Query 028026
Match_columns 215
No_of_seqs 92 out of 94
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 07:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028026.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028026hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 32.3 12 0.0009 27.9 2.6 81 114-201 81-165 (447)
2 d1of8a_ c.1.10.4 (A:) 3-deoxy- 28.9 5.9 0.00043 34.2 0.2 10 13-22 255-264 (346)
3 d1n8fa_ c.1.10.4 (A:) 3-deoxy- 26.6 6.9 0.0005 33.7 0.2 10 13-22 256-265 (343)
4 d1ly1a_ c.37.1.1 (A:) Polynucl 21.1 27 0.002 23.0 2.4 26 106-131 126-151 (152)
5 d1ijda_ f.3.1.1 (A:) Light-har 16.8 22 0.0016 22.7 1.0 13 124-136 11-23 (46)
6 d1nkza_ f.3.1.1 (A:) Light-har 14.7 26 0.0019 22.9 1.0 13 124-136 11-23 (53)
7 d2axtj1 f.23.32.1 (J:7-40) Pho 12.7 61 0.0044 19.4 2.2 20 152-172 2-21 (34)
8 d1pv7a_ f.38.1.2 (A:) Lactose 12.6 66 0.0048 22.6 2.8 31 172-202 332-363 (417)
9 d1q90l_ f.23.24.1 (L:) PetL su 11.3 59 0.0043 19.0 1.8 17 160-176 5-21 (32)
10 d1riqa1 a.203.1.1 (A:237-457) 10.5 53 0.0038 25.6 1.8 21 107-127 45-70 (221)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=32.28 E-value=12 Score=27.91 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=40.6
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHh---hhhhhhccccccCCCCCCCcc
Q 028026 114 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAA---LLGVSYGIVSSSWDPLREGSL 189 (215)
Q Consensus 114 vVs~RMlrRia~f~Gi-P~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlG---lLGISYGiLSASWDp~reGSl 189 (215)
..+||.-||..+..|. -.+++..++.+..... ..+..+++..++.|++ .....+.+++-..++++.|..
T Consensus 81 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~ 153 (447)
T d1pw4a_ 81 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 153 (447)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH-------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHHHHHhhccccchhh-------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccccc
Confidence 4567877777666554 3344444333221111 1122233333333332 223344455555556667888
Q ss_pred ccHHHhhhchHH
Q 028026 190 LGWNEAQRNWPV 201 (215)
Q Consensus 190 LG~eE~k~Nw~~ 201 (215)
+|+-..-.+++-
T Consensus 154 ~~~~~~~~~~g~ 165 (447)
T d1pw4a_ 154 VSVWNCAHNVGG 165 (447)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccccccccchhh
Confidence 888777766654
No 2
>d1of8a_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]}
Probab=28.89 E-value=5.9 Score=34.18 Aligned_cols=10 Identities=50% Similarity=0.830 Sum_probs=8.4
Q ss_pred cccCCCCCcc
Q 028026 13 KVDCSHGHSK 22 (215)
Q Consensus 13 ~~~~~~~~~~ 22 (215)
-||||||.|.
T Consensus 255 mIDcSHgNS~ 264 (346)
T d1of8a_ 255 MIDYSHGNSN 264 (346)
T ss_dssp EEESSGGGGT
T ss_pred EEeccccccc
Confidence 4899999885
No 3
>d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Escherichia coli, phenylalanine-regulated isozyme [TaxId: 562]}
Probab=26.55 E-value=6.9 Score=33.68 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=8.2
Q ss_pred cccCCCCCcc
Q 028026 13 KVDCSHGHSK 22 (215)
Q Consensus 13 ~~~~~~~~~~ 22 (215)
-||||||.|.
T Consensus 256 mVDcSHgNS~ 265 (343)
T d1n8fa_ 256 MIDFSHANSS 265 (343)
T ss_dssp EEECSGGGTT
T ss_pred hhhccCCccc
Confidence 3799999875
No 4
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=21.09 E-value=27 Score=22.95 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=21.8
Q ss_pred cccCCCcHHHHHHHHhhHHHHhhhhH
Q 028026 106 AEAGVIPEIVTNRMISRIGFTVGIPL 131 (215)
Q Consensus 106 ~~~~aIPevVs~RMlrRia~f~GiP~ 131 (215)
+....+|+.|.+||.+|+--+.|.|.
T Consensus 126 R~~~~~~~~~i~~~~~~~~~~~~~~~ 151 (152)
T d1ly1a_ 126 RGTKAVPIDVLRSMYKSMREYLGLPV 151 (152)
T ss_dssp CGGGCCCHHHHHHHHHHHHHHHTCCC
T ss_pred cCCCCCCHHHHHHHHHHHHhhcCCCC
Confidence 44457899999999999999988874
No 5
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=16.81 E-value=22 Score=22.73 Aligned_cols=13 Identities=31% Similarity=0.720 Sum_probs=10.2
Q ss_pred HHHhhhhHHhhhh
Q 028026 124 GFTVGIPLLVGLL 136 (215)
Q Consensus 124 a~f~GiP~~lG~~ 136 (215)
=..+|+|++||-.
T Consensus 11 ~PtvG~Pl~LgsV 23 (46)
T d1ijda_ 11 PPAFGLPLMLGAV 23 (46)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CCCcCchhHHHHH
Confidence 3578999999854
No 6
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=14.70 E-value=26 Score=22.89 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=10.3
Q ss_pred HHHhhhhHHhhhh
Q 028026 124 GFTVGIPLLVGLL 136 (215)
Q Consensus 124 a~f~GiP~~lG~~ 136 (215)
=..+|+|++||-.
T Consensus 11 ~PtVG~Pl~LgsV 23 (53)
T d1nkza_ 11 NPAIGIPALLGSV 23 (53)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CCCcCchhHHHHH
Confidence 3578999999854
No 7
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.74 E-value=61 Score=19.36 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=12.1
Q ss_pred cCchhHHHHHHHHHHHhhhhh
Q 028026 152 VPSWLPVIVSFIFFGAALLGV 172 (215)
Q Consensus 152 vP~wv~~lvS~~~FGlGlLGI 172 (215)
+|.|++-.+. ++-.++++||
T Consensus 2 iPLWlv~tv~-G~~vi~~vG~ 21 (34)
T d2axtj1 2 IPLWIVATVA-GMGVIVIVGL 21 (34)
T ss_dssp CCHHHHHHHH-HHHHHHHHHH
T ss_pred CcEEEeeehh-hhhhHhheee
Confidence 6888765543 3344566665
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=12.64 E-value=66 Score=22.60 Aligned_cols=31 Identities=3% Similarity=-0.010 Sum_probs=17.8
Q ss_pred hhhccccccCCCCCCCccccH-HHhhhchHHH
Q 028026 172 VSYGIVSSSWDPLREGSLLGW-NEAQRNWPVF 202 (215)
Q Consensus 172 ISYGiLSASWDp~reGSlLG~-eE~k~Nw~~m 202 (215)
..+..++..-+++..|+..|+ ..+-.+++.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 363 (417)
T d1pv7a_ 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363 (417)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 334455555666667888886 3444444443
No 9
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=11.27 E-value=59 Score=19.02 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=10.1
Q ss_pred HHHHHHHHhhhhhhhcc
Q 028026 160 VSFIFFGAALLGVSYGI 176 (215)
Q Consensus 160 vS~~~FGlGlLGISYGi 176 (215)
+|.+-..+|.||++.||
T Consensus 5 ~syvglligal~~tlgi 21 (32)
T d1q90l_ 5 TSYVGLLIGALVFTLGI 21 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455556667666665
No 10
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=10.49 E-value=53 Score=25.59 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=0.0
Q ss_pred ccCCCcH-----HHHHHHHhhHHHHh
Q 028026 107 EAGVIPE-----IVTNRMISRIGFTV 127 (215)
Q Consensus 107 ~~~aIPe-----vVs~RMlrRia~f~ 127 (215)
.++++|- .|..|+|||.+-+.
T Consensus 45 ~DGv~PsN~grGYvlRriiRRa~r~~ 70 (221)
T d1riqa1 45 SDGVIPSNEGRGYVIRRILRRAMRFG 70 (221)
T ss_dssp HTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCcCCCchHHHHHHHHHHHHH
Done!