLDWWQE 655 (661)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhHHhhcCCC-CCCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence 7653 2232 223333333221 222222221 12233345677777 66999999999999863
No 108
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.53 E-value=1.3e-13 Score=99.51 Aligned_cols=146 Identities=18% Similarity=0.313 Sum_probs=83.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC---eEeeHHHHHHHHHHcCC----------C---cHHHHH---HHHHcCCC
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGS----------E---NGTMIQ---NMIKEGKI 79 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~---~~i~~~~~~~~~~~~~~----------~---~~~~~~---~~~~~~~~ 79 (215)
.++.+|.|.|++||||||+|+.|++.|+. ..++.|+++...-.... + ..+.+. ..+..|+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 45689999999999999999999999984 47888887764311100 0 001111 11222322
Q ss_pred CCHHHHHHHHH-----HHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc---cCCCCCC
Q 028025 80 VPSEVTIKLLQ-----KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR---NQGREDD 151 (215)
Q Consensus 80 ~~~~~~~~~~~-----~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r---~~~~~~~ 151 (215)
+.... .+... +.....+..++|++|+..-.+ ..+. ...|+.||++++.+++..|...| .+|+.
T Consensus 86 v~~P~-yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr----~~~d~kIfvdtd~D~RliRri~RD~~~rg~~-- 156 (218)
T COG0572 86 VDLPV-YDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLR----DLMDLKIFVDTDADVRLIRRIKRDVQERGRD-- 156 (218)
T ss_pred ccccc-cchhcccccCCccccCCCcEEEEeccccccc--HHHH----hhcCEEEEEeCCccHHHHHHHHHHHHHhCCC--
Confidence 21111 01110 111122378999999653333 1222 23678999999999988887777 33432
Q ss_pred cHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025 152 NVETIRKRFKVFLESSLPVVQYYEAK 177 (215)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (215)
. ...+..|....+|....|-.+
T Consensus 157 -~---e~vi~qy~~~vkp~~~~fIep 178 (218)
T COG0572 157 -L---ESVIEQYVKTVRPMYEQFIEP 178 (218)
T ss_pred -H---HHHHHHHHHhhChhhhhccCc
Confidence 2 334444655666665555443
No 109
>PRK07261 topology modulation protein; Provisional
Probab=99.52 E-value=7.4e-14 Score=99.41 Aligned_cols=99 Identities=18% Similarity=0.241 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
+.|+|.|+|||||||+|+.|++.+++.+++.|.+.... .+ ...+.+.....+...+.+ ..+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~---~~w 61 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP-----NW-----------QERDDDDMIADISNFLLK---HDW 61 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc-----cc-----------ccCCHHHHHHHHHHHHhC---CCE
Confidence 46999999999999999999999999999887653211 00 122333445555555543 349
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
|+||.+........+. .+|.+|+|++|...+..|+.+|
T Consensus 62 Iidg~~~~~~~~~~l~-----~ad~vI~Ld~p~~~~~~R~lkR 99 (171)
T PRK07261 62 IIDGNYSWCLYEERMQ-----EADQIIFLNFSRFNCLYRAFKR 99 (171)
T ss_pred EEcCcchhhhHHHHHH-----HCCEEEEEcCCHHHHHHHHHHH
Confidence 9999864322222333 4788999999999999999888
No 110
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.52 E-value=1.5e-13 Score=99.19 Aligned_cols=163 Identities=20% Similarity=0.365 Sum_probs=100.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC--CeEeeHHHHHHHHHHc---CCC----cHHHHHHHHHcCCCCCHH--------
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE-------- 83 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~-------- 83 (215)
+..|+|.||+||||+|+++.|.+.+. +..+.. ...|..... +.. ..+.+......+.+++..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~-~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YG 80 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVS-HTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYG 80 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeee-ecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcc
Confidence 46799999999999999999999863 322211 222221111 111 225666666666654422
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe-cCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028025 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFKV 162 (215)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~-~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~ 162 (215)
...+.+...+.. +..+|+|..+. ....+.. ....| ++||+. .+.+++.+|+.+| ..+..+.+.+|+..
T Consensus 81 t~~~~i~~~~~~--~~~~ild~~~~---~~~~l~~-~~~~~-~vIfi~~~s~~~l~~rl~~R----~~~~~~~i~~rl~~ 149 (184)
T smart00072 81 TSKETIRQVAEQ--GKHCLLDIDPQ---GVKQLRK-AQLYP-IVIFIAPPSSEELERRLRGR----GTETAERIQKRLAA 149 (184)
T ss_pred cCHHHHHHHHHc--CCeEEEEECHH---HHHHHHH-hCCCc-EEEEEeCcCHHHHHHHHHhc----CCCCHHHHHHHHHH
Confidence 124456666644 78999997643 3344444 44444 688887 5667799999977 34456778888876
Q ss_pred HhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
..... ..+. ....+++ ++ ++++.++++...+.+
T Consensus 150 a~~~~----~~~~-~fd~~I~-n~-~l~~~~~~l~~~i~~ 182 (184)
T smart00072 150 AQKEA----QEYH-LFDYVIV-ND-DLEDAYEELKEILEA 182 (184)
T ss_pred HHHHH----hhhc-cCCEEEE-Cc-CHHHHHHHHHHHHHh
Confidence 54321 1221 1224444 43 788999999888754
No 111
>PRK06547 hypothetical protein; Provisional
Probab=99.51 E-value=4.3e-14 Score=100.32 Aligned_cols=126 Identities=16% Similarity=0.206 Sum_probs=74.5
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHH-HcCCCCCH--HHHHHHHHHH
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPS--EVTIKLLQKA 92 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~ 92 (215)
+.+..+++|+|.|++||||||+++.|++.++..+++.|+++... .........+...+ ..++.... +.........
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~ 88 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGW-HGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDW 88 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccc-ccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCc
Confidence 45678899999999999999999999999999999998876532 11111111122222 22221100 0000000000
Q ss_pred HHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 93 ~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
....++..+|++|..........+.. .....+.|||++|.+++.+|+.+|
T Consensus 89 ~~l~~~~vVIvEG~~al~~~~r~~~d--~~g~v~~I~ld~~~~vr~~R~~~R 138 (172)
T PRK06547 89 VSVEPGRRLIIEGVGSLTAANVALAS--LLGEVLTVWLDGPEALRKERALAR 138 (172)
T ss_pred EEeCCCCeEEEEehhhccHHHHHHhc--cCCCEEEEEEECCHHHHHHHHHhc
Confidence 11113568889995433333222221 122237999999999999999988
No 112
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.50 E-value=2.2e-12 Score=91.17 Aligned_cols=155 Identities=13% Similarity=0.139 Sum_probs=86.7
Q ss_pred EcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH----HcCCCcHHHHHHHHHcCCCCCH-HHHHHHHHHHHHccCCCeE
Q 028025 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVPS-EVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 27 ~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 101 (215)
.|+|||||||+++.|++.++..+++.|.+..... ..+....+. ...+. ........... ...+..+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~v 71 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDD--------DRKPWLQALNDAAFAMQ-RTNKVSL 71 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChh--------hHHHHHHHHHHHHHHHH-HcCCceE
Confidence 4999999999999999999998888865421110 001111110 00000 01111111111 2224455
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEE
Q 028025 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR 181 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (215)
|+ ........+..+. ....+..++||++|++++.+|+..|. .+.-.++-+...+..+. +.. .....++
T Consensus 72 iv-~s~~~~~~r~~~~--~~~~~~~~v~l~a~~~~l~~Rl~~R~--~~~a~~~vl~~Q~~~~e----p~~---~~e~~~~ 139 (163)
T PRK11545 72 IV-CSALKKHYRDLLR--EGNPNLSFIYLKGDFDVIESRLKARK--GHFFKTQMLVTQFETLQ----EPG---ADETDVL 139 (163)
T ss_pred EE-EecchHHHHHHHH--ccCCCEEEEEEECCHHHHHHHHHhcc--CCCCCHHHHHHHHHHcC----CCC---CCCCCEE
Confidence 55 3323333333333 33445679999999999999999992 22223444444333322 110 0112478
Q ss_pred EEcCCCCHHHHHHHHHHhhCC
Q 028025 182 KIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 182 ~id~~~~~~e~~~~i~~~l~~ 202 (215)
.+|++.+++++...+...++.
T Consensus 140 ~id~~~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 140 VVDIDQPLEGVVASTIEVIKK 160 (163)
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 899998999999999888753
No 113
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.48 E-value=6e-14 Score=94.37 Aligned_cols=106 Identities=30% Similarity=0.486 Sum_probs=59.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----cCC
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE----SGN 98 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 98 (215)
+|+|.|+|||||||+|+.|++++|+.+++.|+++........ ..+.........+.+...+.. ...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 70 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIER----------DDDEREYIDADIDLLDDILEQLQNKPDN 70 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHG----------CTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccccc----------CcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence 689999999999999999999999999999994321100000 000000011122333333322 247
Q ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
..+|+||... ... .. .....+.+||+.++.+.+..|+.+|
T Consensus 71 ~~~ii~g~~~-~~~-~~----~~~~~~~~i~l~~~~~~~~~~~~~R 110 (121)
T PF13207_consen 71 DNWIIDGSYE-SEM-EI----RLPEFDHVIYLDAPDEECRERRLKR 110 (121)
T ss_dssp -EEEEECCSC-HCC-HS----CCHHGGCEEEEEEEEHHHHHHHHHH
T ss_pred CeEEEeCCCc-cch-hh----hhhcCCEEEEEECCCHHHHHHHHHH
Confidence 7899999432 111 00 1112346899998888544444433
No 114
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.48 E-value=4.3e-12 Score=96.59 Aligned_cols=176 Identities=19% Similarity=0.264 Sum_probs=97.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCC------CcHHHHHHHHHc--CCCCCHH-H-----
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS------ENGTMIQNMIKE--GKIVPSE-V----- 84 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~-~----- 84 (215)
.+|++|+|.|++||||||+|..|++++|+..+-..|.+++.+.... .........+.. ....+++ .
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~ 169 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFE 169 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHH
Confidence 5789999999999999999999999999874433577776654311 000001111110 0011111 1
Q ss_pred ---------HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe-cCHHHHHHHHhhc--cCCCCCCc
Q 028025 85 ---------TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNR--NQGREDDN 152 (215)
Q Consensus 85 ---------~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~-~~~e~~~~R~~~r--~~~~~~~~ 152 (215)
....+...+.+ +..+|++|.-....+...+.. ..... +.+++. .+++...+|...| ...++.
T Consensus 170 ~~~~~v~~gi~~~I~~~~~~--g~s~IiEGvhl~P~~i~~~~~-~~~~~-i~~~l~i~~ee~h~~RF~~R~~~~~r~~-- 243 (301)
T PRK04220 170 RHVEPVSVGVEAVIERALKE--GISVIIEGVHIVPGFIKEKYL-ENPNV-FMFVLTLSDEEAHKARFYARARVSRRPA-- 243 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCcEEEecCCCCHHHHHHhhh-cCCCE-EEEEEEECCHHHHHHHHHHHHhhhCCch--
Confidence 12333333333 899999997665666555443 44443 344444 5668899999888 222322
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
+...+.+...+.....+.+.....+ +-+||+. ++++.++.+.+.+.+.
T Consensus 244 -~~y~~~~~~ir~iq~~l~~~a~~~~-ip~I~n~-~i~~s~~~~~~~i~~~ 291 (301)
T PRK04220 244 -ERYLKNFEIIREINDYIVEKAKKHG-VPVIENI-SIEETVDKILEIITER 291 (301)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHhC-CCeecCc-cHHHHHHHHHHHHHHH
Confidence 2222333333333333444444433 4556663 6777777666655443
No 115
>PTZ00301 uridine kinase; Provisional
Probab=99.47 E-value=6e-13 Score=97.33 Aligned_cols=169 Identities=18% Similarity=0.238 Sum_probs=85.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHHHHHHHH-----c-----CCCcH---HHHH---HHHHcC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIK-----S-----GSENG---TMIQ---NMIKEG 77 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~~~~~~~-----~-----~~~~~---~~~~---~~~~~~ 77 (215)
.++|.|.|+|||||||+|+.|+++++ ..+++.|++++.... . +.+.. +.+. ..+..+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 47899999999999999999988872 235666666543210 0 00000 0011 111222
Q ss_pred CCCCHHH----HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc---cCCCCC
Q 028025 78 KIVPSEV----TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR---NQGRED 150 (215)
Q Consensus 78 ~~~~~~~----~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r---~~~~~~ 150 (215)
..+.... ..........-.+..++|+||...-.. ..+.. ..|+.||++++.+++..|...| ++|+
T Consensus 83 ~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~----l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~-- 154 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRN----EMDCLIFVDTPLDICLIRRAKRDMRERGR-- 154 (210)
T ss_pred CcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHH----hCCEEEEEeCChhHHHHHHHhhhHHhcCC--
Confidence 1111000 000001111111367889999643111 12222 3578999999999999999888 2333
Q ss_pred CcHHHHHHHHHHHhhcchhHHHHHHhcC---cEEEEcCCCCHHHHHHHHHHhhC
Q 028025 151 DNVETIRKRFKVFLESSLPVVQYYEAKG---KVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
..+.+.++ |.....+....|-.+. .-+++......+..+..+...+.
T Consensus 155 -~~e~v~~~---~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~ 204 (210)
T PTZ00301 155 -TFESVIEQ---YEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLN 204 (210)
T ss_pred -CHHHHHHH---HHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHH
Confidence 34444433 4443344443343221 22444444455555554444443
No 116
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.46 E-value=1.4e-11 Score=87.08 Aligned_cols=164 Identities=15% Similarity=0.169 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC--CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC-CCC-HHHHHHHHHHHHHcc-
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-IVP-SEVTIKLLQKAMEES- 96 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~- 96 (215)
.+|++.|+|.|||||+|+.|.+.+. |.+++.|.+..............+. +-.... .-+ .......+...+...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~iaa~a 80 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLE-PAGDRPDGGPLFRRLYAAMHAAIAAMA 80 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEE-EETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCcccc-ccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999995 6788887776654322110000000 000000 000 011122222222221
Q ss_pred -CCCeEEEeCCCCCHHH-HHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHH
Q 028025 97 -GNDKFLIDGFPRNEEN-RAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY 174 (215)
Q Consensus 97 -~~~~~iidg~~~~~~~-~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (215)
.|..||+|.......+ ...|..+....+-++|-+.||.+++.+|-..| +....-. ... .+...... ..|
T Consensus 81 ~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~R--gDR~~G~---a~~--q~~~Vh~~--~~Y 151 (174)
T PF07931_consen 81 RAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERAR--GDRPIGL---AAW--QAEHVHEG--GRY 151 (174)
T ss_dssp HTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHH--TSSSTTH---HHH--HTTGGGTT-----
T ss_pred hCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhc--CCcchHH---HHH--HHhhcccC--CCC
Confidence 2889999987666664 55664434456678999999999999999988 2211111 111 11111111 112
Q ss_pred HhcCcEEEEcC-CCCHHHHHHHHHHhh
Q 028025 175 EAKGKVRKIDA-AKPVAEVFDAVKAVF 200 (215)
Q Consensus 175 ~~~~~~~~id~-~~~~~e~~~~i~~~l 200 (215)
. +.+|+ ..+++|.++.|.+.+
T Consensus 152 ----D-leVDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 152 ----D-LEVDTSATSPEECAREILARL 173 (174)
T ss_dssp ----S-EEEETTSS-HHHHHHHHHTT-
T ss_pred ----C-EEEECCCCCHHHHHHHHHHHh
Confidence 2 45555 679999999998776
No 117
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.46 E-value=1.3e-12 Score=94.10 Aligned_cols=163 Identities=17% Similarity=0.233 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc---CCC----cHHHHHHHHHcCCCCCH--------HHHH
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPS--------EVTI 86 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~--------~~~~ 86 (215)
.+|+|.||+||||||+++.|++.++..++......+..... +.. ....+......+.++.. ....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK 81 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence 57999999999999999999998765444332222221110 000 11223333333332211 1113
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhc
Q 028025 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES 166 (215)
Q Consensus 87 ~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~ 166 (215)
..+...+.+ +..+|+|.. ......+.. ....+..++++.++.+.+.+|+..| + .+..+.+.+|+......
T Consensus 82 ~~i~~~~~~--g~~vi~d~~---~~~~~~~~~-~~~~~~~i~~~~~~~e~~~~Rl~~r--~--~~~~~~i~~rl~~~~~~ 151 (180)
T TIGR03263 82 SPVEEALAA--GKDVLLEID---VQGARQVKK-KFPDAVSIFILPPSLEELERRLRKR--G--TDSEEVIERRLAKAKKE 151 (180)
T ss_pred HHHHHHHHC--CCeEEEECC---HHHHHHHHH-hCCCcEEEEEECCCHHHHHHHHHHc--C--CCCHHHHHHHHHHHHHH
Confidence 445555543 788999853 344444554 4444445666677789999999987 3 34556777787665432
Q ss_pred chhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025 167 SLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 167 ~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
. . +......++.| + +.++++.++..++.
T Consensus 152 ~----~-~~~~~d~~i~n-~-~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 152 I----A-HADEFDYVIVN-D-DLEKAVEELKSIIL 179 (180)
T ss_pred H----h-ccccCcEEEEC-C-CHHHHHHHHHHHHh
Confidence 1 1 12223344544 3 78999999988764
No 118
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.45 E-value=7.8e-12 Score=90.29 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=87.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHHHHHHHcCCCcHH-HHHHHHHcCCCCCHHHHHHHHHHH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKA 92 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 92 (215)
.++.+|+|+|+|||||||+++.|+..+ + ..+++.|+ ++..+..+..+.. ....... . ...+...
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~-~r~~l~~~~~~~~~~~~~~~~--------~-~~~~~~~ 85 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN-VRHGLNKDLGFSEEDRKENIR--------R-IGEVAKL 85 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH-HHhhhccccCCCHHHHHHHHH--------H-HHHHHHH
Confidence 567899999999999999999999987 2 34555544 4443322211111 0000000 0 1112222
Q ss_pred HHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhH
Q 028025 93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV 170 (215)
Q Consensus 93 ~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (215)
+.. .|..+|+|+.......+..+..+....+..++||++|.+++.+|...+ ...+.+ .+..+.. .
T Consensus 86 ~~~-~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~--------~~~~l~~----~ 152 (184)
T TIGR00455 86 FVR-NGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNG--------EIKGFTG----I 152 (184)
T ss_pred HHc-CCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcC--------CccCccc----c
Confidence 222 388999998655566666666532223456899999999999993211 000000 0000100 1
Q ss_pred HHHHHh-cCcEEEEcC-CCCHHHHHHHHHHhh
Q 028025 171 VQYYEA-KGKVRKIDA-AKPVAEVFDAVKAVF 200 (215)
Q Consensus 171 ~~~~~~-~~~~~~id~-~~~~~e~~~~i~~~l 200 (215)
...|.. ....++||+ ..++++++++|...+
T Consensus 153 ~~~y~~p~~adl~Idt~~~~~~~~~~~i~~~l 184 (184)
T TIGR00455 153 DSPYEAPENPEVVLDTDQNDREECVGQIIEKL 184 (184)
T ss_pred cCCCCCCCCCcEEEECCCCCHHHHHHHHHHhC
Confidence 111332 223467765 569999999887653
No 119
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.45 E-value=1.9e-12 Score=111.03 Aligned_cols=174 Identities=17% Similarity=0.237 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc----CCCcHH----------HHHHHHHc-----------
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS----GSENGT----------MIQNMIKE----------- 76 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~----~~~~~~----------~~~~~~~~----------- 76 (215)
++|.|.|||||||||+|+.||+++|+.+++.|.++|..... +..... .+......
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS 81 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence 37999999999999999999999999999999999875421 221111 11111111
Q ss_pred ------CCCCCHHH-----------------H---HHHHHHHHH-ccC-------CCeEEEeCCCCCHHHHHHHHHhcCC
Q 028025 77 ------GKIVPSEV-----------------T---IKLLQKAME-ESG-------NDKFLIDGFPRNEENRAAFEAVTKI 122 (215)
Q Consensus 77 ------~~~~~~~~-----------------~---~~~~~~~~~-~~~-------~~~~iidg~~~~~~~~~~~~~~~~~ 122 (215)
+..+...+ + ....++.+. ..+ +.++|+||.- ..+ ...+
T Consensus 82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~~~~~~~~~~~~~~~v~eGRd--igt------vv~p 153 (712)
T PRK09518 82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRAYIAREASADSFSGGLGIVAEGRD--ITT------VVAP 153 (712)
T ss_pred cEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCccccccccCcEEEecCc--cce------EEec
Confidence 00000000 0 111122221 111 2389999842 111 1456
Q ss_pred CCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH--HHhhcchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHh
Q 028025 123 EPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK--VFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAV 199 (215)
Q Consensus 123 ~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~ 199 (215)
..++-|||+++.++..+|...+ ... .+.+.+.+.+. ++.+. +.. .++......+++|+ ..+++++++.|..+
T Consensus 154 ~a~~K~~l~A~~~~Ra~Rr~~~--~~~-~~~~~~~~~~~~Rd~~d~-R~~-~pl~~~~da~~idts~~~~~~v~~~i~~~ 228 (712)
T PRK09518 154 DAEVRILLTAREEVRQARRSGQ--DRS-ETPGVVLEDVAARDEADS-KVT-SFLSAADGVTTLDNSDLDFDETLDLLIGL 228 (712)
T ss_pred CCCeEEEEECCHHHHHHHHHHh--hhc-CCHHHHHHHHHHHhhhcc-ccc-CCCCCCCCeEEEECCCCCHHHHHHHHHHH
Confidence 7889999999999988888766 111 33333333332 22233 222 22333345677776 78999999999999
Q ss_pred hCCCccccc
Q 028025 200 FTPKDEKVK 208 (215)
Q Consensus 200 l~~~~~~~~ 208 (215)
++.......
T Consensus 229 i~~~~~~~~ 237 (712)
T PRK09518 229 VEDAIEEQE 237 (712)
T ss_pred HHhhhhhhh
Confidence 987766543
No 120
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.45 E-value=3.6e-12 Score=109.78 Aligned_cols=44 Identities=25% Similarity=0.407 Sum_probs=39.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK 61 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~ 61 (215)
+...++|.|.|||||||||+|+.||+.+++.+++.|.++|....
T Consensus 31 ~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~ 74 (863)
T PRK12269 31 PMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTL 74 (863)
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHH
Confidence 33446999999999999999999999999999999999998743
No 121
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.45 E-value=7.7e-12 Score=91.86 Aligned_cols=168 Identities=18% Similarity=0.255 Sum_probs=94.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc---CCC----cHHHHHHHHHcCCCCCH--------H
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPS--------E 83 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~--------~ 83 (215)
.++.+|+|.|++||||||+++.|++.++..++......+..... +.. ..+.+......+.+... .
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 82 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG 82 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence 46778999999999999999999998763222222221111000 000 11222222222222110 0
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028025 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF 163 (215)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 163 (215)
.....+...+.. +..+|+|..+ .....+.. ....+..+++..++.+++.+|+..| + .+..+.+.+|+..+
T Consensus 83 ~~~~~i~~~l~~--g~~vi~dl~~---~g~~~l~~-~~~~~~~I~i~~~s~~~l~~Rl~~R--~--~~~~~~i~~rl~~~ 152 (205)
T PRK00300 83 TPRSPVEEALAA--GKDVLLEIDW---QGARQVKK-KMPDAVSIFILPPSLEELERRLRGR--G--TDSEEVIARRLAKA 152 (205)
T ss_pred CcHHHHHHHHHc--CCeEEEeCCH---HHHHHHHH-hCCCcEEEEEECcCHHHHHHHHHhc--C--CCCHHHHHHHHHHH
Confidence 112334444443 7788888543 33344444 3333333444466788999999987 3 35567888888776
Q ss_pred hhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025 164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
..... .+.. ...+++|+ +++++++++...+...
T Consensus 153 ~~~~~----~~~~-~d~vi~n~--~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 153 REEIA----HASE-YDYVIVND--DLDTALEELKAIIRAE 185 (205)
T ss_pred HHHHH----hHHh-CCEEEECC--CHHHHHHHHHHHHHHH
Confidence 54322 2222 23455543 7999999999988765
No 122
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.44 E-value=8e-12 Score=89.49 Aligned_cols=161 Identities=18% Similarity=0.209 Sum_probs=86.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHH-HHHHHHcCCCCCHHHHHHHHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTM-IQNMIKEGKIVPSEVTIKLLQKAM 93 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 93 (215)
++.+|+|+|+|||||||+++.|+..+. ..+++.|.+ +..+..+...... ...... ....+...+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r~~~~~---------~~~~~a~~~ 72 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDRDTNIR---------RIGFVANLL 72 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhHHHHHH---------HHHHHHHHH
Confidence 467999999999999999999999883 456666543 4433322111100 000000 011222222
Q ss_pred HccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHH
Q 028025 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY 173 (215)
Q Consensus 94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (215)
.. .+.++++|+..........+.. .. ....++||++|.+++.+|.. | +.. .......+..+.....++
T Consensus 73 ~~-~g~~vi~~~~~~~~~~~~~l~~-~~-~~~~~v~l~~~~e~~~~R~~-~--~l~---~~~~~~~i~~~~~~~~~~--- 140 (175)
T PRK00889 73 TR-HGVIVLVSAISPYRETREEVRA-NI-GNFLEVFVDAPLEVCEQRDV-K--GLY---AKARAGEIKHFTGIDDPY--- 140 (175)
T ss_pred Hh-CCCEEEEecCCCCHHHHHHHHh-hc-CCeEEEEEcCCHHHHHHhCc-c--cHH---HHHHcCCCCCCcccCCCC---
Confidence 22 3677888875333344444444 32 23459999999999999952 2 100 000000000011111121
Q ss_pred HH-hcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 174 YE-AKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 174 ~~-~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
|. ....+.+.+++.++++++++|...+..
T Consensus 141 ~~p~~ad~~i~~~~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 141 EPPLNPEVECRTDLESLEESVDKVLQKLEE 170 (175)
T ss_pred CCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 22 123455555677999999999998853
No 123
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.44 E-value=2.7e-12 Score=97.36 Aligned_cols=158 Identities=16% Similarity=0.225 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (215)
++|+|+|.|||||||+|+.|++.+. ..+++.+++ . +.... +.....+... ...+...+.+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~-~--~~~~~-y~~~~~Ek~~------R~~l~s~v~r~ls~- 70 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSL-G--IDRND-YADSKKEKEA------RGSLKSAVERALSK- 70 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHH-H---TTSS-S--GGGHHHH------HHHHHHHHHHHHTT-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccc-c--cchhh-hhchhhhHHH------HHHHHHHHHHhhcc-
Confidence 4799999999999999999999863 345554333 2 11111 1100000000 11224455555543
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHH
Q 028025 97 GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY 174 (215)
Q Consensus 97 ~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (215)
...||+|+-......+..+..+ ....+..+||+.++.+.+.+|..+| +......+++..++..-.+.-.+ ...|
T Consensus 71 -~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R--~~~~~~~~e~i~~m~~RfE~P~~-~nrW 146 (270)
T PF08433_consen 71 -DTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKR--PEPERYPEETIDDMIQRFEEPDP-KNRW 146 (270)
T ss_dssp --SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHT--T-S--S-HHHHHHHHHH---TTS-S-GG
T ss_pred -CeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhcc--CCCCCCCHHHHHHHHHHhcCCCC-CCCc
Confidence 6899999855544444444433 4555567999999999999999998 33322333333333221111111 1223
Q ss_pred HhcCcEEEEcC---CCCHHHHHHHH
Q 028025 175 EAKGKVRKIDA---AKPVAEVFDAV 196 (215)
Q Consensus 175 ~~~~~~~~id~---~~~~~e~~~~i 196 (215)
+.+ .+.++. ..+.+++++.+
T Consensus 147 D~p--lf~i~~~~~~~~~~~I~~~l 169 (270)
T PF08433_consen 147 DSP--LFTIDSSDEELPLEEIWNAL 169 (270)
T ss_dssp GS---SEEEE-TTS---HHHHHHHH
T ss_pred cCC--eEEEecCCCCCCHHHHHHHH
Confidence 333 455552 44566777776
No 124
>PRK06696 uridine kinase; Validated
Probab=99.44 E-value=7.3e-13 Score=98.47 Aligned_cols=121 Identities=19% Similarity=0.230 Sum_probs=69.4
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh---CCeE--eeHHHHHHHHHHc---C--CC--------cHHHHHHHHHc--
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GYTH--LSAGDLLRAEIKS---G--SE--------NGTMIQNMIKE-- 76 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~---~~~~--i~~~~~~~~~~~~---~--~~--------~~~~~~~~~~~-- 76 (215)
..+++.+|+|.|++||||||+|+.|++.+ |..+ ++.|+++...... + .. ..+.+.+.+..
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l 97 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPL 97 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhc
Confidence 35678999999999999999999999999 4444 4577776543221 0 00 01122222111
Q ss_pred --CCC--CC---HHHHH-HHHHHHHH-ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 77 --GKI--VP---SEVTI-KLLQKAME-ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 77 --~~~--~~---~~~~~-~~~~~~~~-~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
+.. +. ..... ........ ..++..+|+||..... ..+. ...|++|||++|.+++.+|+..|
T Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~---~~~~----~~~d~~i~v~~~~e~~~~R~~~R 167 (223)
T PRK06696 98 GPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLR---PELR----DLWDYKIFLDTDFEVSRRRGAKR 167 (223)
T ss_pred cCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhh---hhHH----hhCCEEEEEECCHHHHHHHHHHh
Confidence 110 00 01001 11111111 1225688999853211 1222 24578999999999999999988
No 125
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.43 E-value=3.2e-11 Score=92.17 Aligned_cols=150 Identities=19% Similarity=0.244 Sum_probs=82.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--cC
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--SG 97 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 97 (215)
...+|+|+|++||||||+++.|. ..|+.+++. .+......+++..... ..
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~---------------------------~~~~L~~~l~~~~~~~~~~~ 56 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN---------------------------LPPSLLPKLVELLAQSGGIR 56 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC---------------------------cCHHHHHHHHHHHHhcCCCC
Confidence 34589999999999999999995 568766632 1122222232222221 12
Q ss_pred CCeEEEeCCCCCH--HHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHH
Q 028025 98 NDKFLIDGFPRNE--ENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY 174 (215)
Q Consensus 98 ~~~~iidg~~~~~--~~~~~~~~~-~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (215)
.-.+++|...... .....+..+ .......+|||+++.+++.+|+..+.+.++-.....+.+.+...+....+ +
T Consensus 57 ~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~p----l 132 (288)
T PRK05416 57 KVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAP----L 132 (288)
T ss_pred CeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhh----H
Confidence 4577888632211 111222222 11223358999999999999997531122211111222222222222222 2
Q ss_pred HhcCcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025 175 EAKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 175 ~~~~~~~~id~-~~~~~e~~~~i~~~l~~ 202 (215)
..... ++||+ +.+++++.++|...+..
T Consensus 133 ~~~AD-ivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 133 RERAD-LVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred HHhCC-EEEECCCCCHHHHHHHHHHHHhc
Confidence 23333 44555 66999999999998865
No 126
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.42 E-value=9.9e-12 Score=101.90 Aligned_cols=102 Identities=22% Similarity=0.364 Sum_probs=78.9
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (215)
.+.++.+|++.|+|||||||+|+.+++..++.+++.|++- . ...........+.+
T Consensus 365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg-~-----------------------~~~~~~~a~~~L~~- 419 (526)
T TIGR01663 365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG-S-----------------------TQNCLTACERALDQ- 419 (526)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH-H-----------------------HHHHHHHHHHHHhC-
Confidence 4567899999999999999999999999999999997641 1 01123445555544
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 97 GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 97 ~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
+..+|+|+.......+..|..+ ....+-.++++++|.+++.+|+..|
T Consensus 420 -G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R 468 (526)
T TIGR01663 420 -GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFR 468 (526)
T ss_pred -CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhh
Confidence 7899999988777777766665 3333556899999999999999988
No 127
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.40 E-value=3.4e-12 Score=93.84 Aligned_cols=174 Identities=14% Similarity=0.201 Sum_probs=87.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHH-----Hc-CCCc-------HHHHHHH---HHcCC
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEI-----KS-GSEN-------GTMIQNM---IKEGK 78 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~-----~~-~~~~-------~~~~~~~---~~~~~ 78 (215)
++++.+|+|.|++||||||+++.|+..++ ..+++.|+++.... .. +..+ ...+.+. +..+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 45678999999999999999999999885 56677766543210 00 0000 0001111 11111
Q ss_pred CCCHHHH----HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcH
Q 028025 79 IVPSEVT----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNV 153 (215)
Q Consensus 79 ~~~~~~~----~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~ 153 (215)
....... ...........+...+|+||.+...+ ..+. ..+|.+|||+++.+++..|+..| ...+. ...
T Consensus 83 ~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~--~~~~----~~~d~~I~v~~~~~~~l~R~~~R~~~~rg-~~~ 155 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFD--ERLR----DLMDLKIFVDTPLDIRLIRRIERDINERG-RSL 155 (207)
T ss_pred CEecccceeecCCCCCceEEeCCCCEEEEEehhhhch--HhHH----HhCCEEEEEECChhHHHHHHHHHHHHhhC-CCH
Confidence 1100000 00000000011256889998653222 1122 24778999999999999998877 11111 222
Q ss_pred HHHHHHHHHHhhcchhHHHHHHhc---CcEEEEcCCCCHHHHHHHHHHhhC
Q 028025 154 ETIRKRFKVFLESSLPVVQYYEAK---GKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
+...++ |.....+....+... ..-+++++....+..++.+...++
T Consensus 156 ~~~~~~---~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~ 203 (207)
T TIGR00235 156 DSVIDQ---YRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIK 203 (207)
T ss_pred HHHHHH---HHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHH
Confidence 333333 222222222112111 123566666666777766655543
No 128
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.40 E-value=5.8e-12 Score=87.14 Aligned_cols=112 Identities=20% Similarity=0.202 Sum_probs=64.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHH-HHHHHHcCCCCCHHHHHHHHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTM-IQNMIKEGKIVPSEVTIKLLQKAM 93 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 93 (215)
++.+|+|+|.|||||||+|+.|.++|. ..+++. |.+|..+..+-.+... -...+. ....+...+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e~~r---------r~~~~A~ll 70 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREENIR---------RIAEVAKLL 70 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHHHHH---------HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHHHHH---------HHHHHHHHH
Confidence 578999999999999999999999983 455655 5555543332222111 001111 123333444
Q ss_pred HccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh
Q 028025 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142 (215)
Q Consensus 94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~ 142 (215)
.. .|..+|+...-...+.+............+.|||+||.+++.+|-.
T Consensus 71 ~~-~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~ 118 (156)
T PF01583_consen 71 AD-QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDP 118 (156)
T ss_dssp HH-TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTT
T ss_pred Hh-CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCc
Confidence 43 3888888864444444444444212224579999999999999954
No 129
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=99.40 E-value=6.9e-11 Score=94.60 Aligned_cols=177 Identities=14% Similarity=0.136 Sum_probs=93.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcH---------HHHHHHHHcCC------CCCHH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG---------TMIQNMIKEGK------IVPSE 83 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~------~~~~~ 83 (215)
.+|.+|++.|+|||||||++..|++++++..+-..|.+++.+..-.... .........+. .....
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~ 332 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAE 332 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHH
Confidence 4699999999999999999999999999975544466766554421100 00011111111 01111
Q ss_pred H--------------HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCC
Q 028025 84 V--------------TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGR 148 (215)
Q Consensus 84 ~--------------~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~~~ 148 (215)
. ...+++..+.. +..+|+||.-........... .... .+.+.+.+ +++...+|+..|....
T Consensus 333 vi~Gf~~q~~~V~~gi~~vI~r~l~e--G~SvIIEGVHl~P~~i~~~~~-~~~~-~i~flv~isdeeeH~~Rf~~Ra~~~ 408 (475)
T PRK12337 333 VLRGFRDQVQQVAVGLGAIQERSAQE--GTSLVLEGVHLVPGYLRHPYQ-AGAL-VVPMLVTLPDEALHRRRFELRDRET 408 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCeEEEECCCCCHHHHHHHHh-cCCc-eEEEEEEECCHHHHHHHHHHHhhhc
Confidence 1 13334444443 899999995433333332221 2222 22345555 5667899999881111
Q ss_pred C-CCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025 149 E-DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 149 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
. ....+...+.+...+....-+....... ++-+|++. ++++.++.+.+.+.
T Consensus 409 ~~~r~~~ky~~~f~~IR~IQdyLv~~A~~~-~ipvI~n~-nid~tv~~~l~~i~ 460 (475)
T PRK12337 409 GASRPRERYLRHFEEIRLIQDHLLRLARQE-GVPVLPGE-DLDESIDKALEVVL 460 (475)
T ss_pred cCCCchhHHHHhHHHHHHHHHHHHHHHHHc-CCCeecCc-cHHHHHHHHHHHHH
Confidence 1 1123344444444444333344433333 34456553 66666666655544
No 130
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.39 E-value=1.6e-11 Score=100.56 Aligned_cols=151 Identities=21% Similarity=0.282 Sum_probs=85.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
|.|+|+|+|||||||+++.|++.+++.+++.|+.+.+. .+....+.+.. .+.....+.-.+.+++.... ...+
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~--~g~~i~~i~~~---~Ge~~fr~~E~~~l~~l~~~--~~~V 73 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR--EGRSVRRIFEE---DGEEYFRLKEKELLRELVER--DNVV 73 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH--cCCCHHHHHHH---hhhHHHHHHHHHHHHHHhhc--CCEE
Confidence 36999999999999999999999999999999887663 23222222221 22222223333444443222 2223
Q ss_pred EEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCC--CcHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025 102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED--DNVETIRKRFKVFLESSLPVVQYYEAK 177 (215)
Q Consensus 102 iidg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (215)
+-.| .......+..+.. ..+|||+++.+++.+|+..+ +|+- ...+.+ ...+....++ |...
T Consensus 74 is~Gggvv~~~~~r~~l~~------~~vI~L~as~e~l~~Rl~~~--~RPLl~~~~e~l----~~L~~~R~~l---Y~~~ 138 (488)
T PRK13951 74 VATGGGVVIDPENRELLKK------EKTLFLYAPPEVLMERVTTE--NRPLLREGKERI----REIWERRKQF---YTEF 138 (488)
T ss_pred EECCCccccChHHHHHHhc------CeEEEEECCHHHHHHHhccC--CCCCccccHHHH----HHHHHHHHHH---Hhcc
Confidence 3233 1222233333322 35899999999999999876 4442 122222 2222222333 4332
Q ss_pred CcEEEEcC-CCCHHHHHHHHH
Q 028025 178 GKVRKIDA-AKPVAEVFDAVK 197 (215)
Q Consensus 178 ~~~~~id~-~~~~~e~~~~i~ 197 (215)
..+|. +.++++++++|.
T Consensus 139 ---~~IDt~~~s~~e~~~~iv 156 (488)
T PRK13951 139 ---RGIDTSKLNEWETTALVV 156 (488)
T ss_pred ---cEEECCCCCHHHHHHHHH
Confidence 34555 567777776663
No 131
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.39 E-value=2.3e-11 Score=88.80 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=83.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHH--HH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL--LQ 90 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 90 (215)
+.++.+|+|+|++||||||+++.|+..+ +..+++.|++. ..+....... .....+....+ +.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~-~~~~~~~~~~----------~~~~~~~~~~l~~~a 89 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR-HGLCSDLGFS----------DADRKENIRRVGEVA 89 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH-hhhhhcCCcC----------cccHHHHHHHHHHHH
Confidence 3578899999999999999999999987 24556554433 2211111000 00001111111 12
Q ss_pred HHHHccCCCeEEEeCCCC-CHHHHHHHHHhcCCCCcE-EEEEecCHHHHHHHHhhc---cCCCCCCcHHHHHHHHHHHhh
Q 028025 91 KAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEF-VLFFDCSEEEMERRILNR---NQGREDDNVETIRKRFKVFLE 165 (215)
Q Consensus 91 ~~~~~~~~~~~iidg~~~-~~~~~~~~~~~~~~~~~~-~i~L~~~~e~~~~R~~~r---~~~~~~~~~~~~~~~~~~~~~ 165 (215)
..+.. .+..+|. ++.. ....+..+.. ......+ +|||++|.+++.+|.. | ...+.++ . ..+..
T Consensus 90 ~~~~~-~G~~VI~-~~~~~~~~~R~~~r~-~l~~~~~i~V~L~~~~e~~~~R~~-r~l~~~~~~~~-~-------~~l~~ 157 (198)
T PRK03846 90 KLMVD-AGLVVLT-AFISPHRAERQMVRE-RLGEGEFIEVFVDTPLAICEARDP-KGLYKKARAGE-I-------RNFTG 157 (198)
T ss_pred HHHhh-CCCEEEE-EeCCCCHHHHHHHHH-HcccCCEEEEEEcCCHHHHHhcCc-hhHHHHhhcCC-c-------cCccc
Confidence 22222 2555554 4443 3455555555 2222234 7999999999999922 2 0011000 0 01111
Q ss_pred cchhHHHHHHhcC-cEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025 166 SSLPVVQYYEAKG-KVRKIDA-AKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 166 ~~~~~~~~~~~~~-~~~~id~-~~~~~e~~~~i~~~l~~ 202 (215)
. ...|..+. ..++||+ +.++++++++|...+..
T Consensus 158 ~----r~~Y~~p~~ad~~Idt~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 158 I----DSVYEAPESPEIHLDTGEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred c----cccCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 1 11144221 2356664 67999999999988854
No 132
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.38 E-value=3.6e-12 Score=86.51 Aligned_cols=106 Identities=28% Similarity=0.403 Sum_probs=57.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc-CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH----ccCC
Q 028025 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME----ESGN 98 (215)
Q Consensus 24 I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 98 (215)
|+|.|+|||||||+|+.|+++++ +.+...... +......-.................++..... ...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG-------DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKG 73 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC-------HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CEEECCCCCCHHHHHHHHHHHHC-------cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccC
Confidence 78999999999999999999983 222222111 11111000011122233344443333332222 2347
Q ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCCcEE-EEEecCHHHHHHHHhhc
Q 028025 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFV-LFFDCSEEEMERRILNR 144 (215)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~-i~L~~~~e~~~~R~~~r 144 (215)
..+|+|+....... ....... |+|+||++++.+|+.+|
T Consensus 74 ~~~iid~~~~~~~~--------~~~~~~~~i~L~~~~e~~~~R~~~R 112 (129)
T PF13238_consen 74 RNIIIDGILSNLEL--------ERLFDIKFIFLDCSPEELRKRLKKR 112 (129)
T ss_dssp SCEEEEESSEEECE--------TTEEEESSEEEE--HHHHHHHHHCT
T ss_pred CcEEEecccchhcc--------cccceeeEEEEECCHHHHHHHHHhC
Confidence 88999986532211 0111122 99999999999999988
No 133
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.38 E-value=1.2e-11 Score=103.07 Aligned_cols=165 Identities=15% Similarity=0.119 Sum_probs=89.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC------eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY------THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (215)
.++.+|+|+|+|||||||+++.|++.++. .+++.| .++..+.....+.+.-..... .....+...
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er~~~~--------~~l~~~a~~ 460 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDRDLNI--------LRIGFVASE 460 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHHHHHH--------HHHHHHHHH
Confidence 45789999999999999999999999985 677764 455543322211111100000 001112222
Q ss_pred HHccCCCeEEEeCCCCCHHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHH
Q 028025 93 MEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV 171 (215)
Q Consensus 93 ~~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (215)
+... |.++|+|........+..+..+ ......++|||++|.+++.+|..+. -..... ...+..+.....+
T Consensus 461 v~~~-Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~---Ll~~~~---~~~i~~l~~~R~~-- 531 (568)
T PRK05537 461 ITKN-GGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKG---LYAKAR---EGKIKGFTGISDP-- 531 (568)
T ss_pred HHhC-CCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcccc---ccccch---hchhhcccccccc--
Confidence 3222 7888888643323333333332 1111225899999999999996432 000000 0112222221122
Q ss_pred HHHHhcCcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025 172 QYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 172 ~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~~ 202 (215)
+|......++||+ ..++++++++|...+..
T Consensus 532 -yy~p~~Adl~IDt~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 532 -YEPPANPELVIDTTNVTPDECAHKILLYLEE 562 (568)
T ss_pred -ccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 2321222366666 46999999999988764
No 134
>PRK07667 uridine kinase; Provisional
Probab=99.38 E-value=8.7e-12 Score=90.58 Aligned_cols=131 Identities=16% Similarity=0.211 Sum_probs=75.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHc---C-CCcH---------HHHH----HHHHc
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKS---G-SENG---------TMIQ----NMIKE 76 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~---~-~~~~---------~~~~----~~~~~ 76 (215)
+.+.+|.|.|+|||||||+|+.|++.++ ..+++.|+++...... + .... ..+. ..+..
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~ 94 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQN 94 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcC
Confidence 4558999999999999999999999884 5688898877654322 1 1110 0010 11111
Q ss_pred CCCCCHHHH----HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025 77 GKIVPSEVT----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (215)
Q Consensus 77 ~~~~~~~~~----~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~ 152 (215)
+..+..... ...........+...+|+||..... ..+.. .+|.+|++++|+++..+|+.+| ....
T Consensus 95 ~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~---~~~~~----~~d~~v~V~~~~~~~~~R~~~r----~~~~ 163 (193)
T PRK07667 95 ETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQR---KEWRD----FFHYMVYLDCPRETRFLRESEE----TQKN 163 (193)
T ss_pred CCeEEEeeeccccccccccceecCCCCEEEEEehhhhh---hhHHh----hceEEEEEECCHHHHHHHHhcc----cHhH
Confidence 111110000 0001011111125789999964211 22222 3689999999999999999976 3334
Q ss_pred HHHHHHHH
Q 028025 153 VETIRKRF 160 (215)
Q Consensus 153 ~~~~~~~~ 160 (215)
.+..++|+
T Consensus 164 ~~~~~~r~ 171 (193)
T PRK07667 164 LSKFKNRY 171 (193)
T ss_pred HHHHHHHh
Confidence 44444443
No 135
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.36 E-value=1.3e-11 Score=90.15 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=29.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh---CCeEeeHHHHHH
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLR 57 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~~~~~ 57 (215)
+|+|.|++||||||+++.|+..+ +..+++.|+++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 58999999999999999999987 367788877653
No 136
>PLN02348 phosphoribulokinase
Probab=99.34 E-value=8.4e-12 Score=97.98 Aligned_cols=133 Identities=15% Similarity=0.234 Sum_probs=73.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC--------------------eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY--------------------THLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~--------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (215)
.++.+|.|.|++||||||+++.|++.++. .+++.||++..........+. .. .+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~---t~-ldP~ 122 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGV---TA-LDPR 122 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCC---cc-CCcc
Confidence 46889999999999999999999999962 478888875321110000000 00 0000
Q ss_pred CCCHHHHHHHHHHHHH---------------------ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028025 79 IVPSEVTIKLLQKAME---------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (215)
Q Consensus 79 ~~~~~~~~~~~~~~~~---------------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~ 137 (215)
....+.+.+.+..... ..+...+|+||...-... . ....+|+.|||+++.++.
T Consensus 123 a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e-----~-lr~l~D~~IyVd~~~dvr 196 (395)
T PLN02348 123 ANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDE-----R-VRDLLDFSIYLDISDDVK 196 (395)
T ss_pred cccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCc-----c-ccccCcEEEEEECCHHHH
Confidence 0011111111111110 112678899984211110 1 233578999999999998
Q ss_pred HHHHhhccCCCCCCcHHHHHHHHH
Q 028025 138 ERRILNRNQGREDDNVETIRKRFK 161 (215)
Q Consensus 138 ~~R~~~r~~~~~~~~~~~~~~~~~ 161 (215)
..|..+|...+.+...+++.+++.
T Consensus 197 l~RRI~RD~~eRG~S~EeV~~~i~ 220 (395)
T PLN02348 197 FAWKIQRDMAERGHSLESIKASIE 220 (395)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHH
Confidence 877777711112234566666654
No 137
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.3e-10 Score=84.93 Aligned_cols=178 Identities=19% Similarity=0.247 Sum_probs=98.8
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCC------cHHHHHHHHH----cCCCCC----H
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSE------NGTMIQNMIK----EGKIVP----S 82 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~----~ 82 (215)
.+..|.+|+|.|+||+||||+|..+|.++|...+-..|.+|+.+..-.. .....-.+++ .....| .
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF 164 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGF 164 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhH
Confidence 3456999999999999999999999999998777766888888766211 1111111111 111110 0
Q ss_pred HH----H----HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe-cCHHHHHHHHhhc--cC--CCC
Q 028025 83 EV----T----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNR--NQ--GRE 149 (215)
Q Consensus 83 ~~----~----~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~-~~~e~~~~R~~~r--~~--~~~ 149 (215)
.. + ...+++++.+ |..+|++|.-........ .. .... .+.++|. .+++....|+.+| .+ .++
T Consensus 165 ~dqa~~V~~GI~~VI~RAi~e--G~~lIIEGvHlVPg~i~~-~~-~~~n-~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp 239 (299)
T COG2074 165 EDQASAVMVGIEAVIERAIEE--GEDLIIEGVHLVPGLIKE-EA-LGNN-VFMFMLYIADEELHRERFYDRIRYTHASRP 239 (299)
T ss_pred HHHhHHHHHHHHHHHHHHHhc--CcceEEEeeeeccccccH-hh-hccc-eEEEEEEeCCHHHHHHHHHHHHHHHhccCc
Confidence 11 1 2334455543 899999983211111111 00 1112 2344444 4677788999988 22 222
Q ss_pred CCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (215)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~ 204 (215)
.....+.+..++....-+.+..++. ++=++++. +.++.++.+.+.+.+..
T Consensus 240 ---~~Ryl~yf~EiR~I~Dyl~~~Are~-gVPvI~n~-di~etv~~il~~i~~~~ 289 (299)
T COG2074 240 ---GGRYLEYFKEIRTIHDYLVERAREH-GVPVIEND-DIDETVDRILEDIRKRT 289 (299)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHhc-CCCeeccc-cHHHHHHHHHHHHHHHH
Confidence 2344444444444433333433333 35566654 77888888777765443
No 138
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=99.33 E-value=3.1e-10 Score=85.34 Aligned_cols=149 Identities=18% Similarity=0.240 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---cCC
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE---SGN 98 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 98 (215)
.+|+|+|.+||||||..+.| |.+||..+ .++|..++.++++..... ...
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cv---------------------------DNlP~~Ll~~l~~~~~~~~~~~~~ 53 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLGYYCV---------------------------DNLPPSLLPQLIELLAQSNSKIEK 53 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcCeeEE---------------------------cCCcHHHHHHHHHHHHhcCCCCce
Confidence 47999999999999999999 88999877 344444444444433311 125
Q ss_pred CeEEEeCCCCC--HHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025 99 DKFLIDGFPRN--EENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (215)
Q Consensus 99 ~~~iidg~~~~--~~~~~~~~~~-~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (215)
-.+++|-.... ......+.++ .....-.++||+|+.+++.+|.....+..+-.....+.+.++..++. +....
T Consensus 54 ~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~----L~~lr 129 (284)
T PF03668_consen 54 VAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKEREL----LEPLR 129 (284)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHH----HHHHH
Confidence 56788852211 1111122221 22223349999999999999998641121111111122334444443 33345
Q ss_pred hcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 176 AKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 176 ~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
....+++..++.++.++.+.|...+..
T Consensus 130 ~~Ad~vIDTs~l~~~~Lr~~i~~~~~~ 156 (284)
T PF03668_consen 130 ERADLVIDTSNLSVHQLRERIRERFGG 156 (284)
T ss_pred HhCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 555555555588999999999998864
No 139
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.32 E-value=1.2e-12 Score=95.18 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=60.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCC---------eEeeHHHHHHHHHHc-----C-CCcHHHHHHHHHcCCCCCHHHHHH
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGY---------THLSAGDLLRAEIKS-----G-SENGTMIQNMIKEGKIVPSEVTIK 87 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~---------~~i~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (215)
+|.|+|++||||||+|+.|++.++. ..++.++.+...... . .... .........+.+.+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~------~~~p~a~d~~~l~~ 74 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYN------FDHPDAFDFDLLKE 74 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSS------TTSGGGBSHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccC------CCCccccCHHHHHH
Confidence 6899999999999999999999972 344555443322100 0 0000 00001112222333
Q ss_pred HHHHHHH----------------------ccCCCeEEEeCCCCC-HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 88 LLQKAME----------------------ESGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 88 ~~~~~~~----------------------~~~~~~~iidg~~~~-~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
.+..... ..+..++|+||.... .+. +. ...|+.|||+++.+++..|...|
T Consensus 75 ~l~~L~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~---l~----~l~D~~ifld~~~~~~l~Rri~R 147 (194)
T PF00485_consen 75 DLKALKNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE---LR----DLFDLKIFLDADEDLRLERRIQR 147 (194)
T ss_dssp HHHHHHTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC---HG----GG-SEEEEEEE-HHHHHHHHHHH
T ss_pred HHHHHhCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee---ec----ccceeEEEecccHHHHHHHHhhh
Confidence 3322111 012578899995422 222 22 24678999999999988888777
No 140
>COG0645 Predicted kinase [General function prediction only]
Probab=99.32 E-value=2.5e-10 Score=78.95 Aligned_cols=117 Identities=25% Similarity=0.281 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-cC
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP---SEVTIKLLQKAMEE-SG 97 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~ 97 (215)
+++++.|.|||||||+|+.|++.++..++..|++ +..+...+...+ - ..+-..+ ......++...... ..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~i-rk~L~g~p~~~r-~----~~g~ys~~~~~~vy~~l~~~A~l~l~~ 75 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVI-RKRLFGVPEETR-G----PAGLYSPAATAAVYDELLGRAELLLSS 75 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHH-HHHhcCCccccc-C----CCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999665 444344111000 0 0001111 01112222222111 12
Q ss_pred CCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
|..||+|+......++..+..+ ...-+...|.+.++.+++..|+..|
T Consensus 76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR 124 (170)
T COG0645 76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAAR 124 (170)
T ss_pred CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHh
Confidence 9999999976666555555543 2333456799999999999999999
No 141
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.31 E-value=7e-12 Score=89.90 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=32.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHH
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRA 58 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~ 58 (215)
+|+|.|+|||||||+|+.|++.+ +..+++.|+++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 58999999999999999999999 6889999888764
No 142
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.28 E-value=1.1e-10 Score=99.25 Aligned_cols=162 Identities=19% Similarity=0.197 Sum_probs=91.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHH--HHH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL--LQK 91 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 91 (215)
.++.+|+++|.|||||||+|+.|+++++ +.+++.|+ ++..+..+......-. ......+ +..
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~~~~~~~~r----------~~~~~~l~~~a~ 526 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRDLGFSDADR----------VENIRRVAEVAR 526 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCCCCCCHHHH----------HHHHHHHHHHHH
Confidence 4689999999999999999999999973 46677755 5544332211111100 0011111 112
Q ss_pred HHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHH
Q 028025 92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV 171 (215)
Q Consensus 92 ~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (215)
.+. ..+..+++|........+..+..+....+..++||+++.+.+.+|. .| +..... -...+..+.....
T Consensus 527 ~~~-~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~-~r--~L~~~~---~~~~l~~l~~~r~--- 596 (632)
T PRK05506 527 LMA-DAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD-PK--GLYAKA---RAGEIKNFTGIDS--- 596 (632)
T ss_pred HHH-hCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC-Cc--chhhhc---ccccccccccccc---
Confidence 222 2278899997544455555555421112447999999999999994 23 111000 0011111111111
Q ss_pred HHHHh-cCcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025 172 QYYEA-KGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 172 ~~~~~-~~~~~~id~-~~~~~e~~~~i~~~l~~ 202 (215)
.|.. ....+++|+ +.++++++++|...+..
T Consensus 597 -~y~~P~~a~~~Id~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 597 -PYEAPENPELRLDTTGRSPEELAEQVLELLRR 628 (632)
T ss_pred -CCCCCCCCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence 1332 223466766 77999999999988854
No 143
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.28 E-value=2.3e-10 Score=79.60 Aligned_cols=109 Identities=20% Similarity=0.216 Sum_probs=65.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh---CC--eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHH--HHHHHHc
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL--LQKAMEE 95 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~---~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 95 (215)
+|+|+|.|||||||+|+.|++.+ +. .+++. |.++..+.....+... . ..+....+ +...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~~--------~--~~~~~~~~~~~a~~l~~ 69 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSRE--------D--REENIRRIAEVAKLLAD 69 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCcc--------h--HHHHHHHHHHHHHHHHh
Confidence 47899999999999999999998 53 44544 4455443322111100 0 00111111 1122222
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhh
Q 028025 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (215)
Q Consensus 96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~ 143 (215)
.+..+|+|........+..+..+....+..++|+++|.+++.+|..+
T Consensus 70 -~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 70 -AGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred -CCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 37889999765555555555553223455689999999999999654
No 144
>PLN02772 guanylate kinase
Probab=99.28 E-value=1.6e-10 Score=90.79 Aligned_cols=169 Identities=20% Similarity=0.296 Sum_probs=99.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHc---C----CCcHHHHHHHHHcCCCCCHHH-------
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---G----SENGTMIQNMIKEGKIVPSEV------- 84 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~------- 84 (215)
+.+.|+|+||+||||+||++.|.+.+.. ..+......|..... + ....+.+......+.++....
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 5678999999999999999999887631 112222233322111 0 011144555555555543221
Q ss_pred -HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028025 85 -TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF 163 (215)
Q Consensus 85 -~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 163 (215)
-.+.++..+.+ ++.+|+| ........+.. ....+-.++++..+.+++.+|+..| +. +..+.+.+|+..+
T Consensus 214 Tsk~~V~~vl~~--Gk~vILd---LD~qGar~Lr~-~~l~~v~IFI~PPSlEeLe~RL~~R--Gt--eseE~I~kRL~~A 283 (398)
T PLN02772 214 TSIEAVEVVTDS--GKRCILD---IDVQGARSVRA-SSLEAIFIFICPPSMEELEKRLRAR--GT--ETEEQIQKRLRNA 283 (398)
T ss_pred ccHHHHHHHHHh--CCcEEEe---CCHHHHHHHHH-hcCCeEEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHHHH
Confidence 14556666554 7888888 44455555555 4444433444455689999999987 43 3567888998876
Q ss_pred hhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025 164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
...... ..+......+++|+ ++++.++++.++|..
T Consensus 284 ~~Ei~~--~~~~~~fD~vIvND--dLe~A~~~L~~iL~~ 318 (398)
T PLN02772 284 EAELEQ--GKSSGIFDHILYND--NLEECYKNLKKLLGL 318 (398)
T ss_pred HHHHhh--ccccCCCCEEEECC--CHHHHHHHHHHHHhh
Confidence 432110 00111223455543 889999999888753
No 145
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.27 E-value=5.2e-10 Score=76.41 Aligned_cols=165 Identities=17% Similarity=0.196 Sum_probs=99.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC----CeEeeHHHHHHHHHHcC----CCcHHHHHHHHHcCCCCCHHHH------
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSG----SENGTMIQNMIKEGKIVPSEVT------ 85 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~----~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~------ 85 (215)
+..+|++.||+|+||-|+.......+. +.++.. -+.|..-..+ .-....+...-..+-+.-....
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrR-vITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Yg 82 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRR-VITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYG 82 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEE-EecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCcccc
Confidence 567899999999999999999988884 222221 1122111110 0111112221111111000000
Q ss_pred -HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHh
Q 028025 86 -IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL 164 (215)
Q Consensus 86 -~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~ 164 (215)
-..+...+.. |..+++.|.-....+ ... .+. --+++.+.++++++.+|+..| || ++.+++..|+..-.
T Consensus 83 ip~eId~wl~~--G~vvl~NgSRa~Lp~---arr-ry~-~Llvv~ita~p~VLaqRL~~R--GR--Es~eeI~aRL~R~a 151 (192)
T COG3709 83 IPAEIDLWLAA--GDVVLVNGSRAVLPQ---ARR-RYP-QLLVVCITASPEVLAQRLAER--GR--ESREEILARLARAA 151 (192)
T ss_pred CchhHHHHHhC--CCEEEEeccHhhhHH---HHH-hhh-cceeEEEecCHHHHHHHHHHh--cc--CCHHHHHHHHHhhc
Confidence 1123333333 889999875332222 222 333 235899999999999999988 65 66888988877643
Q ss_pred hcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025 165 ESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
.. -...+.++.||+++.++..-+.....+...
T Consensus 152 ~~-------~~~~~dv~~idNsG~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 152 RY-------TAGPGDVTTIDNSGELEDAGERLLALLHQD 183 (192)
T ss_pred cc-------ccCCCCeEEEcCCCcHHHHHHHHHHHHHhh
Confidence 32 123567999999999999999988888744
No 146
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.27 E-value=2e-11 Score=89.23 Aligned_cols=118 Identities=21% Similarity=0.338 Sum_probs=64.5
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh---CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCC-------HHHHH
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP-------SEVTI 86 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 86 (215)
+..+|.++++.|+|||||||++..+.+.+ ++.+++.|++ +... +....+... ...... ..+..
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~----p~~~~~~~~--~~~~~~~~~~~~a~~~~~ 83 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFH----PDYDELLKA--DPDEASELTQKEASRLAE 83 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGS----TTHHHHHHH--HCCCTHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhc----cchhhhhhh--hhhhhHHHHHHHHHHHHH
Confidence 44689999999999999999999999987 6888988764 3221 111111111 001110 11223
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCHHHHH-HHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 87 KLLQKAMEESGNDKFLIDGFPRNEENRA-AFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 87 ~~~~~~~~~~~~~~~iidg~~~~~~~~~-~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
.+++..+.. +..+++|+......... .+..+ .+... .++++.++++....|...|
T Consensus 84 ~~~~~a~~~--~~nii~E~tl~~~~~~~~~~~~~k~~GY~v-~l~~v~~~~e~s~~rv~~R 141 (199)
T PF06414_consen 84 KLIEYAIEN--RYNIIFEGTLSNPSKLRKLIREAKAAGYKV-ELYYVAVPPELSIERVRQR 141 (199)
T ss_dssp HHHHHHHHC--T--EEEE--TTSSHHHHHHHHHHHCTT-EE-EEEEE---HHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCEEEecCCCChhHHHHHHHHHHcCCceE-EEEEEECCHHHHHHHHHHH
Confidence 344444443 78999999776555444 22222 34443 4788899999999999999
No 147
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.27 E-value=1.3e-10 Score=83.81 Aligned_cols=164 Identities=20% Similarity=0.333 Sum_probs=95.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHc---CCC----cHHHHHHHHHcCCCCCHH--------
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE-------- 83 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~-------- 83 (215)
++..|+|+||+|||||||++.|.+.++- .........|..... +.. ..+.+......+.++...
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence 3568999999999999999999998752 111111112221110 111 123344444444332211
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecC-HHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028025 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKV 162 (215)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~-~e~~~~R~~~r~~~~~~~~~~~~~~~~~~ 162 (215)
.....+...+.. +..+++|. +...+..+.. ....| ++||+.++ .+.+.+|+..| ..+..+.+..|+..
T Consensus 81 t~~~~i~~~~~~--gk~~il~~---~~~g~~~L~~-~~~~~-~~IfI~~~s~~~l~~~l~~r----~~~~~~~i~~r~~~ 149 (183)
T PF00625_consen 81 TSKSAIDKVLEE--GKHCILDV---DPEGVKQLKK-AGFNP-IVIFIKPPSPEVLKRRLRRR----GDESEEEIEERLER 149 (183)
T ss_dssp EEHHHHHHHHHT--TTEEEEEE---THHHHHHHHH-CTTTE-EEEEEEESSHHHHHHHHHTT----THCHHHHHHHHHHH
T ss_pred hccchhhHhhhc--CCcEEEEc---cHHHHHHHHh-cccCc-eEEEEEccchHHHHHHHhcc----ccccHHHHHHHHHH
Confidence 114555555554 78888883 3566677776 66666 47888765 67788887766 33456677777766
Q ss_pred HhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025 163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
....... +.. -..++. ++ ++++++++|.++|+
T Consensus 150 ~~~~~~~----~~~-fd~vi~-n~-~le~~~~~l~~ii~ 181 (183)
T PF00625_consen 150 AEKEFEH----YNE-FDYVIV-ND-DLEEAVKELKEIIE 181 (183)
T ss_dssp HHHHHGG----GGG-SSEEEE-CS-SHHHHHHHHHHHHH
T ss_pred HHHHHhH----hhc-CCEEEE-Cc-CHHHHHHHHHHHHH
Confidence 5543222 222 234444 33 89999999998874
No 148
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.27 E-value=1.2e-10 Score=82.23 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=96.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHHHHHcCC----CcH-------------HHHHHHHHcCCCC
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGS----ENG-------------TMIQNMIKEGKIV 80 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~~~~~~~----~~~-------------~~~~~~~~~~~~~ 80 (215)
.+..+|.|.|.+.|||||||+.|...| |..+|+.||++...-.-.. ... +.+...+......
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~ 81 (225)
T KOG3308|consen 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNA 81 (225)
T ss_pred ceEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCcccc
Confidence 355789999999999999999999998 5789999998764432211 011 1111222222222
Q ss_pred CHHHHHHHHHH--------H--HHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCC
Q 028025 81 PSEVTIKLLQK--------A--MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED 150 (215)
Q Consensus 81 ~~~~~~~~~~~--------~--~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~ 150 (215)
+. ....++.. + ........+++|||.... ... ....+|..|.+..+-+++.+|...|..-.+.
T Consensus 82 ~~-ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~--y~p----~~~~~d~~im~~~~y~~~krRr~~Rt~y~p~ 154 (225)
T KOG3308|consen 82 PE-AREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYN--YKP----QVDLFDRIIMLTLDYETCKRRREARTYYPPD 154 (225)
T ss_pred ch-HhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEe--cch----hhhhhhhheeeeccHHHHHHhhcccccCCCC
Confidence 21 11111111 1 111226789999976221 111 1123556899999999999999988111111
Q ss_pred Cc---HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025 151 DN---VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK 206 (215)
Q Consensus 151 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~ 206 (215)
+. ...++.++..+... .+ +........+|++.+-+.+-..|...+......
T Consensus 155 ~tgyfd~~~~P~Y~~~~~~----~~-d~~~h~~~flngdvs~e~~~~~v~~~i~~~~~~ 208 (225)
T KOG3308|consen 155 DTGYFDPVVWPHYEKNFEE----AR-DRSRHDSLFLNGDVSEEKLDDKVNESINQRQQI 208 (225)
T ss_pred CCccccCccchHHHHHHHH----HH-hhcccceeeecccchhhhchhhhhhhhcccccc
Confidence 11 11112222222111 00 122224678888888888888887777544433
No 149
>PRK15453 phosphoribulokinase; Provisional
Probab=99.24 E-value=4.8e-11 Score=89.82 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=33.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR 57 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~ 57 (215)
.++++|+|+|.|||||||+++.|++.++ ..+++.|++++
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 5678999999999999999999999884 46677777664
No 150
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.24 E-value=5.1e-11 Score=88.15 Aligned_cols=121 Identities=16% Similarity=0.255 Sum_probs=63.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHHHHHHHH---------cCCCc---HHHHHHHH---HcC-CC
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIK---------SGSEN---GTMIQNMI---KEG-KI 79 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~~~~~~~---------~~~~~---~~~~~~~~---~~~-~~ 79 (215)
+|.|.|++||||||+|+.|+..+. ..+++.|+++..... .+.+. .+.+.+.+ ..+ ..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 588999999999999999999883 356777776532210 01100 01111111 111 11
Q ss_pred CCHHHH----HHHHHHHHH-ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 80 VPSEVT----IKLLQKAME-ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 80 ~~~~~~----~~~~~~~~~-~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
+..... ......... ..+..++|+||..........|.. .....|+.|||++|.+++.+|+.+|
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~-l~~~~D~~ifvd~~~~~~~~rl~~R 149 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLF-VSDFFDFSIYVDADEDDIEKWYIKR 149 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhh-HHHhCCeEEEEECCHHHHHHHHHHH
Confidence 100000 000000010 112568999995322221111222 2234678999999999987777766
No 151
>PHA03132 thymidine kinase; Provisional
Probab=99.24 E-value=3e-10 Score=93.55 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
.++|+|+|+.||||||+++.|++.++.
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg~ 283 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILGD 283 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 688999999999999999999999843
No 152
>PRK07429 phosphoribulokinase; Provisional
Probab=99.23 E-value=2e-10 Score=89.45 Aligned_cols=139 Identities=16% Similarity=0.227 Sum_probs=74.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHH---HHH-cCC-Cc------HHHHH---HHHHcCCCC
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRA---EIK-SGS-EN------GTMIQ---NMIKEGKIV 80 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~---~~~-~~~-~~------~~~~~---~~~~~~~~~ 80 (215)
+.++.+|.|+|++||||||+++.|++.++ ..+++.|+++.. ... .+. .. .+.+. ..+..++.+
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I 84 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI 84 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence 45789999999999999999999999987 567788776421 000 000 00 00000 111122111
Q ss_pred CHHHHHH---HHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHH
Q 028025 81 PSEVTIK---LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR 157 (215)
Q Consensus 81 ~~~~~~~---~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~ 157 (215)
....... .........+...+|+||.....+. .+ ...+|+.|||+++.++...|..+|...+.+...+.+.
T Consensus 85 ~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~~--~l----r~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~ 158 (327)
T PRK07429 85 LKPIYNHETGTFDPPEYIEPNKIVVVEGLHPLYDE--RV----RELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVL 158 (327)
T ss_pred ecceeecCCCCcCCcEecCCCcEEEEechhhcCcH--hH----HhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 1000000 0000000112568899995311111 11 1246889999999999988877762122233456666
Q ss_pred HHHHH
Q 028025 158 KRFKV 162 (215)
Q Consensus 158 ~~~~~ 162 (215)
+++..
T Consensus 159 ~~i~~ 163 (327)
T PRK07429 159 AEIEA 163 (327)
T ss_pred HHHHH
Confidence 66544
No 153
>COG4639 Predicted kinase [General function prediction only]
Probab=99.23 E-value=5.3e-10 Score=75.97 Aligned_cols=114 Identities=19% Similarity=0.154 Sum_probs=72.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCe
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (215)
+.++++.|+|||||||+|+.. .....+++.+++-+.. .. ..+.... .......-+.....++..+.+ |..
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~l-g~--~~~~e~s---qk~~~~~~~~l~~~l~qrl~~--Gk~ 71 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLL-GV--SASKENS---QKNDELVWDILYKQLEQRLRR--GKF 71 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHh-hh--chhhhhc---cccHHHHHHHHHHHHHHHHHc--CCe
Confidence 468999999999999999953 2357788887754432 10 0000000 000000112224445555554 899
Q ss_pred EEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 101 FLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
.|+|++....+.+..+..+ .+......|+++.|.+.|.+|.+.|
T Consensus 72 tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 72 TIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred EEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 9999988766666665554 4555556899999999999998755
No 154
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.23 E-value=1.1e-10 Score=87.08 Aligned_cols=133 Identities=15% Similarity=0.179 Sum_probs=73.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCC-----eE-eeHHHHHHHHH--Hc-CCCcHHHHHHHHHcCCCCCHHHHHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-----TH-LSAGDLLRAEI--KS-GSENGTMIQNMIKEGKIVPSEVTIKL 88 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~-----~~-i~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (215)
..++.+|+|.|++||||||+++.|+..+.. .+ ++.|+++.... .. +... ................
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~------~~~~~~~~d~~~~~~~ 103 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRP------RKGAPETFDVAGLAAL 103 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhccccc------ccCCCCCCCHHHHHHH
Confidence 357899999999999999999999998852 23 55555432210 00 0000 0000000111111111
Q ss_pred HHHHH-------------------H----c-cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 89 LQKAM-------------------E----E-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 89 ~~~~~-------------------~----~-~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
+.... . . .....+|+||....... ..|.. ....+|.+|||++|.+++.+|+..|
T Consensus 104 l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~-~~~~~-l~~~~D~vi~v~~~~~~~~~R~~~R 181 (229)
T PRK09270 104 LRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDE-EPWRR-LAGLFDFTIFLDAPAEVLRERLVAR 181 (229)
T ss_pred HHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeecc-ccHHH-HHhhCCEEEEEECCHHHHHHHHHHH
Confidence 11110 0 0 02457888986543221 12222 2335789999999999999999988
Q ss_pred --cCCCCCCcHHHHHHHHH
Q 028025 145 --NQGREDDNVETIRKRFK 161 (215)
Q Consensus 145 --~~~~~~~~~~~~~~~~~ 161 (215)
..+. ..+++.+++.
T Consensus 182 ~~~~g~---s~~~~~~~~~ 197 (229)
T PRK09270 182 KLAGGL---SPEAAEAFVL 197 (229)
T ss_pred HHhcCC---CHHHHHHHHH
Confidence 2333 3456666654
No 155
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=99.23 E-value=1e-09 Score=77.19 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=40.7
Q ss_pred CCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH--hcCcEEEEcCCCCHH
Q 028025 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE--AKGKVRKIDAAKPVA 190 (215)
Q Consensus 121 ~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~id~~~~~~ 190 (215)
...+|.+|||.++|++|.+|+..|.+......+....+.++..++.|-- ...+. ..-+++++|++...|
T Consensus 151 ~v~~dgiIYLrasPetc~~Ri~~R~R~EE~gipL~YLe~LH~~HE~WLi-~~~f~~lq~vpvLVLDad~n~d 221 (244)
T KOG4235|consen 151 DVSLDGIIYLRASPETCYKRIYLRAREEEKGIPLKYLEALHELHESWLI-KLHFPNLQAVPVLVLDADHNMD 221 (244)
T ss_pred ccccceEEEeecChHHHHHHHHHHhhhhhcCCcHHHHHHHHHHHHHHHH-HHhhhHhhcCCeEEEecccchh
Confidence 3678999999999999999999982111111222223333333333221 22233 345789999866544
No 156
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.22 E-value=2.7e-11 Score=86.84 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=32.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHHHHHHHH
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAE 59 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~~~~~~~ 59 (215)
+|+|.|+|||||||+|+.|++.+ +..+++.|++++..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~ 42 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR 42 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence 58999999999999999999997 46789999988743
No 157
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.22 E-value=2.3e-10 Score=89.11 Aligned_cols=120 Identities=16% Similarity=0.153 Sum_probs=70.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC------CeEeeHHHHHHHHHHc---CCCcH-------HHHHH-------HHHcCCC
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKS---GSENG-------TMIQN-------MIKEGKI 79 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~------~~~i~~~~~~~~~~~~---~~~~~-------~~~~~-------~~~~~~~ 79 (215)
+.+++|+|||||||+++.|++.+. ..+++.||++.+.... +.... ..+.. .+..|..
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~ 80 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE 80 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 368999999999999999998875 3588999988422211 11111 11111 1111211
Q ss_pred CCH------HHH------------------------HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEE
Q 028025 80 VPS------EVT------------------------IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFV 127 (215)
Q Consensus 80 ~~~------~~~------------------------~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~ 127 (215)
... ... ..+....+. ....+|+|+.......+..+..+ ....+...
T Consensus 81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~Ls--rpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~ 158 (340)
T TIGR03575 81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVS--RPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQ 158 (340)
T ss_pred ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHh--CCCCceecCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 111 111 111111111 14568999866665555555544 33445579
Q ss_pred EEEecCHHHHHHHHhhc
Q 028025 128 LFFDCSEEEMERRILNR 144 (215)
Q Consensus 128 i~L~~~~e~~~~R~~~r 144 (215)
||+++|.+++.+|+.+|
T Consensus 159 V~ld~ple~~l~RN~~R 175 (340)
T TIGR03575 159 LFLDCPVESCLLRNKQR 175 (340)
T ss_pred EEEeCCHHHHHHHHhcC
Confidence 99999999999999988
No 158
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=99.20 E-value=2.2e-09 Score=78.97 Aligned_cols=149 Identities=21% Similarity=0.292 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH-c--cCC
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-E--SGN 98 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~ 98 (215)
.+|+|+|.+|||||+-++.| +.+||..+ .++|..+.-.+++-... + ...
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycv---------------------------DNLPp~Llp~~~~~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLGYYCV---------------------------DNLPPQLLPKLADLMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcCeeee---------------------------cCCCHHHHHHHHHHHhhcccCCce
Confidence 47999999999999999999 87898766 33444444444431111 1 124
Q ss_pred CeEEEeCCCC----C-HHHHHHHHHhcC-CCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHH
Q 028025 99 DKFLIDGFPR----N-EENRAAFEAVTK-IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ 172 (215)
Q Consensus 99 ~~~iidg~~~----~-~~~~~~~~~~~~-~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (215)
-.+++|-... . .+....+.. .. ..+ .++||+++.+++.+|...-.+..+-.....+...+...++...|+
T Consensus 54 vAv~iDiRs~~~~~~l~~~l~~l~~-~~~~~~-~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pL-- 129 (286)
T COG1660 54 VAVVIDVRSREFFGDLEEVLDELKD-NGDIDP-RVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPL-- 129 (286)
T ss_pred EEEEEecccchhHHHHHHHHHHHHh-cCCCCc-eEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHH--
Confidence 5677884211 1 122233332 32 223 399999999999999985411111111112455555555544444
Q ss_pred HHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025 173 YYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (215)
Q Consensus 173 ~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~ 204 (215)
.+...+++..++.++.++.+.|...+....
T Consensus 130 --k~~A~~vIDTs~ls~~~Lr~~i~~~f~~~~ 159 (286)
T COG1660 130 --REIADLVIDTSELSVHELRERIRTRFLGKE 159 (286)
T ss_pred --HHHhhhEeecccCCHHHHHHHHHHHHccCC
Confidence 444445555568899999999999998643
No 159
>PRK05439 pantothenate kinase; Provisional
Probab=99.19 E-value=9.3e-11 Score=90.23 Aligned_cols=127 Identities=15% Similarity=0.221 Sum_probs=69.3
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHHHHHHHH---------cCCCcH---HHHHH---HH
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIK---------SGSENG---TMIQN---MI 74 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~~~~~~~---------~~~~~~---~~~~~---~~ 74 (215)
..++|.+|+|+|+|||||||+|+.|++.++ ..+++.|+++..... .+.+.. +.+.+ .+
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHH
Confidence 456789999999999999999999998664 457788887643211 011100 11111 11
Q ss_pred HcCCC-CCH----HHHHHHHHHH-HHccCCCeEEEeCCCCC-HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 75 KEGKI-VPS----EVTIKLLQKA-MEESGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 75 ~~~~~-~~~----~~~~~~~~~~-~~~~~~~~~iidg~~~~-~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
..|.. +.. ......+... ....+..++|+||.... ......+.. .....|+.|||+++.+++.+|+.+|
T Consensus 162 k~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~-l~d~~D~~IfVda~~~~~~~w~i~R 237 (311)
T PRK05439 162 KSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLF-VSDFFDFSIYVDADEDLIEKWYIER 237 (311)
T ss_pred HcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchh-hHHhCCEEEEEECCHHHHHHHHHHH
Confidence 22211 100 0000001000 00112578899994422 111101111 2234688999999999999888777
No 160
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=99.18 E-value=2.2e-10 Score=84.11 Aligned_cols=153 Identities=18% Similarity=0.257 Sum_probs=78.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH---HHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLL 89 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 89 (215)
...+.+|++.|.||.|||++|++|+..|+ ..+++.|+.-|........ ...+.....++.....+.. .+-+
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~-~~ff~p~n~~~~~~R~~~a~~~l~dl 87 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQD-AEFFDPDNEEAKKLREQIAKEALEDL 87 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S--GGGGSTT-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccc-cccCCCCChHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999995 4788899876665433111 1000000000000001111 1222
Q ss_pred HHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec--CHHHHHHHHhhc-cC-------CCCCCcHHHHHHH
Q 028025 90 QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC--SEEEMERRILNR-NQ-------GREDDNVETIRKR 159 (215)
Q Consensus 90 ~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~--~~e~~~~R~~~r-~~-------~~~~~~~~~~~~~ 159 (215)
..-+...+|++.|+|+...+.+.+..+.+........++|+++ +.+.+.++.... .. ..++...+++.+|
T Consensus 88 ~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~R 167 (222)
T PF01591_consen 88 IEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKR 167 (222)
T ss_dssp HHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHH
Confidence 2333434599999999988888777666641111134666666 555544444433 11 1223346788889
Q ss_pred HHHHhhcchhHH
Q 028025 160 FKVFLESSLPVV 171 (215)
Q Consensus 160 ~~~~~~~~~~~~ 171 (215)
++.|.....++.
T Consensus 168 I~~Ye~~YEpl~ 179 (222)
T PF01591_consen 168 IEHYEKVYEPLD 179 (222)
T ss_dssp HHHHHTT-----
T ss_pred HHhhcccccccc
Confidence 999988877774
No 161
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.11 E-value=1.1e-09 Score=83.82 Aligned_cols=126 Identities=18% Similarity=0.308 Sum_probs=68.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHHHHHHH--Hc-------CCCcH---HHHHH---HHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEI--KS-------GSENG---TMIQN---MIK 75 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~~~~~~--~~-------~~~~~---~~~~~---~~~ 75 (215)
+.+|.+|+|.|++||||||+++.|+..+. ..+++.|+++.... .. +.+.. ..+.. .+.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 46789999999999999999998877663 45567766553221 10 11100 11111 112
Q ss_pred cCCC-C--C--HHHHHHHHHHHHH-ccCCCeEEEeCCCCCHH-H----HHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 76 EGKI-V--P--SEVTIKLLQKAME-ESGNDKFLIDGFPRNEE-N----RAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 76 ~~~~-~--~--~~~~~~~~~~~~~-~~~~~~~iidg~~~~~~-~----~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
.|.. + | +............ ..+..++|+||...-.. . -..|.. ....+|+.|||++|.+++.+|+.+|
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~-~~d~~D~~IyvDa~~d~~~~w~i~R 217 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVF-VSDFVDFSIYVDAEEDLLQTWYINR 217 (290)
T ss_pred CCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHH-HHHhCCEEEEEECCHHHHHHHHHHH
Confidence 2221 1 0 0000111111100 12367889999532211 0 011222 2245789999999999999888777
No 162
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.07 E-value=1.5e-09 Score=82.85 Aligned_cols=133 Identities=17% Similarity=0.276 Sum_probs=67.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHH----cC-CCc------HHHH---HHHHHcCCCCCHHHH
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIK----SG-SEN------GTMI---QNMIKEGKIVPSEVT 85 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~----~~-~~~------~~~~---~~~~~~~~~~~~~~~ 85 (215)
+|.|+|++||||||+++.|+..++ ..+++.|++...... .+ ... ...+ ...+..++.+.....
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 488999999999999999998874 557777766431000 00 000 0000 011122211111000
Q ss_pred HHH---HHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028025 86 IKL---LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK 161 (215)
Q Consensus 86 ~~~---~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~ 161 (215)
... +.......+...+|+||...-.+ ..+ ...+|+.|||+++.++..+|..+|...+.+...+.+.+++.
T Consensus 81 ~~~~~~~~~~~~i~~~~ivIvEG~~~l~~--~~l----~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~ 153 (273)
T cd02026 81 NHVTGLIDPPELIKPTKIVVIEGLHPLYD--ERV----RELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIE 153 (273)
T ss_pred cccCCCcCCcEEcCCCCEEEEeeehhhCc--hhh----hhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 000 00000001246889998531111 122 22467899999999999777666611112234556666654
No 163
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=99.07 E-value=6.8e-10 Score=66.74 Aligned_cols=60 Identities=20% Similarity=0.450 Sum_probs=43.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh---CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (215)
+|+|+|+|||||||+++.|++.+ +..+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~----------------------------------------------- 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE----------------------------------------------- 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence 47899999999999999999985 3333321
Q ss_pred eEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec
Q 028025 100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC 132 (215)
Q Consensus 100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~ 132 (215)
.+|+||+......+. .. ....+|..|||++
T Consensus 34 ~~I~eg~~~~~~~~~--~~-~~~~~d~~Iyld~ 63 (69)
T cd02019 34 IVILEGLYASYKSRD--AR-IRDLADLKIYLDA 63 (69)
T ss_pred EEEecchhhhhhhHH--hh-ccccccEEEEEEe
Confidence 799999764433322 22 5667889999986
No 164
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.05 E-value=1.5e-09 Score=89.22 Aligned_cols=146 Identities=14% Similarity=0.189 Sum_probs=75.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-CeEeeHHHHHHHHH--HcCCCcH-----HHH---HHHHHcCCCCCHHHH--
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEI--KSGSENG-----TMI---QNMIKEGKIVPSEVT-- 85 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~-~~~i~~~~~~~~~~--~~~~~~~-----~~~---~~~~~~~~~~~~~~~-- 85 (215)
..+.+|.|.|++||||||+++.|+..++ ..+++.|++..... ....... ..+ ...+..+..+.....
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf 142 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDF 142 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCcccc
Confidence 3578999999999999999999999884 45677766532110 0000000 001 111222222111100
Q ss_pred --HHHHHH-HHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHH-HHHHHhhc--cCCCCCCcHHHHHHH
Q 028025 86 --IKLLQK-AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE-MERRILNR--NQGREDDNVETIRKR 159 (215)
Q Consensus 86 --~~~~~~-~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~-~~~R~~~r--~~~~~~~~~~~~~~~ 159 (215)
...... .....+..++|+||..... ..+. ...|+.||++++.+. +.+|+..+ .+|+ ..+.+.++
T Consensus 143 ~t~~r~~~~~i~v~p~~VVIVEGIyaL~---~~Lr----~LlDlkIFVDtdvDirL~RRI~RD~~eRGr---s~EsVi~q 212 (656)
T PLN02318 143 KSSSRVGYRTLEVPSSRIVIIEGIYALS---EKLR----PLLDLRVSVTGGVHFDLVKRVLRDIQRAGQ---EPEEIIHQ 212 (656)
T ss_pred ccCcccCCceeecCCCcEEEEechhhcc---HhHH----hhCCEEEEEcCCccHHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 000000 0111236789999965432 2222 345789999987666 44555544 3344 33444443
Q ss_pred HHHHhhcchhHHHHHHhc
Q 028025 160 FKVFLESSLPVVQYYEAK 177 (215)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~ 177 (215)
|.....|....|.++
T Consensus 213 ---~~~~VkP~y~~FIeP 227 (656)
T PLN02318 213 ---ISETVYPMYKAFIEP 227 (656)
T ss_pred ---HHHhhcchHHHHhCc
Confidence 445555555555443
No 165
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.05 E-value=3.3e-09 Score=72.40 Aligned_cols=150 Identities=19% Similarity=0.209 Sum_probs=87.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh--CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (215)
+.+-++.|+.||||||+-...--.+ ++.+++.|.+.... ....+....+ +. .......+...+.. +
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i-~p~~p~~~~i----~A-----~r~ai~~i~~~I~~--~ 69 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI-SPDNPTSAAI----QA-----ARVAIDRIARLIDL--G 69 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc-CCCCchHHHH----HH-----HHHHHHHHHHHHHc--C
Confidence 5677889999999999987644444 46788887765443 2222221111 11 11123334444433 7
Q ss_pred CeEEEeCCCCCH---HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHhhcchhHHHHH
Q 028025 99 DKFLIDGFPRNE---ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSLPVVQYY 174 (215)
Q Consensus 99 ~~~iidg~~~~~---~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (215)
..+.++...... +..+.... .+....+.++.--+.|...+|++.| ..|.+....+.+..|+.. ....+...+
T Consensus 70 ~~F~~ETtLS~~s~~~~ik~Ak~-~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~r---sle~l~~~l 145 (187)
T COG4185 70 RPFIAETTLSGPSILELIKTAKA-AGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRR---SLELLAQAL 145 (187)
T ss_pred CCcceEEeeccchHHHHHHHHHh-CCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH---HHHHHHHHH
Confidence 778777644333 33333333 4444444444445778899999999 777787878888887544 333333334
Q ss_pred HhcCcEEEEcCC
Q 028025 175 EAKGKVRKIDAA 186 (215)
Q Consensus 175 ~~~~~~~~id~~ 186 (215)
.-.+..++.|++
T Consensus 146 ~l~dr~~IydNS 157 (187)
T COG4185 146 TLADRATIYDNS 157 (187)
T ss_pred hhcceeEEecCC
Confidence 444556777774
No 166
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.03 E-value=2.6e-09 Score=79.91 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=30.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHH
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR 57 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~ 57 (215)
+|+|+|.+||||||+++.|++.++ ..+++.|++++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 589999999999999999998874 46788877766
No 167
>PHA00729 NTP-binding motif containing protein
Probab=98.96 E-value=1.2e-08 Score=74.95 Aligned_cols=113 Identities=15% Similarity=0.119 Sum_probs=63.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCe--EeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (215)
......|+|+|+||+||||+|..|++.++.. .+..++.... ... ...++..+.....+......
T Consensus 14 ~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d--~~~------------~~~fid~~~Ll~~L~~a~~~ 79 (226)
T PHA00729 14 NNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQ--YVQ------------NSYFFELPDALEKIQDAIDN 79 (226)
T ss_pred cCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHh--cCC------------cEEEEEHHHHHHHHHHHHhc
Confidence 3445679999999999999999999987521 1212111000 000 01122223333444433322
Q ss_pred cC-CCeEEEeCCC---CCHHHH-------HHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 96 SG-NDKFLIDGFP---RNEENR-------AAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 96 ~~-~~~~iidg~~---~~~~~~-------~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
.. ...+|+|++. ....+. ..+..+....+++++++.++++.+..++.+|
T Consensus 80 ~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 80 DYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred CCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 11 2467999722 111111 1122212235788999999999999999998
No 168
>PHA03136 thymidine kinase; Provisional
Probab=98.95 E-value=7.3e-08 Score=75.41 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=24.5
Q ss_pred cCCCCcEEEEEecCHHHHHHHHhhccCCCCC
Q 028025 120 TKIEPEFVLFFDCSEEEMERRILNRNQGRED 150 (215)
Q Consensus 120 ~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~ 150 (215)
..+.||.+|||+++++++.+|+.+| +|+.
T Consensus 188 ~~p~pD~IIyL~l~~e~~~~RI~kR--gR~~ 216 (378)
T PHA03136 188 DEPHGGNIVIMDLDECEHAERIIAR--GRPG 216 (378)
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHc--CCCc
Confidence 3457899999999999999999999 4444
No 169
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.86 E-value=5.4e-09 Score=75.30 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (215)
++|+|+|.|+|||||.|..|.+.+. ..+.-.+|-- .-+..+...++.-.+..- .....+.+++.+..
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des-lg~~~ns~y~~s~~EK~l------Rg~L~S~v~R~Lsk- 73 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES-LGIEKNSNYGDSQAEKAL------RGKLRSAVDRSLSK- 73 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh-cCCCCcccccccHHHHHH------HHHHHHHHHhhccc-
Confidence 4799999999999999999999883 1222222211 000111111110000000 00113333333332
Q ss_pred CCCeEEEeCCCCCH---HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCC---CCCCcHHHHHHHHHHHhhcchh
Q 028025 97 GNDKFLIDGFPRNE---ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQG---REDDNVETIRKRFKVFLESSLP 169 (215)
Q Consensus 97 ~~~~~iidg~~~~~---~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~---~~~~~~~~~~~~~~~~~~~~~~ 169 (215)
+..||+|.-.... .+.....+ .......+|+..+|.|.+.+....| ..+ -..+..+.+..|++.-....+
T Consensus 74 -~~iVI~DslNyIKGfRYeLyC~ak-~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~e~le~L~~RyEeP~s~NR- 150 (281)
T KOG3062|consen 74 -GDIVIVDSLNYIKGFRYELYCEAK-AARTTYCVVHTAVPQELCREWNSEREDPGEDGYDDELLEALVQRYEEPNSRNR- 150 (281)
T ss_pred -CcEEEEecccccccceeeeeeehh-ccceeEEEEEecCCHHHHHHhcccCCCCCCCCCCHHHHHHHHHHhhCCCcccc-
Confidence 8899999632211 11122222 2223445899999999999999888 222 222333444444443322222
Q ss_pred HHHHHHhcC-cEEEEcCCCCHHHHHHHHH
Q 028025 170 VVQYYEAKG-KVRKIDAAKPVAEVFDAVK 197 (215)
Q Consensus 170 ~~~~~~~~~-~~~~id~~~~~~e~~~~i~ 197 (215)
|+.+= -++-.+.+.+.+.+++.+.
T Consensus 151 ----WDsPLf~ll~~~~~~~~~~I~~al~ 175 (281)
T KOG3062|consen 151 ----WDSPLFTLLPDVITLPIDDILKALF 175 (281)
T ss_pred ----ccCcceEEecccCCCcHHHHHHHHh
Confidence 22221 1112233667777766654
No 170
>PLN02165 adenylate isopentenyltransferase
Probab=98.85 E-value=1.9e-08 Score=77.87 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=33.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~ 55 (215)
.++.+|+|.||+||||||++..|++.++..+++.|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 3567999999999999999999999999999998776
No 171
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.9e-08 Score=68.12 Aligned_cols=171 Identities=17% Similarity=0.133 Sum_probs=88.8
Q ss_pred ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHH
Q 028025 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL 88 (215)
Q Consensus 13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (215)
.+.+...+..+|+|+|.+||||||+|=+|.+.+. ..++--+|-+|.-+...-.+.+.- ...+-....-
T Consensus 23 Rq~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~d--------R~ENIRRige 94 (207)
T KOG0635|consen 23 RQKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAED--------RNENIRRIGE 94 (207)
T ss_pred HHHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhh--------hhhhHHHHHH
Confidence 4566677899999999999999999999988882 455545565665443322221100 0000011222
Q ss_pred HHHHHHccCCCeEEEeCCCCC-HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcc
Q 028025 89 LQKAMEESGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESS 167 (215)
Q Consensus 89 ~~~~~~~~~~~~~iidg~~~~-~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~ 167 (215)
+...+.. .-.+.+..+... +..+.....+....+.+-+|+++|.+++..|--+. -....-...++.|-
T Consensus 95 VaKLFAD--ag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKG------LYK~ARaGkIKgFT--- 163 (207)
T KOG0635|consen 95 VAKLFAD--AGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKG------LYKLARAGKIKGFT--- 163 (207)
T ss_pred HHHHHhc--cceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchh------HHHHHhcccccccc---
Confidence 3333322 223333332222 12233333322223456899999999999884321 10100011112222
Q ss_pred hhHHHHHHhc-CcEEEEc--CCCCHHHHHHHHHHhhCCC
Q 028025 168 LPVVQYYEAK-GKVRKID--AAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 168 ~~~~~~~~~~-~~~~~id--~~~~~~e~~~~i~~~l~~~ 203 (215)
.+...|+.+ +.-+++. ...++++..+.|..++.+.
T Consensus 164 -GIddPYEaP~~cEi~l~~~~~~sp~~mae~iv~YL~~k 201 (207)
T KOG0635|consen 164 -GIDDPYEAPLNCEIVLKSHESSSPEEMAEIIVSYLDNK 201 (207)
T ss_pred -cCCCcccCCCCcEEEEccCCCCCHHHHHHHHHHHHhhc
Confidence 223334433 2233333 3556777999999888754
No 172
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.80 E-value=9.6e-09 Score=76.54 Aligned_cols=126 Identities=17% Similarity=0.256 Sum_probs=69.8
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHHHH-------HHHHc--CCCcH---HHH---HHHH
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLR-------AEIKS--GSENG---TMI---QNMI 74 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~~~-------~~~~~--~~~~~---~~~---~~~~ 74 (215)
....|++|+|.|++|+||||+|+.|+..+. ...+..|-+.. .-+-. |.+.. ..+ ...+
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~v 157 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDV 157 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHH
Confidence 456799999999999999999999988774 12222222211 11100 21111 111 1222
Q ss_pred HcCCC-CC----HHHHHHHHHHHHHcc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 75 KEGKI-VP----SEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 75 ~~~~~-~~----~~~~~~~~~~~~~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
+.+.. +. +......+.....-. ..+.+|++|...-.... .|.. ...-+|+.||++++.+.+.+|+.+|
T Consensus 158 K~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~-p~~~-~sdffDfSIyvDa~~~~le~wyi~R 231 (283)
T COG1072 158 KAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGE-PWLF-LSDFFDFSIYVDADEELLEERYIER 231 (283)
T ss_pred hcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCC-cccc-ccccceEEEEecCCHHHHHHHHHHH
Confidence 22222 11 111122221221111 26788999854322221 2222 4556899999999999999999998
No 173
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.72 E-value=7.4e-07 Score=61.72 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=49.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC-CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEE
Q 028025 24 VFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (215)
Q Consensus 24 I~i~G~~gsGKsTla~~La~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (215)
|+=.+.+||||||++.+|++-|| |.++..|++.. + ....+...+-+.+......+|+
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~--------------------k--~~~~f~~~~l~~L~~~~~~vVi 59 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITG--------------------K--RKPKFIKAVLELLAKDTHPVVI 59 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCC--------------------C--CHHHHHHHHHHHHhhCCCCEEE
Confidence 55578999999999999999999 99998877411 1 1111233333444334488999
Q ss_pred EeCCCCCHHHHHHHHH
Q 028025 103 IDGFPRNEENRAAFEA 118 (215)
Q Consensus 103 idg~~~~~~~~~~~~~ 118 (215)
.|........+..+..
T Consensus 60 aDRNNh~~reR~ql~~ 75 (168)
T PF08303_consen 60 ADRNNHQKRERKQLFE 75 (168)
T ss_pred EeCCCchHHHHHHHHH
Confidence 9987766665555443
No 174
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.71 E-value=1.3e-07 Score=67.91 Aligned_cols=114 Identities=15% Similarity=0.201 Sum_probs=58.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCC-C------cHHHHH--HH---HHcC-------CCCCHH
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS-E------NGTMIQ--NM---IKEG-------KIVPSE 83 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~-~------~~~~~~--~~---~~~~-------~~~~~~ 83 (215)
+|.|.|..|||++|+|+.||+++|+.+++. +++........ . ..+... .. +..+ ......
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 689999999999999999999999999998 66655443311 0 111111 11 1111 111112
Q ss_pred HHHHHHHHHHHccC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 84 VTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
.......+.+.... ..++|+.|.. ...+. ......+.|+|.+|.+...+|+.++
T Consensus 80 ~~~~~~~~~i~~la~~~~~Vi~GR~-----a~~il--~~~~~~l~V~i~A~~~~Rv~ri~~~ 134 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCVIVGRC-----ANYIL--RDIPNVLHVFIYAPLEFRVERIMER 134 (179)
T ss_dssp HHHHHHHHHHHHHHH---EEEESTT-----HHHHT--TT-TTEEEEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEEecC-----Hhhhh--CCCCCeEEEEEECCHHHHHHHHHHH
Confidence 22222222222211 3466666643 12222 3333457999999999999999987
No 175
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.66 E-value=5.2e-08 Score=68.93 Aligned_cols=37 Identities=27% Similarity=0.532 Sum_probs=26.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 62 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~ 62 (215)
.|+|+|++|+|||||++.|++. |+.++ .+..+..+..
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~ 37 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIEE 37 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHH
Confidence 4899999999999999999998 88877 4656665544
No 176
>PRK06761 hypothetical protein; Provisional
Probab=98.60 E-value=2.7e-06 Score=64.93 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
.++|+|+|+|||||||+++.|++.++..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 4689999999999999999999999743
No 177
>PHA03135 thymidine kinase; Provisional
Probab=98.59 E-value=2.4e-06 Score=66.15 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+-.+|+|.|+.|+||||+++.|++..
T Consensus 8 ~~~~rIYlDG~~GvGKTT~~~~l~~~~ 34 (343)
T PHA03135 8 AQLIRVYLDGPFGIGKTSMLNEMPDHS 34 (343)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 556789999999999999999998853
No 178
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.58 E-value=2e-07 Score=63.92 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
+|+|.||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999999864
No 179
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.55 E-value=9.3e-07 Score=75.85 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
+..+|++.|.||+||||+++.|++.+++..+
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~ 244 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGL 244 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCC
Confidence 4668999999999999999999999965433
No 180
>PHA03134 thymidine kinase; Provisional
Probab=98.53 E-value=2.1e-05 Score=60.99 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=69.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh--C--CeEeeH----------HHHHHHHHHc------CCCcHH---HHHHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF--G--YTHLSA----------GDLLRAEIKS------GSENGT---MIQNMI 74 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~--~--~~~i~~----------~~~~~~~~~~------~~~~~~---~~~~~~ 74 (215)
+.+-.+|+|.|+.|.||||+++.|+..- + ..++.. .|.+.....- +.-... .+....
T Consensus 10 ~~~~~rvYlDG~~GvGKTT~~~~l~~~~~~~~~vl~~pEPM~YWr~~f~~d~i~~Iy~~q~r~~~G~~s~~~aa~~~a~~ 89 (340)
T PHA03134 10 QVRIVRIYLDGAYGIGKSTTGRVMASAASGGGPTLYFPEPMAYWRTLFETDVVSGIYDAQNRKQQGSLAAEDAAGITAHY 89 (340)
T ss_pred cccEEEEEEeCCCcCCHHHHHHHHHHhccCCCceEEecCcHHHHHHHhhhhHHHHHHHHHhHHhccCcchhHHHHHHHHH
Confidence 3556789999999999999999997642 2 222221 1222222111 111000 111111
Q ss_pred HcCCCCCHHHHHHHHHHHHHc-c------CCCeEEEeCCCCC----------------HHHHHHHHHhc-CCCC-cEEEE
Q 028025 75 KEGKIVPSEVTIKLLQKAMEE-S------GNDKFLIDGFPRN----------------EENRAAFEAVT-KIEP-EFVLF 129 (215)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-~------~~~~~iidg~~~~----------------~~~~~~~~~~~-~~~~-~~~i~ 129 (215)
+.....|.......+...+.. . +...+|+|.+|.. ......+.... ...| +-+|+
T Consensus 90 Q~~fatP~~~~~~~~~~~~~~~~~~~~~~pd~~vI~DRHPlsA~vcFP~ar~~~G~ls~~~~~~l~~~~p~~~pG~niVl 169 (340)
T PHA03134 90 QARFATPYLILHDRLSTLFGPPSLARGGRPDVTLVFDRHPVASCVCFPLARYLLGDMSACALLALAATLPREPPGGNLVV 169 (340)
T ss_pred HHHhcChHHHHHHHHHHhcCCCCCCCCCCCCeeeeeccCCCCccccchHHHHhcCCCCHHHHHHHHHhCCCCCCCCeEEE
Confidence 222223333333334433331 0 1467899987754 12222222101 1224 78999
Q ss_pred EecCHHHHHHHHhhccCCCCCCc
Q 028025 130 FDCSEEEMERRILNRNQGREDDN 152 (215)
Q Consensus 130 L~~~~e~~~~R~~~r~~~~~~~~ 152 (215)
++.++++..+|+.+| +|+.+.
T Consensus 170 ~~l~~~e~~~Rl~~R--~R~gE~ 190 (340)
T PHA03134 170 TTLNPDEHLRRLRAR--ARIGEQ 190 (340)
T ss_pred EeCCHHHHHHHHHHc--CCCccc
Confidence 999999999999999 555543
No 181
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.50 E-value=1.2e-07 Score=73.30 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=33.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~ 55 (215)
.++++|+|+||+||||||+|..|++.++..+++.|.+
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 3567999999999999999999999999999998773
No 182
>PHA03138 thymidine kinase; Provisional
Probab=98.49 E-value=2.9e-06 Score=65.67 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+-.+|+|.|+.|+||||+++.+.+.+
T Consensus 11 ~~~riYleG~~GvGKTT~~~~~l~~~ 36 (340)
T PHA03138 11 CILRIYLDGAFGIGKTTAAEAFLHGF 36 (340)
T ss_pred cEEEEEEECCCCcCHHhHHHHHHHhh
Confidence 45679999999999999998776654
No 183
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.43 E-value=2.9e-07 Score=62.46 Aligned_cols=28 Identities=25% Similarity=0.643 Sum_probs=25.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 24 VFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 24 I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
|+|.||||+||||+++.+++.++..++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~ 28 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIE 28 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccc
Confidence 6899999999999999999999975544
No 184
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.43 E-value=6.9e-06 Score=65.83 Aligned_cols=108 Identities=25% Similarity=0.390 Sum_probs=58.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh----CC-eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC--CCCHHHHHHHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF----GY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPSEVTIKLLQKA 92 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~----~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 92 (215)
++.+|++.||+||||||++..|+..+ |. ..+...|.+|.... +.+..+..... ...... ...+...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~------eQLk~yAe~lgvp~~~~~~-~~~l~~~ 294 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAI------EQLKRYADTMGMPFYPVKD-IKKFKET 294 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHH------HHHHHHHHhcCCCeeehHH-HHHHHHH
Confidence 56789999999999999999999765 21 23333455554321 12222222111 111111 2233333
Q ss_pred HHccCCCeEEEe--CCC-CCHHHHHHHHHhc---C--CCCcEEEEEecCH
Q 028025 93 MEESGNDKFLID--GFP-RNEENRAAFEAVT---K--IEPEFVLFFDCSE 134 (215)
Q Consensus 93 ~~~~~~~~~iid--g~~-~~~~~~~~~~~~~---~--~~~~~~i~L~~~~ 134 (215)
+.....+.+++| |++ ........+..+. . .....++.|.+..
T Consensus 295 l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 295 LARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 433446889999 554 4456666665531 1 1224466666644
No 185
>PLN02840 tRNA dimethylallyltransferase
Probab=98.42 E-value=2.8e-07 Score=73.68 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=33.0
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHH
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~ 54 (215)
...++++|+|.||+||||||++..|+++++..+++.|.
T Consensus 17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 34567789999999999999999999999988887754
No 186
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=98.42 E-value=2.6e-05 Score=53.56 Aligned_cols=171 Identities=14% Similarity=0.128 Sum_probs=94.1
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC--CeEeeHHHHHHHHHHcC--CCcHHHHHH-HHHcCCC----CCHHHHHH
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSG--SENGTMIQN-MIKEGKI----VPSEVTIK 87 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~----~~~~~~~~ 87 (215)
.+.+..+|++.|.+-||||++|.++.+-+. +.++-.|.+....++.. ...+..... ...++.. .+..+...
T Consensus 19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~ 98 (205)
T COG3896 19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILEL 98 (205)
T ss_pred CCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHH
Confidence 345678999999999999999999977774 66666654444332221 111100001 0011111 11111111
Q ss_pred HH---HHHHHc--cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028025 88 LL---QKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV 162 (215)
Q Consensus 88 ~~---~~~~~~--~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~ 162 (215)
.+ +..+.. ..+..++.|.+..+.++..........-+..++-+.+|.|+..+|-..|....++...- .
T Consensus 99 ~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~dR~pG~~rg----~--- 171 (205)
T COG3896 99 AMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRGDRHPGWNRG----S--- 171 (205)
T ss_pred HHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcCCcCcchhhh----h---
Confidence 11 122221 12788999998888777766555333344568899999999999988761111111110 1
Q ss_pred HhhcchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhC
Q 028025 163 FLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFT 201 (215)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~ 201 (215)
++.. .....+-+-+|+ ..++.|....|.+.++
T Consensus 172 ~r~v-------Ha~~~YDlevDTS~~tp~EcAr~i~~r~q 204 (205)
T COG3896 172 ARAV-------HADAEYDLEVDTSATTPHECAREIHERYQ 204 (205)
T ss_pred HHHh-------cCCcceeeeecccCCCHHHHHHHHHHHhc
Confidence 1111 111222356666 5588999999887654
No 187
>PF13173 AAA_14: AAA domain
Probab=98.40 E-value=4.2e-06 Score=56.69 Aligned_cols=99 Identities=13% Similarity=0.246 Sum_probs=58.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (215)
..+++|.||.||||||+++.+++.+. +.+++.++.-...... ++ ..+.+.+... .
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~------------------~~--~~~~~~~~~~-~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD------------------PD--LLEYFLELIK-P 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh------------------hh--hHHHHHHhhc-c
Confidence 46799999999999999999998875 6777665533221000 00 1222222211 1
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHH
Q 028025 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140 (215)
Q Consensus 97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R 140 (215)
+...+++|-.-....+...+..+....++..|++..+......+
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSK 104 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhh
Confidence 36778888754333444444443222256778888877665543
No 188
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=98.39 E-value=5.7e-06 Score=59.84 Aligned_cols=120 Identities=13% Similarity=0.179 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHH-HHcC--CCcHHHH---------HHHHHcCCCCCHHHHHHHH
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSG--SENGTMI---------QNMIKEGKIVPSEVTIKLL 89 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~-~~~~--~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 89 (215)
.+++|.||+|+|||.+|-.||+++|.++++.|.+..-. +.-+ .+....+ ...+.+|. ++.+...+.+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~L 80 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERL 80 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHH
Confidence 47899999999999999999999999999986653221 0111 1111111 12334444 4444445555
Q ss_pred HHHHHccC-CCeEEEeCCCCCHHHHHHHHHhcCC-CCc--EEEEEecCH-HHHHHHHhhc
Q 028025 90 QKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKI-EPE--FVLFFDCSE-EEMERRILNR 144 (215)
Q Consensus 90 ~~~~~~~~-~~~~iidg~~~~~~~~~~~~~~~~~-~~~--~~i~L~~~~-e~~~~R~~~r 144 (215)
...+.+.. +.++|++| .++.....+.+-.+. .+. .+.++..+. +.-..|..+|
T Consensus 81 i~~v~~~~~~~~~IlEG--GSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 81 ISEVNSYSAHGGLILEG--GSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp HHHHHTTTTSSEEEEEE----HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred HHHHHhccccCceEEeC--chHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence 55555544 88999998 444444444432333 222 256666654 5566677776
No 189
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.5e-06 Score=71.59 Aligned_cols=39 Identities=31% Similarity=0.536 Sum_probs=31.9
Q ss_pred cccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (215)
Q Consensus 14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~ 52 (215)
.++--..|.=|++.||||||||.||+++|.+++..+++.
T Consensus 216 ~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 216 SSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred hhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEee
Confidence 333334566799999999999999999999999877763
No 190
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.38 E-value=5.3e-06 Score=66.79 Aligned_cols=37 Identities=30% Similarity=0.296 Sum_probs=30.3
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
.+++--...|+|.|++|||||||++.|++.+|...+.
T Consensus 213 ~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 213 EVRPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred HHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 3334457789999999999999999999999876543
No 191
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.37 E-value=4.3e-07 Score=62.45 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
...+.|+|+|+|||||||+++.+++.+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 3467899999999999999999999884
No 192
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=98.33 E-value=9.5e-05 Score=54.84 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=80.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (215)
+.|.+|++.|..||||..+.+.|.+.++ +.+.+.+. +.. .+.....+.+.-..
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~----------pt~--------------eE~~~p~lwRfw~~ 84 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPK----------PSD--------------RERTQWYFQRYVQH 84 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCC----------CCH--------------HHHcChHHHHHHHh
Confidence 4688999999999999999999999996 33332211 110 11112222222222
Q ss_pred cC--CCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC--
Q 028025 96 SG--NDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRE-- 149 (215)
Q Consensus 96 ~~--~~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~-- 149 (215)
.+ |+..|+|+.... ...+..|.+. .....-+-+||.+|.++..+|+.+| ..+..
T Consensus 85 lP~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~W 164 (230)
T TIGR03707 85 LPAAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQW 164 (230)
T ss_pred CCCCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccc
Confidence 22 777777763322 1111222221 2334446899999999999999988 22211
Q ss_pred CCcHHHH--HHHHHHHhhcchhHHHHHHh-cCcEEEEcCCC
Q 028025 150 DDNVETI--RKRFKVFLESSLPVVQYYEA-KGKVRKIDAAK 187 (215)
Q Consensus 150 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~id~~~ 187 (215)
.....+. .+++..|......++..-.. ..+-++|+++.
T Consensus 165 k~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~d 205 (230)
T TIGR03707 165 KLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDD 205 (230)
T ss_pred cCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence 1222222 23444555544444332222 34788998864
No 193
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.29 E-value=2.2e-05 Score=57.31 Aligned_cols=170 Identities=19% Similarity=0.214 Sum_probs=84.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHc---CC----CcHHHHHHHHHcCCCCCHHHH------
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GS----ENGTMIQNMIKEGKIVPSEVT------ 85 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~------ 85 (215)
...-|+|+||+|+||+|+.+.|-++++. ..++.....+..... +. -....+.....+..++.....
T Consensus 36 ~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yG 115 (231)
T KOG0707|consen 36 DFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYG 115 (231)
T ss_pred CCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCC
Confidence 3377999999999999999999999973 223322222210000 00 011222222222222211111
Q ss_pred --HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcE-EEEEe-cCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028025 86 --IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF-VLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFK 161 (215)
Q Consensus 86 --~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~-~i~L~-~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~ 161 (215)
...++.... .++..++|=. ....... .....+. .+|+. .+...+.+|+..| -.+..+.+.+|+.
T Consensus 116 tsi~av~~~~~--~gk~~ildId---~qg~~~i---~~~~~~~i~i~~~pps~~~~e~rl~~r----gte~~~~l~~r~~ 183 (231)
T KOG0707|consen 116 TSIAAVQRLML--SGKVCILDID---LQGVQPI---RATSLDAIYIFIKPPSIKILEERLRAR----GTETEESLLKRLK 183 (231)
T ss_pred chHHHHHHHHh--cCCcceeehh---hcCceee---ecCCCceEEEEecCCcchhHHHHhhcc----CcchHHHHHHHHH
Confidence 122222222 2666676621 1111111 1122332 55555 5667799999876 4456678888877
Q ss_pred HHhhcchhHHHHHHhcC-cEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025 162 VFLESSLPVVQYYEAKG-KVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 162 ~~~~~~~~~~~~~~~~~-~~~~id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
..+...... ..++ ..+++.++..+++....+..++..-..
T Consensus 184 sa~~e~~~~----~~~g~~d~~~~ns~~lee~~kel~~~~~~~~~ 224 (231)
T KOG0707|consen 184 SAEEEFEIL----ENSGSFDLVIVNSDRLEEAYKELEIFISSDDK 224 (231)
T ss_pred hhhhhhccc----cCCccccceecCCCchhhhhhhhhhhhhHHHH
Confidence 433332222 2222 223343436888888888776654433
No 194
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.4e-05 Score=64.22 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=70.2
Q ss_pred ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH--HHHHHHHHHcC---------------C--CcHHHHHHH
Q 028025 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA--GDLLRAEIKSG---------------S--ENGTMIQNM 73 (215)
Q Consensus 13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~--~~~~~~~~~~~---------------~--~~~~~~~~~ 73 (215)
+..+-...|.-|++.|||||||||+|+++|+.-+..+++. -+++..+.-.. . -+.+++...
T Consensus 460 F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi 539 (693)
T KOG0730|consen 460 FARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDAL 539 (693)
T ss_pred HHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhH
Confidence 3445556788899999999999999999999987666653 23332221110 0 111222211
Q ss_pred H-HcCCCCCHHHHHHHHHHHHHccC-----CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 74 I-KEGKIVPSEVTIKLLQKAMEESG-----NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 74 ~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
- .++.... ......+...+.+.+ ..++|+.+..+....-..+. .....|.+||+..|.......+.+-
T Consensus 540 ~~~R~g~~~-~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALl--RPGRlD~iiyVplPD~~aR~~Ilk~ 613 (693)
T KOG0730|consen 540 AGSRGGSSS-GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALL--RPGRLDRIIYVPLPDLEARLEILKQ 613 (693)
T ss_pred hhccCCCcc-chHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHc--CCcccceeEeecCccHHHHHHHHHH
Confidence 1 1111111 111222333333222 35666666543322212222 4456888999999998887777654
No 195
>PLN02748 tRNA dimethylallyltransferase
Probab=98.28 E-value=8.2e-07 Score=72.24 Aligned_cols=37 Identities=32% Similarity=0.515 Sum_probs=33.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~ 54 (215)
..++.+|+|.||+|||||||+..||+.++..+|+.|.
T Consensus 19 ~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 19 KGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 3567799999999999999999999999999999875
No 196
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.26 E-value=7.3e-07 Score=68.22 Aligned_cols=33 Identities=18% Similarity=0.447 Sum_probs=30.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~ 55 (215)
+|+|.||+|||||+++..|++.++..+++.|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 489999999999999999999999999998763
No 197
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=98.24 E-value=2.8e-06 Score=58.88 Aligned_cols=77 Identities=26% Similarity=0.371 Sum_probs=46.3
Q ss_pred cCCC-CcEEEEEecCHHHHHHHHhhccCCCCCC--cHHHHHHHHH-HHhhcchhHHHHHHhcCcEEEEcCCC-CHHHHHH
Q 028025 120 TKIE-PEFVLFFDCSEEEMERRILNRNQGREDD--NVETIRKRFK-VFLESSLPVVQYYEAKGKVRKIDAAK-PVAEVFD 194 (215)
Q Consensus 120 ~~~~-~~~~i~L~~~~e~~~~R~~~r~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~~~-~~~e~~~ 194 (215)
..+. ||++|||++|++++.+|+.+| ||+.+ ...+..++++ ..+..+.. .+. ..+++++|++. ++.+..+
T Consensus 63 ~~~~~pdl~IYL~~~~e~~~~RI~kR--gR~~E~~i~~~Yl~~L~~~~y~~~~~---~~~-~~~vl~id~~~~d~~~~~~ 136 (146)
T PF01712_consen 63 EIPKSPDLIIYLDASPETCLERIKKR--GREEEKNIPLEYLERLHEEAYEDWLK---KYD-STPVLVIDADNLDFVENPE 136 (146)
T ss_dssp HCCHH-SEEEEEE--HHHHHHHHHHC--TTGGGTTS-HHHHHHHHHHHHCCHHS---CCT-TTTGCEEEECEEECCSHHT
T ss_pred HhhccCCeEEEEeCCHHHHHHHHHHh--CCchhcCCCHHHHHHHhHHHHHHHHH---hCC-CCceEEEECCccCcccCHH
Confidence 4566 999999999999999999999 66555 2445556666 44433221 111 23567777744 5666665
Q ss_pred HHHHhhCC
Q 028025 195 AVKAVFTP 202 (215)
Q Consensus 195 ~i~~~l~~ 202 (215)
.+...+.+
T Consensus 137 ~~~~~~~~ 144 (146)
T PF01712_consen 137 DIEQVINQ 144 (146)
T ss_dssp THHHHHCC
T ss_pred HHHHHHHh
Confidence 65555544
No 198
>PRK09087 hypothetical protein; Validated
Probab=98.23 E-value=8.4e-06 Score=60.71 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=32.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~ 59 (215)
...++|.|++|||||+|++.+++..+..+++.+++..+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~ 82 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDA 82 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHH
Confidence 345899999999999999999999999999886554444
No 199
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=98.22 E-value=2.3e-06 Score=62.57 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeE-eeHHHHHHHHHHc
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIKS 62 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~-i~~~~~~~~~~~~ 62 (215)
++|+|+|.|||||||+++.+.+. +..+ ++.++.++..+..
T Consensus 1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~~ 41 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILAI 41 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHHH
Confidence 58999999999999999999665 4445 8888888877654
No 200
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.21 E-value=5.3e-06 Score=56.20 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=54.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh--------CCe--EeeHHHHHHHHHHcCCCcHHHHHHHHHcCCC--CCHHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF--------GYT--HLSAGDLLRAEIKSGSENGTMIQNMIKEGKI--VPSEVTIK 87 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~--------~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 87 (215)
...+++|.|++|+|||++++.+++.+ ... ++...... ....+...+...+..... .......+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-----TPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-----SHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-----CHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 35679999999999999999999987 332 33221110 001112222222222222 23344456
Q ss_pred HHHHHHHccCCCeEEEeCCCC--CHHHHHHHHHhcCCCCcEEEEEecCH
Q 028025 88 LLQKAMEESGNDKFLIDGFPR--NEENRAAFEAVTKIEPEFVLFFDCSE 134 (215)
Q Consensus 88 ~~~~~~~~~~~~~~iidg~~~--~~~~~~~~~~~~~~~~~~~i~L~~~~ 134 (215)
.+.+.+.......+|+|..-. .......+.. ..-...+.+.|-..+
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRS-LLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HTCSCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HHhCCCCeEEEEECh
Confidence 777777665445789997421 2333444444 222555555554443
No 201
>PF05729 NACHT: NACHT domain
Probab=98.20 E-value=1e-05 Score=56.92 Aligned_cols=23 Identities=35% Similarity=0.719 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+++|.|.||+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 68999999999999999999888
No 202
>PRK14974 cell division protein FtsY; Provisional
Probab=98.20 E-value=6.2e-06 Score=64.72 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+|.+|+++|++||||||++..|+..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458899999999999999888888766
No 203
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.18 E-value=1.2e-06 Score=62.19 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC--CeEeeH
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA 52 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~ 52 (215)
++|+|.|+|||||||+|..|++.++ ..++..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat 34 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIAT 34 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence 4799999999999999999999986 444444
No 204
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.18 E-value=1.8e-06 Score=67.70 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
.+..+++|.|||||||||+|+.|++.++.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35678999999999999999999999963
No 205
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.17 E-value=1.7e-06 Score=59.01 Aligned_cols=28 Identities=32% Similarity=0.615 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
+..++|.|||||||||+++.++..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4579999999999999999999999653
No 206
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.16 E-value=1.2e-05 Score=64.92 Aligned_cols=39 Identities=33% Similarity=0.619 Sum_probs=30.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh---CC--eEeeHHHHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLR 57 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~---~~--~~i~~~~~~~ 57 (215)
..+|.+|+++|++||||||++..||..+ |. .++++ |.+|
T Consensus 97 ~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~-D~~R 140 (429)
T TIGR01425 97 KGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA-DTFR 140 (429)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC-cccc
Confidence 3568899999999999999999999877 43 44444 5455
No 207
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=98.16 E-value=0.0002 Score=58.88 Aligned_cols=146 Identities=12% Similarity=0.138 Sum_probs=81.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (215)
.+.+.+|++.|..||||++..+.|.+.++ +.+..... +. +.+.....+.+...
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~----------P~--------------~eE~~~~flwRfw~ 92 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGR----------PS--------------DEERERPPMWRFWR 92 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCC----------CC--------------HHHhcCcHHHHHHH
Confidence 35788999999999999999999999995 33332211 00 01111222222222
Q ss_pred ccC--CCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC-
Q 028025 95 ESG--NDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRE- 149 (215)
Q Consensus 95 ~~~--~~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~- 149 (215)
..+ |...|+|+.... ...+..|.+. .....-+-+||.+|.++..+|+..| ..+..
T Consensus 93 ~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~ 172 (493)
T TIGR03708 93 RLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETR 172 (493)
T ss_pred hCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence 222 778888864322 1111122221 2334446899999999999999998 22211
Q ss_pred -CCcHHHHH--HHHHHHhhcchhHHHHHH-hcCcEEEEcCCC
Q 028025 150 -DDNVETIR--KRFKVFLESSLPVVQYYE-AKGKVRKIDAAK 187 (215)
Q Consensus 150 -~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~ 187 (215)
...+.++. +++..|......++..-. ...+-++|+++.
T Consensus 173 WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~add 214 (493)
T TIGR03708 173 WRVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGED 214 (493)
T ss_pred cCCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence 12333333 334455554444433222 223788998864
No 208
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=98.16 E-value=3.4e-05 Score=54.86 Aligned_cols=34 Identities=29% Similarity=0.593 Sum_probs=25.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC------CeEeeHHHHH
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLL 56 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~------~~~i~~~~~~ 56 (215)
++.+.|.|+|||||+++++--.-. ..+.+.||+.
T Consensus 3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFl 42 (291)
T KOG4622|consen 3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFL 42 (291)
T ss_pred eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 578999999999999998743321 4566667765
No 209
>PHA03133 thymidine kinase; Provisional
Probab=98.16 E-value=0.00023 Score=55.66 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
+-.+|+|.|+.|.||||+++.+...++
T Consensus 39 ~~~rvYlDG~~GvGKTTt~~~l~~a~~ 65 (368)
T PHA03133 39 ALLRIYVDGPHGLGKTTTAAALAAALG 65 (368)
T ss_pred eEEEEEEeCCCcCCHHHHHHHHHHhhC
Confidence 356799999999999999988888875
No 210
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.7e-06 Score=66.08 Aligned_cols=26 Identities=23% Similarity=0.685 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
..+|.+.||||.||||+|++||+++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 56899999999999999999999995
No 211
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=2.7e-06 Score=65.32 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~ 55 (215)
++.+|+|.||+|||||-+|-.||+++|..+|+.|.+
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 467899999999999999999999999999998765
No 212
>PLN02796 D-glycerate 3-kinase
Probab=98.14 E-value=2e-06 Score=67.07 Aligned_cols=38 Identities=29% Similarity=0.332 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL 56 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~ 56 (215)
.+|.+|.|.|++||||||+++.|+..+. ...++.|+++
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4689999999999999999999998884 3456666665
No 213
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=98.14 E-value=0.00031 Score=53.17 Aligned_cols=144 Identities=13% Similarity=0.136 Sum_probs=79.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (215)
.|.+|++.|..||||..+.+.|.+.++ +.+.+.+. +.. .+.....+.+.....
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~----------Pt~--------------eE~~~p~lWRfw~~l 110 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKA----------PSA--------------EELDHDFLWRIHKAL 110 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCC----------CCH--------------HHHcCchHHHHHHhC
Confidence 488999999999999999999999985 33332211 111 011111222222222
Q ss_pred C--CCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCC--
Q 028025 97 G--NDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRED-- 150 (215)
Q Consensus 97 ~--~~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~-- 150 (215)
+ |+..|+|+.... ...+..|.+. .....-+-+||.+|.++..+|+.+| ..+...
T Consensus 111 P~~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk 190 (264)
T TIGR03709 111 PERGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWK 190 (264)
T ss_pred CCCCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCccccc
Confidence 2 778888863322 1111122211 2333446899999999999999988 222111
Q ss_pred CcHHH--HHHHHHHHhhcchhHHHHHH-hcCcEEEEcCCC
Q 028025 151 DNVET--IRKRFKVFLESSLPVVQYYE-AKGKVRKIDAAK 187 (215)
Q Consensus 151 ~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~ 187 (215)
....+ ..+++..|......++..-. ...+.++|+++.
T Consensus 191 ~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~d 230 (264)
T TIGR03709 191 FSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADD 230 (264)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence 22222 23344555554444433222 134788998864
No 214
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.12 E-value=3.6e-06 Score=56.93 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
...+|++.|+.||||||+++.+++.++.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4568999999999999999999999985
No 215
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.11 E-value=5.9e-05 Score=61.18 Aligned_cols=40 Identities=38% Similarity=0.643 Sum_probs=30.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh----C--CeEeeHHHHHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRA 58 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~----~--~~~i~~~~~~~~ 58 (215)
..+|.+|++.|++||||||++..||..+ | ..++++ |.+|.
T Consensus 96 ~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~-D~~R~ 141 (428)
T TIGR00959 96 KKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVAC-DLYRP 141 (428)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEec-cccch
Confidence 4568899999999999999999888774 2 345655 44544
No 216
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=98.11 E-value=4e-06 Score=64.60 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~ 55 (215)
..+++|+|.||+|||||.||-.||++ +..+|++|.+
T Consensus 2 ~~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 2 KENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 34568999999999999999999999 5589998664
No 217
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.11 E-value=3.9e-06 Score=57.63 Aligned_cols=27 Identities=30% Similarity=0.603 Sum_probs=24.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025 24 VFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 24 I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
|+|.|+||+|||++++.+++.++..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 789999999999999999999986554
No 218
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.10 E-value=3.6e-06 Score=61.60 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeE
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~ 49 (215)
..-+++.||||+||||+|+.+|+.++..+
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCe
Confidence 45689999999999999999999998543
No 219
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.10 E-value=2.5e-05 Score=63.52 Aligned_cols=27 Identities=37% Similarity=0.628 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+|.+|+++|++||||||++..||..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 568899999999999999999999887
No 220
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=1.2e-05 Score=62.96 Aligned_cols=125 Identities=26% Similarity=0.424 Sum_probs=69.6
Q ss_pred cccccccccCCCCCeEEEEEcCCCCChHHHHHHHHHHh---CC-eEeeHHHHHHHHHHcCCCcHHHHHHHHHcC------
Q 028025 8 PVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKSGSENGTMIQNMIKEG------ 77 (215)
Q Consensus 8 p~~~~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~---~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 77 (215)
|-+.+++. ..++|.+|++.|.-||||||.|..||-++ |+ ..+-++|.+|..... +.-+.....+
T Consensus 89 p~~~~~~~-~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfD-----QLkqnA~k~~iP~ygs 162 (483)
T KOG0780|consen 89 PGKSALQP-KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFD-----QLKQNATKARVPFYGS 162 (483)
T ss_pred CCCccccc-ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHH-----HHHHHhHhhCCeeEec
Confidence 43333332 34679999999999999999999999888 33 334445666654221 1111111111
Q ss_pred --CCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHh----cCCCCcE-EEEEecCHHHHHH
Q 028025 78 --KIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV----TKIEPEF-VLFFDCSEEEMER 139 (215)
Q Consensus 78 --~~~~~~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~----~~~~~~~-~i~L~~~~e~~~~ 139 (215)
..-|..+..+-+. ...+.....+|+|...+-......+.+. ....||. ++.++++......
T Consensus 163 yte~dpv~ia~egv~-~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae 230 (483)
T KOG0780|consen 163 YTEADPVKIASEGVD-RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE 230 (483)
T ss_pred ccccchHHHHHHHHH-HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH
Confidence 1112222233333 3334448899999765443333333333 4566777 5556777655443
No 221
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.08 E-value=3.2e-06 Score=67.39 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL 56 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~ 56 (215)
.+|.+|.|.|++||||||+++.|...+. ...++.||++
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 4689999999999999999999987763 4567777766
No 222
>CHL00181 cbbX CbbX; Provisional
Probab=98.08 E-value=2.8e-05 Score=59.98 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+.-+++.||||+||||+|+.+++.+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45568999999999999999998876
No 223
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.08 E-value=3.7e-06 Score=67.15 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG 53 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~ 53 (215)
.|..|++.||||+||||+|+.|++.++..++..+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 4577999999999999999999999998777765
No 224
>PRK10867 signal recognition particle protein; Provisional
Probab=98.08 E-value=5e-05 Score=61.66 Aligned_cols=40 Identities=30% Similarity=0.520 Sum_probs=29.8
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh----C--CeEeeHHHHHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRA 58 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~----~--~~~i~~~~~~~~ 58 (215)
..+|.+|+++|++||||||++..||..+ | ..++++ |.+|.
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~-D~~R~ 142 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA-DVYRP 142 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc-cccch
Confidence 4568899999999999999888887755 3 345666 44554
No 225
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=98.08 E-value=0.00019 Score=50.59 Aligned_cols=117 Identities=13% Similarity=0.074 Sum_probs=65.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCC---eEeeHHHHHHHHHHc--CCCc-------------HHHHHHHHHcCCCCCHHH
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKS--GSEN-------------GTMIQNMIKEGKIVPSEV 84 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~---~~i~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~ 84 (215)
+|+|+|-.+|||-|++..|.++++. .++...+-+...... +... ......+.+.........
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~ 80 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF 80 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence 5899999999999999999998874 245543333332222 1111 111111111111111112
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 85 ~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
+...+.. .....++|+.+. +....+..|.. ....--+.|-+++++++..+|.-..
T Consensus 81 F~r~~~~---~~~~~v~iIsD~-Rr~~dv~~f~~-~~g~~~~~VRV~AseetR~~Rgw~F 135 (182)
T TIGR01223 81 FCRKIVE---GISQPIWLVSDT-RRVSDIQWFRE-AYGAVTQTVRVVALEQSRQQRGWVF 135 (182)
T ss_pred HHHHHHh---ccCCCEEEEeCC-CcccHHHHHHH-HcCCceEEEEEecCHHHHHHHHHhc
Confidence 2222222 222457777764 34455666666 4444456899999999999997554
No 226
>COG4240 Predicted kinase [General function prediction only]
Probab=98.06 E-value=6.2e-06 Score=60.07 Aligned_cols=47 Identities=36% Similarity=0.388 Sum_probs=36.4
Q ss_pred cccccCCCCCeEEEEEcCCCCChHHHHHHHHHHh---C---CeEeeHHHHHHH
Q 028025 12 ADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---G---YTHLSAGDLLRA 58 (215)
Q Consensus 12 ~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~---~---~~~i~~~~~~~~ 58 (215)
+......++|.++.|+||-||||||++-.+...+ | ...+|.||++..
T Consensus 41 ap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlt 93 (300)
T COG4240 41 APWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLT 93 (300)
T ss_pred hhhhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcc
Confidence 3444556789999999999999999998876555 2 466788888753
No 227
>COG3911 Predicted ATPase [General function prediction only]
Probab=98.02 E-value=6.5e-05 Score=51.14 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeE
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~ 49 (215)
.+..+++++|.||+|||||..+|++ -|+..
T Consensus 7 nR~~~fIltGgpGaGKTtLL~aLa~-~Gfat 36 (183)
T COG3911 7 NRHKRFILTGGPGAGKTTLLAALAR-AGFAT 36 (183)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHH-cCcee
Confidence 4457899999999999999999966 45533
No 228
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.02 E-value=5.2e-06 Score=66.38 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG 53 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~ 53 (215)
.|..|+|.||||+||||+|+.|++.++..++..+
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD 82 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence 3578999999999999999999999998777664
No 229
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=5.4e-05 Score=60.63 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+|.+|++.||+|+||||.+..||..+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999876
No 230
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=98.01 E-value=0.00012 Score=54.37 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=72.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (215)
.|.+|+|.|..||||+.+.+.|.+.++ +.+.+.+.-..+. .....+.+.....
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE------------------------~~~p~lwRfw~~l 85 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEE------------------------LRRPFLWRFWRAL 85 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHH------------------------HTS-TTHHHHTTS
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhH------------------------cCCCcHHHHHHhC
Confidence 468999999999999999999988884 4444332111110 0011122222222
Q ss_pred C--CCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC--C
Q 028025 97 G--NDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRE--D 150 (215)
Q Consensus 97 ~--~~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~--~ 150 (215)
+ |+..|+|+.... .+.+..|.+. .....-+-+||..|.++..+|+.+| ..+.. .
T Consensus 86 P~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~wk 165 (228)
T PF03976_consen 86 PARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRWK 165 (228)
T ss_dssp --TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGGG
T ss_pred CCCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCcccccc
Confidence 2 888888864322 1111122221 2333446899999999999999998 22221 1
Q ss_pred CcHHHHHH--HHHHHhhcchhHHHHHH-hcCcEEEEcCCC
Q 028025 151 DNVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKIDAAK 187 (215)
Q Consensus 151 ~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~ 187 (215)
..+.+... .+..|......++..-. ...+-++|+++.
T Consensus 166 v~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~d 205 (228)
T PF03976_consen 166 VSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADD 205 (228)
T ss_dssp --HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SS
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCC
Confidence 22333222 34455554444433222 234788998863
No 231
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.01 E-value=0.00017 Score=59.59 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
..|.-|++.||||+|||++|+.+|..++..++.
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~ 289 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLR 289 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 356779999999999999999999999876554
No 232
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.00 E-value=3.5e-05 Score=59.44 Aligned_cols=88 Identities=30% Similarity=0.352 Sum_probs=58.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh---CC-eEeeHHHHHHHHHHc-CCCcHHHHHHHH-H-cCCCCCHHHHHHHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKS-GSENGTMIQNMI-K-EGKIVPSEVTIKLLQ 90 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~---~~-~~i~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 90 (215)
..+|.+|++.|..|+||||-..+||..| |+ .++.++|.+|..... ...+++...-.+ . ....-|.....+.++
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 4579999999999999999999999988 33 556678888876433 222222221111 1 112334556677777
Q ss_pred HHHHccCCCeEEEeCC
Q 028025 91 KAMEESGNDKFLIDGF 106 (215)
Q Consensus 91 ~~~~~~~~~~~iidg~ 106 (215)
++..+. ...+++|.-
T Consensus 216 ~Akar~-~DvvliDTA 230 (340)
T COG0552 216 AAKARG-IDVVLIDTA 230 (340)
T ss_pred HHHHcC-CCEEEEeCc
Confidence 776553 789999953
No 233
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=97.99 E-value=5e-05 Score=55.57 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=31.2
Q ss_pred CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
++.+|++|.....++ ..|.. .....|...|++++-+...+|..+|
T Consensus 235 ~rIvI~EGnYlLl~~-~~Wkd-i~k~~d~k~~idV~~~~a~~RVa~R 279 (323)
T KOG2702|consen 235 TRIVILEGNYLLLDQ-ENWKD-IYKTLDDKYKIDVDYEAAEERVAKR 279 (323)
T ss_pred ceEEEEeccEEEecC-ccHHH-HHHHhhhheeccccHHHHHHHHHHH
Confidence 678899985433322 33444 3333455699999999999999999
No 234
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=0.00015 Score=57.81 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+|.+|+|.|++||||||++..||..+
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 456899999999999999999999777
No 235
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.98 E-value=7.4e-06 Score=58.07 Aligned_cols=22 Identities=36% Similarity=0.770 Sum_probs=20.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 028025 24 VFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 24 I~i~G~~gsGKsTla~~La~~~ 45 (215)
|+|+|+||+||||+++.+.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999999998
No 236
>PRK06620 hypothetical protein; Validated
Probab=97.98 E-value=0.0002 Score=52.90 Aligned_cols=30 Identities=13% Similarity=0.025 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
..++|.||||||||++++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 568999999999999999999988865554
No 237
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.97 E-value=5.4e-05 Score=60.37 Aligned_cols=118 Identities=26% Similarity=0.364 Sum_probs=63.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHHHHHHHc-CCCcHHHHHH-HHHcC-CCCCHHHHHH
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKS-GSENGTMIQN-MIKEG-KIVPSEVTIK 87 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~~~~~~~-~~~~~~~~~~-~~~~~-~~~~~~~~~~ 87 (215)
+...+|.+|++.|.-||||||.|.+||.+| | ...+++ |++|.+... ....++.+.- .+..+ ..-|.++...
T Consensus 95 l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaa-D~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~ 173 (451)
T COG0541 95 LAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAA-DTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKA 173 (451)
T ss_pred cCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEec-ccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHH
Confidence 335678999999999999999999999988 2 233444 777765322 1111111100 11111 2223444455
Q ss_pred HHHHHHHccCCCeEEEeCCCCCH---HHHHHHHHh-cCCCCcE-EEEEecCHH
Q 028025 88 LLQKAMEESGNDKFLIDGFPRNE---ENRAAFEAV-TKIEPEF-VLFFDCSEE 135 (215)
Q Consensus 88 ~~~~~~~~~~~~~~iidg~~~~~---~~~~~~~~~-~~~~~~~-~i~L~~~~e 135 (215)
.++.+-.. ..+++|+|...+.. .-..++..+ ....|+- ++.+++...
T Consensus 174 al~~ak~~-~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 174 ALEKAKEE-GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred HHHHHHHc-CCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 55544333 26899999644322 222233322 3345555 555566443
No 238
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.97 E-value=6.5e-06 Score=59.60 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=24.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|+||+||||||+.+-| +.+
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRcl-N~L 51 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCL-NGL 51 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHH-HCC
Confidence 34457889999999999999999988 444
No 239
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.96 E-value=7.1e-06 Score=57.14 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=26.3
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++...++-+|.|+||+||||||+.+.+|.-.
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4445578899999999999999999998755
No 240
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.95 E-value=9.4e-06 Score=60.58 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++..+|.|+||||+|||||...|...+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 467899999999999999999999888
No 241
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00039 Score=54.84 Aligned_cols=33 Identities=27% Similarity=0.536 Sum_probs=28.1
Q ss_pred CCeE-EEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025 20 KPTV-VFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (215)
Q Consensus 20 ~~~~-I~i~G~~gsGKsTla~~La~~~~~~~i~~ 52 (215)
+|+. |++.||||+|||-||+++|..-+-.+|+.
T Consensus 243 rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 243 RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 4544 89999999999999999999999766663
No 242
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.95 E-value=1.2e-05 Score=57.04 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
.++.++.|+|++||||||+++.|...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 3566899999999999999999987774
No 243
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.95 E-value=9.9e-06 Score=61.76 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+...-+++.||||+||||+|+.+++.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 345668999999999999999999876
No 244
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.95 E-value=4.4e-05 Score=56.95 Aligned_cols=33 Identities=33% Similarity=0.365 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh------CCeEeeH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF------GYTHLSA 52 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~------~~~~i~~ 52 (215)
++..++|.|+||||||+++..++-+. +..+++.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 57899999999999999999865332 3456664
No 245
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.94 E-value=1e-05 Score=58.84 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
|.+|++.||+||||||.+-+||.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 68999999999999999999998883
No 246
>PRK09169 hypothetical protein; Validated
Probab=97.94 E-value=0.00024 Score=66.56 Aligned_cols=109 Identities=11% Similarity=0.058 Sum_probs=72.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHH-HcCCCCCHHHHHHHHHHHHHccCCC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGND 99 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (215)
...|+++|.+|+||||+++.|+..+++.+++.|..+.... +..+...+ ..| .+.+.-...+.+.+. . ..
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~------GrkI~rIFa~eG--~FRe~Eaa~V~Dllr-~-~v 2179 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKI------GKKIARIQALRG--LSPEQAAARVRDALR-W-EV 2179 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHh------CCCHHHHHHhcC--chHHHHHHHHHHHhc-C-Ce
Confidence 4579999999999999999999999999999887776642 22223333 234 555555666666653 1 22
Q ss_pred eEEEeCCCCCH-HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 100 KFLIDGFPRNE-ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 100 ~~iidg~~~~~-~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
++=.+|+.... .....+.. -.++||+..+.+++.+|+.+.
T Consensus 2180 VLSTGGGav~~~enr~~L~~-----~GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2180 VLPAEGFGAAVEQARQALGA-----KGLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred EEeCCCCcccCHHHHHHHHH-----CCEEEEEECCHHHHHHHhccC
Confidence 22233444333 33334443 346999999999999999754
No 247
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=97.94 E-value=1.6e-05 Score=61.62 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=60.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEe---eH-HHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH--HHHHHHHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL---SA-GDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT--IKLLQKAME 94 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 94 (215)
.--|+++|.+|+||||++-+|-+.+....| .. +|-+|.-+..+-.++..-. .+.. ..-+...+.
T Consensus 50 gctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edr----------eenirriaevaklfa 119 (627)
T KOG4238|consen 50 GCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDR----------EENIRRIAEVAKLFA 119 (627)
T ss_pred ceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhH----------HHHHHHHHHHHHHHh
Confidence 446999999999999999999888853333 22 3445544433222211000 0111 111222222
Q ss_pred ccCCCeEEEeCCCCCHH----HHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 95 ESGNDKFLIDGFPRNEE----NRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 95 ~~~~~~~iidg~~~~~~----~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
. ...+++-.|...+. ..+.+.+ ...-|.+-++++++.++|.+|-.+.
T Consensus 120 d--aglvcitsfispf~~dr~~arkihe-~~~l~f~ev~v~a~l~vceqrd~k~ 170 (627)
T KOG4238|consen 120 D--AGLVCITSFISPFAKDRENARKIHE-SAGLPFFEVFVDAPLNVCEQRDVKG 170 (627)
T ss_pred c--CCceeeehhcChhhhhhhhhhhhhc-ccCCceEEEEecCchhhhhhcChHH
Confidence 1 33445555443332 2223332 3345667899999999999986543
No 248
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.93 E-value=1.3e-05 Score=53.44 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
....+|++.|+-||||||+++.+++.+|.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34578999999999999999999999974
No 249
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=5.2e-05 Score=58.20 Aligned_cols=36 Identities=22% Similarity=0.484 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~ 55 (215)
+-.+|+|.|+.|||||-|+-.||.+|+..+|+.|.+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm 41 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM 41 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccce
Confidence 667999999999999999999999999999987554
No 250
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.92 E-value=4.2e-05 Score=57.48 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+...++|.|+||||||++|..++-.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5788999999999999999876543
No 251
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00014 Score=59.56 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
+..+++.||+|+||||+|+.|++.+++.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4578999999999999999999999863
No 252
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.91 E-value=1.2e-05 Score=62.57 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
.-|+|.|+||+||||+++.||+.+++.++.
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 459999999999999999999999976653
No 253
>PF13245 AAA_19: Part of AAA domain
Probab=97.90 E-value=1.7e-05 Score=48.39 Aligned_cols=25 Identities=40% Similarity=0.608 Sum_probs=18.4
Q ss_pred CeEEEEEcCCCCChH-HHHHHHHHHh
Q 028025 21 PTVVFVLGGPGSGKG-TQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKs-Tla~~La~~~ 45 (215)
..+.+|.|||||||| |+++.++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456788999999999 5555555544
No 254
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.90 E-value=7.4e-06 Score=54.62 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025 24 VFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 24 I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
++|.|+||+||||+++.||+.++..+.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 689999999999999999999986554
No 255
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.89 E-value=1.8e-05 Score=54.23 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
....++|.|+||+||||+++.+++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999987
No 256
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.89 E-value=1.7e-05 Score=65.88 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
...+.+++|||||||||..+.||+.+|+.+.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 3568899999999999999999999997655
No 257
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.89 E-value=1e-05 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=20.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 028025 24 VFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 24 I~i~G~~gsGKsTla~~La~~~~ 46 (215)
|+|.|+||+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999988774
No 258
>PRK04328 hypothetical protein; Provisional
Probab=97.88 E-value=5.1e-05 Score=57.46 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+...++|.|+||||||+++..++..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5788999999999999999986554
No 259
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=5.2e-05 Score=58.97 Aligned_cols=47 Identities=23% Similarity=0.421 Sum_probs=37.2
Q ss_pred ccccccc--ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025 6 ETPVKEA--DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (215)
Q Consensus 6 ~~p~~~~--~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~ 52 (215)
+.|-+.. +..+--..|+=|++.||||.|||-+|+++|.+-++.++..
T Consensus 168 ELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 168 ELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred cccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEe
Confidence 4455522 4555556788899999999999999999999999888764
No 260
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.88 E-value=1.6e-05 Score=62.30 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+++.+|.|+|+|||||||++..|...+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999987777
No 261
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.88 E-value=1.1e-05 Score=64.47 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
..=|+|.|+||+||||+|++||+-|.
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHHH
Confidence 44589999999999999999999884
No 262
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.88 E-value=1.3e-05 Score=60.74 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=25.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+++.+|.|+|+||+||||+...|...|
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 3578899999999999999999999988
No 263
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.85 E-value=1.4e-05 Score=59.19 Aligned_cols=31 Identities=32% Similarity=0.365 Sum_probs=26.2
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-++.|.||+||||||+.+.+|--.
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455678899999999999999999997644
No 264
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.85 E-value=1.8e-05 Score=60.42 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
.-|+|.|+||+|||++|+.|++.+|..++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 35778999999999999999999986555
No 265
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.84 E-value=6.2e-05 Score=56.46 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSA 52 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~ 52 (215)
++.++.|.|+|||||||++..++... | ..+++.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 57899999999999999999986543 2 455554
No 266
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.83 E-value=2.8e-05 Score=51.70 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=28.1
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+-.+.||.++.+.|+||+|||.+++.||+.+
T Consensus 47 ~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 47 NPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3467899999999999999999999999995
No 267
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.83 E-value=9.1e-05 Score=57.17 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.-++|.|+||+||||+|+.+++.+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 359999999999999998888776
No 268
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.83 E-value=2.2e-05 Score=63.33 Aligned_cols=38 Identities=24% Similarity=0.449 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeE--eeHHHHH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLL 56 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~--i~~~~~~ 56 (215)
..|.-|++.||||+|||++|+++++.++..+ ++..++.
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 4567799999999999999999999998544 4444443
No 269
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.82 E-value=1.6e-05 Score=58.58 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=25.4
Q ss_pred cccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
-++.-.+.-+++|.||+|||||||...++--
T Consensus 24 v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 24 VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3445567889999999999999999998643
No 270
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.81 E-value=2.3e-05 Score=57.22 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
|+.|.|.|++||||||+++.+.+.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 57899999999999999999988763
No 271
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.81 E-value=1.8e-05 Score=54.08 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.|++.|++|||||||+++|....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 469999999999999999996543
No 272
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.81 E-value=2e-05 Score=51.18 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La 42 (215)
....+++|.|++||||||+++.+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 446789999999999999999987
No 273
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=2.8e-05 Score=62.15 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=26.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (215)
Q Consensus 24 I~i~G~~gsGKsTla~~La~~~~~~~i~~ 52 (215)
.++.||||+||||+..++|+.++|.+.+.
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 78999999999999999999999987754
No 274
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.80 E-value=2.6e-05 Score=45.18 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+.+|+|++||||||+..++.=-+
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999885433
No 275
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.80 E-value=2.5e-05 Score=61.33 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
...|+|.|+||||||||++.|++.++..++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 4589999999999999999999999987653
No 276
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.80 E-value=2.1e-05 Score=57.40 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
+|+|+||+||||||++..|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999888774
No 277
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.80 E-value=1.2e-05 Score=63.19 Aligned_cols=39 Identities=36% Similarity=0.691 Sum_probs=31.8
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeE--eeHHHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLL 56 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~--i~~~~~~ 56 (215)
-..|..+.|.||||+|||.+|+++++.+|..+ ++.++++
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~ 185 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE 185 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh
Confidence 35688899999999999999999999998654 4455554
No 278
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.80 E-value=2e-05 Score=56.80 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=23.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh-----CCeEeeH
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA 52 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~ 52 (215)
.++|.|+||+|||+++..++... ...+++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 37899999999999999876654 2456664
No 279
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.79 E-value=0.00014 Score=60.70 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~ 52 (215)
..|.-+++.||||+|||++++.++...+..++..
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 3456699999999999999999999998665543
No 280
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.79 E-value=1.5e-05 Score=59.75 Aligned_cols=21 Identities=43% Similarity=0.734 Sum_probs=18.9
Q ss_pred EEcCCCCChHHHHHHHHHHhC
Q 028025 26 VLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 26 i~G~~gsGKsTla~~La~~~~ 46 (215)
|.||+||||||+++.+++.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999884
No 281
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.78 E-value=2.1e-05 Score=63.52 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~ 52 (215)
.-|+|.||||+|||++|+.|++.++..++..
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i 139 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIA 139 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence 4589999999999999999999998766654
No 282
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.78 E-value=3.4e-05 Score=60.22 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
..+..++|.||||+|||++|+.+++.++..
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345568999999999999999999999753
No 283
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.78 E-value=3.1e-05 Score=62.37 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
..|.-|+|.||||+|||++++.++..++..++.
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 456779999999999999999999999865554
No 284
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.77 E-value=2.5e-05 Score=56.15 Aligned_cols=30 Identities=20% Similarity=0.436 Sum_probs=20.3
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
....+..++|.|++|+||||+++.+.+.+.
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445678999999999999999999888774
No 285
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.77 E-value=0.00018 Score=56.16 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=45.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (215)
+..++.|.|+|||||||||..++... ...+++............-.. .....+- .+....+.....+...+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGv--d~~~l~v-~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGV--DIDNLLV-SQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCC--CHHHeEE-ecCCCHHHHHHHHHHHhh
Confidence 56789999999999999998876655 245676544333221111101 0111111 111123333445555444
Q ss_pred ccCCCeEEEeC
Q 028025 95 ESGNDKFLIDG 105 (215)
Q Consensus 95 ~~~~~~~iidg 105 (215)
......+|+|.
T Consensus 131 ~~~~~lIVIDS 141 (321)
T TIGR02012 131 SGAVDIIVVDS 141 (321)
T ss_pred ccCCcEEEEcc
Confidence 44477889996
No 286
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=97.77 E-value=0.00014 Score=57.53 Aligned_cols=112 Identities=19% Similarity=0.206 Sum_probs=67.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-ND 99 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 99 (215)
..++++.|++|||||++...|.+. +..+++..+..+.. ++.++... . ..-.+..+...+...+.... ..
T Consensus 141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~----~--~qpsQ~~Fe~~l~~~l~~~~~~~ 210 (345)
T PRK11784 141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLG----G--PQPSQKDFENLLAEALLKLDPAR 210 (345)
T ss_pred CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCC----C--CCcchHHHHHHHHHHHHcCCCCC
Confidence 445789999999999999999654 77788775544432 33333111 0 11123444666666666554 57
Q ss_pred eEEEeCCCCCH---HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025 100 KFLIDGFPRNE---ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 100 ~~iidg~~~~~---~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
.+++++--..+ .....+.. . +.-...|++++|.+...+|+.+.
T Consensus 211 ~i~vE~Es~~IG~~~lP~~l~~-~-m~~~~~v~i~~~~e~Rv~~l~~~ 256 (345)
T PRK11784 211 PIVVEDESRRIGRVHLPEALYE-A-MQQAPIVVVEAPLEERVERLLED 256 (345)
T ss_pred eEEEEeccccccCccCCHHHHH-H-HhhCCEEEEECCHHHHHHHHHHH
Confidence 78888522111 11111111 1 11123789999999999999876
No 287
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.77 E-value=3.2e-05 Score=61.91 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
..|.-++|.||||+|||++|+.+++.++..++.
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~ 186 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR 186 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEe
Confidence 346679999999999999999999999865554
No 288
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.77 E-value=0.0019 Score=52.51 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-----C--CeEeeHHHHHHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLRAE 59 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~-----~--~~~i~~~~~~~~~ 59 (215)
...++|.|++|+|||+|++++++.+ + ..+++..++....
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~ 181 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDF 181 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHH
Confidence 3458999999999999999998876 2 4577777766554
No 289
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.76 E-value=2.3e-05 Score=61.70 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
+...-.++-||||+||||+|+.++...+..+..
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~ 78 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEA 78 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEE
Confidence 345567899999999999999999999865544
No 290
>PRK12377 putative replication protein; Provisional
Probab=97.76 E-value=0.0016 Score=49.22 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAE 59 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~ 59 (215)
..-++|.|+||+|||.||.++++.+. ..+++..+++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 35689999999999999999999882 3456666665543
No 291
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.0015 Score=55.53 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
+..++|+|++|+||||+++.|++.+++
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 567899999999999999999999987
No 292
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.0015 Score=54.79 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
+..+++.||+|+||||+|+.|++.+++
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456899999999999999999999875
No 293
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=3.2e-05 Score=65.12 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
.+.+++++.||||+|||+|++.+|+.+|-.++.
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR 380 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR 380 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence 467899999999999999999999999855443
No 294
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.75 E-value=0.00024 Score=55.50 Aligned_cols=81 Identities=17% Similarity=0.284 Sum_probs=46.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHHHHHHHc--CCCcHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKS--GSENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (215)
+..++.|.|||||||||||..++... + ..+++...-+...... +... ...+- .+....+....++...
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~----~~l~v-~~p~~~eq~l~i~~~l 128 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDL----DNLLI-SQPDTGEQALEIADSL 128 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCH----HHhee-cCCCCHHHHHHHHHHH
Confidence 57789999999999999999987554 2 5666654333222111 1111 11111 1112233345555555
Q ss_pred HHccCCCeEEEeC
Q 028025 93 MEESGNDKFLIDG 105 (215)
Q Consensus 93 ~~~~~~~~~iidg 105 (215)
+.......+|+|.
T Consensus 129 i~s~~~~lIVIDS 141 (325)
T cd00983 129 VRSGAVDLIVVDS 141 (325)
T ss_pred HhccCCCEEEEcc
Confidence 5444477889996
No 295
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.75 E-value=3.6e-05 Score=56.74 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~ 54 (215)
.|..++|.|+||+||||+|+.|+. ...+++.|.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~ 43 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM 43 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence 357799999999999999999963 345566644
No 296
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.74 E-value=3.7e-05 Score=60.64 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeE
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~ 49 (215)
.+..++|.||||+||||+|+.+++.++..+
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 345689999999999999999999998643
No 297
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.74 E-value=3.4e-05 Score=53.00 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++|.|+|+.+|||||+++.|.+++
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998888
No 298
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00011 Score=62.92 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=69.3
Q ss_pred cccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH--HHHHHHHHHcC-CCcHHHHHH---------------HH-
Q 028025 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA--GDLLRAEIKSG-SENGTMIQN---------------MI- 74 (215)
Q Consensus 14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~--~~~~~~~~~~~-~~~~~~~~~---------------~~- 74 (215)
..+-..-|.=++|+||||+|||-||+++|-+-|.++++. .+++.-....+ +...+.+.. .+
T Consensus 337 ~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~ 416 (774)
T KOG0731|consen 337 QELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVG 416 (774)
T ss_pred HHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEeccccccc
Confidence 344344577899999999999999999999999877774 33333221111 111111111 00
Q ss_pred -Hc-C--CCCCHHHHHHHHHHHHHccC----CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhh
Q 028025 75 -KE-G--KIVPSEVTIKLLQKAMEESG----NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (215)
Q Consensus 75 -~~-~--~~~~~~~~~~~~~~~~~~~~----~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~ 143 (215)
.. | ....+....+-+.+.+.+.+ ...||+.+.....+.++.-.- +...+|..|+++.|...-...+-+
T Consensus 417 ~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~all-rpGRfdr~i~i~~p~~~~r~~i~~ 492 (774)
T KOG0731|consen 417 RKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALL-RPGRFDRQIQIDLPDVKGRASILK 492 (774)
T ss_pred ccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhc-CCCccccceeccCCchhhhHHHHH
Confidence 01 1 11222222333444443332 445666653222222222221 566788899999988776666654
No 299
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.74 E-value=5e-05 Score=63.00 Aligned_cols=86 Identities=14% Similarity=0.268 Sum_probs=48.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCC---------CCHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI---------VPSEVT 85 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 85 (215)
+..+++|.|+||+||||++..++... | ..+++.++-..+........+..+..+...+.. ...+..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~ 341 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH 341 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence 57799999999999999999988766 2 456664333222222212222222333333211 111233
Q ss_pred HHHHHHHHHccCCCeEEEeC
Q 028025 86 IKLLQKAMEESGNDKFLIDG 105 (215)
Q Consensus 86 ~~~~~~~~~~~~~~~~iidg 105 (215)
...+...+.....+.+++|.
T Consensus 342 ~~~i~~~i~~~~~~~vvIDs 361 (484)
T TIGR02655 342 LQIIKSEIADFKPARIAIDS 361 (484)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 44445555554567788886
No 300
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.74 E-value=3.7e-05 Score=54.83 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=25.9
Q ss_pred CC-eEEEEEcCCCCChHHHHHHHHHHh----CCeEeeH
Q 028025 20 KP-TVVFVLGGPGSGKGTQCANIVEHF----GYTHLSA 52 (215)
Q Consensus 20 ~~-~~I~i~G~~gsGKsTla~~La~~~----~~~~i~~ 52 (215)
++ .+|.+.||||||||||..++.+.+ ...++..
T Consensus 11 ~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 11 RPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred CceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 44 789999999999999988877766 4555544
No 301
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.73 E-value=3e-05 Score=62.49 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
..|+|.||||+|||++|+.|++.++..+..
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~ 146 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAI 146 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEE
Confidence 479999999999999999999999865553
No 302
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.0017 Score=53.77 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
+.-++++||+|+||||+|+.+|+.+++
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcC
Confidence 457999999999999999999998875
No 303
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.72 E-value=4.2e-05 Score=59.82 Aligned_cols=28 Identities=36% Similarity=0.619 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..++.+|++.||+||||||++..|+..+
T Consensus 111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 111 EKKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3568899999999999999999999887
No 304
>PRK04195 replication factor C large subunit; Provisional
Probab=97.72 E-value=3.5e-05 Score=63.94 Aligned_cols=31 Identities=19% Similarity=0.563 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
+..++|.||||+||||+|+.|++.+++.++.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ie 69 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIE 69 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 6789999999999999999999999876654
No 305
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.0011 Score=58.08 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
+..++|+|++|+||||+|+.|++.+++.
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 5678999999999999999999999864
No 306
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.71 E-value=3e-05 Score=58.29 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=26.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
+.-.+..++.|.||.|||||||.+.|+.-+.
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3445688999999999999999999988663
No 307
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.71 E-value=6e-05 Score=56.10 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=30.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL 56 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~ 56 (215)
...+..++|.|++|+|||++++.+++... +.++++.++.
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 44567899999999999999999998763 4566665543
No 308
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.71 E-value=4.8e-05 Score=58.22 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..++.+|+++|++|+||||++..||..+
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3567899999999999999999999877
No 309
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.00091 Score=53.24 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..++.+|+|.||+||||||++..|+..+
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999999766
No 310
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.70 E-value=5e-05 Score=61.77 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=27.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
..|.-++|.||||+|||++|++++..++..++.
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence 456679999999999999999999999765443
No 311
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.70 E-value=0.00019 Score=54.65 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA 52 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~ 52 (215)
+..++.|.|+||+||||+|..++-+. ...+++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 57789999999999999999986654 2455664
No 312
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.70 E-value=4.1e-05 Score=54.61 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=25.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHH
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG 53 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~ 53 (215)
++++.|+|||||||++..++..+ + ..+++.|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 68999999999999999998876 3 3455554
No 313
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.0019 Score=52.33 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
+..+++.||+|+||||+|+.+|+.+.+.
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5568999999999999999999999763
No 314
>PRK10646 ADP-binding protein; Provisional
Probab=97.68 E-value=5.8e-05 Score=52.28 Aligned_cols=27 Identities=30% Similarity=0.580 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
+.+|++.|.-||||||+++.+++.+|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 568999999999999999999999985
No 315
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.68 E-value=5.5e-05 Score=51.75 Aligned_cols=29 Identities=34% Similarity=0.491 Sum_probs=26.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
..+.+|++.|.-||||||+++.+++.++.
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 46789999999999999999999999983
No 316
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00036 Score=53.25 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=32.2
Q ss_pred CCeE-EEEEcCCCCChHHHHHHHHHHhCCeEe--eHHHHHHHHH
Q 028025 20 KPTV-VFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEI 60 (215)
Q Consensus 20 ~~~~-I~i~G~~gsGKsTla~~La~~~~~~~i--~~~~~~~~~~ 60 (215)
+|+. |++.||||.|||.||+++|-.-|-.++ +..|++..++
T Consensus 164 ~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 164 KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 3554 999999999999999999999885444 4567776653
No 317
>PRK13695 putative NTPase; Provisional
Probab=97.68 E-value=4.5e-05 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
|.|+|+|++||||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999987765
No 318
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.68 E-value=4.5e-05 Score=56.07 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=26.8
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
+....+++|.+.|++||||||+.+.+.+.++
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4455789999999999999999999988754
No 319
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=4.2e-05 Score=64.44 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC--eEeeHHHHH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLL 56 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~--~~i~~~~~~ 56 (215)
.+++++++.||||+|||++++.+|..+|- .-++.|-+.
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~t 475 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMT 475 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccc
Confidence 46899999999999999999999999984 455555443
No 320
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0004 Score=57.00 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=35.7
Q ss_pred ccccccccccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 5 VETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 5 ~~~p~~~~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
..+|.+ +..+-..=|+=|+++||||.|||-||+++|-+-+.+++.
T Consensus 323 LkdP~k--ftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~ 367 (752)
T KOG0734|consen 323 LKDPTK--FTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFY 367 (752)
T ss_pred hcCcHH--hhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEe
Confidence 456777 444544447789999999999999999999998876665
No 321
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.67 E-value=0.0012 Score=54.17 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=31.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-------CCeEeeHHHHHHHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEI 60 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~-------~~~~i~~~~~~~~~~ 60 (215)
+.-++|.|++|+|||.|+++++..+ ...+++..+++....
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~ 176 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV 176 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 3459999999999999999999875 246778877766654
No 322
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.67 E-value=5.1e-05 Score=64.01 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=30.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
++..++.+++||||.||||||+.+|++-||.++.
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvE 356 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVE 356 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEE
Confidence 3456789999999999999999999999998886
No 323
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.67 E-value=4.4e-05 Score=54.32 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=27.1
Q ss_pred cccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
-++.-.+.-+++++||+||||||+.+.+....
T Consensus 21 vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 21 VSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred ceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 34556678899999999999999999987766
No 324
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.67 E-value=0.00015 Score=53.18 Aligned_cols=25 Identities=40% Similarity=0.747 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++--+|+|||||||||-+.-+++-+
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred CcceEEEcCCCCCccchhhhHHHHH
Confidence 4557899999999999999887766
No 325
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.67 E-value=0.0001 Score=55.04 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHHHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLL 56 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~~~~ 56 (215)
...++|.|++|+|||++++.++... ...+++..++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 4568999999999999999999887 56777765543
No 326
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.67 E-value=4.6e-05 Score=58.27 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
+..++|.|++||||||+++.+++.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999999875
No 327
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.66 E-value=3.9e-05 Score=56.60 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.3
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.-.++-++.|.|++||||||+++.|+--.
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 33567889999999999999999996544
No 328
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.66 E-value=5.2e-05 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.|+|.|++|||||||.+.|+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999997654
No 329
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00056 Score=57.11 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~ 52 (215)
..+..+++.||||+|||.+|++++...+..+++.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v 307 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISV 307 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence 4566899999999999999999999887766664
No 330
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.65 E-value=7e-05 Score=53.29 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
..+++.||+|+|||.+|+.|++.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999984
No 331
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.65 E-value=0.005 Score=50.89 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=82.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (215)
...+.+|++.|..||||....+.|.+.++ +.+.+.+ .+.. .+.....+.+...
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~----------~Pt~--------------~E~~~~~lwRf~~ 351 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIA----------APTD--------------EEKAQHYLWRFWR 351 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCC----------CcCH--------------HHHcCcHHHHHHH
Confidence 34688999999999999999999999985 4444321 1111 1111222222222
Q ss_pred ccC--CCeEEEeCCCCC-------------HHHHHHHHHh--------cCCCCcEEEEEecCHHHHHHHHhhc-cCC--C
Q 028025 95 ESG--NDKFLIDGFPRN-------------EENRAAFEAV--------TKIEPEFVLFFDCSEEEMERRILNR-NQG--R 148 (215)
Q Consensus 95 ~~~--~~~~iidg~~~~-------------~~~~~~~~~~--------~~~~~~~~i~L~~~~e~~~~R~~~r-~~~--~ 148 (215)
..+ |...|+|+.... .++...+.++ .....-+-+||.+|.++..+|+..| ..+ .
T Consensus 352 ~lP~~G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k~ 431 (493)
T TIGR03708 352 HIPRRGRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFKR 431 (493)
T ss_pred hCCCCCeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCccC
Confidence 222 788888853322 1222222221 2334446899999999999999998 222 1
Q ss_pred CCCcHHHHH--HHHHHHhhcchhHHHHHHh-cCcEEEEcCCC
Q 028025 149 EDDNVETIR--KRFKVFLESSLPVVQYYEA-KGKVRKIDAAK 187 (215)
Q Consensus 149 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~id~~~ 187 (215)
-...++++. +++..|......++..-.. ..+-++|+++.
T Consensus 432 WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~d 473 (493)
T TIGR03708 432 YKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEAND 473 (493)
T ss_pred CcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCC
Confidence 222334433 3444555554444332222 24788888863
No 332
>PHA02244 ATPase-like protein
Probab=97.65 E-value=5.9e-05 Score=59.52 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~ 54 (215)
..-|+|.||||+|||++|+.++..++..++....
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 3447889999999999999999999987776543
No 333
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.64 E-value=5.9e-05 Score=54.69 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=23.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
-.+..+-.++||+||||||+.+.| ++++
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR~l-NRmn 57 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLRCL-NRMN 57 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHHHH-Hhhc
Confidence 346778999999999999999998 6664
No 334
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=5e-05 Score=55.59 Aligned_cols=37 Identities=35% Similarity=0.444 Sum_probs=30.0
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
++.-...-+.+|.||.|||||||+..|+-+-+|.+..
T Consensus 24 nL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~ 60 (251)
T COG0396 24 NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTE 60 (251)
T ss_pred ceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEec
Confidence 4445567889999999999999999998887765443
No 335
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.64 E-value=0.00018 Score=59.81 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
+...++|.|+|||||||+|..++-
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~ 43 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLY 43 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 578899999999999999999743
No 336
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.0011 Score=56.31 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
+..++++||+|+||||+|+.||+.+++.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6688999999999999999999999863
No 337
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.0028 Score=53.59 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
+..+++.||+|+||||+|+.+|+.+.+
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 567999999999999999999999964
No 338
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.0028 Score=53.94 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
-+..++++|++|+||||+|+.|++.+++
T Consensus 37 l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 37 LHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3567899999999999999999999986
No 339
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.63 E-value=2.8e-05 Score=53.10 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+..+++|.|++|||||||.+.|+...
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 456789999999999999999997765
No 340
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.63 E-value=5.7e-05 Score=60.53 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
.+|.+|+|+|++|||||||+..|...+.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3678999999999999999999998885
No 341
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.63 E-value=4.3e-05 Score=59.72 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=25.2
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-...-+++|.||+||||||+.+.+|--.
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444567789999999999999999997544
No 342
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.63 E-value=6.4e-05 Score=57.93 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.++.+|+|.||+||||||++..|+..+
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357799999999999999999998876
No 343
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.62 E-value=6e-05 Score=53.47 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
+++|.|++|||||++|..++...+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~ 24 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELG 24 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999988755
No 344
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.62 E-value=7e-05 Score=60.96 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=27.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
...+..++|.||||+||||+|+.+++..+..++.
T Consensus 33 ~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~ 66 (413)
T PRK13342 33 AGRLSSMILWGPPGTGKTTLARIIAGATDAPFEA 66 (413)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3455578889999999999999999998755443
No 345
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.62 E-value=0.0014 Score=48.61 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-------CCeEeeHHHHHHHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEI 60 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~-------~~~~i~~~~~~~~~~ 60 (215)
...++|.|++|+|||.|.++++..+ ...+++..++.....
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~ 80 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFA 80 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHH
Confidence 3457999999999999999998775 256888878776654
No 346
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.62 E-value=0.00019 Score=53.72 Aligned_cols=26 Identities=15% Similarity=0.371 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..++.|.|+||+||||+|..++..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35589999999999999986654433
No 347
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=97.62 E-value=0.0047 Score=46.98 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=19.1
Q ss_pred CcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025 124 PEFVLFFDCSEEEMERRILNRNQGREDDN 152 (215)
Q Consensus 124 ~~~~i~L~~~~e~~~~R~~~r~~~~~~~~ 152 (215)
-+-+|.++.+.++..+|+.+| +|+++.
T Consensus 146 G~niVl~~L~~~E~~rRl~~R--~R~gE~ 172 (281)
T PF00693_consen 146 GTNIVLMTLPEEEHLRRLKAR--GRPGER 172 (281)
T ss_dssp TEEEEEEE--HHHHHHHHHHT--STTT-S
T ss_pred CCEEEEEeCCHHHHHHHHHHc--CCCccc
Confidence 344788899999999999999 666554
No 348
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.62 E-value=5.9e-05 Score=54.52 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
.....++|.|++||||||+.+.|...+.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3567899999999999999999987663
No 349
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.62 E-value=4.8e-05 Score=54.36 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=23.8
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHH
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIV 42 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La 42 (215)
++.-....+++|.||+|||||||.+.+.
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3445677899999999999999999884
No 350
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=97.62 E-value=0.0012 Score=53.02 Aligned_cols=155 Identities=14% Similarity=0.251 Sum_probs=87.5
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC-----eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHH---H
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI---K 87 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 87 (215)
.-++.+.+|++.|.|++|||.++..|.+.++| ..++.+.+-+........ ...+.-...++..+..+... .
T Consensus 23 ~~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s-~~ff~p~n~~~~~lr~~~a~~~l~ 101 (438)
T KOG0234|consen 23 LFMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDS-EPFFLPDNAEASKLRKQLALLALN 101 (438)
T ss_pred cccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhccccc-ccccccCChhhhhhhHHHHHHHhh
Confidence 44667889999999999999999999999875 445556544444322111 11110001111222222222 2
Q ss_pred HHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcE-EEEE--ecCHHHHHHHHhh-c-------cCCCCCCcHHHH
Q 028025 88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF-VLFF--DCSEEEMERRILN-R-------NQGREDDNVETI 156 (215)
Q Consensus 88 ~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~-~i~L--~~~~e~~~~R~~~-r-------~~~~~~~~~~~~ 156 (215)
-+..-+...++++.|.|+.+.+...++.+..+....+.. ++|+ -|++..++.+... + ..-..+...+++
T Consensus 102 D~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~~~e~a~~df 181 (438)
T KOG0234|consen 102 DLLHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGKDQEEALKDF 181 (438)
T ss_pred hHHHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCCCHHHHHHHH
Confidence 222333344599999999888887777666532112222 3333 3455555555443 4 111223346677
Q ss_pred HHHHHHHhhcchhHH
Q 028025 157 RKRFKVFLESSLPVV 171 (215)
Q Consensus 157 ~~~~~~~~~~~~~~~ 171 (215)
.+|+..|.....|+.
T Consensus 182 l~ri~~ye~~YePld 196 (438)
T KOG0234|consen 182 LKRIRNYEKYYEPLD 196 (438)
T ss_pred HHHHHhhhhccCcCC
Confidence 888888888877775
No 351
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.62 E-value=5.6e-05 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+|.|.|++||||||++..|.+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
No 352
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.62 E-value=5e-05 Score=55.05 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=25.0
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-....+++|.|++|||||||++.|+-.+
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567799999999999999999997544
No 353
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.0033 Score=52.57 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
+..+++.||+|+||||+|+.|++.+++.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5678999999999999999999999763
No 354
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.61 E-value=0.0092 Score=49.10 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHHHHHHHH
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAE 59 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~~~~~~~ 59 (215)
.-++|.|++|+|||+|+++++..+ ...+++.+++....
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~ 184 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL 184 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH
Confidence 347899999999999999999876 24667776655443
No 355
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.61 E-value=0.0038 Score=47.81 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=51.5
Q ss_pred ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc-CCCcHHHHHHHHHcCCCCCHHHHHHHHHH
Q 028025 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQK 91 (215)
Q Consensus 13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (215)
+.+-.+.||.++.+.|.+|+||+-+++.+|+++--..... +++...... .-+....+..+-. .....+..
T Consensus 102 ~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S-~~V~~fvat~hFP~~~~ie~Yk~--------eL~~~v~~ 172 (344)
T KOG2170|consen 102 WANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS-PFVHHFVATLHFPHASKIEDYKE--------ELKNRVRG 172 (344)
T ss_pred hcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc-hhHHHhhhhccCCChHHHHHHHH--------HHHHHHHH
Confidence 3445578999999999999999999999999884333333 344443333 2222222222211 12344445
Q ss_pred HHHccCCCeEEEeC
Q 028025 92 AMEESGNDKFLIDG 105 (215)
Q Consensus 92 ~~~~~~~~~~iidg 105 (215)
.+.......+|+|-
T Consensus 173 ~v~~C~rslFIFDE 186 (344)
T KOG2170|consen 173 TVQACQRSLFIFDE 186 (344)
T ss_pred HHHhcCCceEEech
Confidence 55555577888885
No 356
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.60 E-value=7.6e-05 Score=61.08 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
+..+.+|+||+||||||..+.|++.+|+.++
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 4568899999999999999999999998766
No 357
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.60 E-value=5.5e-05 Score=52.99 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+++|.|+||+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998877
No 358
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0028 Score=54.79 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
+..++|+|++|+||||+++.|++.+++.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 5678899999999999999999999863
No 359
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.59 E-value=5.3e-05 Score=56.13 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=25.6
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-....++.|.|++|||||||++.|+-.+
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 444567899999999999999999998655
No 360
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.59 E-value=6.3e-05 Score=57.60 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=25.6
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+...+..+|.|.|+||||||||+..+.+.+
T Consensus 99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 99 FAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334568899999999999999999888876
No 361
>PRK09354 recA recombinase A; Provisional
Probab=97.59 E-value=0.00046 Score=54.43 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=46.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHHHHHHHHHHc--CCCcHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKS--GSENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (215)
+..++.|.|++||||||||..++... ...+++...-+...... +.. +...+.. +....+....++...
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvd----ld~lli~-qp~~~Eq~l~i~~~l 133 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVD----IDNLLVS-QPDTGEQALEIADTL 133 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCC----HHHeEEe-cCCCHHHHHHHHHHH
Confidence 57789999999999999999987554 25666654433322111 111 1111111 122233344555555
Q ss_pred HHccCCCeEEEeC
Q 028025 93 MEESGNDKFLIDG 105 (215)
Q Consensus 93 ~~~~~~~~~iidg 105 (215)
+.......+|+|.
T Consensus 134 i~s~~~~lIVIDS 146 (349)
T PRK09354 134 VRSGAVDLIVVDS 146 (349)
T ss_pred hhcCCCCEEEEeC
Confidence 5444477899997
No 362
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.59 E-value=5.5e-05 Score=55.98 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=25.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-...-+++|.|++|||||||++.|+-.+
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 24 FHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344567899999999999999999998755
No 363
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.58 E-value=8.6e-05 Score=52.11 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
.+|.|+|++||||||++..|...+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999873
No 364
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.58 E-value=8.9e-05 Score=57.72 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.+.+|.|.|+|||||||++..|+..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999988876
No 365
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.58 E-value=5.7e-05 Score=55.80 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=25.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++|||||||++.|+-.+
T Consensus 22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444567789999999999999999998754
No 366
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.57 E-value=0.00011 Score=55.06 Aligned_cols=34 Identities=6% Similarity=0.183 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGD 54 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~ 54 (215)
...++|.||+|+|||++++.++.... ..+++.++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 35789999999999999999998764 35666644
No 367
>PRK13768 GTPase; Provisional
Probab=97.57 E-value=8.1e-05 Score=56.48 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+++|++.|++||||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 5789999999999999999988777
No 368
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.57 E-value=6e-05 Score=55.56 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=25.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-....++.|.|++|||||||++.|+-.+
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344567899999999999999999998654
No 369
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0022 Score=54.72 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
+..++|+|++|+||||+|+.|++.+++.
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4568999999999999999999999863
No 370
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00016 Score=62.87 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=27.2
Q ss_pred CCCe-EEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 19 KKPT-VVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 19 ~~~~-~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
.+|. .+++.||||+|||++|+.||+.++..++.
T Consensus 485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~ 518 (758)
T PRK11034 485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR 518 (758)
T ss_pred CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEE
Confidence 3443 58999999999999999999999765543
No 371
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.57 E-value=7e-05 Score=62.29 Aligned_cols=28 Identities=21% Similarity=0.488 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
.+..++++.||||+|||||++.|++.+.
T Consensus 101 ~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 101 EKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 3557999999999999999999999774
No 372
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=6.2e-05 Score=55.45 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=25.9
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-..+-++.|.|++|||||||++.|+-.+
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444577899999999999999999998654
No 373
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.57 E-value=6.4e-05 Score=59.11 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=25.2
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-++.+.||+||||||+.+.+|--.
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444567789999999999999999997533
No 374
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.0017 Score=54.85 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=30.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh-------CCeEeeHHHHHHHHH
Q 028025 23 VVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEI 60 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~-------~~~~i~~~~~~~~~~ 60 (215)
.++|.|++|+|||.|+++++... ...+++..+++....
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~ 360 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI 360 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence 48999999999999999999876 246788877766554
No 375
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.56 E-value=6e-05 Score=55.30 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=25.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-....++.|.|++|||||||.+.|+-.+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444567899999999999999999997754
No 376
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.56 E-value=6.6e-05 Score=55.44 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=25.7
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-....+++|.|++|||||||++.|+-.+
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444567899999999999999999998654
No 377
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.56 E-value=6.4e-05 Score=55.85 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=25.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++|||||||++.|+-.+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 444578899999999999999999997654
No 378
>PRK06893 DNA replication initiation factor; Validated
Probab=97.56 E-value=0.00013 Score=54.57 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAG 53 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~ 53 (215)
.+.++|.|+||+|||+++++++..+ +..+++..
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 4568999999999999999999876 45566553
No 379
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.56 E-value=0.00043 Score=55.13 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLR 57 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~~~ 57 (215)
++.+|.+.||.|+||||..-+||-++. ..+|.. |-||
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITt-DtYR 245 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITT-DTYR 245 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEe-ccch
Confidence 478999999999999999999998885 456666 3344
No 380
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=8.4e-05 Score=61.22 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
+..+++.||||+||||+|+.+++.++.
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456899999999999999999999875
No 381
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.55 E-value=6.8e-05 Score=55.39 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=25.2
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-...-++.|.|++||||||+++.|+-.+
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999997654
No 382
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.55 E-value=0.0022 Score=47.40 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.-+-++|.||||.||||-+..||..+
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHH
Confidence 44558999999999999999999887
No 383
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.55 E-value=6.9e-05 Score=55.62 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=25.3
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-...-++.|.|++|||||||++.|+-.+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567799999999999999999998654
No 384
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=9.2e-05 Score=59.22 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
+..+++.||+|+||||+|+.+++.+++
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 567899999999999999999999974
No 385
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.54 E-value=7.8e-05 Score=51.44 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
..-|+|.|++|+||||+|..|.++ ++.++
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lv 42 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLV 42 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEE
Confidence 467999999999999999999775 55544
No 386
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.54 E-value=7.4e-05 Score=55.15 Aligned_cols=31 Identities=42% Similarity=0.429 Sum_probs=25.8
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+..+++|.|++||||||+.+.|+-.+
T Consensus 20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444577899999999999999999998654
No 387
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.54 E-value=7e-05 Score=55.61 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=26.0
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.++.++.|.|++|||||||.+.|+-.+
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444577899999999999999999998654
No 388
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.54 E-value=0.00022 Score=62.24 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=27.0
Q ss_pred CCCe-EEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 19 KKPT-VVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 19 ~~~~-~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
.+|. .+++.||+|+|||++|+.|++.++..++.
T Consensus 481 ~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~ 514 (731)
T TIGR02639 481 NKPVGSFLFTGPTGVGKTELAKQLAEALGVHLER 514 (731)
T ss_pred CCCceeEEEECCCCccHHHHHHHHHHHhcCCeEE
Confidence 3454 57999999999999999999999764443
No 389
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=6.8e-05 Score=56.24 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=25.6
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-...-+++|.|++|||||||++.|+-.+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444577899999999999999999998655
No 390
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.54 E-value=7.2e-05 Score=56.40 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=25.7
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-...-+++|.|++|||||||++.|+-.+
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 22 NLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3444567899999999999999999998654
No 391
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.54 E-value=6.8e-05 Score=56.28 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=25.3
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++|||||||++.|+-.+
T Consensus 21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 21 FSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 444567899999999999999999997654
No 392
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=7e-05 Score=56.12 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=25.9
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-+++|.|++|||||||++.|+-.+
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444567899999999999999999998654
No 393
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=9.4e-05 Score=56.75 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG 53 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~ 53 (215)
..-|++.||+|||||-||+.||+.++.++.-+|
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD 129 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIAD 129 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeecc
Confidence 346999999999999999999999987665543
No 394
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=7.6e-05 Score=53.53 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=25.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-++.|.|++|||||||++.|+..+
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999997544
No 395
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.53 E-value=7.5e-05 Score=55.17 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=25.2
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+..+++|.|++||||||+.+.|+...
T Consensus 8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 8 FVMGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 344567899999999999999999998654
No 396
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=6.6e-05 Score=55.34 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+. +++|.|++||||||+++.|+-.+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 45 89999999999999999997644
No 397
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=7.5e-05 Score=56.22 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=25.9
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-+++|.|++|||||||++.|+-.+
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 21 SLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3444577899999999999999999998654
No 398
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.53 E-value=8.4e-05 Score=58.37 Aligned_cols=35 Identities=23% Similarity=0.608 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC----CeEeeHHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDL 55 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~----~~~i~~~~~ 55 (215)
...|+|.||||+|||.+|..+|+.+| |..++..++
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 67899999999999999999999997 445554444
No 399
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.53 E-value=7.5e-05 Score=55.13 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=25.3
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+..++.|.|++|||||||++.|+-.+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 21 LDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334567889999999999999999998765
No 400
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.53 E-value=7.8e-05 Score=61.67 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
.|.-|+|.||||+|||++++++++.++.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 4567999999999999999999999854
No 401
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.52 E-value=7.1e-05 Score=55.27 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=25.2
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-++.|.|++|||||||++.|+-.+
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 344567899999999999999999997654
No 402
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.52 E-value=8.5e-05 Score=56.09 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
.-=+++.||||-||||+|..+|+.+|.
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgv 78 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGV 78 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcC
Confidence 345899999999999999999999974
No 403
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=7.8e-05 Score=56.10 Aligned_cols=30 Identities=30% Similarity=0.308 Sum_probs=25.5
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.++-++.|.|++|||||||++.|+-.+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 23 LDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999998754
No 404
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.52 E-value=0.0011 Score=50.61 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=67.2
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHH
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK 91 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (215)
+...+.-+|.++||.||||||...++-+++| .+++...|-++....+. ..+.. ++.--.....+...++.
T Consensus 120 ~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~sk----kslI~--QREvG~dT~sF~~aLra 193 (353)
T COG2805 120 LAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESK----KSLIN--QREVGRDTLSFANALRA 193 (353)
T ss_pred HHhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcch----Hhhhh--HHHhcccHHHHHHHHHH
Confidence 3344556899999999999999999989987 45555544333321111 00000 00011112344677888
Q ss_pred HHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEE---ecCHHHHHHHHhhc
Q 028025 92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFF---DCSEEEMERRILNR 144 (215)
Q Consensus 92 ~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L---~~~~e~~~~R~~~r 144 (215)
++.+ .--+|+=|-.+..+....-..+ . ...+.|+= +.+.....+|+..-
T Consensus 194 ALRe--DPDVIlvGEmRD~ETi~~ALtA-A-ETGHLV~~TLHT~sA~~ti~Riidv 245 (353)
T COG2805 194 ALRE--DPDVILVGEMRDLETIRLALTA-A-ETGHLVFGTLHTNSAAKTIDRIIDV 245 (353)
T ss_pred Hhhc--CCCEEEEeccccHHHHHHHHHH-H-hcCCEEEEecccccHHHHHHHHHHh
Confidence 8776 4556666777777776654442 1 11223332 33566677888753
No 405
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.52 E-value=9.4e-05 Score=52.53 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|+|.|++||||||+.+.|...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC
Confidence 44678999999999999999999764
No 406
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=8.1e-05 Score=55.75 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=26.3
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-...-++.|.|++|||||||++.|+..+
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444577899999999999999999998765
No 407
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.0028 Score=55.77 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
+..++|.|++|+||||+++.|++.+++
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 456899999999999999999999986
No 408
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=7.3e-05 Score=55.51 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=25.2
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++|||||||++.|+-.+
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344567899999999999999999997654
No 409
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.51 E-value=0.00013 Score=53.73 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG 53 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~ 53 (215)
+..++.|.|+||||||+++..++... + ..+++.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56789999999999999999988655 2 4556553
No 410
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.51 E-value=9.5e-05 Score=52.88 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-....++.|.|++|||||||.+.|+-.+
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344567899999999999999999997654
No 411
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=8.4e-05 Score=53.03 Aligned_cols=30 Identities=33% Similarity=0.392 Sum_probs=25.0
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-...-+++|.|++|||||||.+.|+-.+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334567799999999999999999997654
No 412
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.51 E-value=7.9e-05 Score=54.68 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=25.3
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-++.|.|++|||||||.+.|+-.+
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 19 LTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 444567899999999999999999998654
No 413
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.51 E-value=0.00041 Score=51.64 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
...++.|.|+||||||+++..++..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH
Confidence 5779999999999999999998765
No 414
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.51 E-value=8.4e-05 Score=55.40 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=25.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++|||||||++.|+-..
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 444567799999999999999999997644
No 415
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.50 E-value=0.00035 Score=52.15 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+..+++|.|+||+||||++..++..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 5789999999999999999987643
No 416
>CHL00176 ftsH cell division protein; Validated
Probab=97.50 E-value=0.00011 Score=62.54 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
..|.-+++.||||+|||++|+.+|...+..++.
T Consensus 214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~ 246 (638)
T CHL00176 214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFS 246 (638)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 346679999999999999999999999866554
No 417
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.50 E-value=8.4e-05 Score=55.44 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=25.8
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-++.|.|++|||||||++.|+-.+
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444567899999999999999999998765
No 418
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.50 E-value=9.3e-05 Score=52.44 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=25.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-++.|.|++||||||+++.|+-.+
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444567899999999999999999997655
No 419
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0046 Score=52.75 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
+.-+++.||+|+||||+|+.|++.+++.
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5569999999999999999999999874
No 420
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=9.1e-05 Score=54.98 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=25.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-...-+++|.|++|||||||.+.|+-.+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334467899999999999999999998654
No 421
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0034 Score=53.16 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
-+..+++.||+|+||||+|+.|++.+++.
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 35678999999999999999999999863
No 422
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.50 E-value=9.5e-05 Score=51.76 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=26.7
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-...-++++.|++||||||+.+.|..++
T Consensus 31 slsV~aGECvvL~G~SG~GKStllr~LYaNY 61 (235)
T COG4778 31 SLSVNAGECVVLHGPSGSGKSTLLRSLYANY 61 (235)
T ss_pred eEEecCccEEEeeCCCCCcHHHHHHHHHhcc
Confidence 4455678899999999999999999998777
No 423
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.50 E-value=0.00013 Score=54.02 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..++.|.|+|||||||+|..++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999998776
No 424
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.49 E-value=8.8e-05 Score=55.71 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=25.5
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.++-+++|.|++|||||||++.|+-.+
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 444578899999999999999999998654
No 425
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.49 E-value=8.8e-05 Score=54.00 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=25.2
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.++-+++|.|++|||||||++.|+-..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 21 ITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 334567799999999999999999997754
No 426
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.49 E-value=0.00011 Score=58.06 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
++...++|.||||+||||+|+.+++.+.
T Consensus 34 ~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 34 PNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3434588999999999999999999873
No 427
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.49 E-value=8.9e-05 Score=55.29 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=26.1
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-+++|.|++|||||||.+.|+-.+
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444578899999999999999999998655
No 428
>PRK04296 thymidine kinase; Provisional
Probab=97.49 E-value=0.00012 Score=53.10 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+++++|++|+||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998887
No 429
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=8.1e-05 Score=54.07 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=24.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
+.-.+..++.|.|++||||||+++.|+-
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3345678999999999999999999985
No 430
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.49 E-value=9.3e-05 Score=55.78 Aligned_cols=30 Identities=40% Similarity=0.568 Sum_probs=25.5
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
++.-.+.-+++|.|++|||||||.+.|+-.
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 20 NLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred ceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344457789999999999999999999875
No 431
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.49 E-value=0.00095 Score=49.41 Aligned_cols=117 Identities=23% Similarity=0.383 Sum_probs=63.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CeE--------eeHHHHHHHHHHcCC--CcHHH---------HHH
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTH--------LSAGDLLRAEIKSGS--ENGTM---------IQN 72 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~----~~~--------i~~~~~~~~~~~~~~--~~~~~---------~~~ 72 (215)
+.-.+..+..|.|++||||||+.+.+.-.+. -.. ++.++.+.-....+. +.+.. ..-
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVaf 108 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF 108 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhe
Confidence 3445778999999999999999999866552 112 222222222111111 11111 111
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCH----HHHHHHHHhcCCCCcEEEEEecC
Q 028025 73 MIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNE----ENRAAFEAVTKIEPEFVLFFDCS 133 (215)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iidg~~~~~----~~~~~~~~~~~~~~~~~i~L~~~ 133 (215)
.+.+...++.....+++..++..-+-.+.+.|-||... ..+-.+.++....|++++ ++-|
T Consensus 109 plre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~-~DEP 172 (263)
T COG1127 109 PLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF-LDEP 172 (263)
T ss_pred ehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEE-ecCC
Confidence 22233446666777777777765544455577777553 233444443456777544 4543
No 432
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0034 Score=50.72 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
.+.-+++.||+|+||||+|+.+++.+.+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46789999999999999999999998653
No 433
>PHA02624 large T antigen; Provisional
Probab=97.48 E-value=0.00016 Score=60.37 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~ 52 (215)
+..+++|.||||+||||++..|.+.++..+++.
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 455999999999999999999999996555653
No 434
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.48 E-value=0.00011 Score=48.65 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHH
Q 028025 23 VVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~ 43 (215)
.|+|.|.+|||||||...|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999975
No 435
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.48 E-value=0.0001 Score=55.20 Aligned_cols=30 Identities=37% Similarity=0.439 Sum_probs=25.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++|||||||.+.|+-.+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999998654
No 436
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.48 E-value=9.4e-05 Score=53.03 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=25.9
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+..++.|.|++|||||||++.|+-..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3444567889999999999999999997754
No 437
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=9.9e-05 Score=55.62 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=25.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-++.|.|++|||||||++.|+-..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 23 LDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999998654
No 438
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.48 E-value=9.4e-05 Score=55.21 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=25.6
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.++-++.|.|++|||||||++.|+-.+
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 444577899999999999999999998654
No 439
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.48 E-value=9.6e-05 Score=55.23 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=26.2
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-++.|.|++|||||||++.|+-.+
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444578899999999999999999998655
No 440
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.47 E-value=0.00011 Score=53.67 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=23.2
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
.+.-....+++|+||+||||||+.+.++-
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHH
Confidence 33333457899999999999999999974
No 441
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00014 Score=57.81 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.++.+++|.||+|+||||++.+|+..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999764
No 442
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.47 E-value=9.7e-05 Score=55.66 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=25.3
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.++-+++|.|++|||||||++.|+-.+
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334467799999999999999999998765
No 443
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=9.7e-05 Score=56.17 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=25.5
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++|||||||++.|+-.+
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 22 LTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999998654
No 444
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.47 E-value=9.9e-05 Score=55.21 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=24.7
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.-.++-++.|.|++||||||+++.|+-.+
T Consensus 7 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 7 TIQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567799999999999999999998655
No 445
>PLN03025 replication factor C subunit; Provisional
Probab=97.47 E-value=0.00012 Score=57.54 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..-+++.||||+||||+|+.+++.+
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33347899999999999999999987
No 446
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.47 E-value=0.00011 Score=52.52 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=25.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-....++.|.|++|||||||.+.|+-.+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 444567799999999999999999998654
No 447
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.0047 Score=52.68 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
+..++|.|++|+||||+++.|++.+++
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 567899999999999999999999975
No 448
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=97.46 E-value=0.0052 Score=50.32 Aligned_cols=161 Identities=14% Similarity=0.257 Sum_probs=91.7
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC-----------------------CeEeeHHHHHHHHHHcCCCcHHHHHHH
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----------------------YTHLSAGDLLRAEIKSGSENGTMIQNM 73 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~-----------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~ 73 (215)
++-+...+++.|+.|+|-..+-+.|-.... |.+++... +...
T Consensus 336 ~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~---------------~e~d 400 (542)
T KOG0609|consen 336 PPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEE---------------MEAD 400 (542)
T ss_pred cccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHH---------------Hhhh
Confidence 335678899999999999999888866543 33333333 3333
Q ss_pred HHcCCCCCHH--------HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc
Q 028025 74 IKEGKIVPSE--------VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (215)
Q Consensus 74 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~ 145 (215)
+.++.++..- ...+.++..+.. |+.+++|-.|......+. .-..| ++||+.+|.-...++..+-.
T Consensus 401 I~~~~~lE~GEy~~nlYGTs~dsVr~v~~~--gKicvLdv~Pqalk~lRt----~Ef~P-yVIFI~pP~~~~~r~~r~~~ 473 (542)
T KOG0609|consen 401 IRAGKFLEYGEYEGNLYGTSLDSVRNVIAS--GKICVLDVEPQALKVLRT----AEFKP-YVIFIAPPSLEELRALRKVA 473 (542)
T ss_pred hhcCCceecCcchhccccchHHHHHHHHHh--CCEEEEecCHHHhhhhhh----hcccc-eEEEecCCCchhHHHHhhhc
Confidence 3333332211 125556666654 899999976644444333 44556 58888888766666554431
Q ss_pred -------CCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccccc
Q 028025 146 -------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKVK 208 (215)
Q Consensus 146 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~~~ 208 (215)
....++..+.+.+ ....+...|...-..+++|+ ++++.++++...+.....+.+
T Consensus 474 ~~~~~~~~~~~d~~Lq~i~~-------eS~~ie~~yghyfD~iIvN~--dld~t~~eL~~~iekl~tepq 534 (542)
T KOG0609|consen 474 VMSTIVAKQFTDEDLQEIID-------ESARIEQQYGHYFDLIIVNS--DLDKTFRELKTAIEKLRTEPQ 534 (542)
T ss_pred cccccccccCCHHHHHHHHH-------HHHHHHHHhhhheeEEEEcC--cHHHHHHHHHHHHHHhccCCc
Confidence 1122222222222 22223333444444677765 678888888888876655443
No 449
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.46 E-value=0.0024 Score=52.69 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh-----C--CeEeeHHHHHHHH
Q 028025 22 TVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLRAE 59 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~-----~--~~~i~~~~~~~~~ 59 (215)
..++|.|++|+|||+|+++++..+ + ..+++..++....
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 458999999999999999999887 2 4577777765544
No 450
>PRK08181 transposase; Validated
Probab=97.46 E-value=0.0042 Score=47.49 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE 59 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~~~~ 59 (215)
....++|.||||+|||.|+.+++... | ..+++..+++...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 34569999999999999999998655 3 4556666666554
No 451
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.46 E-value=9.6e-05 Score=56.08 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
-.++-+++|.|++|||||||++.|+-.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 346778999999999999999999854
No 452
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.46 E-value=0.0001 Score=55.13 Aligned_cols=29 Identities=31% Similarity=0.610 Sum_probs=24.7
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.-.+.-+++|.|++|||||||++.|+-.+
T Consensus 8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 8 SLKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33467799999999999999999998654
No 453
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.46 E-value=0.00011 Score=55.71 Aligned_cols=30 Identities=37% Similarity=0.329 Sum_probs=25.3
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.++-++.|.|++|||||||++.|+-.+
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 24 LEVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344567889999999999999999998654
No 454
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.46 E-value=0.00011 Score=53.59 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=26.1
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-+++|.|++||||||+.+.|+..+
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4444578899999999999999999997754
No 455
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.45 E-value=0.00011 Score=54.14 Aligned_cols=30 Identities=33% Similarity=0.373 Sum_probs=25.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++|||||||.+.|+-..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 344567899999999999999999997644
No 456
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00011 Score=55.66 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=25.3
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.++-+++|.|++|||||||++.|+-.+
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 24 LEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 334567899999999999999999998654
No 457
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.45 E-value=0.00011 Score=51.96 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=25.3
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-++.|.|++|||||||.+.|+-..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444577899999999999999999997654
No 458
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.45 E-value=0.00014 Score=54.19 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
..|..++|.|++||||||++..|-..+.
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 4678999999999999999988776664
No 459
>PRK10908 cell division protein FtsE; Provisional
Probab=97.44 E-value=0.00012 Score=54.51 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=25.6
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-....+++|.|++|||||||.+.|+-.+
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444578899999999999999999997654
No 460
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.44 E-value=0.00011 Score=50.82 Aligned_cols=30 Identities=23% Similarity=0.332 Sum_probs=25.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-++.|.|++||||||+.+.|+..+
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 444567899999999999999999997755
No 461
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.44 E-value=0.00015 Score=50.70 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
+++++.|+|..+||||||+..|...+.
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~ 27 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLK 27 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHH
Confidence 357899999999999999999988883
No 462
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.44 E-value=0.00018 Score=56.49 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
.|..+++.|+||+||||+++.+++.++..
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~ 70 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVGAE 70 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCcc
Confidence 35678889999999999999999988643
No 463
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.43 E-value=0.00011 Score=52.83 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=24.7
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.-.+.-++.|.|++|||||||.+.|+..+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33467789999999999999999998765
No 464
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.43 E-value=0.00011 Score=55.70 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=26.1
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-+++|.|++|||||||++.|+-.+
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 23 SFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444567899999999999999999998765
No 465
>PRK09183 transposase/IS protein; Provisional
Probab=97.43 E-value=0.00032 Score=53.42 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLL 56 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~ 56 (215)
....++|.||||+|||+++..++... | ..+++..++.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 45578899999999999999997654 3 2345544444
No 466
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.00012 Score=55.19 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=26.2
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.++-++.|.|++|||||||++.|+-.+
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444578899999999999999999998765
No 467
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.43 E-value=0.00041 Score=49.74 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHHHHHHHH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAE 59 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~~~~~~~ 59 (215)
++.-++|.|++|+|||.+|..++..+ ...+++..+++...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 35679999999999999999998766 35777888877765
No 468
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.43 E-value=0.00012 Score=54.63 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=25.7
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-....++.|.|++|||||||++.|+..+
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 27 SLHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3344567899999999999999999998654
No 469
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.43 E-value=0.00012 Score=53.86 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=25.5
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-++.|.|++||||||+++.|+...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444578899999999999999999997754
No 470
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.43 E-value=0.00014 Score=53.13 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+ +++|.|++||||||+.+.|+--+
T Consensus 21 ~~g-~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 21 PPG-LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 345 89999999999999999996443
No 471
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00011 Score=55.80 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=25.3
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.++-+++|.|++|||||||++.|+..+
T Consensus 33 l~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334467799999999999999999998765
No 472
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.43 E-value=9.3e-05 Score=57.61 Aligned_cols=37 Identities=22% Similarity=0.564 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC----CeEeeHHHHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLR 57 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~----~~~i~~~~~~~ 57 (215)
..-|+|.||||+|||.||-.+|+.+| |.-++.+++|.
T Consensus 65 GrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS 105 (450)
T COG1224 65 GRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS 105 (450)
T ss_pred ccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence 67899999999999999999999997 44455545444
No 473
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.43 E-value=0.00015 Score=53.93 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+..++.|.|++|||||||++.|+..+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998754
No 474
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00012 Score=54.17 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=24.5
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+ .+++|.|++|||||||++.|+-.+
T Consensus 19 l~i~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 19 FDLNE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred EEEcc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 44456 899999999999999999997654
No 475
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.42 E-value=0.00012 Score=53.61 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=25.7
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.++.+++|.|++||||||+++.++-.+
T Consensus 26 ~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 26 LEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 444578899999999999999999997755
No 476
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=97.42 E-value=8.4e-05 Score=53.24 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=31.6
Q ss_pred cCCCC--CeEEEEEcCCCCChHHHHHHHHHHh--------CCeEeeHHHHHH
Q 028025 16 VTVKK--PTVVFVLGGPGSGKGTQCANIVEHF--------GYTHLSAGDLLR 57 (215)
Q Consensus 16 ~~~~~--~~~I~i~G~~gsGKsTla~~La~~~--------~~~~i~~~~~~~ 57 (215)
+..+. |.+|.+.||-||||||++-+|-.++ ....++.||++-
T Consensus 24 f~~G~~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYL 75 (282)
T KOG2878|consen 24 FKDGDDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYL 75 (282)
T ss_pred ccCCCcCcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceee
Confidence 34444 9999999999999999998764433 246778888753
No 477
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.42 E-value=0.00016 Score=54.41 Aligned_cols=43 Identities=23% Similarity=0.422 Sum_probs=32.8
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHH
Q 028025 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAE 59 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~ 59 (215)
...+|.+|++.|..||||||++++|-..+. -.+++.|.-.+..
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v 62 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV 62 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence 345788999999999999999999988873 3456665554443
No 478
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.42 E-value=0.00014 Score=50.88 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
...|++.|++||||||++..|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998654
No 479
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.002 Score=54.78 Aligned_cols=47 Identities=26% Similarity=0.341 Sum_probs=39.4
Q ss_pred ccccccc--ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025 6 ETPVKEA--DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (215)
Q Consensus 6 ~~p~~~~--~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~ 52 (215)
+-|.++. +.+.+-+-+.-|.+.||||+|||-+|.+++...++.+++.
T Consensus 684 ~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisv 732 (952)
T KOG0735|consen 684 EWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISV 732 (952)
T ss_pred hccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEe
Confidence 4566755 4666667778899999999999999999999999888884
No 480
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00012 Score=54.64 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=25.3
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-...-++.|.|++|||||||.+.|+..+
T Consensus 24 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 334467789999999999999999998765
No 481
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.42 E-value=0.00012 Score=55.03 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=26.0
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.++-++.|.|++|||||||++.|+-.+
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444577899999999999999999998655
No 482
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00013 Score=51.96 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=25.6
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-....++.|.|++||||||+.+.++-.+
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 444567899999999999999999997765
No 483
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00012 Score=54.78 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=26.0
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.++-++.|.|++|||||||++.|+-.+
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3444567899999999999999999998665
No 484
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.42 E-value=0.00012 Score=54.28 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=25.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.++-++.|.|++||||||+++.|+-..
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 444578899999999999999999997654
No 485
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.42 E-value=0.00013 Score=52.40 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.2
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++||||||+.+.++...
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334567899999999999999999997654
No 486
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.42 E-value=0.00013 Score=53.53 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=25.9
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-++.|.|++|||||||.+.|+..+
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred eEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444567899999999999999999998754
No 487
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.41 E-value=0.0029 Score=47.55 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~ 52 (215)
.|.-|++.||||.|||-+|++||...+.+++..
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~v 182 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLV 182 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence 478899999999999999999999998666543
No 488
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.41 E-value=0.00013 Score=54.11 Aligned_cols=30 Identities=33% Similarity=0.355 Sum_probs=25.0
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-...-++.|.|++|||||||.+.|+-.+
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 333467889999999999999999997654
No 489
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00012 Score=54.87 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=23.7
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
+.-.++.++.|.||.|||||||.+.+.-
T Consensus 25 l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 25 LSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3445678999999999999999999855
No 490
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00018 Score=55.75 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
.|+-|+++||.|+|||.+|++||+--|.+++.
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiK 80 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIK 80 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 58899999999999999999999988877766
No 491
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.41 E-value=0.00013 Score=53.28 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=25.2
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++||||||+++.++-..
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 22 FHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344577899999999999999999997654
No 492
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.41 E-value=0.00015 Score=57.65 Aligned_cols=26 Identities=38% Similarity=0.677 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-+|+|+||+||||||+++.|.+.+
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998877
No 493
>PRK13764 ATPase; Provisional
Probab=97.41 E-value=0.00015 Score=61.12 Aligned_cols=27 Identities=26% Similarity=0.631 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
....|+|+|++||||||++++|++.++
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356699999999999999999998885
No 494
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00013 Score=55.67 Aligned_cols=30 Identities=23% Similarity=0.394 Sum_probs=25.0
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-...-+++|.|++|||||||++.|+-.+
T Consensus 34 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 34 LDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 333467889999999999999999998653
No 495
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.41 E-value=0.00016 Score=50.52 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
...+++.|++|+|||||...|....
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4889999999999999999996654
No 496
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00011 Score=53.75 Aligned_cols=30 Identities=37% Similarity=0.473 Sum_probs=25.2
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++|||||||++.|+-.+
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 334567799999999999999999997754
No 497
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.41 E-value=0.00013 Score=55.33 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=25.9
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.++-+++|.|++|||||||.+.|+-.+
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 20 NFSVAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444577899999999999999999998654
No 498
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00013 Score=54.97 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=25.8
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.++-+++|.|++|||||||++.|+-.+
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444567889999999999999999998654
No 499
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.41 E-value=0.00019 Score=62.62 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
..+.-|+|.||||+||||+++.++..++..++.
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~ 242 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIS 242 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEE
Confidence 456679999999999999999999999865543
No 500
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00013 Score=55.65 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=25.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++|||||||++.|+-.+
T Consensus 33 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 33 LSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 334567789999999999999999998654
Done!