Query 028026
Match_columns 215
No_of_seqs 92 out of 94
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 05:06:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11947 DUF3464: Protein of u 100.0 1.6E-57 3.4E-62 375.0 10.4 142 69-210 4-152 (153)
2 PF06781 UPF0233: Uncharacteri 88.0 2 4.2E-05 33.5 6.1 39 130-169 40-80 (87)
3 PLN02601 beta-carotene hydroxy 86.8 1.6 3.4E-05 40.8 5.7 56 113-171 80-146 (303)
4 PRK00159 putative septation in 85.3 3 6.5E-05 32.7 5.8 39 131-170 41-81 (87)
5 PRK02251 putative septation in 80.7 5.4 0.00012 31.3 5.6 14 131-144 42-55 (87)
6 KOG1600 Fatty acid desaturase 76.6 5.3 0.00011 37.7 5.3 46 122-176 42-87 (321)
7 PF07332 DUF1469: Protein of u 75.0 7.1 0.00015 29.7 4.8 87 116-208 31-120 (121)
8 PF06570 DUF1129: Protein of u 69.5 5.6 0.00012 33.5 3.4 48 119-167 146-193 (206)
9 PF08592 DUF1772: Domain of un 65.7 15 0.00031 27.9 4.7 85 116-201 26-119 (139)
10 PF14812 PBP1_TM: Transmembran 64.6 1.9 4E-05 33.4 -0.4 17 106-122 48-64 (81)
11 PRK10747 putative protoheme IX 58.0 17 0.00038 32.9 4.6 52 142-195 27-78 (398)
12 TIGR00893 2A0114 d-galactonate 56.8 9.3 0.0002 31.0 2.4 43 162-204 321-363 (399)
13 COG4709 Predicted membrane pro 55.8 15 0.00032 32.7 3.6 33 108-140 75-108 (195)
14 PF14940 TMEM219: Transmembran 52.8 12 0.00026 33.4 2.6 24 153-176 9-32 (223)
15 TIGR00540 hemY_coli hemY prote 52.3 19 0.00041 32.7 3.8 52 142-195 27-78 (409)
16 PF03806 ABG_transport: AbgT p 51.9 42 0.00091 33.4 6.4 25 159-183 299-323 (502)
17 PF04246 RseC_MucC: Positive r 51.5 14 0.00031 28.9 2.6 51 118-174 66-116 (135)
18 PF08041 PetM: PetM family of 49.1 16 0.00034 24.0 2.0 20 158-177 4-23 (31)
19 PF04120 Iron_permease: Low af 48.7 16 0.00034 30.3 2.5 44 117-160 2-45 (132)
20 PF11127 DUF2892: Protein of u 47.4 21 0.00045 24.9 2.7 20 154-173 33-52 (66)
21 PF13630 SdpI: SdpI/YhfL prote 47.0 44 0.00095 23.3 4.3 23 115-137 25-47 (76)
22 PF06728 PIG-U: GPI transamida 46.8 4.9 0.00011 37.2 -0.8 48 156-204 215-264 (382)
23 PF07214 DUF1418: Protein of u 45.1 13 0.00028 29.8 1.4 39 131-170 15-56 (96)
24 TIGR00879 SP MFS transporter, 44.4 12 0.00026 31.5 1.2 32 172-203 403-434 (481)
25 PRK11876 petM cytochrome b6-f 42.9 22 0.00049 23.5 2.1 21 158-178 6-26 (32)
26 PF06181 DUF989: Protein of un 42.9 20 0.00044 33.6 2.6 39 132-170 91-135 (300)
27 PRK03893 putative sialic acid 41.3 34 0.00074 30.3 3.6 39 165-203 379-417 (496)
28 PF15451 DUF4632: Domain of un 41.1 27 0.00059 26.6 2.6 30 101-130 16-45 (71)
29 PF11947 DUF3464: Protein of u 40.3 64 0.0014 27.5 4.9 31 107-137 53-83 (153)
30 PLN02220 delta-9 acyl-lipid de 39.0 42 0.00091 30.9 4.0 23 154-176 54-76 (299)
31 PF08285 DPM3: Dolichol-phosph 38.9 19 0.00042 27.9 1.6 43 158-208 44-86 (91)
32 COG1814 Uncharacterized membra 38.5 21 0.00045 30.9 1.9 69 105-178 127-196 (229)
33 PRK11492 hyfE hydrogenase 4 me 38.5 25 0.00055 30.8 2.4 42 131-172 99-142 (216)
34 PF11026 DUF2721: Protein of u 38.4 25 0.00055 28.1 2.2 23 150-172 93-115 (130)
35 TIGR00792 gph sugar (Glycoside 38.0 37 0.0008 29.4 3.3 76 123-203 72-151 (437)
36 PF13038 DUF3899: Domain of un 37.1 15 0.00033 27.1 0.7 7 131-137 80-86 (92)
37 PF03176 MMPL: MMPL family; I 37.0 18 0.0004 31.5 1.3 9 138-146 158-166 (333)
38 PRK12307 putative sialic acid 37.0 59 0.0013 28.1 4.3 79 114-203 75-157 (426)
39 PRK09874 drug efflux system pr 37.0 67 0.0014 27.4 4.6 78 115-203 77-157 (408)
40 COG0713 NuoK NADH:ubiquinone o 36.9 28 0.00061 28.1 2.2 21 152-172 2-22 (100)
41 TIGR00891 2A0112 putative sial 36.4 99 0.0021 25.9 5.5 79 114-203 69-151 (405)
42 PRK09669 putative symporter Ya 36.3 24 0.00052 31.4 1.9 37 167-203 123-161 (444)
43 PF00335 Tetraspannin: Tetrasp 35.3 13 0.00027 28.6 0.0 13 160-172 52-64 (221)
44 TIGR02230 ATPase_gene1 F0F1-AT 35.3 43 0.00093 26.7 3.0 26 119-147 44-69 (100)
45 PF07589 VPEP: PEP-CTERM motif 34.6 32 0.00069 21.0 1.7 14 161-174 7-20 (25)
46 KOG3882 Tetraspanin family int 34.1 56 0.0012 27.4 3.7 22 151-172 50-71 (237)
47 TIGR00898 2A0119 cation transp 33.5 82 0.0018 28.2 4.8 80 114-203 149-231 (505)
48 PRK08386 putative monovalent c 32.9 38 0.00081 28.2 2.4 34 156-191 71-104 (151)
49 PRK12756 phospho-2-dehydro-3-d 32.8 18 0.00038 34.5 0.5 11 13-23 262-272 (348)
50 PF08566 Pam17: Mitochondrial 32.1 52 0.0011 28.7 3.2 26 120-145 37-62 (173)
51 KOG4737 ATPase membrane sector 31.9 45 0.00098 31.7 3.0 34 150-185 277-311 (326)
52 PF12666 PrgI: PrgI family pro 31.3 27 0.00059 25.7 1.2 23 121-143 19-41 (93)
53 TIGR00145 FTR1 family protein. 31.1 29 0.00063 31.6 1.6 48 131-178 157-213 (283)
54 PLN00028 nitrate transmembrane 30.7 66 0.0014 29.5 3.8 75 114-199 93-170 (476)
55 PF02687 FtsX: FtsX-like perme 30.6 62 0.0013 22.8 3.0 62 110-171 38-108 (121)
56 PRK05122 major facilitator sup 30.6 59 0.0013 28.0 3.3 86 114-202 73-162 (399)
57 PRK12822 phospho-2-dehydro-3-d 30.5 20 0.00044 34.2 0.5 11 13-23 263-273 (356)
58 COG4967 PilV Tfp pilus assembl 30.2 37 0.0008 29.1 2.0 43 159-211 18-67 (162)
59 PF01788 PsbJ: PsbJ; InterPro 29.9 47 0.001 23.0 2.1 22 151-173 7-28 (40)
60 PF12606 RELT: Tumour necrosis 28.4 34 0.00075 24.3 1.3 22 157-178 3-24 (50)
61 COG3090 DctM TRAP-type C4-dica 28.3 79 0.0017 26.5 3.6 78 116-202 8-86 (177)
62 PF04478 Mid2: Mid2 like cell 27.7 41 0.0009 28.9 1.9 24 125-148 56-79 (154)
63 PRK10591 hypothetical protein; 27.6 37 0.0008 27.1 1.5 39 131-170 15-56 (92)
64 TIGR00819 ydaH p-Aminobenzoyl- 27.1 84 0.0018 31.3 4.1 24 154-180 304-327 (513)
65 PF03613 EIID-AGA: PTS system 26.9 32 0.00068 31.1 1.1 42 130-172 222-263 (264)
66 TIGR00881 2A0104 phosphoglycer 26.6 36 0.00077 27.9 1.3 80 114-204 52-135 (379)
67 TIGR00939 2a57 Equilibrative N 26.6 3.7E+02 0.0081 25.4 8.1 55 117-171 268-323 (437)
68 TIGR00893 2A0114 d-galactonate 26.4 43 0.00092 27.3 1.7 80 114-204 51-134 (399)
69 PF08219 TOM13: Outer membrane 26.3 87 0.0019 24.4 3.2 34 105-138 18-51 (77)
70 PRK08633 2-acyl-glycerophospho 26.1 74 0.0016 31.7 3.5 34 172-205 123-156 (1146)
71 PF14898 DUF4491: Domain of un 26.0 67 0.0015 25.7 2.6 37 125-162 6-42 (94)
72 PF09972 DUF2207: Predicted me 25.6 66 0.0014 28.9 2.9 16 123-138 400-415 (511)
73 PF03616 Glt_symporter: Sodium 25.5 1E+02 0.0022 28.8 4.1 32 125-160 224-255 (368)
74 PRK05415 hypothetical protein; 24.8 87 0.0019 29.7 3.6 24 150-173 93-116 (341)
75 KOG2866 Uncharacterized conser 24.7 71 0.0015 30.7 3.0 29 54-82 181-209 (349)
76 PF07235 DUF1427: Protein of u 24.6 36 0.00079 27.1 0.9 26 131-158 7-32 (90)
77 PRK10714 undecaprenyl phosphat 24.6 83 0.0018 28.1 3.3 9 152-160 265-273 (325)
78 PF06024 DUF912: Nucleopolyhed 24.6 87 0.0019 24.2 3.0 15 134-148 75-89 (101)
79 PRK12382 putative transporter; 24.6 1.5E+02 0.0033 25.4 4.8 86 114-202 73-162 (392)
80 PF00689 Cation_ATPase_C: Cati 24.5 86 0.0019 24.7 3.1 18 186-203 113-130 (182)
81 PLN02543 pfkB-type carbohydrat 24.4 1.2E+02 0.0027 29.6 4.7 15 164-178 179-193 (496)
82 PF07690 MFS_1: Major Facilita 24.4 1.9E+02 0.0042 23.5 5.1 49 157-205 87-138 (352)
83 PF04156 IncA: IncA protein; 24.3 63 0.0014 26.3 2.3 26 116-141 3-29 (191)
84 COG3716 ManZ Phosphotransferas 24.1 45 0.00098 30.9 1.6 42 130-177 228-269 (269)
85 PF02459 Adeno_terminal: Adeno 24.1 1.2E+02 0.0027 30.7 4.6 16 169-184 416-432 (548)
86 PRK10473 multidrug efflux syst 24.0 1.2E+02 0.0027 26.0 4.1 77 114-201 60-140 (392)
87 PF14362 DUF4407: Domain of un 24.0 1.6E+02 0.0034 26.0 4.8 47 150-202 41-87 (301)
88 PF01988 VIT1: VIT family; In 23.9 15 0.00034 31.1 -1.4 52 124-179 135-186 (213)
89 PF06496 DUF1097: Protein of u 23.8 26 0.00057 28.2 -0.0 22 147-168 15-36 (144)
90 TIGR00886 2A0108 nitrite extru 23.7 1.7E+02 0.0036 24.5 4.7 79 114-203 59-141 (366)
91 COG2991 Uncharacterized protei 23.6 58 0.0013 25.3 1.8 34 157-192 3-36 (77)
92 COG0577 SalY ABC-type antimicr 23.5 1E+02 0.0022 25.5 3.3 67 106-172 323-400 (419)
93 PRK03633 putative MFS family t 23.3 2E+02 0.0044 24.8 5.3 80 115-205 64-147 (381)
94 COG5249 RER1 Golgi protein inv 23.1 2.3E+02 0.005 24.9 5.6 20 149-168 133-152 (180)
95 TIGR00901 2A0125 AmpG-related 22.5 1.6E+02 0.0034 24.9 4.4 30 169-198 326-355 (356)
96 cd06174 MFS The Major Facilita 22.5 1.6E+02 0.0034 23.7 4.2 78 115-203 57-138 (352)
97 TIGR00880 2_A_01_02 Multidrug 22.2 1.7E+02 0.0037 20.0 3.8 30 173-202 72-101 (141)
98 PF10823 DUF2568: Protein of u 22.2 1.4E+02 0.0029 23.3 3.7 51 119-172 25-75 (93)
99 TIGR00879 SP MFS transporter, 21.9 2E+02 0.0043 24.3 4.9 84 115-206 94-181 (481)
100 TIGR00895 2A0115 benzoate tran 21.9 2.1E+02 0.0045 23.7 4.9 80 114-204 74-157 (398)
101 PF08941 USP8_interact: USP8 i 21.8 59 0.0013 28.7 1.7 23 110-132 83-105 (179)
102 TIGR00927 2A1904 K+-dependent 21.7 25 0.00053 38.1 -0.7 11 121-131 904-914 (1096)
103 PF07787 DUF1625: Protein of u 21.6 1.5E+02 0.0033 25.7 4.3 10 13-22 38-47 (248)
104 TIGR00891 2A0112 putative sial 21.5 1.3E+02 0.0029 25.1 3.8 36 168-203 344-379 (405)
105 TIGR01539 portal_lambda phage 21.5 99 0.0021 29.6 3.3 51 155-205 301-352 (458)
106 PF05136 Phage_portal_2: Phage 21.5 76 0.0017 28.9 2.5 48 152-199 302-350 (355)
107 PRK03893 putative sialic acid 21.5 85 0.0018 27.9 2.7 79 114-203 77-159 (496)
108 PRK15402 multidrug efflux syst 21.4 1.6E+02 0.0035 25.5 4.3 19 183-201 339-357 (406)
109 PF07771 TSGP1: Tick salivary 21.3 1.3E+02 0.0027 24.6 3.4 19 73-91 96-114 (120)
110 TIGR00897 2A0118 polyol permea 21.0 1.2E+02 0.0026 26.6 3.6 81 114-201 70-154 (402)
111 COG2733 Predicted membrane pro 21.0 82 0.0018 31.0 2.7 40 117-162 4-43 (415)
112 COG4078 Predicted membrane pro 20.9 90 0.0019 28.1 2.7 45 118-182 69-114 (221)
113 TIGR00896 CynX cyanate transpo 20.6 76 0.0016 26.9 2.1 76 114-201 57-135 (355)
114 PRK12755 phospho-2-dehydro-3-d 20.6 41 0.00089 32.1 0.6 11 13-23 265-275 (353)
115 PF14940 TMEM219: Transmembran 20.5 1.2E+02 0.0026 27.3 3.4 36 124-162 12-53 (223)
116 PF14610 DUF4448: Protein of u 20.4 36 0.00079 28.3 0.2 21 121-141 156-176 (189)
117 TIGR00034 aroFGH phospho-2-deh 20.4 42 0.00091 31.9 0.6 10 13-22 258-267 (344)
118 TIGR03062 pip_yhgE_Cterm YhgE/ 20.4 2.2E+02 0.0048 22.9 4.7 28 116-143 60-87 (208)
119 PF15383 TMEM237: Transmembran 20.4 1.9E+02 0.0041 26.3 4.7 38 115-152 89-127 (253)
120 PRK09261 phospho-2-dehydro-3-d 20.0 42 0.00091 31.9 0.5 10 13-22 264-273 (349)
No 1
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=100.00 E-value=1.6e-57 Score=375.01 Aligned_cols=142 Identities=43% Similarity=0.844 Sum_probs=125.1
Q ss_pred cCCCCCCCCccccccCCCCCCCCCC-------CCCCCCCccccccccCCCcHHHHHHHHhhHHHHhhhhHHhhhhhhhee
Q 028026 69 NSPRGFGPPPKKTKKAKKPKTDNDS-------DDDGDEDEEGDEAEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFF 141 (215)
Q Consensus 69 ~~p~pFep~~kk~Kk~kk~~~~~~~-------~~d~~~~~~~~~~~~~aIPevVs~RMlrRia~f~GiP~~lG~~~F~~~ 141 (215)
..|.||||.++|+|+.|+.+++... .+.++.+++..+.++.+||++|+|||+|||++|||||+++||++|++|
T Consensus 4 r~~~pfeP~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IP~~Vs~RM~rRm~~~~GiP~~lG~~~f~~~ 83 (153)
T PF11947_consen 4 RKRLPFEPSKKRKKNKKKQRKPPQQKAAAKSSASKKKKPQEKRDEDDSAIPEVVSNRMLRRMAVFVGIPTALGVAVFVVF 83 (153)
T ss_pred CCCCCCCCccchhhhhccccccccchhhhcccccccccccccccccccccCHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 4789999999988877665543321 111222334456778899999999999999999999999999999999
Q ss_pred eeeeeccccccCchhHHHHHHHHHHHhhhhhhhccccccCCCCCCCccccHHHhhhchHHHHHHHhhCC
Q 028026 142 YYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGG 210 (215)
Q Consensus 142 Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGISYGiLSASWDp~reGSlLG~eE~k~Nw~~mw~s~r~~~ 210 (215)
|||++++++|||+|+++++|++|||+||||||||||||||||+|+||||||+||++||+|||+++++..
T Consensus 84 y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~~a~~~~~ 152 (153)
T PF11947_consen 84 YYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPEREGSLLGWEEFKRNWGRMWEAWRSSR 152 (153)
T ss_pred HHHHhccccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcccHHHHHHhHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999864
No 2
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=88.01 E-value=2 Score=33.49 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=21.3
Q ss_pred hHHhhhhhhheeeeeeec--cccccCchhHHHHHHHHHHHhh
Q 028026 130 PLLVGLLFFPFFYYLKVV--LKIDVPSWLPVIVSFIFFGAAL 169 (215)
Q Consensus 130 P~~lG~~~F~~~Y~L~~~--~~~dvP~wv~~lvS~~~FGlGl 169 (215)
-+++|++-.++||+.... -.-++-.|=. ++-+++..+|+
T Consensus 40 lmllGL~WiVvyYi~~~~i~pi~~lG~WN~-~IGfg~~~~Gf 80 (87)
T PF06781_consen 40 LMLLGLLWIVVYYISGGQIPPIPDLGNWNL-AIGFGLMIVGF 80 (87)
T ss_pred HHHHHHHHHhhhhcccCCCCCcccccchHH-HHHHHHHHHHH
Confidence 467888877777766554 2334555633 33334443443
No 3
>PLN02601 beta-carotene hydroxylase
Probab=86.79 E-value=1.6 Score=40.84 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=32.2
Q ss_pred HHHHHHHHhh-----------HHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhh
Q 028026 113 EIVTNRMISR-----------IGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLG 171 (215)
Q Consensus 113 evVs~RMlrR-----------ia~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLG 171 (215)
.-|+.|+.|| ++-++||-....++++.=|+|-... -|+|-- -++..+++|..+++|
T Consensus 80 ~~~~~~~~~k~~er~ty~~aa~~ss~gi~s~a~~a~y~rf~~~~~~--g~~p~~-em~~~~al~lgtfvg 146 (303)
T PLN02601 80 SRLLKKAEKKKSERFTYLIAAVMSSFGITSMAIMAVYYRFSWQMKG--GEVSML-EMFGTFALSVGAAVG 146 (303)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhcHHHHHHHHHHHHHhhccCC--CCcCHH-HHHHHHHHHHHHHHH
Confidence 3466676665 4556677666666766666666654 466643 344444444445555
No 4
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=85.30 E-value=3 Score=32.70 Aligned_cols=39 Identities=23% Similarity=0.486 Sum_probs=21.9
Q ss_pred HHhhhhhhheeeeeeecccc--ccCchhHHHHHHHHHHHhhh
Q 028026 131 LLVGLLFFPFFYYLKVVLKI--DVPSWLPVIVSFIFFGAALL 170 (215)
Q Consensus 131 ~~lG~~~F~~~Y~L~~~~~~--dvP~wv~~lvS~~~FGlGlL 170 (215)
+.+|++-.+++|+....-.+ ++-.|= +++-++++-+|++
T Consensus 41 m~~GllWlvvyYl~~~~~P~m~~lG~WN-~~IGFg~~i~G~l 81 (87)
T PRK00159 41 MLIGLAWLVVNYLAGPAIPWMADLGPWN-YAIGFALMITGLL 81 (87)
T ss_pred HHHHHHHHHHHhhccCCCCCCcccCchh-HHHHHHHHHHHHH
Confidence 66788888888875432221 555663 3444444444443
No 5
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=80.67 E-value=5.4 Score=31.26 Aligned_cols=14 Identities=21% Similarity=0.876 Sum_probs=10.7
Q ss_pred HHhhhhhhheeeee
Q 028026 131 LLVGLLFFPFFYYL 144 (215)
Q Consensus 131 ~~lG~~~F~~~Y~L 144 (215)
+.+|++-.+++|+.
T Consensus 42 m~~Gl~WlvvyYl~ 55 (87)
T PRK02251 42 MIIGLIWLVVYYLS 55 (87)
T ss_pred HHHHHHHHHHHhhh
Confidence 56788888888774
No 6
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=76.63 E-value=5.3 Score=37.67 Aligned_cols=46 Identities=11% Similarity=0.347 Sum_probs=32.8
Q ss_pred hHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhcc
Q 028026 122 RIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGI 176 (215)
Q Consensus 122 Ria~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGISYGi 176 (215)
-|+.+++++++..++++.... . -.|.+++.++++..+|-|||+-|.
T Consensus 42 nv~~~~~l~~~a~ygl~~~~~--------~-~~w~t~~~~~~l~~v~glgITag~ 87 (321)
T KOG1600|consen 42 NVVLFSALHIVALYGLLAPPF--------S-AKWETLLFAFFLYAVGGLGITAGY 87 (321)
T ss_pred hhHHHHHHHHHHHHHHHHhhc--------c-chHHHHHHHHHHHHHhhceeeeeh
Confidence 466777777766555443211 1 138899999999999999999885
No 7
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=75.01 E-value=7.1 Score=29.72 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=41.3
Q ss_pred HHHHHhhHHHHhhhhHHhhhhhhheeeeeeecc--ccccCchhHHHH-HHHHHHHhhhhhhhccccccCCCCCCCccccH
Q 028026 116 TNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVL--KIDVPSWLPVIV-SFIFFGAALLGVSYGIVSSSWDPLREGSLLGW 192 (215)
Q Consensus 116 s~RMlrRia~f~GiP~~lG~~~F~~~Y~L~~~~--~~dvP~wv~~lv-S~~~FGlGlLGISYGiLSASWDp~reGSlLG~ 192 (215)
..|+.+..+.++..-.++.++++.++..+.... ...+|+|..+++ .+++++++++.+ .+.-..+. +.-..+
T Consensus 31 ~~~~~~~~~~~~~a~vl~~~~l~~l~~al~~~l~~~~~~~~~~a~liv~~~~l~la~i~~--~~~~~~l~----~~~~~~ 104 (121)
T PF07332_consen 31 ARRLGRGLALLVLAAVLALLALLFLLVALVFALWEALGLPPWLAFLIVAGLYLLLALILL--LIGRRRLR----RAPPPF 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH--HHHHHHHh----cCCCCH
Confidence 455666655554443333333322222222222 223467755544 444443433333 22222332 134567
Q ss_pred HHhhhchHHHHHHHhh
Q 028026 193 NEAQRNWPVFWQSLWS 208 (215)
Q Consensus 193 eE~k~Nw~~mw~s~r~ 208 (215)
++-..++.+-++.+++
T Consensus 105 ~~t~~~l~~d~~~lk~ 120 (121)
T PF07332_consen 105 EETIAELKEDIAALKE 120 (121)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 7888888877777765
No 8
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=69.51 E-value=5.6 Score=33.53 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=29.2
Q ss_pred HHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHH
Q 028026 119 MISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGA 167 (215)
Q Consensus 119 MlrRia~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGl 167 (215)
..+|+++.+++.++. +++|.+..+|-..-...+|+|+.++..+++|++
T Consensus 146 ~~k~~~~~~~~~~~w-~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~ 193 (206)
T PF06570_consen 146 WWKYILISVLAMVLW-IVIFVLTSFLPPVINPVLPPWVYIIIGVIAFAL 193 (206)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHccccCCcCCCHHHHHHHHHHHHHH
Confidence 345666666655544 444444555655555678888877776666654
No 9
>PF08592 DUF1772: Domain of unknown function (DUF1772); InterPro: IPR013901 This entry represents proteins of unknown function.
Probab=65.71 E-value=15 Score=27.91 Aligned_cols=85 Identities=13% Similarity=0.219 Sum_probs=34.7
Q ss_pred HHHHHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhccc------cccCCC--CCCC
Q 028026 116 TNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIV------SSSWDP--LREG 187 (215)
Q Consensus 116 s~RMlrRia~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGISYGiL------SASWDp--~reG 187 (215)
.++|-+|+..+...-.+++++.+....|+.....-+--.+..++++++++ ++.+.+++-+. =+.||. +.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~T~~~~~P~N~~l~~~~~~~~~~~ 104 (139)
T PF08592_consen 26 WQRFYRRGPRFMPPLSLLSALSYLYLAYVALRRRSRPAARLLWLAAAALL-LSIIPFTFLVNVPINNRLAAWDIESSPEE 104 (139)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHccccccccc
Confidence 45566666444444333444442222221111111222344444444333 33444443321 077882 2222
Q ss_pred ccccH-HHhhhchHH
Q 028026 188 SLLGW-NEAQRNWPV 201 (215)
Q Consensus 188 SlLG~-eE~k~Nw~~ 201 (215)
.--.| +++.+.|++
T Consensus 105 ~~~~~~~~l~~~W~~ 119 (139)
T PF08592_consen 105 APADWVRALLDRWGR 119 (139)
T ss_pred cchHHHHHHHHHHHH
Confidence 23334 566665554
No 10
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=64.60 E-value=1.9 Score=33.41 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred cccCCCcHHHHHHHHhh
Q 028026 106 AEAGVIPEIVTNRMISR 122 (215)
Q Consensus 106 ~~~~aIPevVs~RMlrR 122 (215)
.++..+|.-...|+-+|
T Consensus 48 eeee~m~rK~k~r~rkK 64 (81)
T PF14812_consen 48 EEEEPMPRKGKKRPRKK 64 (81)
T ss_dssp -----------------
T ss_pred hhccccccccccCcccc
Confidence 45667888877764433
No 11
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=57.95 E-value=17 Score=32.93 Aligned_cols=52 Identities=10% Similarity=0.149 Sum_probs=27.3
Q ss_pred eeeeeccccccCchhHHHHHHHHHHHhhhhhhhccccccCCCCCCCccccHHHh
Q 028026 142 YYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEA 195 (215)
Q Consensus 142 Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGISYGiLSASWDp~reGSlLG~eE~ 195 (215)
|++.+.+.+.|=+.+++++.++.+...++-+.+-++..-|.- ++.+-+|-.-
T Consensus 27 yv~i~~~~~~ie~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~ 78 (398)
T PRK10747 27 YVLIQTDNYNIETSVTGLAIILILAMVVLFAIEWLLRRIFRT--GARTRGWFVG 78 (398)
T ss_pred eEEEEECCEEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhhhHHHHH
Confidence 777776665555555555444444334443445555555553 4555555433
No 12
>TIGR00893 2A0114 d-galactonate transporter.
Probab=56.78 E-value=9.3 Score=31.03 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=28.9
Q ss_pred HHHHHHhhhhhhhccccccCCCCCCCccccHHHhhhchHHHHH
Q 028026 162 FIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQ 204 (215)
Q Consensus 162 ~~~FGlGlLGISYGiLSASWDp~reGSlLG~eE~k~Nw~~mw~ 204 (215)
+.+++.+...+.+.+++..-+++..|...|+-..-.|++.+.-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~ 363 (399)
T TIGR00893 321 LGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVG 363 (399)
T ss_pred HHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhh
Confidence 3444444455566666666677778999999888777776543
No 13
>COG4709 Predicted membrane protein [Function unknown]
Probab=55.80 E-value=15 Score=32.72 Aligned_cols=33 Identities=21% Similarity=0.529 Sum_probs=21.2
Q ss_pred cCCCcH-HHHHHHHhhHHHHhhhhHHhhhhhhhe
Q 028026 108 AGVIPE-IVTNRMISRIGFTVGIPLLVGLLFFPF 140 (215)
Q Consensus 108 ~~aIPe-vVs~RMlrRia~f~GiP~~lG~~~F~~ 140 (215)
..-+++ +++-=-+.=..+..|+|+++|+.+|++
T Consensus 75 ~~n~~~aii~~~~L~~~~v~i~Lpl~~~vi~~vi 108 (195)
T COG4709 75 QKNVRRAIIALIGLGLLAVIIGLPLLIGVILFVI 108 (195)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555 333334455678889999999886653
No 14
>PF14940 TMEM219: Transmembrane 219
Probab=52.83 E-value=12 Score=33.40 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=16.0
Q ss_pred CchhHHHHHHHHHHHhhhhhhhcc
Q 028026 153 PSWLPVIVSFIFFGAALLGVSYGI 176 (215)
Q Consensus 153 P~wv~~lvS~~~FGlGlLGISYGi 176 (215)
|+-|+|..+++.||+++||++|=|
T Consensus 9 PPlVvF~l~Ll~~aI~~l~Lg~yi 32 (223)
T PF14940_consen 9 PPLVVFTLCLLLLAISFLCLGYYI 32 (223)
T ss_pred CCchHHHHHHHHHHHHHheeeeEe
Confidence 666666666677766666666655
No 15
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=52.31 E-value=19 Score=32.68 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=26.4
Q ss_pred eeeeeccccccCchhHHHHHHHHHHHhhhhhhhccccccCCCCCCCccccHHHh
Q 028026 142 YYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEA 195 (215)
Q Consensus 142 Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGISYGiLSASWDp~reGSlLG~eE~ 195 (215)
|++.+...+.|=+.+++++.++.+...++-+-+.+++.-|.- ++.+-+|-.-
T Consensus 27 yv~i~~~~~~ie~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~--p~~~~~~~~~ 78 (409)
T TIGR00540 27 YVLIETANRIIEMSITGLAIFFIIALAIIFAFEWGLRRFFRL--GAHSRGWFSG 78 (409)
T ss_pred eEEEEECCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHH
Confidence 777776655555544444433333333333345566665653 4555555443
No 16
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=51.94 E-value=42 Score=33.36 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhhhhccccccCCC
Q 028026 159 IVSFIFFGAALLGVSYGIVSSSWDP 183 (215)
Q Consensus 159 lvS~~~FGlGlLGISYGiLSASWDp 183 (215)
++-+++|...+.|+.||+.|....-
T Consensus 299 IIpiI~l~F~i~GivYG~~sG~iks 323 (502)
T PF03806_consen 299 IIPIIFLFFLIPGIVYGIASGTIKS 323 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhceecC
Confidence 3345777788999999999987654
No 17
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=51.49 E-value=14 Score=28.95 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=34.3
Q ss_pred HHHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhh
Q 028026 118 RMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSY 174 (215)
Q Consensus 118 RMlrRia~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGISY 174 (215)
.+++-.++.-++|+++=++...+.+++-.. .+..++.+++.+++|.+.+-+
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l~~~~~~~------e~~~~l~~l~~l~~~~~~~~~ 116 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVLGSYLGGS------ELWAILGGLLGLALGFLILRL 116 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 456777888899988777666655555433 466667777777777666654
No 18
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=49.08 E-value=16 Score=24.04 Aligned_cols=20 Identities=35% Similarity=0.727 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhhhhhhccc
Q 028026 158 VIVSFIFFGAALLGVSYGIV 177 (215)
Q Consensus 158 ~lvS~~~FGlGlLGISYGiL 177 (215)
+-++.+||++-++|++.|++
T Consensus 4 f~~a~i~~~lvlvGla~Gf~ 23 (31)
T PF08041_consen 4 FNIAVICFGLVLVGLALGFV 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999998875
No 19
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=48.72 E-value=16 Score=30.29 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=35.7
Q ss_pred HHHHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHH
Q 028026 117 NRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIV 160 (215)
Q Consensus 117 ~RMlrRia~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lv 160 (215)
.|...+++-++|-|.+.+++++++.-|+..+..+..+.+--+++
T Consensus 2 ~r~s~~is~~~gs~~~f~~~~~~Ii~W~i~Gp~~~~sdtWQLvi 45 (132)
T PF04120_consen 2 ERFSNWISDVAGSPWAFVIAVAVIIVWAISGPVFGFSDTWQLVI 45 (132)
T ss_pred hHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCcchHHHHH
Confidence 68889999999999999999999999988887777664444443
No 20
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=47.44 E-value=21 Score=24.93 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHhhhhhh
Q 028026 154 SWLPVIVSFIFFGAALLGVS 173 (215)
Q Consensus 154 ~wv~~lvS~~~FGlGlLGIS 173 (215)
.|+..++.+.++..|+.|..
T Consensus 33 ~~~~~~~g~~ll~~g~~g~C 52 (66)
T PF11127_consen 33 GWLLGFVGAMLLVTGITGFC 52 (66)
T ss_pred HHHHHHHHHHHHHHHHHCcC
Confidence 68888888888888888854
No 21
>PF13630 SdpI: SdpI/YhfL protein family
Probab=46.97 E-value=44 Score=23.26 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=17.2
Q ss_pred HHHHHHhhHHHHhhhhHHhhhhh
Q 028026 115 VTNRMISRIGFTVGIPLLVGLLF 137 (215)
Q Consensus 115 Vs~RMlrRia~f~GiP~~lG~~~ 137 (215)
.+||...++.+..|+.+++.-.+
T Consensus 25 ~a~r~~g~~~~~~Gi~~~~~~~~ 47 (76)
T PF13630_consen 25 KAHRFAGKIFIIGGIVLLIIGII 47 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999998875554433
No 22
>PF06728 PIG-U: GPI transamidase subunit PIG-U; InterPro: IPR009600 Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the C terminus by GPI transamidase. The mammalian GPI transamidase is a complex of at least four subunits, GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent a fifth subunit in this complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI [].; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=46.81 E-value=4.9 Score=37.19 Aligned_cols=48 Identities=33% Similarity=0.514 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHhhhhhhhccccccCCCC--CCCccccHHHhhhchHHHHH
Q 028026 156 LPVIVSFIFFGAALLGVSYGIVSSSWDPL--REGSLLGWNEAQRNWPVFWQ 204 (215)
Q Consensus 156 v~~lvS~~~FGlGlLGISYGiLSASWDp~--reGSlLG~eE~k~Nw~~mw~ 204 (215)
+..++.+.+..++++.+||- +..|||-- .=|..+-.+....|+|-.|=
T Consensus 215 ~~~~~~f~~~~~~L~~~S~~-~~~sw~fl~~ty~~~l~~~dltPNlGl~WY 264 (382)
T PF06728_consen 215 LQILLIFIASLAALLLLSYL-ITGSWNFLDSTYGFILTVPDLTPNLGLWWY 264 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHhhcccCCCCCcchHHH
Confidence 33344444555667779999 88899942 34788888889999998883
No 23
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=45.11 E-value=13 Score=29.77 Aligned_cols=39 Identities=21% Similarity=0.512 Sum_probs=26.8
Q ss_pred HHhhhhhhheeeeeeeccccccCchh---HHHHHHHHHHHhhh
Q 028026 131 LLVGLLFFPFFYYLKVVLKIDVPSWL---PVIVSFIFFGAALL 170 (215)
Q Consensus 131 ~~lG~~~F~~~Y~L~~~~~~dvP~wv---~~lvS~~~FGlGlL 170 (215)
=++||.++++.|+ ..++.+.+|.+. ...+.++|.|+++.
T Consensus 15 E~lG~~LLv~a~L-sin~~l~LP~~l~~~~aai~MIf~Gi~lM 56 (96)
T PF07214_consen 15 EVLGMILLVLAYL-SINDYLSLPAPLSTPTAAIAMIFVGIGLM 56 (96)
T ss_pred HHHHHHHHHHHHH-HHcccccCcccccCchHHHHHHHHHHHHH
Confidence 3578888888884 466667888664 34566777777653
No 24
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=44.36 E-value=12 Score=31.55 Aligned_cols=32 Identities=19% Similarity=0.045 Sum_probs=21.3
Q ss_pred hhhccccccCCCCCCCccccHHHhhhchHHHH
Q 028026 172 VSYGIVSSSWDPLREGSLLGWNEAQRNWPVFW 203 (215)
Q Consensus 172 ISYGiLSASWDp~reGSlLG~eE~k~Nw~~mw 203 (215)
+.+-+++....++..|...|+-.+-.|++.+.
T Consensus 403 ~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i 434 (481)
T TIGR00879 403 VPWVIVSEIFPLSLRPKGISIAVAANWLANFI 434 (481)
T ss_pred eehhhhhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 33334455556666788899888888877654
No 25
>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed
Probab=42.90 E-value=22 Score=23.47 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhhhhhcccc
Q 028026 158 VIVSFIFFGAALLGVSYGIVS 178 (215)
Q Consensus 158 ~lvS~~~FGlGlLGISYGiLS 178 (215)
+-++.++|++-++|++.|++.
T Consensus 6 f~~A~i~~~LvlvGlalGf~L 26 (32)
T PRK11876 6 FGIAALFWVLIPVGLAGGALL 26 (32)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999874
No 26
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.88 E-value=20 Score=33.62 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=29.9
Q ss_pred Hhhhhhhheeee------eeeccccccCchhHHHHHHHHHHHhhh
Q 028026 132 LVGLLFFPFFYY------LKVVLKIDVPSWLPVIVSFIFFGAALL 170 (215)
Q Consensus 132 ~lG~~~F~~~Y~------L~~~~~~dvP~wv~~lvS~~~FGlGlL 170 (215)
+.|+++|.+.|| |......|+.+|+..+.|+++..+|-+
T Consensus 91 lSGfaLl~~~Yy~~a~~yLiDp~v~~ls~~~Ai~isl~~l~~gWl 135 (300)
T PF06181_consen 91 LSGFALLIVVYYFNAELYLIDPSVMDLSPWQAIAISLGSLVLGWL 135 (300)
T ss_pred HHHHHHHHHHHHhCCceEEECCcccCCCHHHHHHHHHHHHHHHHH
Confidence 456666666665 778888999999999998888776653
No 27
>PRK03893 putative sialic acid transporter; Provisional
Probab=41.29 E-value=34 Score=30.32 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=26.4
Q ss_pred HHHhhhhhhhccccccCCCCCCCccccHHHhhhchHHHH
Q 028026 165 FGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFW 203 (215)
Q Consensus 165 FGlGlLGISYGiLSASWDp~reGSlLG~eE~k~Nw~~mw 203 (215)
++.|..++.+.+++...++++.|+.+|+-..-.+++-+.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l 417 (496)
T PRK03893 379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGAL 417 (496)
T ss_pred HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHH
Confidence 344444455566777778888899999877766665444
No 28
>PF15451 DUF4632: Domain of unknown function (DUF4632)
Probab=41.12 E-value=27 Score=26.57 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=22.8
Q ss_pred ccccccccCCCcHHHHHHHHhhHHHHhhhh
Q 028026 101 EEGDEAEAGVIPEIVTNRMISRIGFTVGIP 130 (215)
Q Consensus 101 ~~~~~~~~~aIPevVs~RMlrRia~f~GiP 130 (215)
|++++.+.++=|...-.|-+||+---|-.|
T Consensus 16 d~e~ese~gagprs~gwralrrlwdrvl~p 45 (71)
T PF15451_consen 16 DEEEESEKGAGPRSAGWRALRRLWDRVLAP 45 (71)
T ss_pred ccccccccCCCCccccHHHHHHHHHHHHhH
Confidence 355666777889999999999987665554
No 29
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=40.28 E-value=64 Score=27.46 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=22.4
Q ss_pred ccCCCcHHHHHHHHhhHHHHhhhhHHhhhhh
Q 028026 107 EAGVIPEIVTNRMISRIGFTVGIPLLVGLLF 137 (215)
Q Consensus 107 ~~~aIPevVs~RMlrRia~f~GiP~~lG~~~ 137 (215)
=..++=+.+..||+-.+++-+++-+++-+++
T Consensus 53 IP~~Vs~RM~rRm~~~~GiP~~lG~~~f~~~ 83 (153)
T PF11947_consen 53 IPEVVSNRMLRRMAVFVGIPTALGVAVFVVF 83 (153)
T ss_pred cCHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 3447889999999999988666555444443
No 30
>PLN02220 delta-9 acyl-lipid desaturase
Probab=39.02 E-value=42 Score=30.90 Aligned_cols=23 Identities=13% Similarity=0.442 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHhhhhhhhcc
Q 028026 154 SWLPVIVSFIFFGAALLGVSYGI 176 (215)
Q Consensus 154 ~wv~~lvS~~~FGlGlLGISYGi 176 (215)
.|..+++.++++.++.+||+-|.
T Consensus 54 ~w~~~~~~~~~~~it~lGiT~Gy 76 (299)
T PLN02220 54 KWEALRFGLILYIVTGLSITFSY 76 (299)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777777888889998773
No 31
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=38.88 E-value=19 Score=27.90 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhhhhhccccccCCCCCCCccccHHHhhhchHHHHHHHhh
Q 028026 158 VIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWS 208 (215)
Q Consensus 158 ~lvS~~~FGlGlLGISYGiLSASWDp~reGSlLG~eE~k~Nw~~mw~s~r~ 208 (215)
++++++++.++.+| ||++.-.=-|+. -+|.++-+.+-.+.+|.
T Consensus 44 ~Lv~fG~Ysl~~lg--y~v~tFnDcpeA------~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 44 ALVSFGCYSLFTLG--YGVATFNDCPEA------AKELQKEIKEAKADLRK 86 (91)
T ss_pred HHHHHHHHHHHHHH--HhhhccCCCHHH------HHHHHHHHHHHHHHHHH
Confidence 46788888777777 676655433322 24444444444444544
No 32
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=38.49 E-value=21 Score=30.95 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=44.9
Q ss_pred ccccCCCcHHH-HHHHHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhcccc
Q 028026 105 EAEAGVIPEIV-TNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVS 178 (215)
Q Consensus 105 ~~~~~aIPevV-s~RMlrRia~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGISYGiLS 178 (215)
.+.+..|.+.. +.++..-. +.+|+-.++|.++.++-|++...... ..+..+.+..+.++++|+-+|.+|
T Consensus 127 ~~~~~~i~~~~~~~~~~~~~-l~sg~s~~~G~l~Pllp~~~~~~~~~----al~~si~~~~l~L~ilG~~~a~~s 196 (229)
T COG1814 127 GRLSMGIGAYLSSRPLLAAT-LSSGISFIIGALLPLLPFFFLPDVLS----ALIASIILALLALAILGAVLARLS 196 (229)
T ss_pred HHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455666666 35555542 57888888888877777777644221 124455566777889998888776
No 33
>PRK11492 hyfE hydrogenase 4 membrane subunit; Provisional
Probab=38.48 E-value=25 Score=30.81 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=22.8
Q ss_pred HHhhhhhhheeeeeeeccc--cccCchhHHHHHHHHHHHhhhhh
Q 028026 131 LLVGLLFFPFFYYLKVVLK--IDVPSWLPVIVSFIFFGAALLGV 172 (215)
Q Consensus 131 ~~lG~~~F~~~Y~L~~~~~--~dvP~wv~~lvS~~~FGlGlLGI 172 (215)
+.+|.++..++|++...-. .+...--.+.+++.+|.+|++|+
T Consensus 99 ~ll~~~~~i~s~~~~~~i~~~~~~~~~~~l~~a~~lf~iGl~~~ 142 (216)
T PRK11492 99 ILLAALIVLLCAFVVQPVKLPMALGLKPALAVSLGHFLLGLLCI 142 (216)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555543311 11112235677888888888875
No 34
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=38.39 E-value=25 Score=28.11 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=13.4
Q ss_pred cccCchhHHHHHHHHHHHhhhhh
Q 028026 150 IDVPSWLPVIVSFIFFGAALLGV 172 (215)
Q Consensus 150 ~dvP~wv~~lvS~~~FGlGlLGI 172 (215)
.+...++.|+.+++++.+|++-+
T Consensus 93 ~~~~~~~lF~~am~~l~~sl~~f 115 (130)
T PF11026_consen 93 LSWLVAILFVLAMLLLIASLVLF 115 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666777776666543
No 35
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=38.05 E-value=37 Score=29.38 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=41.6
Q ss_pred HHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHH--HhhhhhhhccccccC--CCCCCCccccHHHhhhc
Q 028026 123 IGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFG--AALLGVSYGIVSSSW--DPLREGSLLGWNEAQRN 198 (215)
Q Consensus 123 ia~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FG--lGlLGISYGiLSASW--Dp~reGSlLG~eE~k~N 198 (215)
+.+...+++++++..+...--. ......+.+++..++++ .++..+.|..+.+.. |+++.+.+.|+.++-.|
T Consensus 72 ~i~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~ 146 (437)
T TIGR00792 72 WLLIGAIPFSIVLVLLFTTPDF-----SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGAT 146 (437)
T ss_pred hHHHhHHHHHHHHHHHHhCCCC-----CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHH
Confidence 4556667777665544321100 00011222333333333 345667888887765 56677888898888777
Q ss_pred hHHHH
Q 028026 199 WPVFW 203 (215)
Q Consensus 199 w~~mw 203 (215)
++-+.
T Consensus 147 ~g~~l 151 (437)
T TIGR00792 147 LGGLL 151 (437)
T ss_pred HHHHH
Confidence 76543
No 36
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=37.14 E-value=15 Score=27.11 Aligned_cols=7 Identities=57% Similarity=0.501 Sum_probs=2.7
Q ss_pred HHhhhhh
Q 028026 131 LLVGLLF 137 (215)
Q Consensus 131 ~~lG~~~ 137 (215)
.++.+..
T Consensus 80 ~ll~l~~ 86 (92)
T PF13038_consen 80 LLLILLS 86 (92)
T ss_pred HHHHHHH
Confidence 3333333
No 37
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=37.00 E-value=18 Score=31.48 Aligned_cols=9 Identities=0% Similarity=0.253 Sum_probs=3.4
Q ss_pred hheeeeeee
Q 028026 138 FPFFYYLKV 146 (215)
Q Consensus 138 F~~~Y~L~~ 146 (215)
+++++.+.+
T Consensus 158 lvl~~~fRs 166 (333)
T PF03176_consen 158 LVLLLVFRS 166 (333)
T ss_pred hhhhhHHHH
Confidence 333333443
No 38
>PRK12307 putative sialic acid transporter; Provisional
Probab=36.99 E-value=59 Score=28.15 Aligned_cols=79 Identities=9% Similarity=0.061 Sum_probs=43.5
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhh---hhhhhccccccCCCCCCCcc
Q 028026 114 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAAL---LGVSYGIVSSSWDPLREGSL 189 (215)
Q Consensus 114 vVs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGl---LGISYGiLSASWDp~reGSl 189 (215)
.++||.=||..+..+. -+++|...+.+. +.+..+++.-++.|+|. ......+++..|++++.|..
T Consensus 75 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~ 143 (426)
T PRK12307 75 LLADKFGRKPLMMWSIVAYSVGTGLSGLA-----------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKA 143 (426)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHh
Confidence 4567887787776665 333333322221 12333444444444432 22345556666777777888
Q ss_pred ccHHHhhhchHHHH
Q 028026 190 LGWNEAQRNWPVFW 203 (215)
Q Consensus 190 LG~eE~k~Nw~~mw 203 (215)
.|+-.+-.+++.+.
T Consensus 144 ~~~~~~~~~lg~~~ 157 (426)
T PRK12307 144 SAFLVSGFGIGNII 157 (426)
T ss_pred hhHHHHHHhHHHHH
Confidence 88877766665544
No 39
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=36.95 E-value=67 Score=27.36 Aligned_cols=78 Identities=8% Similarity=0.088 Sum_probs=39.4
Q ss_pred HHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHh--hhhhhhccccccCCCCCCCcccc
Q 028026 115 VTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAA--LLGVSYGIVSSSWDPLREGSLLG 191 (215)
Q Consensus 115 Vs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlG--lLGISYGiLSASWDp~reGSlLG 191 (215)
++||+=||..+..+. ..+++...+.. .+++..+++..++.|++ ........+...+++++.|...|
T Consensus 77 l~dr~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (408)
T PRK09874 77 LADRKGRKIMLLRSALGMGIVMVLMGL-----------AQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALG 145 (408)
T ss_pred HhhhhCcHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHH
Confidence 567777776665554 33333322211 12233344444444442 22222223444566677788888
Q ss_pred HHHhhhchHHHH
Q 028026 192 WNEAQRNWPVFW 203 (215)
Q Consensus 192 ~eE~k~Nw~~mw 203 (215)
+-..-.+++.+.
T Consensus 146 ~~~~~~~~g~~~ 157 (408)
T PRK09874 146 TLSTGGVSGALL 157 (408)
T ss_pred HHHHHHHHHHHH
Confidence 877776666544
No 40
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]
Probab=36.91 E-value=28 Score=28.09 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=17.9
Q ss_pred cCchhHHHHHHHHHHHhhhhh
Q 028026 152 VPSWLPVIVSFIFFGAALLGV 172 (215)
Q Consensus 152 vP~wv~~lvS~~~FGlGlLGI 172 (215)
+|.+..++++.++|.+|+.|+
T Consensus 2 i~l~~~l~laa~LF~IGl~Gv 22 (100)
T COG0713 2 IPLQHYLILAALLFTIGLYGL 22 (100)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 467778899999999999886
No 41
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=36.43 E-value=99 Score=25.86 Aligned_cols=79 Identities=18% Similarity=0.242 Sum_probs=43.3
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhh---hhhhccccccCCCCCCCcc
Q 028026 114 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALL---GVSYGIVSSSWDPLREGSL 189 (215)
Q Consensus 114 vVs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlL---GISYGiLSASWDp~reGSl 189 (215)
.++||.=||-.+..+. -.+++...+.+ .+++..+++..++.|+|.- ......++..+++++.|..
T Consensus 69 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~ 137 (405)
T TIGR00891 69 LWGDRYGRRLPMVTSIVLFSAGTLACGF-----------APGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKA 137 (405)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHH
Confidence 3567776665555443 33333332221 1244455555555555432 2233445566677778888
Q ss_pred ccHHHhhhchHHHH
Q 028026 190 LGWNEAQRNWPVFW 203 (215)
Q Consensus 190 LG~eE~k~Nw~~mw 203 (215)
.|+-..-.+++.+.
T Consensus 138 ~~~~~~~~~~g~~~ 151 (405)
T TIGR00891 138 SGLLISGYAVGAVV 151 (405)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887776666544
No 42
>PRK09669 putative symporter YagG; Provisional
Probab=36.26 E-value=24 Score=31.42 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=27.7
Q ss_pred HhhhhhhhccccccC--CCCCCCccccHHHhhhchHHHH
Q 028026 167 AALLGVSYGIVSSSW--DPLREGSLLGWNEAQRNWPVFW 203 (215)
Q Consensus 167 lGlLGISYGiLSASW--Dp~reGSlLG~eE~k~Nw~~mw 203 (215)
..+..+.|+.|.+.| |+++.+++-+|..+-.|++-+-
T Consensus 123 ~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i 161 (444)
T PRK09669 123 YTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLI 161 (444)
T ss_pred HHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 446888899998877 5466678888888887776443
No 43
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=35.30 E-value=13 Score=28.60 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhh
Q 028026 160 VSFIFFGAALLGV 172 (215)
Q Consensus 160 vS~~~FGlGlLGI 172 (215)
+.++.+.++++|+
T Consensus 52 ~G~~~~~~~~~G~ 64 (221)
T PF00335_consen 52 IGIFILIISFLGC 64 (221)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3334444455554
No 44
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=35.28 E-value=43 Score=26.65 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=18.9
Q ss_pred HHhhHHHHhhhhHHhhhhhhheeeeeeec
Q 028026 119 MISRIGFTVGIPLLVGLLFFPFFYYLKVV 147 (215)
Q Consensus 119 MlrRia~f~GiP~~lG~~~F~~~Y~L~~~ 147 (215)
|+.-|++.+.+|+++|+.+- +||..+
T Consensus 44 ~~g~IG~~~v~pil~G~~lG---~WLD~~ 69 (100)
T TIGR02230 44 MFGLIGWSVAIPTLLGVAVG---IWLDRH 69 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhh
Confidence 56778888999999988743 355544
No 45
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=34.62 E-value=32 Score=21.03 Aligned_cols=14 Identities=29% Similarity=0.838 Sum_probs=9.9
Q ss_pred HHHHHHHhhhhhhh
Q 028026 161 SFIFFGAALLGVSY 174 (215)
Q Consensus 161 S~~~FGlGlLGISY 174 (215)
++++|++|++|+..
T Consensus 7 t~~l~~~gl~~l~~ 20 (25)
T PF07589_consen 7 TLALLGLGLLGLAF 20 (25)
T ss_pred HHHHHHHHHHHHHH
Confidence 46677778877765
No 46
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=34.07 E-value=56 Score=27.37 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.1
Q ss_pred ccCchhHHHHHHHHHHHhhhhh
Q 028026 151 DVPSWLPVIVSFIFFGAALLGV 172 (215)
Q Consensus 151 dvP~wv~~lvS~~~FGlGlLGI 172 (215)
..+.|+.+++..+.|.+|++|.
T Consensus 50 ~~~~~ili~~G~v~~~v~flGc 71 (237)
T KOG3882|consen 50 LVPAYILIAVGGVVFLVGFLGC 71 (237)
T ss_pred hcchhhhhhhhHHHHHHHHhhh
Confidence 4688999999999999999994
No 47
>TIGR00898 2A0119 cation transport protein.
Probab=33.51 E-value=82 Score=28.21 Aligned_cols=80 Identities=6% Similarity=0.012 Sum_probs=40.8
Q ss_pred HHHHHHHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhh---hhhccccccCCCCCCCccc
Q 028026 114 IVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLG---VSYGIVSSSWDPLREGSLL 190 (215)
Q Consensus 114 vVs~RMlrRia~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLG---ISYGiLSASWDp~reGSlL 190 (215)
.++||.-||..+..+.-+.. ++.+.. .+ .|++..+++..++.|+|.-+ +.+.+++--.++++.|...
T Consensus 149 ~l~Dr~Grr~~~~~~~~~~~-i~~~~~-~~--------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~ 218 (505)
T TIGR00898 149 YLSDRFGRKKVLLLSTLVTA-VSGVLT-AF--------SPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVG 218 (505)
T ss_pred HhhhhccchHHHHHHHHHHH-HHHHHH-HH--------cccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHH
Confidence 45788888877666653222 111111 11 23444555555555544333 3444555555555567777
Q ss_pred cHHHhhhchHHHH
Q 028026 191 GWNEAQRNWPVFW 203 (215)
Q Consensus 191 G~eE~k~Nw~~mw 203 (215)
|+-.+--+++.+.
T Consensus 219 ~~~~~~~~~g~~~ 231 (505)
T TIGR00898 219 TLIQVFFSLGLVL 231 (505)
T ss_pred HHHHHHHHHHHHH
Confidence 7665555555443
No 48
>PRK08386 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=32.87 E-value=38 Score=28.25 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHhhhhhhhccccccCCCCCCCcccc
Q 028026 156 LPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLG 191 (215)
Q Consensus 156 v~~lvS~~~FGlGlLGISYGiLSASWDp~reGSlLG 191 (215)
+..+.-+++.++|++|+-+|.|...|.. .+.++|
T Consensus 71 l~~~Gll~~~~~gl~~l~~gfl~~~~~~--~~~~l~ 104 (151)
T PRK08386 71 LEGLGGLVFLGAAMLGISVAFFYNILWH--TGPLFG 104 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccccc
Confidence 3444556788899999999966666665 456665
No 49
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=32.81 E-value=18 Score=34.54 Aligned_cols=11 Identities=45% Similarity=0.706 Sum_probs=8.6
Q ss_pred cccCCCCCccc
Q 028026 13 KVDCSHGHSKS 23 (215)
Q Consensus 13 ~~~~~~~~~~~ 23 (215)
-||||||.|..
T Consensus 262 mVDcSH~NS~K 272 (348)
T PRK12756 262 VVDFSHGNCQK 272 (348)
T ss_pred EEECCCcccCC
Confidence 47999998753
No 50
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=32.13 E-value=52 Score=28.72 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=21.2
Q ss_pred HhhHHHHhhhhHHhhhhhhheeeeee
Q 028026 120 ISRIGFTVGIPLLVGLLFFPFFYYLK 145 (215)
Q Consensus 120 lrRia~f~GiP~~lG~~~F~~~Y~L~ 145 (215)
=||+...++||++++-+...+.|+..
T Consensus 37 rrr~~~~~si~t~~~g~~~g~~yl~~ 62 (173)
T PF08566_consen 37 RRRINLVSSIPTGLLGSSAGWAYLST 62 (173)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 47899999999998888777777663
No 51
>KOG4737 consensus ATPase membrane sector associated protein [Energy production and conversion]
Probab=31.87 E-value=45 Score=31.65 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=26.3
Q ss_pred cccCc-hhHHHHHHHHHHHhhhhhhhccccccCCCCC
Q 028026 150 IDVPS-WLPVIVSFIFFGAALLGVSYGIVSSSWDPLR 185 (215)
Q Consensus 150 ~dvP~-wv~~lvS~~~FGlGlLGISYGiLSASWDp~r 185 (215)
.|.|. +..++.-++.|+++|+=|.||| ||.||++
T Consensus 277 sdYpviFni~Lw~mvil~lali~i~y~i--a~mDPg~ 311 (326)
T KOG4737|consen 277 SDYPVIFNIFLWLMVILVLALIYIVYGI--ASMDPGK 311 (326)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCc
Confidence 45554 3456667899999999999999 6789965
No 52
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=31.29 E-value=27 Score=25.70 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=13.2
Q ss_pred hhHHHHhhhhHHhhhhhhheeee
Q 028026 121 SRIGFTVGIPLLVGLLFFPFFYY 143 (215)
Q Consensus 121 rRia~f~GiP~~lG~~~F~~~Y~ 143 (215)
.|=.++.++..++|.+++.+.+.
T Consensus 19 ~RQl~~l~~~~~~~~~~~~~~~~ 41 (93)
T PF12666_consen 19 LRQLICLAIGALVGVGVYLLLWF 41 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665554433
No 53
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=31.08 E-value=29 Score=31.60 Aligned_cols=48 Identities=23% Similarity=0.133 Sum_probs=32.8
Q ss_pred HHhhhhhhheeeeeeeccccccCchhHHHHHH---HHHHHhhhh------hhhcccc
Q 028026 131 LLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSF---IFFGAALLG------VSYGIVS 178 (215)
Q Consensus 131 ~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~---~~FGlGlLG------ISYGiLS 178 (215)
.++|+++..+.+|+.-+....+|.-..|.++. .++++|++| ...|.+.
T Consensus 157 ~~~Gl~~~~~~g~li~~~~~~i~l~~FF~~t~~lL~llAagl~~~gv~~lq~ag~l~ 213 (283)
T TIGR00145 157 AVAGLIVAVVVGVLLYRGGSRLSLKIFFILSSSLLLFIAAGLLGGGNHRFNLAGGGD 213 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 45666666667777667777788777776663 556778888 6666655
No 54
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=30.72 E-value=66 Score=29.46 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=35.6
Q ss_pred HHHHHHHhhHHHHhhhh-HHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhh--hhccccccCCCCCCCccc
Q 028026 114 IVTNRMISRIGFTVGIP-LLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGV--SYGIVSSSWDPLREGSLL 190 (215)
Q Consensus 114 vVs~RMlrRia~f~GiP-~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGI--SYGiLSASWDp~reGSlL 190 (215)
.++||+-||..+.+++- .++++..+.+ .+++..+++..++.|++..+. ...+++--+.+++.|...
T Consensus 93 ~l~dr~G~r~~~~~~~~~~~~~~~~~~~-----------~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~ 161 (476)
T PLN00028 93 PVCDLYGPRYGSAFLLMLTAPAVFCMSL-----------VSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTAN 161 (476)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHH-----------hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHH
Confidence 34588887777666552 2222222211 122333444444444433221 222344445566778888
Q ss_pred cHHHhhhch
Q 028026 191 GWNEAQRNW 199 (215)
Q Consensus 191 G~eE~k~Nw 199 (215)
|+-..-.|+
T Consensus 162 g~~~~~~~~ 170 (476)
T PLN00028 162 GIAAGWGNL 170 (476)
T ss_pred HHHHHHHHH
Confidence 876543333
No 55
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=30.64 E-value=62 Score=22.84 Aligned_cols=62 Identities=13% Similarity=0.230 Sum_probs=35.7
Q ss_pred CCcHHHHHHHHhhHHHHhhhhHHhhhhhhheeeeee---------eccccccCchhHHHHHHHHHHHhhhh
Q 028026 110 VIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLK---------VVLKIDVPSWLPVIVSFIFFGAALLG 171 (215)
Q Consensus 110 aIPevVs~RMlrRia~f~GiP~~lG~~~F~~~Y~L~---------~~~~~dvP~wv~~lvS~~~FGlGlLG 171 (215)
.=+..+...++...++.+.+..++|+.....++.+. ....+.++.+..+.+.++++++.++.
T Consensus 38 ~s~~~i~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 108 (121)
T PF02687_consen 38 ASKRQIRKMFLYEALLIALIGILIGILLGILLIIFLINFLSKFFGDSFPFTISPWSFLIVFIIILLISIIA 108 (121)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeCHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777777777765444333332 33345566666666655555555444
No 56
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=30.63 E-value=59 Score=27.96 Aligned_cols=86 Identities=14% Similarity=0.163 Sum_probs=41.5
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhcc---ccccCCCCCCCcc
Q 028026 114 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGI---VSSSWDPLREGSL 189 (215)
Q Consensus 114 vVs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGISYGi---LSASWDp~reGSl 189 (215)
.++||.=||-.+..+. -.+++..++.+..+.. .+.+..+..+++..+++|+|.-.+.... +..-+++++.|..
T Consensus 73 ~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 149 (399)
T PRK05122 73 RYADTLGPKKAVVFGLCGCALSGLLYLLAGLLA---AWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRV 149 (399)
T ss_pred hHHhccCCcchHHHHHHHHHHHHHHHHHhhhhh---ccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccc
Confidence 3567776666555554 3333322222222111 1122233344444455555443332222 2345677788999
Q ss_pred ccHHHhhhchHHH
Q 028026 190 LGWNEAQRNWPVF 202 (215)
Q Consensus 190 LG~eE~k~Nw~~m 202 (215)
.|+...-.+.+-+
T Consensus 150 ~~~~~~~~~~g~~ 162 (399)
T PRK05122 150 ISWNGIATYGALA 162 (399)
T ss_pred hhhhhhhhhHHHH
Confidence 8887766655543
No 57
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=30.47 E-value=20 Score=34.24 Aligned_cols=11 Identities=55% Similarity=1.120 Sum_probs=8.6
Q ss_pred cccCCCCCccc
Q 028026 13 KVDCSHGHSKS 23 (215)
Q Consensus 13 ~~~~~~~~~~~ 23 (215)
-||||||.|..
T Consensus 263 mVDcSH~NS~K 273 (356)
T PRK12822 263 IIDCSHGNSQK 273 (356)
T ss_pred EEECCCccCCC
Confidence 37999998753
No 58
>COG4967 PilV Tfp pilus assembly protein PilV [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.21 E-value=37 Score=29.10 Aligned_cols=43 Identities=12% Similarity=0.275 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhhhhhcc-------ccccCCCCCCCccccHHHhhhchHHHHHHHhhCCC
Q 028026 159 IVSFIFFGAALLGVSYGI-------VSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGG 211 (215)
Q Consensus 159 lvS~~~FGlGlLGISYGi-------LSASWDp~reGSlLG~eE~k~Nw~~mw~s~r~~~~ 211 (215)
+++++++++||||++==. .+|+|+- ++..=|..+|+.++..+.
T Consensus 18 LIA~lll~vglLgla~lQ~~s~~~t~~a~~r~----------~~~~l~~~~~e~m~an~~ 67 (162)
T COG4967 18 LIAMLLLSVGLLGLAGLQARTLRNTQEARQRS----------IAAQLWQNLLERMRANRS 67 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHcCCC
Confidence 788899999999976322 3455542 233346667777766543
No 59
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=29.91 E-value=47 Score=23.04 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=14.7
Q ss_pred ccCchhHHHHHHHHHHHhhhhhh
Q 028026 151 DVPSWLPVIVSFIFFGAALLGVS 173 (215)
Q Consensus 151 dvP~wv~~lvS~~~FGlGlLGIS 173 (215)
.||.|++..+. ++..++++||-
T Consensus 7 RIPLWlVgtv~-G~~vi~lvglF 28 (40)
T PF01788_consen 7 RIPLWLVGTVA-GIAVIGLVGLF 28 (40)
T ss_dssp SS-HHHHHHHH-HHHHHHHHHHH
T ss_pred cccchHHHHHH-HHHHHHHHHHh
Confidence 68999865444 46778888873
No 60
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=28.39 E-value=34 Score=24.29 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhhhhhcccc
Q 028026 157 PVIVSFIFFGAALLGVSYGIVS 178 (215)
Q Consensus 157 ~~lvS~~~FGlGlLGISYGiLS 178 (215)
.+++-.+||.+|+||++-=.+|
T Consensus 3 ~~~iV~i~iv~~lLg~~I~~~~ 24 (50)
T PF12606_consen 3 AFLIVSIFIVMGLLGLSICTTL 24 (50)
T ss_pred ehHHHHHHHHHHHHHHHHHHHh
Confidence 3455567777899999854443
No 61
>COG3090 DctM TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]
Probab=28.28 E-value=79 Score=26.45 Aligned_cols=78 Identities=23% Similarity=0.382 Sum_probs=52.2
Q ss_pred HHHHHhhHHHHhhhhHHhhhhhhheeeeeeecccc-ccCchhHHHHHHHHHHHhhhhhhhccccccCCCCCCCccccHHH
Q 028026 116 TNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKI-DVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNE 194 (215)
Q Consensus 116 s~RMlrRia~f~GiP~~lG~~~F~~~Y~L~~~~~~-dvP~wv~~lvS~~~FGlGlLGISYGiLSASWDp~reGSlLG~eE 194 (215)
..+-+.|+.-.++.-.+.+|...+ ++=+..|..+ +-+.|.==+.-++|-.+..||++||+ |++.=+|.+-
T Consensus 8 ~~~~~~~~l~~v~~~ll~~m~~iv-~~~V~~Ry~~~~~~~WseElar~lfvwl~flGa~~~~--------r~~~Hi~vd~ 78 (177)
T COG3090 8 LGKAIDRLLEAVAAALLAAMVLIV-FLQVFTRYVFNSPISWSEELARLLFVWLIFLGAAYGV--------REGGHIGVDV 78 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHh--------ccCCeeeehH
Confidence 344456677777776666665444 3333444444 66678877888888899999999997 5667777776
Q ss_pred hhhchHHH
Q 028026 195 AQRNWPVF 202 (215)
Q Consensus 195 ~k~Nw~~m 202 (215)
+..=+++-
T Consensus 79 l~~~lp~~ 86 (177)
T COG3090 79 LVNLLPPR 86 (177)
T ss_pred HHHhCCHH
Confidence 66544443
No 62
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=27.74 E-value=41 Score=28.90 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=16.4
Q ss_pred HHhhhhHHhhhhhhheeeeeeecc
Q 028026 125 FTVGIPLLVGLLFFPFFYYLKVVL 148 (215)
Q Consensus 125 ~f~GiP~~lG~~~F~~~Y~L~~~~ 148 (215)
+=+|+|++||+++++++|.++.+.
T Consensus 56 VGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 56 VGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred ecccHHHHHHHHHhheeEEEeccc
Confidence 334559999988888666665554
No 63
>PRK10591 hypothetical protein; Provisional
Probab=27.59 E-value=37 Score=27.07 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=26.6
Q ss_pred HHhhhhhhheeeeeeeccccccCchh---HHHHHHHHHHHhhh
Q 028026 131 LLVGLLFFPFFYYLKVVLKIDVPSWL---PVIVSFIFFGAALL 170 (215)
Q Consensus 131 ~~lG~~~F~~~Y~L~~~~~~dvP~wv---~~lvS~~~FGlGlL 170 (215)
=++||.++++.|+.. ++.+.+|.|. ...+.++|.|+|+.
T Consensus 15 E~lGi~LLv~a~Lsi-ndyl~lP~~l~~~~aai~mif~Gi~lm 56 (92)
T PRK10591 15 EVLGMLLLVVAYLSL-NDYLSLPEPLSTPTAAILMIFLGVLLM 56 (92)
T ss_pred HHHHHHHHHHHHHHH-cccccCCccccCchHHHHHHHHHHHHh
Confidence 357888888887654 4466788765 35566777777664
No 64
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=27.14 E-value=84 Score=31.30 Aligned_cols=24 Identities=29% Similarity=0.539 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHhhhhhhhcccccc
Q 028026 154 SWLPVIVSFIFFGAALLGVSYGIVSSS 180 (215)
Q Consensus 154 ~wv~~lvS~~~FGlGlLGISYGiLSAS 180 (215)
.|++.+.+++|+ +.||.||+.+..
T Consensus 304 ~~iipii~~~Fl---i~givyG~~~g~ 327 (513)
T TIGR00819 304 KGIVPFIFLFFA---LPGIAYGIATRS 327 (513)
T ss_pred HhHHHHHHHHHH---HHHHHHHhhcCc
Confidence 466666666665 678889998764
No 65
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=26.92 E-value=32 Score=31.12 Aligned_cols=42 Identities=33% Similarity=0.447 Sum_probs=23.1
Q ss_pred hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhh
Q 028026 130 PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGV 172 (215)
Q Consensus 130 P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGI 172 (215)
|-+|.+++..+.||+..+..+. |.++.++.-.+.+.++++||
T Consensus 222 P~lLpl~~~~~~y~ll~kk~~~-~~~~i~~~~vi~iv~~~~Gi 263 (264)
T PF03613_consen 222 PGLLPLLLTLLVYWLLKKKKVS-PTKLILIIIVIGIVGAALGI 263 (264)
T ss_pred hhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHhcc
Confidence 6666666655666665555433 34555544445555555554
No 66
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=26.61 E-value=36 Score=27.87 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=40.7
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhh---hhhhhccccccCCCCCCCcc
Q 028026 114 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAAL---LGVSYGIVSSSWDPLREGSL 189 (215)
Q Consensus 114 vVs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGl---LGISYGiLSASWDp~reGSl 189 (215)
.++||.=||..+..|. -.+++...+.+. +++..+++..++.|++. ....+.+++.-.++++.|..
T Consensus 52 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 120 (379)
T TIGR00881 52 SVSDRSNPRVFLPIGLILCAIVNLFFGFS-----------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTW 120 (379)
T ss_pred HHHHhhCCeehhHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheee
Confidence 4577776665555554 444444433321 13334444444443322 12223344444455567888
Q ss_pred ccHHHhhhchHHHHH
Q 028026 190 LGWNEAQRNWPVFWQ 204 (215)
Q Consensus 190 LG~eE~k~Nw~~mw~ 204 (215)
.|+-..-.+++-+.-
T Consensus 121 ~~~~~~~~~~g~~~~ 135 (379)
T TIGR00881 121 VSFWNCSHNVGGGLL 135 (379)
T ss_pred EeehhccchhHHHHH
Confidence 888777776665443
No 67
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=26.58 E-value=3.7e+02 Score=25.45 Aligned_cols=55 Identities=22% Similarity=0.374 Sum_probs=34.0
Q ss_pred HHHHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHh-hhh
Q 028026 117 NRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAA-LLG 171 (215)
Q Consensus 117 ~RMlrRia~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlG-lLG 171 (215)
-|=++-+++.+-.=.+.-+.+||.+-.-........-.|....+.+++|-+| ++|
T Consensus 268 ~kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vG 323 (437)
T TIGR00939 268 FTKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLG 323 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 3445567888888888889999988766555433344553434444555443 444
No 68
>TIGR00893 2A0114 d-galactonate transporter.
Probab=26.39 E-value=43 Score=27.25 Aligned_cols=80 Identities=15% Similarity=0.060 Sum_probs=40.7
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhh---hhccccccCCCCCCCcc
Q 028026 114 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGV---SYGIVSSSWDPLREGSL 189 (215)
Q Consensus 114 vVs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGI---SYGiLSASWDp~reGSl 189 (215)
.++||.-||..+..+. -.+++...+.+. +++..+++..+++|+|.-++ .+.+++.-.++++.|..
T Consensus 51 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 119 (399)
T TIGR00893 51 WLLDRFGARKTLAVFIVIWGVFTGLQAFA-----------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA 119 (399)
T ss_pred HHHHhcCcceeeHHHHHHHHHHHHHHHHH-----------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHH
Confidence 3567776665554443 333333322211 14445555555655553221 22233333445567888
Q ss_pred ccHHHhhhchHHHHH
Q 028026 190 LGWNEAQRNWPVFWQ 204 (215)
Q Consensus 190 LG~eE~k~Nw~~mw~ 204 (215)
.|+-..-.+++-+.-
T Consensus 120 ~~~~~~~~~~g~~~~ 134 (399)
T TIGR00893 120 VSIFNSAQGLGGIIG 134 (399)
T ss_pred HHHHHHhchHHHHHH
Confidence 888877777765543
No 69
>PF08219 TOM13: Outer membrane protein TOM13; InterPro: IPR013262 The TOM13 family of proteins are mitochondrial outer membrane proteins that mediate the assembly of beta-barrel proteins [].; GO: 0005741 mitochondrial outer membrane
Probab=26.31 E-value=87 Score=24.38 Aligned_cols=34 Identities=9% Similarity=0.218 Sum_probs=26.3
Q ss_pred ccccCCCcHHHHHHHHhhHHHHhhhhHHhhhhhh
Q 028026 105 EAEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFF 138 (215)
Q Consensus 105 ~~~~~aIPevVs~RMlrRia~f~GiP~~lG~~~F 138 (215)
.++....+..-..+++|..++=..+|..=||.+-
T Consensus 18 s~~~~~~~~~~~~~~~~~~aINL~LPFiNG~MLG 51 (77)
T PF08219_consen 18 SPSSSSSSFITIWSILRSAAINLVLPFINGMMLG 51 (77)
T ss_pred CCCcCCcchhHHHHHHHHhhhhhhhhhhhhhhHh
Confidence 3445566666788999999999999998887753
No 70
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=26.15 E-value=74 Score=31.70 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=24.9
Q ss_pred hhhccccccCCCCCCCccccHHHhhhchHHHHHH
Q 028026 172 VSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQS 205 (215)
Q Consensus 172 ISYGiLSASWDp~reGSlLG~eE~k~Nw~~mw~s 205 (215)
..+.+++--+.+++.|...|+-.+-.+++-+.-.
T Consensus 123 ~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~ 156 (1146)
T PRK08633 123 AKYGIIPELVGKENLSRANGLLEAFTIVAILAGT 156 (1146)
T ss_pred HHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHH
Confidence 3345666667778889999999988888766543
No 71
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=26.00 E-value=67 Score=25.73 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=17.5
Q ss_pred HHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHH
Q 028026 125 FTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSF 162 (215)
Q Consensus 125 ~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~ 162 (215)
+..|+-+++-+++|--. .++....+-...|-.|++..
T Consensus 6 iiigi~tFliIG~fHpi-VIk~EYyfg~~~W~~FL~~G 42 (94)
T PF14898_consen 6 IIIGIATFLIIGLFHPI-VIKGEYYFGTRIWPIFLLAG 42 (94)
T ss_pred HHHHHHHHHHHHccCeE-EEEEEEecCCCcHHHHHHHH
Confidence 44455566666655422 22223333445566665543
No 72
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=25.55 E-value=66 Score=28.94 Aligned_cols=16 Identities=19% Similarity=0.332 Sum_probs=8.7
Q ss_pred HHHHhhhhHHhhhhhh
Q 028026 123 IGFTVGIPLLVGLLFF 138 (215)
Q Consensus 123 ia~f~GiP~~lG~~~F 138 (215)
+.++..+.++++++++
T Consensus 400 ~~~~~~i~~i~~~~~~ 415 (511)
T PF09972_consen 400 LIILGIILLILGFILL 415 (511)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555544
No 73
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=25.49 E-value=1e+02 Score=28.77 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=18.5
Q ss_pred HHhhhhHHhhhhhhheeeeeeeccccccCchhHHHH
Q 028026 125 FTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIV 160 (215)
Q Consensus 125 ~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lv 160 (215)
..+++.+++|.. ++.++.. ..+.+|.++.-..
T Consensus 224 ~~i~i~~~~G~~---i~~~l~~-~~~~lP~f~~ami 255 (368)
T PF03616_consen 224 ALILIAIGLGYI---ISALLKK-IGLTLPLFVGAMI 255 (368)
T ss_pred HHHHHHHHHHHH---HHHHHHH-cCcCCchHHHHHH
Confidence 356666666654 3334444 5678888755443
No 74
>PRK05415 hypothetical protein; Provisional
Probab=24.76 E-value=87 Score=29.69 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=13.7
Q ss_pred cccCchhHHHHHHHHHHHhhhhhh
Q 028026 150 IDVPSWLPVIVSFIFFGAALLGVS 173 (215)
Q Consensus 150 ~dvP~wv~~lvS~~~FGlGlLGIS 173 (215)
+.--+|+.++.+.++..+.++|+.
T Consensus 93 ~~~~~wlg~~~~~~~~~~~~~~~~ 116 (341)
T PRK05415 93 FQRSDWLGLGAAVVGALIVLAGLG 116 (341)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHH
Confidence 444567777666555555555443
No 75
>KOG2866 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.72 E-value=71 Score=30.69 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=22.8
Q ss_pred cCCccccccchhhhccCCCCCCCCccccc
Q 028026 54 HLSNTTANSTLYATLNSPRGFGPPPKKTK 82 (215)
Q Consensus 54 ~~~~~~~~~~~~a~~~~p~pFep~~kk~K 82 (215)
.+++....+..|-++-+|.-|+-.+++.|
T Consensus 181 ~~~~~~~~s~~~~~mvgp~~~e~k~r~~~ 209 (349)
T KOG2866|consen 181 LVPSTVNVSCGCDFMVGPLSVEKKQRKPK 209 (349)
T ss_pred cccceeccccccceeecceeEeecccccc
Confidence 44555777888999999999998887753
No 76
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=24.62 E-value=36 Score=27.08 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=18.4
Q ss_pred HHhhhhhhheeeeeeeccccccCchhHH
Q 028026 131 LLVGLLFFPFFYYLKVVLKIDVPSWLPV 158 (215)
Q Consensus 131 ~~lG~~~F~~~Y~L~~~~~~dvP~wv~~ 158 (215)
++.|+++-++|++++.+ ...|+-+.+
T Consensus 7 L~aG~lvG~iy~ll~v~--sPAPP~iAl 32 (90)
T PF07235_consen 7 LGAGLLVGVIYSLLKVP--SPAPPVIAL 32 (90)
T ss_pred hhhhhHHHHHHHHhcCC--CCCCcHhHH
Confidence 56778888888888876 556666543
No 77
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=24.61 E-value=83 Score=28.13 Aligned_cols=9 Identities=0% Similarity=-0.001 Sum_probs=4.2
Q ss_pred cCchhHHHH
Q 028026 152 VPSWLPVIV 160 (215)
Q Consensus 152 vP~wv~~lv 160 (215)
++-|..+++
T Consensus 265 ~~g~~~~~~ 273 (325)
T PRK10714 265 AEGVFMLFA 273 (325)
T ss_pred CCCcHHHHH
Confidence 445654433
No 78
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=24.58 E-value=87 Score=24.24 Aligned_cols=15 Identities=7% Similarity=0.518 Sum_probs=8.8
Q ss_pred hhhhhheeeeeeecc
Q 028026 134 GLLFFPFFYYLKVVL 148 (215)
Q Consensus 134 G~~~F~~~Y~L~~~~ 148 (215)
-+.+++++||+..|.
T Consensus 75 lVily~IyYFVILRe 89 (101)
T PF06024_consen 75 LVILYAIYYFVILRE 89 (101)
T ss_pred HHHHhhheEEEEEec
Confidence 344566677776553
No 79
>PRK12382 putative transporter; Provisional
Probab=24.56 E-value=1.5e+02 Score=25.43 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=43.1
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhc---cccccCCCCCCCcc
Q 028026 114 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYG---IVSSSWDPLREGSL 189 (215)
Q Consensus 114 vVs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGISYG---iLSASWDp~reGSl 189 (215)
..+||+=||-.+.+|. -.+++...+.+..++.. ...+++..+++.-++.|+|...+.-+ ......++++.|..
T Consensus 73 ~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a 149 (392)
T PRK12382 73 RLADQYGAKRSALQGMLACGLAGLAYLLAAILPV---SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKV 149 (392)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHhhhcccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchh
Confidence 4578887777666654 33333332222222111 12233444444445555544322211 22334567788999
Q ss_pred ccHHHhhhchHHH
Q 028026 190 LGWNEAQRNWPVF 202 (215)
Q Consensus 190 LG~eE~k~Nw~~m 202 (215)
.|+-..-.|.+.+
T Consensus 150 ~~~~~~~~~~g~~ 162 (392)
T PRK12382 150 MSWNGMAMYGALA 162 (392)
T ss_pred hhHHHHHHHHHHH
Confidence 9987766665544
No 80
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=24.53 E-value=86 Score=24.71 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=10.5
Q ss_pred CCccccHHHhhhchHHHH
Q 028026 186 EGSLLGWNEAQRNWPVFW 203 (215)
Q Consensus 186 eGSlLG~eE~k~Nw~~mw 203 (215)
..+.+-+..+..|..-.+
T Consensus 113 ~~~~~~~~~~~~N~~l~~ 130 (182)
T PF00689_consen 113 RRSVFRFRGIFSNKWLLI 130 (182)
T ss_dssp SSTCTT-STGGGSHHHHH
T ss_pred cccceecccccccchHHH
Confidence 356666667778865443
No 81
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=24.45 E-value=1.2e+02 Score=29.58 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=7.7
Q ss_pred HHHHhhhhhhhcccc
Q 028026 164 FFGAALLGVSYGIVS 178 (215)
Q Consensus 164 ~FGlGlLGISYGiLS 178 (215)
..+++-||..-++++
T Consensus 179 AvaLARLG~~vafIG 193 (496)
T PLN02543 179 AISHVRLGGRAAFMG 193 (496)
T ss_pred HHHHHHCCCCEEEEE
Confidence 344555665555443
No 82
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=24.40 E-value=1.9e+02 Score=23.50 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhh---hhhhhccccccCCCCCCCccccHHHhhhchHHHHHH
Q 028026 157 PVIVSFIFFGAAL---LGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQS 205 (215)
Q Consensus 157 ~~lvS~~~FGlGl---LGISYGiLSASWDp~reGSlLG~eE~k~Nw~~mw~s 205 (215)
.+++..++.|+|. ....+.+++...++++.+..+|+-..-.+++.+.-.
T Consensus 87 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 138 (352)
T PF07690_consen 87 LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGP 138 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhccc
Confidence 4555555555543 334455566666666889999998888877766543
No 83
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.28 E-value=63 Score=26.33 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=15.2
Q ss_pred HHHHHhhHHHHhhhh-HHhhhhhhhee
Q 028026 116 TNRMISRIGFTVGIP-LLVGLLFFPFF 141 (215)
Q Consensus 116 s~RMlrRia~f~GiP-~~lG~~~F~~~ 141 (215)
..|.+.=+++..|+- .+.|++.++++
T Consensus 3 ~~~i~~i~~iilgilli~~gI~~Lv~~ 29 (191)
T PF04156_consen 3 KQRIISIILIILGILLIASGIAALVLF 29 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777775 44455544443
No 84
>COG3716 ManZ Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
Probab=24.14 E-value=45 Score=30.94 Aligned_cols=42 Identities=33% Similarity=0.615 Sum_probs=25.8
Q ss_pred hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhccc
Q 028026 130 PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIV 177 (215)
Q Consensus 130 P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGISYGiL 177 (215)
|-++.+++..+.|||..+ .+ =|.|+. +++|.+|++|---|+|
T Consensus 228 Pgllpl~~t~~~~wLl~K-kv-~p~~iI----~~~~vigIvg~~lGil 269 (269)
T COG3716 228 PGLLPLLLTLLMYWLLRK-KV-NPTWLI----LGTFVLGIVGSALGIL 269 (269)
T ss_pred hhHHHHHHHHHHHHHHcc-CC-chHHHH----HHHHHHHHHHHHhccC
Confidence 667777755555655543 22 244443 4677888888777765
No 85
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=24.08 E-value=1.2e+02 Score=30.73 Aligned_cols=16 Identities=6% Similarity=0.185 Sum_probs=8.6
Q ss_pred hhhhhhc-cccccCCCC
Q 028026 169 LLGVSYG-IVSSSWDPL 184 (215)
Q Consensus 169 lLGISYG-iLSASWDp~ 184 (215)
-+++.|. |+=.-||.+
T Consensus 416 ~V~l~~~QVimrgRd~~ 432 (548)
T PF02459_consen 416 YVELNLAQVIMRGRDEN 432 (548)
T ss_pred hhhhheeeEEEEeecCC
Confidence 3556654 444557763
No 86
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=24.05 E-value=1.2e+02 Score=26.00 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=40.4
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhh---hhhhhccccccCCCCCCCcc
Q 028026 114 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAAL---LGVSYGIVSSSWDPLREGSL 189 (215)
Q Consensus 114 vVs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGl---LGISYGiLSASWDp~reGSl 189 (215)
.++||.=||..+..|. .++++...+... +++..+++..++.|++. ..+.+.+++..-++++.|..
T Consensus 60 ~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~ 128 (392)
T PRK10473 60 KIADRSGRKPVAIPGAALFIIASLLCSLA-----------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKV 128 (392)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHH
Confidence 4567777776655554 444444433211 22333333334444332 22455566555667777888
Q ss_pred ccHHHhhhchHH
Q 028026 190 LGWNEAQRNWPV 201 (215)
Q Consensus 190 LG~eE~k~Nw~~ 201 (215)
+|+-..-.|++.
T Consensus 129 ~~~~~~~~~i~~ 140 (392)
T PRK10473 129 LSLLNGITCIIP 140 (392)
T ss_pred HHHHHHHHHHHH
Confidence 887766555543
No 87
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=23.98 E-value=1.6e+02 Score=26.00 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=33.1
Q ss_pred cccCchhHHHHHHHHHHHhhhhhhhccccccCCCCCCCccccHHHhhhchHHH
Q 028026 150 IDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVF 202 (215)
Q Consensus 150 ~dvP~wv~~lvS~~~FGlGlLGISYGiLSASWDp~reGSlLG~eE~k~Nw~~m 202 (215)
++.|.|..+++. +++|+.++-|.=.++|+-|-... .+.++..-++|+
T Consensus 41 ~~~~~~~ai~~g-lvwgl~I~~lDR~ivss~~~~~~-----~~~~~~~~~~R~ 87 (301)
T PF14362_consen 41 FGGPVWAAIPFG-LVWGLVIFNLDRFIVSSIRKSDG-----SRKRLLQALPRL 87 (301)
T ss_pred hccchHHHHHHH-HHHHHHHHHHHHHHHhccccccc-----hHHHHHHHHHHH
Confidence 455556666666 88899999999999999887642 455555555553
No 88
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=23.87 E-value=15 Score=31.07 Aligned_cols=52 Identities=12% Similarity=0.186 Sum_probs=24.5
Q ss_pred HHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhccccc
Q 028026 124 GFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSS 179 (215)
Q Consensus 124 a~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGISYGiLSA 179 (215)
++.+|+-.++|-.+-.+-|++.. . .. .-+...+.+.++.+.++|.-.+.+|.
T Consensus 135 al~~~~sf~lg~liPllp~~~~~-~-~~--~a~~~s~~~~~~~L~~~G~~~a~~~~ 186 (213)
T PF01988_consen 135 ALATFLSFILGGLIPLLPYFFLP-S-VS--EAFIASIAVTILALFILGYFKARISG 186 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-h-HH--HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566655555555555565554 1 11 11222222344445566665555554
No 89
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=23.82 E-value=26 Score=28.22 Aligned_cols=22 Identities=23% Similarity=0.461 Sum_probs=16.7
Q ss_pred ccccccCchhHHHHHHHHHHHh
Q 028026 147 VLKIDVPSWLPVIVSFIFFGAA 168 (215)
Q Consensus 147 ~~~~dvP~wv~~lvS~~~FGlG 168 (215)
...+.+|.|+.|+.-..+|..|
T Consensus 15 a~~~~l~~W~~Figwa~yfa~G 36 (144)
T PF06496_consen 15 APALGLPGWAGFIGWASYFAAG 36 (144)
T ss_pred HHHcCchHHHHHHHHHHHHHcC
Confidence 3456788999999888887653
No 90
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=23.70 E-value=1.7e+02 Score=24.46 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=40.2
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccC-chhHHHHHHHHHHHhh--hhhhhccccccCCCCCCCcc
Q 028026 114 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVP-SWLPVIVSFIFFGAAL--LGVSYGIVSSSWDPLREGSL 189 (215)
Q Consensus 114 vVs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP-~wv~~lvS~~~FGlGl--LGISYGiLSASWDp~reGSl 189 (215)
.++||+=||-.+..+. -++++...+... + ++..+++..++.|++- ....+..++.-.++++.|..
T Consensus 59 ~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~ 127 (366)
T TIGR00886 59 FLVDKFGPRYTTTLSLLLLAIPCLWAGLA-----------VQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTA 127 (366)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHH
Confidence 4677887765554443 444444332211 1 3444445555554432 22233334333445567888
Q ss_pred ccHHHhhhchHHHH
Q 028026 190 LGWNEAQRNWPVFW 203 (215)
Q Consensus 190 LG~eE~k~Nw~~mw 203 (215)
.|+-..-.|.+.+.
T Consensus 128 ~~~~~~~~~~g~~~ 141 (366)
T TIGR00886 128 LGLAAGWGNMGGGV 141 (366)
T ss_pred HHHHHHHhHHHHHH
Confidence 88877655655543
No 91
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.62 E-value=58 Score=25.33 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhhhhhccccccCCCCCCCccccH
Q 028026 157 PVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGW 192 (215)
Q Consensus 157 ~~lvS~~~FGlGlLGISYGiLSASWDp~reGSlLG~ 192 (215)
+++.++++|.+-++|.|.|+.-..=- -.||-=|+
T Consensus 3 t~lltFg~Fllvi~gMsiG~I~krk~--I~GSCGGi 36 (77)
T COG2991 3 TFLLTFGIFLLVIAGMSIGYIFKRKS--IKGSCGGI 36 (77)
T ss_pred cHHHHHHHHHHHHHHHhHhhheeccc--cccccccH
Confidence 57889999999999999998754322 24665444
No 92
>COG0577 SalY ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=23.49 E-value=1e+02 Score=25.52 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=37.1
Q ss_pred cccCCCcHHHHHHHHhhHHHHhhhhHHhhhhhhheeeeeee-----------ccccccCchhHHHHHHHHHHHhhhhh
Q 028026 106 AEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKV-----------VLKIDVPSWLPVIVSFIFFGAALLGV 172 (215)
Q Consensus 106 ~~~~aIPevVs~RMlrRia~f~GiP~~lG~~~F~~~Y~L~~-----------~~~~dvP~wv~~lvS~~~FGlGlLGI 172 (215)
++.++-+..+...++...++.+.+-.++|+.++.++.++.. .....++.....+..++.+.+++++-
T Consensus 323 ka~G~~~~~i~~~~~~e~~~~~~~g~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 400 (419)
T COG0577 323 KALGATRREILLQFLLEALILGLIGGLLGILLGLGLSLLLALLLIASLFFLLALPILLSPLLILLALIVALLVGVIAG 400 (419)
T ss_pred HhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777666666666666665433332221 22445555555555555555555554
No 93
>PRK03633 putative MFS family transporter protein; Provisional
Probab=23.26 E-value=2e+02 Score=24.82 Aligned_cols=80 Identities=10% Similarity=-0.022 Sum_probs=44.3
Q ss_pred HHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhh---hccccccCCCCCCCccc
Q 028026 115 VTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVS---YGIVSSSWDPLREGSLL 190 (215)
Q Consensus 115 Vs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGIS---YGiLSASWDp~reGSlL 190 (215)
.+||.-||..+..|+ -.++|...+.+ .+++..+++..++.|+|.-++. ..++...+.+++.|..+
T Consensus 64 l~dr~g~k~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (381)
T PRK03633 64 VIKRIGFNRSYYLASLIFAAGCAGLGL-----------MVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLL 132 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 567776655554443 33333332221 2345555566666666543321 23455667777788888
Q ss_pred cHHHhhhchHHHHHH
Q 028026 191 GWNEAQRNWPVFWQS 205 (215)
Q Consensus 191 G~eE~k~Nw~~mw~s 205 (215)
|+-.+--|++-..-.
T Consensus 133 ~~~~~~~~~g~~~g~ 147 (381)
T PRK03633 133 AAYMMVYYLGTVLGQ 147 (381)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887777776655433
No 94
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=23.10 E-value=2.3e+02 Score=24.91 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=15.1
Q ss_pred ccccCchhHHHHHHHHHHHh
Q 028026 149 KIDVPSWLPVIVSFIFFGAA 168 (215)
Q Consensus 149 ~~dvP~wv~~lvS~~~FGlG 168 (215)
++|||..-+.++-...|..+
T Consensus 133 IfDvPVfwPILvvYfi~l~f 152 (180)
T COG5249 133 IFDVPVFWPILVVYFIFLVF 152 (180)
T ss_pred hhcchhhhHHHHHHHHHHHH
Confidence 57999999988877666443
No 95
>TIGR00901 2A0125 AmpG-related permease.
Probab=22.50 E-value=1.6e+02 Score=24.94 Aligned_cols=30 Identities=7% Similarity=-0.105 Sum_probs=20.5
Q ss_pred hhhhhhccccccCCCCCCCccccHHHhhhc
Q 028026 169 LLGVSYGIVSSSWDPLREGSLLGWNEAQRN 198 (215)
Q Consensus 169 lLGISYGiLSASWDp~reGSlLG~eE~k~N 198 (215)
..+.....++-.=+++..|+..|+-..-.|
T Consensus 326 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 326 GTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 334445556666688889999998766554
No 96
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=22.46 E-value=1.6e+02 Score=23.69 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=39.7
Q ss_pred HHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhh--hhhhhccccccCCC-CCCCccc
Q 028026 115 VTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAAL--LGVSYGIVSSSWDP-LREGSLL 190 (215)
Q Consensus 115 Vs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGl--LGISYGiLSASWDp-~reGSlL 190 (215)
++||.=||..+..+. -.+++...+... +++..+++..++.|++. ....+..+-+.|-+ ++.|...
T Consensus 57 ~~d~~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (352)
T cd06174 57 LSDRFGRRRVLLLGLLLFALGSLLLAFA-----------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRAL 125 (352)
T ss_pred HHHHhCCchhhHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhh
Confidence 567776665544443 334444333222 34444554444444322 22222233334444 4778999
Q ss_pred cHHHhhhchHHHH
Q 028026 191 GWNEAQRNWPVFW 203 (215)
Q Consensus 191 G~eE~k~Nw~~mw 203 (215)
|+...-.+++.+.
T Consensus 126 ~~~~~~~~~g~~~ 138 (352)
T cd06174 126 GLFSAGFGLGALL 138 (352)
T ss_pred hHHHHHHHHHHHH
Confidence 9888777666543
No 97
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=22.22 E-value=1.7e+02 Score=20.00 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=18.2
Q ss_pred hhccccccCCCCCCCccccHHHhhhchHHH
Q 028026 173 SYGIVSSSWDPLREGSLLGWNEAQRNWPVF 202 (215)
Q Consensus 173 SYGiLSASWDp~reGSlLG~eE~k~Nw~~m 202 (215)
.+..++..-++++.|...|+-..-.+++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 101 (141)
T TIGR00880 72 GAALIADIYPPEERGVALGLMSAGIALGPL 101 (141)
T ss_pred HHHHHHHHCChhhhhHHHHHHHHhHHHHHH
Confidence 334444455666678888877766655543
No 98
>PF10823 DUF2568: Protein of unknown function (DUF2568); InterPro: IPR021214 One member in this family is annotated as yrdB which is part of a four gene operon however currently no function is known.
Probab=22.17 E-value=1.4e+02 Score=23.26 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=39.3
Q ss_pred HHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhh
Q 028026 119 MISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGV 172 (215)
Q Consensus 119 MlrRia~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGI 172 (215)
+.-|+++..++|.+.++. -..|..-+....+|...-+++-.+.|+++.+++
T Consensus 25 ~~~~~~l~i~~p~~~a~~---Wg~f~APka~~rl~~~~rl~le~~vF~~~~~al 75 (93)
T PF10823_consen 25 WWWKILLAIGLPLLAAVL---WGLFGAPKAPRRLPGPARLLLELAVFGLAAAAL 75 (93)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHcCCCCcccCccHHHHHHHHHHHHHHHHHH
Confidence 556888888889776654 344556667788999999999999999887764
No 99
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=21.95 E-value=2e+02 Score=24.30 Aligned_cols=84 Identities=11% Similarity=0.059 Sum_probs=43.6
Q ss_pred HHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhh---hhhccccccCCCCCCCccc
Q 028026 115 VTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLG---VSYGIVSSSWDPLREGSLL 190 (215)
Q Consensus 115 Vs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLG---ISYGiLSASWDp~reGSlL 190 (215)
.+||+=||..+..+. -.++|...+.+. . ....+..+++..++.|+|.-+ +.+.+++.-+++++.|...
T Consensus 94 l~d~~grr~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 165 (481)
T TIGR00879 94 LSDRFGRKKSLLIIALLFVIGAILMGLA---A-----FALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALT 165 (481)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHh---c-----cccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhh
Confidence 467777776555544 333343333211 0 011122344455555554322 2344455556667778888
Q ss_pred cHHHhhhchHHHHHHH
Q 028026 191 GWNEAQRNWPVFWQSL 206 (215)
Q Consensus 191 G~eE~k~Nw~~mw~s~ 206 (215)
|+-.+-.|++-+.-.+
T Consensus 166 ~~~~~~~~~G~~~~~~ 181 (481)
T TIGR00879 166 SLYQLAITFGILVAYG 181 (481)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8887777766655443
No 100
>TIGR00895 2A0115 benzoate transport.
Probab=21.94 E-value=2.1e+02 Score=23.74 Aligned_cols=80 Identities=14% Similarity=0.027 Sum_probs=38.7
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhh---hhhccccccCCCCCCCcc
Q 028026 114 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLG---VSYGIVSSSWDPLREGSL 189 (215)
Q Consensus 114 vVs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLG---ISYGiLSASWDp~reGSl 189 (215)
.++||+-||..+..|. -.+++...+.+ .+.+..+++..++.|++.-+ ..+..++.-.++++.|..
T Consensus 74 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 142 (398)
T TIGR00895 74 PLADRIGRKRVLLWSILLFSVFTLLCAL-----------ATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTA 142 (398)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH-----------ccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchh
Confidence 3567777776665554 33333332221 12333344444444443211 122222233344567888
Q ss_pred ccHHHhhhchHHHHH
Q 028026 190 LGWNEAQRNWPVFWQ 204 (215)
Q Consensus 190 LG~eE~k~Nw~~mw~ 204 (215)
.|+-.+-.+++.+.-
T Consensus 143 ~~~~~~~~~~g~~~~ 157 (398)
T TIGR00895 143 VGLMFCGYPIGAAVG 157 (398)
T ss_pred HhhHhhHHHHHHHHH
Confidence 888777766665443
No 101
>PF08941 USP8_interact: USP8 interacting; InterPro: IPR015036 This protein interacts with the UBP deubiquitinating enzyme USP8. ; GO: 0016881 acid-amino acid ligase activity, 0031386 protein tag, 0016567 protein ubiquitination; PDB: 2FZP_A 2GWF_B 2OGB_A.
Probab=21.81 E-value=59 Score=28.67 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=17.1
Q ss_pred CCcHHHHHHHHhhHHHHhhhhHH
Q 028026 110 VIPEIVTNRMISRIGFTVGIPLL 132 (215)
Q Consensus 110 aIPevVs~RMlrRia~f~GiP~~ 132 (215)
.-|+.|.+.|+||-+..+|-|+-
T Consensus 83 STPD~~Lq~~ir~~L~~sgCP~h 105 (179)
T PF08941_consen 83 STPDSVLQAMIRRSLSESGCPMH 105 (179)
T ss_dssp SS--HHHHHHHHHHHHHTT--CC
T ss_pred cCccHHHHHHHHHHHHhcCCCHH
Confidence 47999999999999999999863
No 102
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=21.66 E-value=25 Score=38.05 Aligned_cols=11 Identities=9% Similarity=0.274 Sum_probs=4.8
Q ss_pred hhHHHHhhhhH
Q 028026 121 SRIGFTVGIPL 131 (215)
Q Consensus 121 rRia~f~GiP~ 131 (215)
+|+..+...|.
T Consensus 904 ~~~~wvl~~Pi 914 (1096)
T TIGR00927 904 KQAIYLFLLPI 914 (1096)
T ss_pred ceeEeEEecch
Confidence 44444444443
No 103
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=21.62 E-value=1.5e+02 Score=25.69 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=5.6
Q ss_pred cccCCCCCcc
Q 028026 13 KVDCSHGHSK 22 (215)
Q Consensus 13 ~~~~~~~~~~ 22 (215)
..++.+||..
T Consensus 38 ~F~~~~gh~N 47 (248)
T PF07787_consen 38 NFDRPEGHQN 47 (248)
T ss_pred ccCcccccCC
Confidence 3455667754
No 104
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=21.54 E-value=1.3e+02 Score=25.08 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=22.1
Q ss_pred hhhhhhhccccccCCCCCCCccccHHHhhhchHHHH
Q 028026 168 ALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFW 203 (215)
Q Consensus 168 GlLGISYGiLSASWDp~reGSlLG~eE~k~Nw~~mw 203 (215)
+..++....++..=+++..|...|+...-.|++.+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~ 379 (405)
T TIGR00891 344 GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGAL 379 (405)
T ss_pred cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHH
Confidence 333444444544446667799999877766666543
No 105
>TIGR01539 portal_lambda phage portal protein, lambda family. This model represents one of several distantly related families of phage portal protein. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. It functions as a dodecamer of a single polypeptide of average mol. wt. of 40-90 KDa.
Probab=21.53 E-value=99 Score=29.59 Aligned_cols=51 Identities=24% Similarity=0.185 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHhhhhhhhccccccCCCCCCCc-cccHHHhhhchHHHHHH
Q 028026 155 WLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGS-LLGWNEAQRNWPVFWQS 205 (215)
Q Consensus 155 wv~~lvS~~~FGlGlLGISYGiLSASWDp~reGS-lLG~eE~k~Nw~~mw~s 205 (215)
+..|.-..+---++-|||+|..|+..+....=-| =.|..|+.+.+...++-
T Consensus 301 ~~~F~~~~lr~iAaglGi~Ye~lt~D~s~~nYSS~R~~l~e~~r~~~~~q~~ 352 (458)
T TIGR01539 301 FEAFEQAQLRAIAAGLGVSYEQLSRDYSGVNYSSIRQGLNESRERFMGLQKF 352 (458)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 6677666655444458999999999998642222 35888888877766653
No 106
>PF05136 Phage_portal_2: Phage portal protein, lambda family ; InterPro: IPR006429 This entry is represented by Bacteriophage lambda, GpB, portal protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences represent one of several distantly related families of phage portal protein. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. It functions as a dodecamer of a single polypeptide of average mol. wt. of 40-90 kDa. ; GO: 0003677 DNA binding, 0019028 viral capsid
Probab=21.51 E-value=76 Score=28.87 Aligned_cols=48 Identities=21% Similarity=0.217 Sum_probs=33.0
Q ss_pred cCchhHHHHHHHHHHHhhhhhhhccccccCCCC-CCCccccHHHhhhch
Q 028026 152 VPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPL-REGSLLGWNEAQRNW 199 (215)
Q Consensus 152 vP~wv~~lvS~~~FGlGlLGISYGiLSASWDp~-reGSlLG~eE~k~Nw 199 (215)
-+.+..|.-.++---++-+||+|-+||..+... =--+=.|..|+.+++
T Consensus 302 ~~~f~~F~~~~lr~iaaglGvpYe~ls~D~s~~nYSS~R~~~~e~~r~~ 350 (355)
T PF05136_consen 302 NSNFEEFVKAQLRAIAAGLGVPYEQLSGDFSQVNYSSARAGLLEFRRMF 350 (355)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCHHHHhcccccCCcHHHHHHHHHHHHHH
Confidence 346778888887777788899999999988862 112234555555444
No 107
>PRK03893 putative sialic acid transporter; Provisional
Probab=21.50 E-value=85 Score=27.89 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=43.3
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHh---hhhhhhccccccCCCCCCCcc
Q 028026 114 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAA---LLGVSYGIVSSSWDPLREGSL 189 (215)
Q Consensus 114 vVs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlG---lLGISYGiLSASWDp~reGSl 189 (215)
.++||+-||..+..+. -.++|...+.+. +++..+++..++.|++ .....+.++.-.|++++.|..
T Consensus 77 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 145 (496)
T PRK03893 77 AMGDRYGRRLAMVISIVLFSVGTLACGFA-----------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKA 145 (496)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 4567887776665554 334444333321 2233444444444443 234455667777777767777
Q ss_pred ccHHHhhhchHHHH
Q 028026 190 LGWNEAQRNWPVFW 203 (215)
Q Consensus 190 LG~eE~k~Nw~~mw 203 (215)
+|+-..-.|++.+.
T Consensus 146 ~~~~~~~~~~g~~~ 159 (496)
T PRK03893 146 SGFLISGFSIGAVV 159 (496)
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666665543
No 108
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=21.39 E-value=1.6e+02 Score=25.53 Aligned_cols=19 Identities=5% Similarity=-0.069 Sum_probs=13.0
Q ss_pred CCCCCccccHHHhhhchHH
Q 028026 183 PLREGSLLGWNEAQRNWPV 201 (215)
Q Consensus 183 p~reGSlLG~eE~k~Nw~~ 201 (215)
++..|...|.-.+-.+.+.
T Consensus 339 ~~~~g~~~~~~~~~~~~~~ 357 (406)
T PRK15402 339 DVSKGTVSAAMGMLSMLIF 357 (406)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 3567888888776665543
No 109
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=21.27 E-value=1.3e+02 Score=24.59 Aligned_cols=19 Identities=42% Similarity=0.438 Sum_probs=9.5
Q ss_pred CCCCCccccccCCCCCCCC
Q 028026 73 GFGPPPKKTKKAKKPKTDN 91 (215)
Q Consensus 73 pFep~~kk~Kk~kk~~~~~ 91 (215)
|=+++++++|++++.+.+.
T Consensus 96 p~~~~K~~kKk~~k~kk~k 114 (120)
T PF07771_consen 96 PTEKPKKKKKKPKKTKKPK 114 (120)
T ss_pred CCCCCcCCcCCCCcccCCc
Confidence 3355555555555544443
No 110
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=21.01 E-value=1.2e+02 Score=26.56 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=40.3
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhc---cccccCCCCCCCcc
Q 028026 114 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYG---IVSSSWDPLREGSL 189 (215)
Q Consensus 114 vVs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGISYG---iLSASWDp~reGSl 189 (215)
.++||.-||-.+..|. =.++++..+..+. ...+++..++...++.|+|.-++.+. .+...|++++.|..
T Consensus 70 ~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~ 142 (402)
T TIGR00897 70 VVAEIIGPLKTMMIGLLLWCVGHAAFIVFG-------LGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSA 142 (402)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHh-------ccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHH
Confidence 3466765554444443 3344433332110 11123444444444455554333322 12334677788888
Q ss_pred ccHHHhhhchHH
Q 028026 190 LGWNEAQRNWPV 201 (215)
Q Consensus 190 LG~eE~k~Nw~~ 201 (215)
.|+-..-.|++.
T Consensus 143 ~g~~~~~~~~g~ 154 (402)
T TIGR00897 143 VGWFWAVYSIGI 154 (402)
T ss_pred HHHHHHHHHHHH
Confidence 888777777664
No 111
>COG2733 Predicted membrane protein [Function unknown]
Probab=20.96 E-value=82 Score=30.97 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=32.2
Q ss_pred HHHHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHH
Q 028026 117 NRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSF 162 (215)
Q Consensus 117 ~RMlrRia~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~ 162 (215)
-+|+||+=+..+.-+++-.++|++.|++..+ .|+-++.++
T Consensus 4 l~~lrr~K~iA~~lL~i~~~~f~l~~~~~nn------~w~g~v~a~ 43 (415)
T COG2733 4 LNELRRAKVIATGLLLIAAGVFILCRFFENN------AWVGFVGAI 43 (415)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhccc------HHHHHHHHH
Confidence 3678888888888888888999999999877 677666554
No 112
>COG4078 Predicted membrane protein [Function unknown]
Probab=20.91 E-value=90 Score=28.14 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=27.5
Q ss_pred HHHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhh-hccccccCC
Q 028026 118 RMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVS-YGIVSSSWD 182 (215)
Q Consensus 118 RMlrRia~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGIS-YGiLSASWD 182 (215)
|+=|-+++-||+.++..|.+.-+ + .+.+| ++|+||+ .|+.||-=|
T Consensus 69 kIrr~lAiVcglAtaGam~TgDl---------F----------nftLF-lsL~GI~NiGivsaV~~ 114 (221)
T COG4078 69 KIRRALAIVCGLATAGAMTTGDL---------F----------NFTLF-LSLLGISNIGIVSAVED 114 (221)
T ss_pred HHHHHHHHHHhhhhccceeecch---------H----------HHHHH-HHHHcccccceeehhhH
Confidence 44455788999999887764322 2 22223 4677775 577776544
No 113
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=20.62 E-value=76 Score=26.88 Aligned_cols=76 Identities=14% Similarity=0.136 Sum_probs=38.3
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhh--hhhhccccccCCCCCCCccc
Q 028026 114 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALL--GVSYGIVSSSWDPLREGSLL 190 (215)
Q Consensus 114 vVs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlL--GISYGiLSASWDp~reGSlL 190 (215)
.++||.=+|-.+..|+ -..+|..++ . .+....+++..+++|+|.- ......+...|-+++.|...
T Consensus 57 ~l~dr~g~r~~~~~~~~~~~~~~~~~----~--------~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 124 (355)
T TIGR00896 57 WLARRFGEERSVAAGLLLIAAGILIR----S--------APGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMT 124 (355)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHH----H--------hccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHH
Confidence 4567777766655554 222222211 1 1223333444444444332 22223344667667788888
Q ss_pred cHHHhhhchHH
Q 028026 191 GWNEAQRNWPV 201 (215)
Q Consensus 191 G~eE~k~Nw~~ 201 (215)
|+-.+-.|++-
T Consensus 125 ~~~~~~~~~g~ 135 (355)
T TIGR00896 125 GLYSMALMGGA 135 (355)
T ss_pred HHHHHHHHHHH
Confidence 88777666654
No 114
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=20.61 E-value=41 Score=32.10 Aligned_cols=11 Identities=45% Similarity=0.878 Sum_probs=8.6
Q ss_pred cccCCCCCccc
Q 028026 13 KVDCSHGHSKS 23 (215)
Q Consensus 13 ~~~~~~~~~~~ 23 (215)
-||||||-|..
T Consensus 265 mVD~SH~Ns~K 275 (353)
T PRK12755 265 MIDCSHANSGK 275 (353)
T ss_pred EecCCcccccc
Confidence 47999997754
No 115
>PF14940 TMEM219: Transmembrane 219
Probab=20.55 E-value=1.2e+02 Score=27.26 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=27.7
Q ss_pred HHHhhhhHHhhhhhhheeeeeeeccccccCc------hhHHHHHH
Q 028026 124 GFTVGIPLLVGLLFFPFFYYLKVVLKIDVPS------WLPVIVSF 162 (215)
Q Consensus 124 a~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~------wv~~lvS~ 162 (215)
++|+-.-+++|++++.+.||+... +++. |..|+.++
T Consensus 12 VvF~l~Ll~~aI~~l~Lg~yi~~~---~l~nPDi~~DWN~fL~~l 53 (223)
T PF14940_consen 12 VVFTLCLLLLAISFLCLGYYIKRN---ELKNPDIPQDWNTFLLSL 53 (223)
T ss_pred hHHHHHHHHHHHHHheeeeEeccc---CCCcccchhhHHHHHHhh
Confidence 566777789999999999999444 4444 98888776
No 116
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=20.41 E-value=36 Score=28.33 Aligned_cols=21 Identities=14% Similarity=0.521 Sum_probs=17.0
Q ss_pred hhHHHHhhhhHHhhhhhhhee
Q 028026 121 SRIGFTVGIPLLVGLLFFPFF 141 (215)
Q Consensus 121 rRia~f~GiP~~lG~~~F~~~ 141 (215)
+.+++.+++|++++++++.+.
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~ 176 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMY 176 (189)
T ss_pred cceeEEEEccHHHHHHHHHHH
Confidence 678899999999998866543
No 117
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=20.41 E-value=42 Score=31.90 Aligned_cols=10 Identities=50% Similarity=0.820 Sum_probs=8.2
Q ss_pred cccCCCCCcc
Q 028026 13 KVDCSHGHSK 22 (215)
Q Consensus 13 ~~~~~~~~~~ 22 (215)
-||||||-|.
T Consensus 258 mVD~SH~ns~ 267 (344)
T TIGR00034 258 MIDFSHGNSN 267 (344)
T ss_pred EEeCCCcccc
Confidence 4799999775
No 118
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=20.40 E-value=2.2e+02 Score=22.89 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=14.9
Q ss_pred HHHHHhhHHHHhhhhHHhhhhhhheeee
Q 028026 116 TNRMISRIGFTVGIPLLVGLLFFPFFYY 143 (215)
Q Consensus 116 s~RMlrRia~f~GiP~~lG~~~F~~~Y~ 143 (215)
.+.++.+++....+=++.++.++.+.|+
T Consensus 60 ~~~~~~k~~~~~~~~~~~~~~~~~i~~~ 87 (208)
T TIGR03062 60 WRIALAKLLPGGLIGVLQAIILYGVLIL 87 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666665555555555555555554
No 119
>PF15383 TMEM237: Transmembrane protein 237
Probab=20.37 E-value=1.9e+02 Score=26.26 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=28.0
Q ss_pred HHHHHHhhHHHHh-hhhHHhhhhhhheeeeeeecccccc
Q 028026 115 VTNRMISRIGFTV-GIPLLVGLLFFPFFYYLKVVLKIDV 152 (215)
Q Consensus 115 Vs~RMlrRia~f~-GiP~~lG~~~F~~~Y~L~~~~~~dv 152 (215)
-.+|-.++++++| |+-.++++.=+++.|.|...+...+
T Consensus 89 ~vq~~f~~~~~~~hG~LAG~al~h~i~v~~l~~~~~~~~ 127 (253)
T PF15383_consen 89 RVQRAFRVIGLFCHGFLAGFALWHIIVVYVLAGYQLSTV 127 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3688888888776 8877788877778888877755433
No 120
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=20.03 E-value=42 Score=31.91 Aligned_cols=10 Identities=50% Similarity=0.963 Sum_probs=8.2
Q ss_pred cccCCCCCcc
Q 028026 13 KVDCSHGHSK 22 (215)
Q Consensus 13 ~~~~~~~~~~ 22 (215)
-||||||-|.
T Consensus 264 ~VD~SH~ns~ 273 (349)
T PRK09261 264 MIDCSHANSG 273 (349)
T ss_pred EEECCCcccC
Confidence 4799999875
Done!