BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028026
         (215 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O49668|PAM68_ARATH Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1
           SV=1
          Length = 214

 Score =  197 bits (500), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 114/155 (73%), Positives = 133/155 (85%), Gaps = 5/155 (3%)

Query: 64  LYATLNSPRGFGPPPKKTKKAKKPKTDNDSDDDGDEDEEGDEA-----EAGVIPEIVTNR 118
           L+AT+NSP+GFGPPPKKTKK+KKPK  N SD+D D+++E D+      E GVIPEIVTNR
Sbjct: 60  LHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERERGVIPEIVTNR 119

Query: 119 MISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVS 178
           MISR+GFTVG+PL +GLLFFPFFYYLKV LK+DVP+W+P IVSF+FFG AL GVSYGIVS
Sbjct: 120 MISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVS 179

Query: 179 SSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSR 213
           SSWDPLREGSLLGWNEA++NWPVFWQS W+    R
Sbjct: 180 SSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214


>sp|Q9LTD9|Y5278_ARATH Uncharacterized protein PAM68-like OS=Arabidopsis thaliana
           GN=At5g52780 PE=2 SV=1
          Length = 168

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 52/90 (57%)

Query: 115 VTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSY 174
           V  RM+ RI  +VG PL +G+        LK     DVP W+P + + + FG++ LG++Y
Sbjct: 76  VFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAY 135

Query: 175 GIVSSSWDPLREGSLLGWNEAQRNWPVFWQ 204
           G +S++ DP +  SL G  EA+ NW   W+
Sbjct: 136 GSLSTNLDPAKTNSLFGLKEAKENWVEMWK 165


>sp|Q14008|CKAP5_HUMAN Cytoskeleton-associated protein 5 OS=Homo sapiens GN=CKAP5 PE=1
           SV=3
          Length = 2032

 Score = 32.0 bits (71), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 62  STLYATLNSPRGFGPPPKKTKKAKKPKTDNDSDDDGDEDEEGDEAEAGVIPEI-----VT 116
           S + A     +G  PP      +K   +  D  +DGDE ++G      ++P       +T
Sbjct: 803 SQIDAEFEKMQGQSPPAPTRGISKHSTSGTDEGEDGDEPDDGSNDVVDLLPRTEISDKIT 862

Query: 117 NRMISRIG 124
           + ++S+IG
Sbjct: 863 SELVSKIG 870


>sp|Q04XE2|YIDC_LEPBL Membrane protein insertase YidC OS=Leptospira borgpetersenii
           serovar Hardjo-bovis (strain L550) GN=yidC PE=3 SV=1
          Length = 622

 Score = 31.2 bits (69), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 74  FGPPPKKTKKAKKPKTDNDSDDDGDEDEEGDEAEAGVIP 112
           F P PKKT + K+ K D  SDD  D+ ++  +     IP
Sbjct: 27  FPPTPKKTSETKEVKVDKPSDDKQDQIQKEKKESRTTIP 65


>sp|Q04W30|YIDC_LEPBJ Membrane protein insertase YidC OS=Leptospira borgpetersenii
           serovar Hardjo-bovis (strain JB197) GN=yidC PE=3 SV=1
          Length = 622

 Score = 31.2 bits (69), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 74  FGPPPKKTKKAKKPKTDNDSDDDGDEDEEGDEAEAGVIP 112
           F P PKKT + K+ K D  SDD  D+ ++  +     IP
Sbjct: 27  FPPTPKKTSETKEVKVDKPSDDKQDQIQKEKKESRTTIP 65


>sp|Q9CKG8|PDXA_PASMU 4-hydroxythreonine-4-phosphate dehydrogenase OS=Pasteurella
           multocida (strain Pm70) GN=pdxA PE=3 SV=1
          Length = 337

 Score = 31.2 bits (69), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 62  STLYATLNSPRGFGPPPKKTKKAK---KPKTDNDSDDDGDEDEEGDE-AEAGVIPEIVTN 117
           ST+  TL  P G GP       AK   + K +     D DE E+G E A+A  + E V+ 
Sbjct: 4   STVALTLGDPAGIGPELVAKLLAKQNIREKANIVLVADKDELEKGMEIAKAQFVYEEVSF 63

Query: 118 RMISRIGFTVGIPLLV 133
             + +  F  G+P+L+
Sbjct: 64  HQLGQYEFKTGVPVLI 79


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.135    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,511,848
Number of Sequences: 539616
Number of extensions: 3931103
Number of successful extensions: 34753
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 32865
Number of HSP's gapped (non-prelim): 1540
length of query: 215
length of database: 191,569,459
effective HSP length: 113
effective length of query: 102
effective length of database: 130,592,851
effective search space: 13320470802
effective search space used: 13320470802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)