BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028026
MAAIAWPYKLSPKVDCSHGHSKSVKKLTITPHYLSFSSSSTEQNIRFPVSKRNHLSNTTA
NSTLYATLNSPRGFGPPPKKTKKAKKPKTDNDSDDDGDEDEEGDEAEAGVIPEIVTNRMI
SRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSS
WDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSRKK

High Scoring Gene Products

Symbol, full name Information P value
PAM68
AT4G19100 		protein from Arabidopsis thaliana 3.6e-34
AT5G52780 protein from Arabidopsis thaliana 5.2e-10

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028026
        (215 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1006589876 - symbol:PAM68 "AT4G19100" species:...   371  3.6e-34   1
TAIR|locus:2149644 - symbol:AT5G52780 "AT5G52780" species...   143  5.2e-10   1


>TAIR|locus:1006589876 [details] [associations]
            symbol:PAM68 "AT4G19100" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016020 "membrane" evidence=ISS] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0010207 "photosystem II assembly"
            evidence=RCA] [GO:0015979 "photosynthesis" evidence=RCA]
            [GO:0016556 "mRNA modification" evidence=RCA] GO:GO:0016021
            GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL021687
            EMBL:AL161550 GO:GO:0009535 GO:GO:0015979 GO:GO:0009523
            UniGene:At.6 EMBL:BT029521 IPI:IPI00544605 PIR:T04431
            RefSeq:NP_974571.1 UniGene:At.66600 UniGene:At.67800 STRING:O49668
            PRIDE:O49668 EnsemblPlants:AT4G19100.1 GeneID:2745715
            KEGG:ath:AT4G19100 TAIR:At4g19100 eggNOG:NOG150159
            HOGENOM:HOG000114727 InParanoid:O49668 OMA:ISRMGFT PhylomeDB:O49668
            ProtClustDB:CLSN2720641 BioCyc:MetaCyc:MONOMER-16601
            Genevestigator:O49668 InterPro:IPR021855 Pfam:PF11947
            Uniprot:O49668
        Length = 214

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 76/155 (49%), Positives = 89/155 (57%)

Query:    64 LYATLNSPRGFG-----XXXXXXXXXXXXXXDNDSXXXXXXXXXXXXXXXXVIPEIVTNR 118
             L+AT+NSP+GFG                   ++D                 VIPEIVTNR
Sbjct:    60 LHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERERGVIPEIVTNR 119

Query:   119 MISRIGFTXXXXXXXXXXXXXXXXXXXXXXKIDVPSWLPVIVSFIFFGAALLGVSYGIVS 178
             MISR+GFT                      K+DVP+W+P IVSF+FFG AL GVSYGIVS
Sbjct:   120 MISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVS 179

Query:   179 SSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSR 213
             SSWDPLREGSLLGWNEA++NWPVFWQS W+    R
Sbjct:   180 SSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214


>TAIR|locus:2149644 [details] [associations]
            symbol:AT5G52780 "AT5G52780" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
            [GO:0010155 "regulation of proton transport" evidence=RCA]
            [GO:0010207 "photosystem II assembly" evidence=RCA] [GO:0046777
            "protein autophosphorylation" evidence=RCA] GO:GO:0016021
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009535 EMBL:AB025606
            InterPro:IPR021855 Pfam:PF11947 EMBL:BT025520 EMBL:AY086617
            EMBL:AK228908 IPI:IPI00545587 RefSeq:NP_200090.1 UniGene:At.29595
            STRING:Q9LTD9 PRIDE:Q9LTD9 EnsemblPlants:AT5G52780.1 GeneID:835355
            KEGG:ath:AT5G52780 TAIR:At5g52780 eggNOG:NOG289720
            HOGENOM:HOG000006323 InParanoid:Q9LTD9 OMA:KENWVEM PhylomeDB:Q9LTD9
            ProtClustDB:CLSN2916214 Genevestigator:Q9LTD9 Uniprot:Q9LTD9
        Length = 168

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 29/94 (30%), Positives = 46/94 (48%)

Query:   111 IPEIVTNRMISRIGFTXXXXXXXXXXXXXXXXXXXXXXKIDVPSWLPVIVSFIFFGAALL 170
             IP+ V  RM+ RI  +                        DVP W+P + + + FG++ L
Sbjct:    72 IPQEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSAL 131

Query:   171 GVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQ 204
             G++YG +S++ DP +  SL G  EA+ NW   W+
Sbjct:   132 GIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWK 165


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      215       163   0.00084  107 3  11 22  0.39    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  168 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.87u 0.10s 12.97t   Elapsed:  00:00:01
  Total cpu time:  12.87u 0.10s 12.97t   Elapsed:  00:00:01
  Start:  Thu May  9 23:11:15 2013   End:  Thu May  9 23:11:16 2013

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