Query 028026
Match_columns 215
No_of_seqs 92 out of 94
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 07:47:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028026.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028026hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f93_B Sensory rhodopsin II tr 67.4 0.83 2.8E-05 36.3 -0.7 66 110-175 8-82 (122)
2 1vf5_F Protein PET M; photosyn 44.1 13 0.00044 24.1 2.0 22 158-179 6-27 (35)
3 1q90_M Cytochrome B6F complex 42.5 14 0.00048 24.4 2.0 21 158-178 7-27 (39)
4 3o7q_A L-fucose-proton symport 34.5 87 0.003 25.3 6.0 85 114-206 83-171 (438)
5 3k6g_D Telomeric repeat-bindin 34.4 4.2 0.00014 27.4 -1.5 22 163-184 7-28 (42)
6 4aps_A DI-OR tripeptide H+ sym 29.8 75 0.0026 26.4 5.0 92 115-206 342-440 (491)
7 3arc_J Photosystem II reaction 26.2 40 0.0014 22.4 2.2 23 150-173 6-28 (40)
8 1pw4_A Glycerol-3-phosphate tr 25.9 54 0.0019 26.5 3.4 31 174-204 368-399 (451)
9 1tvs_A Transactivator protein; 22.6 26 0.00089 26.1 0.8 13 162-175 38-50 (75)
10 1rh5_C Secbeta; protein transl 22.3 59 0.002 22.2 2.5 45 128-177 8-52 (53)
11 1oef_A Apolipoprotein E; glyco 21.0 55 0.0019 18.9 1.9 17 192-208 7-23 (26)
12 3tj3_C Nuclear pore complex pr 20.9 49 0.0017 26.2 2.2 17 105-121 30-46 (114)
No 1
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=67.45 E-value=0.83 Score=36.32 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=32.0
Q ss_pred CCcHHHHHHHHhhHHHHhhhhHHhhhhhhheeeeeeecc---------ccccCchhHHHHHHHHHHHhhhhhhhc
Q 028026 110 VIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVL---------KIDVPSWLPVIVSFIFFGAALLGVSYG 175 (215)
Q Consensus 110 aIPevVs~RMlrRia~f~GiP~~lG~~~F~~~Y~L~~~~---------~~dvP~wv~~lvS~~~FGlGlLGISYG 175 (215)
-.|+.|.++-=+||+.+.+.-+.+-+++-+++|+-.... .-++-.|+..++.+++.++|++|+-.|
T Consensus 8 ~~~~~v~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~seA~A~~~~V~~~liil~~v~lv~LgvvG~~lG 82 (122)
T 2f93_B 8 LLPSRVRHSYTGKMGAVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLIILLGINLGLVAATLG 82 (122)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456688889999999999988888888888888865542 134456888888888888999998755
No 2
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=44.07 E-value=13 Score=24.05 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhhhhhccccc
Q 028026 158 VIVSFIFFGAALLGVSYGIVSS 179 (215)
Q Consensus 158 ~lvS~~~FGlGlLGISYGiLSA 179 (215)
+-++.++|++-++|++.|++.-
T Consensus 6 f~~A~i~~~LvLvGla~Gf~LL 27 (35)
T 1vf5_F 6 LYAALLSFGLIFVGWGLGVLLL 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4567899999999999998754
No 3
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=42.45 E-value=14 Score=24.43 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhhhhhcccc
Q 028026 158 VIVSFIFFGAALLGVSYGIVS 178 (215)
Q Consensus 158 ~lvS~~~FGlGlLGISYGiLS 178 (215)
+-++.+||++-++|++.|++.
T Consensus 7 f~~A~i~~~L~LvGla~Gf~L 27 (39)
T 1q90_M 7 AGTALTMVGMTLVGLAIGFVL 27 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999874
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=34.49 E-value=87 Score=25.25 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=48.3
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhh---hhhccccccCCCCCCCcc
Q 028026 114 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLG---VSYGIVSSSWDPLREGSL 189 (215)
Q Consensus 114 vVs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLG---ISYGiLSASWDp~reGSl 189 (215)
.++||.=||..+..|. -+++|...+... .-.+++..+++..++.|+|.-+ ..+..++...++++.|..
T Consensus 83 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 154 (438)
T 3o7q_A 83 ILMKKLSYKAGIITGLFLYALGAALFWPA--------AEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFR 154 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHhc--------cccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHH
Confidence 3567776666555544 444444433110 1134455566666666554422 334445555566777888
Q ss_pred ccHHHhhhchHHHHHHH
Q 028026 190 LGWNEAQRNWPVFWQSL 206 (215)
Q Consensus 190 LG~eE~k~Nw~~mw~s~ 206 (215)
+|+-..-.+++.+.-.+
T Consensus 155 ~~~~~~~~~~g~~~g~~ 171 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVV 171 (438)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888887765543
No 5
>3k6g_D Telomeric repeat-binding factor 2; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=34.38 E-value=4.2 Score=27.43 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=18.8
Q ss_pred HHHHHhhhhhhhccccccCCCC
Q 028026 163 IFFGAALLGVSYGIVSSSWDPL 184 (215)
Q Consensus 163 ~~FGlGlLGISYGiLSASWDp~ 184 (215)
-+||+..|--++-+||.|||++
T Consensus 7 tT~Gi~tLk~AFK~Ls~sqD~e 28 (42)
T 3k6g_D 7 TTIGMMTLKAAFKTLSGAQDSE 28 (42)
T ss_dssp -CCCHHHHHHHHHHHHCCTTHH
T ss_pred ceeeHHHHHHHHHHhccCCCcH
Confidence 4678889999999999999985
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=29.76 E-value=75 Score=26.36 Aligned_cols=92 Identities=8% Similarity=-0.135 Sum_probs=0.0
Q ss_pred HHHHHHhh----HHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhh---hhhccccccCCCCCCC
Q 028026 115 VTNRMISR----IGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLG---VSYGIVSSSWDPLREG 187 (215)
Q Consensus 115 Vs~RMlrR----ia~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLG---ISYGiLSASWDp~reG 187 (215)
+++|+-|| .......-++.+++++.+.+.......-.-.++..+++.++++|+|... ..+.+.+..-.++..|
T Consensus 342 l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g 421 (491)
T 4aps_A 342 LWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS 421 (491)
T ss_dssp HHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Q ss_pred ccccHHHhhhchHHHHHHH
Q 028026 188 SLLGWNEAQRNWPVFWQSL 206 (215)
Q Consensus 188 SlLG~eE~k~Nw~~mw~s~ 206 (215)
...|+-.+-.+++...-..
T Consensus 422 ~~~g~~~~~~~~g~~i~~~ 440 (491)
T 4aps_A 422 QMMSMWFLSSSVGSALNAQ 440 (491)
T ss_dssp SSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 7
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=26.17 E-value=40 Score=22.43 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=15.9
Q ss_pred cccCchhHHHHHHHHHHHhhhhhh
Q 028026 150 IDVPSWLPVIVSFIFFGAALLGVS 173 (215)
Q Consensus 150 ~dvP~wv~~lvS~~~FGlGlLGIS 173 (215)
-.||.|++-.+. ++..++++||-
T Consensus 6 GRiPLWlvgtv~-G~~vi~~~giF 28 (40)
T 3arc_J 6 GRIPLWIVATVA-GMGVIVIVGLF 28 (40)
T ss_dssp TSSCHHHHHHHH-HHHHHHHHHHH
T ss_pred CcccEEeeeeeh-hhhhhheeeEE
Confidence 368999866554 45567888873
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=25.90 E-value=54 Score=26.49 Aligned_cols=31 Identities=6% Similarity=-0.208 Sum_probs=23.3
Q ss_pred hccccccCCCCCCCccccHHHhhhch-HHHHH
Q 028026 174 YGIVSSSWDPLREGSLLGWNEAQRNW-PVFWQ 204 (215)
Q Consensus 174 YGiLSASWDp~reGSlLG~eE~k~Nw-~~mw~ 204 (215)
+.+++..-+++..|+..|+-.+-.|+ +.+.-
T Consensus 368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 399 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 399 (451)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHH
Confidence 45666677777789999999888888 66543
No 9
>1tvs_A Transactivator protein; transcription regulation; NMR {Equine infectious anemia virus} SCOP: j.40.1.1 PDB: 1tvt_A
Probab=22.59 E-value=26 Score=26.05 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=10.5
Q ss_pred HHHHHHhhhhhhhc
Q 028026 162 FIFFGAALLGVSYG 175 (215)
Q Consensus 162 ~~~FGlGlLGISYG 175 (215)
.+||.- -||||||
T Consensus 38 qvCF~~-gLGIsYG 50 (75)
T 1tvs_A 38 QLCFLR-SLGIDYL 50 (75)
T ss_dssp HHHHHH-CSTTHHH
T ss_pred hhhhcc-ccccccc
Confidence 357766 8999999
No 10
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=22.29 E-value=59 Score=22.25 Aligned_cols=45 Identities=24% Similarity=0.237 Sum_probs=24.1
Q ss_pred hhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhccc
Q 028026 128 GIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIV 177 (215)
Q Consensus 128 GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGISYGiL 177 (215)
|.....|+. =||=.....+.+-|..+++.++ +|++.++.+++++|
T Consensus 8 ~~~ssaGLv----ryy~ee~~giKi~P~~Vl~~si-~~i~~V~~L~~~~~ 52 (53)
T 1rh5_C 8 GLATSAGLI----RYMDETFSKIRVKPEHVIGVTV-AFVIIEAILTYGRF 52 (53)
T ss_dssp -----------------CCCCSCCCCHHHHHHHHH-HHHHHHHHHHHTCC
T ss_pred CCcccccch----hhhhccCCccccCCeehhhhHH-HHHHHHHHHHHHHh
Confidence 555666664 4444555578888988877665 55677899998876
No 11
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=21.00 E-value=55 Score=18.91 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=14.7
Q ss_pred HHHhhhchHHHHHHHhh
Q 028026 192 WNEAQRNWPVFWQSLWS 208 (215)
Q Consensus 192 ~eE~k~Nw~~mw~s~r~ 208 (215)
-++++++|..+|+.+..
T Consensus 7 ~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 7 VEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 37899999999999875
No 12
>3tj3_C Nuclear pore complex protein NUP50; armadillo repeat, nuclear import adaptor, NLS-bearing protei nucleo-cytoplasmic shuttling, protein transport; 2.70A {Homo sapiens}
Probab=20.92 E-value=49 Score=26.16 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=12.1
Q ss_pred ccccCCCcHHHHHHHHh
Q 028026 105 EAEAGVIPEIVTNRMIS 121 (215)
Q Consensus 105 ~~~~~aIPevVs~RMlr 121 (215)
..-..+=.+|+.+|-|+
T Consensus 30 GtF~~AS~eVLs~RkIk 46 (114)
T 3tj3_C 30 GTFSMASEEVLKNRAIK 46 (114)
T ss_dssp CCCCBCCHHHHHHSCCC
T ss_pred CCcccCCHHHHhccccc
Confidence 33355788999999773
Done!