Your job contains 1 sequence.
>028027
MGAKQKKALKKNLKKVSSQLPVPSDKKGAADFLPLEGGPGRKLTEEKPLVNKATVLYIGR
IPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL
FEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRD
QKRRKRIEAAGIEYECPEIVGNVMPAPKKIKFNEG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028027
(215 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2184367 - symbol:AT5G04600 species:3702 "Arabi... 770 1.9e-76 1
ASPGD|ASPL0000073265 - symbol:AN4346 species:162425 "Emer... 384 1.5e-35 1
POMBASE|SPCC1827.05c - symbol:SPCC1827.05c "nucleolar RNA... 349 7.7e-32 1
ZFIN|ZDB-GENE-021231-4 - symbol:mki67ip "mki67 (FHA domai... 339 8.8e-31 1
UNIPROTKB|Q6GL69 - symbol:mki67ipl "MKI67 FHA domain-inte... 336 1.8e-30 1
UNIPROTKB|F1RXX7 - symbol:MKI67 "Uncharacterized protein"... 335 2.3e-30 1
UNIPROTKB|Q7SYS2 - symbol:mki67ipl "MKI67 FHA domain-inte... 322 5.6e-29 1
CGD|CAL0002077 - symbol:NOP15 species:5476 "Candida albic... 316 2.4e-28 1
UNIPROTKB|F1NT45 - symbol:MKI67IP "Uncharacterized protei... 315 3.1e-28 1
UNIPROTKB|Q3SZM1 - symbol:MKI67IP "MKI67 FHA domain-inter... 315 3.1e-28 1
UNIPROTKB|E2RHG8 - symbol:MKI67IP "Uncharacterized protei... 315 3.1e-28 1
UNIPROTKB|J9NXM6 - symbol:MKI67IP "Uncharacterized protei... 315 3.1e-28 1
UNIPROTKB|G4MTM5 - symbol:MGG_12370 "MKI67 FHA domain-int... 301 9.4e-27 1
UNIPROTKB|E9PFS2 - symbol:MKI67IP "MKI67 FHA domain-inter... 292 8.4e-26 1
UNIPROTKB|Q9BYG3 - symbol:MKI67IP "MKI67 FHA domain-inter... 291 1.1e-25 1
SGD|S000005054 - symbol:NOP15 "Constituent of 66S pre-rib... 280 1.6e-24 1
UNIPROTKB|C9J6C5 - symbol:MKI67IP "MKI67 FHA domain-inter... 257 4.3e-22 1
RGD|708462 - symbol:Mki67ip "Mki67 (FHA domain) interacti... 254 9.0e-22 1
MGI|MGI:1915199 - symbol:Mki67ip "Mki67 (FHA domain) inte... 244 1.0e-20 1
WB|WBGene00011408 - symbol:T04A8.6 species:6239 "Caenorha... 230 3.1e-19 1
FB|FBgn0038989 - symbol:CG6937 species:7227 "Drosophila m... 224 2.1e-18 1
DICTYBASE|DDB_G0275885 - symbol:DDB_G0275885 "MKI67 FHA d... 160 1.3e-11 1
UNIPROTKB|Q8EK89 - symbol:SO_0208 "RNA-binding protein" s... 135 3.6e-09 1
TIGR_CMR|SO_0208 - symbol:SO_0208 "RNA-binding protein" s... 135 3.6e-09 1
UNIPROTKB|Q83D11 - symbol:CBU_0935 "RNA binding protein" ... 133 5.9e-09 1
TIGR_CMR|CBU_0935 - symbol:CBU_0935 "RNA-binding protein"... 133 5.9e-09 1
DICTYBASE|DDB_G0288291 - symbol:DDB_G0288291 "putative RN... 121 1.2e-07 1
UNIPROTKB|I3LDD0 - symbol:I3LDD0 "Uncharacterized protein... 131 5.5e-07 1
DICTYBASE|DDB_G0294559 - symbol:DDB_G0294559 "RNA-binding... 112 5.9e-07 2
CGD|CAL0002199 - symbol:orf19.7097 species:5476 "Candida ... 124 9.5e-07 1
UNIPROTKB|Q5AFH1 - symbol:SGN12 "Putative uncharacterized... 124 9.5e-07 1
WB|WBGene00016245 - symbol:C30B5.4 species:6239 "Caenorha... 130 1.2e-06 1
UNIPROTKB|I3LAS7 - symbol:I3LAS7 "Uncharacterized protein... 128 1.3e-06 1
UNIPROTKB|Q9KVI6 - symbol:VC_0159 "RNA-binding protein" s... 112 1.5e-06 1
TIGR_CMR|VC_0159 - symbol:VC_0159 "RNA-binding protein" s... 112 1.5e-06 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 111 1.9e-06 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 110 2.5e-06 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 110 2.5e-06 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 109 3.4e-06 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 109 3.4e-06 1
UNIPROTKB|I3LKX8 - symbol:I3LKX8 "Uncharacterized protein... 125 3.6e-06 1
FB|FBgn0038345 - symbol:CG5213 species:7227 "Drosophila m... 124 4.3e-06 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 108 4.4e-06 1
UNIPROTKB|G4NKC1 - symbol:MGG_03086 "U2 snRNP component I... 105 4.9e-06 2
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 119 5.0e-06 1
ASPGD|ASPL0000074275 - symbol:AN4665 species:162425 "Emer... 118 5.5e-06 2
UNIPROTKB|K7EP16 - symbol:EIF3G "Eukaryotic translation i... 107 5.7e-06 1
TAIR|locus:2177033 - symbol:AT5G12190 species:3702 "Arabi... 107 5.7e-06 1
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 115 6.6e-06 1
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp... 127 7.1e-06 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 112 7.5e-06 1
WB|WBGene00004315 - symbol:rbd-1 species:6239 "Caenorhabd... 129 8.9e-06 1
SGD|S000001323 - symbol:SNP1 "Component of U1 snRNP requi... 123 9.5e-06 1
UNIPROTKB|Q3AF33 - symbol:CHY_0389 "RNA-binding protein" ... 105 9.8e-06 1
TIGR_CMR|CHY_0389 - symbol:CHY_0389 "RNA-binding protein"... 105 9.8e-06 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 105 9.8e-06 1
WB|WBGene00000774 - symbol:cpf-2 species:6239 "Caenorhabd... 123 1.2e-05 1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl... 104 1.3e-05 1
TAIR|locus:2023903 - symbol:ATE1 "ATPase E1" species:3702... 115 1.4e-05 1
GENEDB_PFALCIPARUM|PF14_0656 - symbol:PF14_0656 "U2 snRNP... 127 1.5e-05 1
UNIPROTKB|Q8IKE9 - symbol:PF14_0656 "U2 snRNP auxiliary f... 127 1.5e-05 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 122 1.5e-05 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 116 1.5e-05 1
UNIPROTKB|E1C131 - symbol:E1C131 "Uncharacterized protein... 103 1.7e-05 1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 103 1.7e-05 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 103 1.7e-05 1
TAIR|locus:2075676 - symbol:AT3G47120 species:3702 "Arabi... 122 1.7e-05 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 123 1.9e-05 1
UNIPROTKB|G5E5I0 - symbol:RBMX2 "Uncharacterized protein"... 121 2.1e-05 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 109 2.4e-05 1
UNIPROTKB|F1S8E8 - symbol:CELF5 "Uncharacterized protein"... 122 2.4e-05 1
ZFIN|ZDB-GENE-030131-6251 - symbol:ppil4 "peptidylprolyl ... 122 2.7e-05 1
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 123 2.8e-05 1
FB|FBgn0037602 - symbol:CG8021 species:7227 "Drosophila m... 101 2.9e-05 1
UNIPROTKB|B3KWE6 - symbol:BRUNOL6 "cDNA FLJ42868 fis, clo... 120 3.0e-05 1
UNIPROTKB|F1PXQ8 - symbol:CELF5 "Uncharacterized protein"... 122 3.0e-05 1
UNIPROTKB|Q8N6W0 - symbol:CELF5 "CUGBP Elav-like family m... 122 3.0e-05 1
UNIPROTKB|F1MD42 - symbol:F1MD42 "Uncharacterized protein... 122 3.0e-05 1
UNIPROTKB|B4DEH8 - symbol:PABPN1 "cDNA FLJ57714, highly s... 111 3.3e-05 1
TAIR|locus:2176222 - symbol:AT5G51300 species:3702 "Arabi... 124 3.4e-05 1
UNIPROTKB|J3KSW7 - symbol:SRSF1 "Serine/arginine-rich-spl... 100 3.7e-05 1
ZFIN|ZDB-GENE-050208-746 - symbol:celf5 "cugbp, Elav-like... 122 4.1e-05 1
CGD|CAL0001156 - symbol:orf19.1045 species:5476 "Candida ... 119 4.1e-05 1
UNIPROTKB|Q59VP9 - symbol:IST3 "Putative uncharacterized ... 119 4.1e-05 1
UNIPROTKB|E2RJG5 - symbol:CELF6 "Uncharacterized protein"... 120 4.4e-05 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 115 4.5e-05 1
FB|FBgn0032822 - symbol:CG10466 species:7227 "Drosophila ... 107 4.5e-05 1
FB|FBgn0000114 - symbol:aret "arrest" species:7227 "Droso... 123 4.6e-05 1
GENEDB_PFALCIPARUM|PF13_0122 - symbol:PF13_0122 "cyclophi... 99 4.8e-05 1
UNIPROTKB|C0H5C7 - symbol:PF13_0122 "RRM containing cyclo... 99 4.8e-05 1
UNIPROTKB|E1BTK3 - symbol:ZCRB1 "Uncharacterized protein"... 104 4.9e-05 2
MGI|MGI:1923433 - symbol:Celf6 "CUGBP, Elav-like family m... 120 4.9e-05 1
RGD|1310451 - symbol:Celf6 "CUGBP, Elav-like family membe... 120 4.9e-05 1
TAIR|locus:2086804 - symbol:SCL30A "SC35-like splicing fa... 116 5.2e-05 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 111 5.3e-05 1
UNIPROTKB|Q96J87 - symbol:CELF6 "CUGBP Elav-like family m... 120 5.3e-05 1
UNIPROTKB|E1B8K2 - symbol:CELF6 "Uncharacterized protein"... 120 5.3e-05 1
UNIPROTKB|F1SHM1 - symbol:CELF6 "Uncharacterized protein"... 120 5.3e-05 1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl... 114 5.4e-05 1
FB|FBgn0027617 - symbol:CG5808 species:7227 "Drosophila m... 121 6.0e-05 1
WARNING: Descriptions of 276 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2184367 [details] [associations]
symbol:AT5G04600 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006333 "chromatin assembly or disassembly" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0051604
"protein maturation" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162875 eggNOG:NOG244773
HOGENOM:HOG000242795 KO:K14838 HSSP:Q61474 UniGene:At.4932
UniGene:At.65019 EMBL:AF378899 EMBL:AY055787 EMBL:AY063822
EMBL:AY123013 IPI:IPI00541604 PIR:T48456 RefSeq:NP_196080.1
ProteinModelPortal:Q9LZ65 SMR:Q9LZ65 IntAct:Q9LZ65 STRING:Q9LZ65
PaxDb:Q9LZ65 PRIDE:Q9LZ65 EnsemblPlants:AT5G04600.1 GeneID:830337
KEGG:ath:AT5G04600 TAIR:At5g04600 InParanoid:Q9LZ65 OMA:IGHIPHG
PhylomeDB:Q9LZ65 ProtClustDB:CLSN2686415 ArrayExpress:Q9LZ65
Genevestigator:Q9LZ65 Uniprot:Q9LZ65
Length = 222
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 141/199 (70%), Positives = 169/199 (84%)
Query: 17 SSQLPVPSDKKGAADFLPLEGGPGRKL-TEEKPLVNKATVLYIGRIPHGFYEKEMQAFFS 75
SSQLP+P + K +ADFLPLEGGP RK PL NKATVLYIGRIPHGFYE E++AFFS
Sbjct: 22 SSQLPLPQNPKPSADFLPLEGGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFS 81
Query: 76 QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHV 135
QFG +KR+R+ARNKKTG+SKHFGFI+F DPEVAE+ A AM+ YLL EH+L+VH+I PE+V
Sbjct: 82 QFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKVHVIEPENV 141
Query: 136 HPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYE 195
P LWRGF +KPVD VQ+ER+ NKERTLEEH+K+++KI+K+DQKRRKRIEAAGIEYE
Sbjct: 142 KPNLWRGFKCNFKPVDSVQIERRQLNKERTLEEHRKMLQKIVKKDQKRRKRIEAAGIEYE 201
Query: 196 CPEIVGNVMPAPKKIKFNE 214
CPE+VGN P PK+IKF+E
Sbjct: 202 CPELVGNTQPVPKRIKFSE 220
>ASPGD|ASPL0000073265 [details] [associations]
symbol:AN4346 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:NOG244773 KO:K14838 OrthoDB:EOG4BK8DG
EMBL:AACD01000075 RefSeq:XP_661950.1 ProteinModelPortal:Q5B534
EnsemblFungi:CADANIAT00006114 GeneID:2872144 KEGG:ani:AN4346.2
HOGENOM:HOG000187934 OMA:YLMYGHI Uniprot:Q5B534
Length = 445
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 81/198 (40%), Positives = 121/198 (61%)
Query: 22 VPSDKKGAADFLPLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIK 81
+P KK L L+ + + E+P V+Y+GRIPHGFYE +M+A+FSQFG I
Sbjct: 184 IPDSKKAKRKILKLQK-QNKAESSEQP-----GVVYVGRIPHGFYEHQMRAYFSQFGDIT 237
Query: 82 RLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWR 141
+LR++RN+ TG+SKH+ FIEF VA++VA M YL++ HIL+ +P E +HP+LW+
Sbjct: 238 KLRLSRNRHTGKSKHYAFIEFASESVAKIVAATMDNYLMYGHILKCKYVPSEQLHPELWK 297
Query: 142 GFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIVG 201
G N R+K ++E+K NK RT E K +EK KR + ++++ G E E PE+
Sbjct: 298 GANRRFKATPWNRIEQKRLNKGRTRENWTKNIEKEQKRRLAKAEKLKELGYEIELPELKS 357
Query: 202 -NVMPAPK---KIKFNEG 215
+ +P K ++K EG
Sbjct: 358 VDEVPVQKPDEEVKAIEG 375
>POMBASE|SPCC1827.05c [details] [associations]
symbol:SPCC1827.05c "nucleolar RNA-binding protein NIFK
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISM] [GO:0005730 "nucleolus"
evidence=ISS;IDA] [GO:0042254 "ribosome biogenesis" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPCC1827.05c GO:GO:0005730 EMBL:CU329672
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0042254 GO:GO:0003723
HSSP:Q15427 eggNOG:NOG244773 KO:K14838 OMA:QKHEERI
OrthoDB:EOG4BK8DG PIR:T41166 RefSeq:NP_588551.1
ProteinModelPortal:O74978 STRING:O74978 EnsemblFungi:SPCC1827.05c.1
GeneID:2539389 KEGG:spo:SPCC1827.05c NextBio:20800553
Uniprot:O74978
Length = 276
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 64/155 (41%), Positives = 103/155 (66%)
Query: 41 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFI 100
+K++E K L K VLY+GR+PHGFYEK+M+ +FSQFG + RLR++RN+KTG SKH+ FI
Sbjct: 92 KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151
Query: 101 EFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQ 160
EF +VA VVA+ MH YLL+ +LQ +IP + VH +++G + +K + + R
Sbjct: 152 EFESLDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKRIPHATIARLQH 211
Query: 161 NKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYE 195
K + E+ KL+ + ++ + ++++++ GI E
Sbjct: 212 EKPLSKEKADKLITRHNRKLKLKKRKLKELGITLE 246
>ZFIN|ZDB-GENE-021231-4 [details] [associations]
symbol:mki67ip "mki67 (FHA domain) interacting
nucleolar phosphoprotein (human)" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010923 "negative regulation
of phosphatase activity" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-021231-4
GO:GO:0007275 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0010923 CTD:84365 eggNOG:NOG244773
GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
HOVERGEN:HBG057796 KO:K14838 OMA:QVRKRIT OrthoDB:EOG4MKNGX
InterPro:IPR021043 Pfam:PF12196 EMBL:AF506200 EMBL:BC071545
IPI:IPI00502973 RefSeq:NP_775395.1 UniGene:Dr.76897
ProteinModelPortal:Q8JIY8 SMR:Q8JIY8 STRING:Q8JIY8 PRIDE:Q8JIY8
Ensembl:ENSDART00000059549 GeneID:317644 KEGG:dre:317644
InParanoid:Q8JIY8 NextBio:20807127 Bgee:Q8JIY8 Uniprot:Q8JIY8
Length = 269
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 67/154 (43%), Positives = 101/154 (65%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
VLY+G +P G +E +++++F QFG + RLR++R+KKTG SK +GF+EF EVA++VA+
Sbjct: 46 VLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAET 105
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M+ YL+ E I++ H+IPPE VH KL+ G +K V R NK T ++ KK+
Sbjct: 106 MNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAVTR--YNKTHTEDDVKKVGT 163
Query: 175 KILKRDQKRRKRIEAAGIEYECPEIVGNVMPAPK 208
K+L ++ K RKR+ A GI+Y+ P + PA K
Sbjct: 164 KLLSKESKLRKRLAAKGIDYDFPGFAAQI-PAKK 196
>UNIPROTKB|Q6GL69 [details] [associations]
symbol:mki67ipl "MKI67 FHA domain-interacting nucleolar
phosphoprotein-like" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0010923 "negative regulation of phosphatase activity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0010923 CTD:84365
eggNOG:NOG244773 HOGENOM:HOG000242795 HOVERGEN:HBG057796 KO:K14838
OrthoDB:EOG4MKNGX InterPro:IPR021043 Pfam:PF12196 EMBL:BC074637
RefSeq:NP_001005639.1 UniGene:Str.1406 ProteinModelPortal:Q6GL69
SMR:Q6GL69 STRING:Q6GL69 GeneID:448106 KEGG:xtr:448106
Xenbase:XB-GENE-940532 InParanoid:Q6GL69 Uniprot:Q6GL69
Length = 276
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 61/143 (42%), Positives = 95/143 (66%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
V+YIG IP YE +++ +FSQFG + RLR++R+KKTG SK + ++EF EVA++VAD
Sbjct: 42 VIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADT 101
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M+ YL E +L+ +PPE VHP+L+ G +++ + V R NK R+ E KK+ +
Sbjct: 102 MNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKFRKPTKPAVSR--YNKRRSEAEQKKMTQ 159
Query: 175 KILKRDQKRRKRIEAAGIEYECP 197
++L ++ K RKR+ GI+Y+ P
Sbjct: 160 RMLSKENKVRKRLAEKGIDYDFP 182
>UNIPROTKB|F1RXX7 [details] [associations]
symbol:MKI67 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 OMA:QVRKRIT InterPro:IPR021043
Pfam:PF12196 EMBL:AEMK01028690 EMBL:CU655817
Ensembl:ENSSSCT00000017130 Uniprot:F1RXX7
Length = 294
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 64/162 (39%), Positives = 105/162 (64%)
Query: 41 RKLTEEKPLVNKAT--VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFG 98
R+ ++P K T V+Y+G +P YE +++A+FSQFG + RLR++R+KKTG SK +G
Sbjct: 30 RRRATKQPEKQKLTPGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYG 89
Query: 99 FIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERK 158
F+EF +VA + A+ M+ YL E +L+ H+IPPE VH +L+R ++ +K V+R
Sbjct: 90 FVEFESEDVARIAAETMNNYLFGERLLKCHIIPPEKVHEELFREWHMPFKRPSFPAVKR- 148
Query: 159 LQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIV 200
N++RTL + ++ E+ K+++ RKR+ GI+Y P +V
Sbjct: 149 -YNQKRTLRQKLRMEERFKKKEKSLRKRLAKKGIDYNFPSLV 189
>UNIPROTKB|Q7SYS2 [details] [associations]
symbol:mki67ipl "MKI67 FHA domain-interacting nucleolar
phosphoprotein-like" species:8355 "Xenopus laevis" [GO:0010923
"negative regulation of phosphatase activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0010923 CTD:84365 HOVERGEN:HBG057796 KO:K14838
InterPro:IPR021043 Pfam:PF12196 EMBL:BC054288 EMBL:BC122487
RefSeq:NP_001183998.1 UniGene:Xl.13504 ProteinModelPortal:Q7SYS2
SMR:Q7SYS2 GeneID:398645 KEGG:xla:398645 Xenbase:XB-GENE-940537
Uniprot:Q7SYS2
Length = 278
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 59/143 (41%), Positives = 94/143 (65%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
V+YIG IP E ++Q +F+QFG + RLR++R+KKTG SK + ++E+ EVA++VAD
Sbjct: 42 VIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVADT 101
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M+ YL E +L+ + PE VHP+L+ G N R++ + V R N +R EE KK+ +
Sbjct: 102 MNNYLFCERLLKCEFVTPEKVHPRLFIGCNTRFRKPTKPAVTR--YNSKRNKEEVKKMTQ 159
Query: 175 KILKRDQKRRKRIEAAGIEYECP 197
+++ ++ K RKR+ GI+Y+ P
Sbjct: 160 RMISKEYKLRKRLAEKGIDYDFP 182
>CGD|CAL0002077 [details] [associations]
symbol:NOP15 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000915 "cytokinesis, actomyosin
contractile ring assembly" evidence=IEA] [GO:0042273 "ribosomal
large subunit biogenesis" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0002077 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:NOG244773 KO:K14838 RefSeq:XP_720342.1
RefSeq:XP_888701.1 ProteinModelPortal:Q5AFL8 STRING:Q5AFL8
GeneID:3637966 GeneID:3704039 KEGG:cal:CaO19.7050
KEGG:cal:CaO19_7050 Uniprot:Q5AFL8
Length = 267
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 59/153 (38%), Positives = 102/153 (66%)
Query: 47 KPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPE 106
K +K+ V+YIGR+P GF E E++ +FSQFG + +++ARNKKTG +KH+GFIEF+ E
Sbjct: 117 KSTKSKSGVIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIE 176
Query: 107 VAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTL 166
VA+V A+ M+ YLLF H+++ ++ E+ H ++ N ++K + ++ ++ K RT
Sbjct: 177 VAKVAAETMNNYLLFGHLIKCEVV--ENPHEDTFKHGNRKFKVIPWKKIAKEKHEKSRTE 234
Query: 167 EEHKKLVEKILKRDQKRRKRIEAAGIEYECPEI 199
EE K L+ K + QK+++ +++ GI+++ I
Sbjct: 235 EEWKVLIAKFEESKQKKQEELKSKGIDFDVSAI 267
>UNIPROTKB|F1NT45 [details] [associations]
symbol:MKI67IP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000794 "condensed nuclear chromosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0010923 "negative regulation of
phosphatase activity" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000794 GO:GO:0010923
GeneTree:ENSGT00390000011515 OMA:QVRKRIT InterPro:IPR021043
Pfam:PF12196 EMBL:AADN02016872 IPI:IPI00580070 UniGene:Gga.9339
Ensembl:ENSGALT00000019039 NextBio:20826597 Uniprot:F1NT45
Length = 276
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 60/158 (37%), Positives = 98/158 (62%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
V+Y+G +P G E +++ +F QFG ++RLR++R+KKTG SK + FIEF +VA++VAD
Sbjct: 45 VVYVGHLPRGLCEPQLRQYFEQFGTVRRLRLSRSKKTGGSKGYAFIEFESDDVAKIVADT 104
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M+ YL E +L+ +PPE VH L++ ++ + V+R NK R+L E K+ +
Sbjct: 105 MNNYLFSERLLKCQFMPPERVHANLFKNSERMFQKPSQPAVKR--YNKVRSLVEKAKMAK 162
Query: 175 KILKRDQKRRKRIEAAGIEYECPEIVGNVMPAP-KKIK 211
++L+++ RKR+ GI+Y P +P KK+K
Sbjct: 163 RLLRKENCLRKRLAEKGIKYSFPGFAAQGLPVKRKKVK 200
>UNIPROTKB|Q3SZM1 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9913 "Bos taurus" [GO:0010923 "negative
regulation of phosphatase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000794
GO:GO:0010923 EMBL:BC102791 IPI:IPI00706135 RefSeq:NP_001029526.1
UniGene:Bt.53167 HSSP:Q9BYG3 ProteinModelPortal:Q3SZM1 SMR:Q3SZM1
STRING:Q3SZM1 Ensembl:ENSBTAT00000031564 GeneID:509598
KEGG:bta:509598 CTD:84365 eggNOG:NOG244773
GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
HOVERGEN:HBG057796 InParanoid:Q3SZM1 KO:K14838 OMA:QVRKRIT
OrthoDB:EOG4MKNGX NextBio:20869038 InterPro:IPR021043 Pfam:PF12196
Uniprot:Q3SZM1
Length = 296
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 63/162 (38%), Positives = 104/162 (64%)
Query: 41 RKLTEEKPLVNKAT--VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFG 98
R+ T+++ K T V+Y+G +P YE +++A+FSQFG + R R++R+KKTG SK +G
Sbjct: 31 RRATKQQEK-QKPTPGVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYG 89
Query: 99 FIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERK 158
F+EF +VA++ A+ M+ YL E +L+ H IPPE VH +L+R ++ +K V+R
Sbjct: 90 FVEFESEDVAKIAAETMNNYLFGERLLKCHFIPPEKVHEELFREWHMPFKRPSYPAVKRY 149
Query: 159 LQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIV 200
QN R+L + ++ E+ K+++ RKR+ GI+Y P +V
Sbjct: 150 NQN--RSLVQKLRMEERFKKKEKLLRKRLAKKGIDYNFPSLV 189
>UNIPROTKB|E2RHG8 [details] [associations]
symbol:MKI67IP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 OMA:QVRKRIT InterPro:IPR021043
Pfam:PF12196 EMBL:AAEX03011863 Ensembl:ENSCAFT00000007586
Uniprot:E2RHG8
Length = 299
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 63/162 (38%), Positives = 103/162 (63%)
Query: 41 RKLTEEKPLVNKAT--VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFG 98
R+ ++K K T V+Y+G +P YE +++A+FSQFG + R R++R+K+TG SK +
Sbjct: 31 RRAAQQKEK-EKLTPGVIYVGHLPPALYETQIRAYFSQFGTVTRFRLSRSKRTGNSKGYA 89
Query: 99 FIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERK 158
F+EF +VA++VAD M+ YL E +LQ H IPPE VH +L+R + +K V+R
Sbjct: 90 FVEFASEDVAKIVADTMNNYLFGERLLQCHFIPPEKVHEELFREWYIPFKKPSYPAVKRY 149
Query: 159 LQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIV 200
QN RTL + ++ E+ K+++ RK++ GI+Y+ P ++
Sbjct: 150 NQN--RTLLQKLQMEERFKKKEKLLRKKLAKKGIDYDFPSLI 189
>UNIPROTKB|J9NXM6 [details] [associations]
symbol:MKI67IP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 KO:K14838 InterPro:IPR021043
Pfam:PF12196 EMBL:AAEX03011863 RefSeq:XP_003639749.1
ProteinModelPortal:J9NXM6 Ensembl:ENSCAFT00000044914
GeneID:100856252 KEGG:cfa:100856252 Uniprot:J9NXM6
Length = 297
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 63/162 (38%), Positives = 103/162 (63%)
Query: 41 RKLTEEKPLVNKAT--VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFG 98
R+ ++K K T V+Y+G +P YE +++A+FSQFG + R R++R+K+TG SK +
Sbjct: 31 RRAAQQKEK-EKLTPGVIYVGHLPPALYETQIRAYFSQFGTVTRFRLSRSKRTGNSKGYA 89
Query: 99 FIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERK 158
F+EF +VA++VAD M+ YL E +LQ H IPPE VH +L+R + +K V+R
Sbjct: 90 FVEFASEDVAKIVADTMNNYLFGERLLQCHFIPPEKVHEELFREWYIPFKKPSYPAVKRY 149
Query: 159 LQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIV 200
QN RTL + ++ E+ K+++ RK++ GI+Y+ P ++
Sbjct: 150 NQN--RTLLQKLQMEERFKKKEKLLRKKLAKKGIDYDFPSLI 189
>UNIPROTKB|G4MTM5 [details] [associations]
symbol:MGG_12370 "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581 EMBL:CM001232
KO:K14838 RefSeq:XP_003715390.1 ProteinModelPortal:G4MTM5
EnsemblFungi:MGG_12370T0 GeneID:2683169 KEGG:mgr:MGG_12370
Uniprot:G4MTM5
Length = 378
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 63/146 (43%), Positives = 88/146 (60%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
V+YIG IP+GF+E E++ + SQFG I LR++RNKKTG SK + F+EF D A +VA
Sbjct: 169 VIYIGHIPYGFFEHEIRQYLSQFGTITNLRLSRNKKTGASKGYAFVEFQDASTAAIVAKT 228
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M YLLF IL+V L+P E H L++G N R+K V ++ K K + K VE
Sbjct: 229 MDAYLLFGRILKVKLVPRESQHDNLFKGANRRFKKVPWTKMAGKELEKPKGEARWGKAVE 288
Query: 175 KILKRDQKRRKRI-EAAGIEYECPEI 199
K +R R +++ E G E+E P +
Sbjct: 289 KENRRRSGRLEKLRELMGYEFEAPAV 314
>UNIPROTKB|E9PFS2 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018737 HGNC:HGNC:17838 IPI:IPI00908705
ProteinModelPortal:E9PFS2 SMR:E9PFS2 Ensembl:ENST00000409201
ArrayExpress:E9PFS2 Bgee:E9PFS2 Uniprot:E9PFS2
Length = 199
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 56/167 (33%), Positives = 103/167 (61%)
Query: 41 RKLTEEKPLVNKAT-VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGF 99
+++T+ K V+Y+ +P+ E ++ ++FSQFG + R R++R+K+TG SK + F
Sbjct: 31 KRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAF 90
Query: 100 IEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKL 159
+EF +VA++VA+ M+ YL E +L+ H +PPE VH +L++ +N +K V+R
Sbjct: 91 VEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKR-- 148
Query: 160 QNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIVGNVMPA 206
N+ RTL + ++ E+ K+++ RK++ GI+Y+ P ++ V A
Sbjct: 149 YNRNRTLTQKLRMEERFKKKERLLRKKLAKKGIDYDFPSLLSLVYSA 195
>UNIPROTKB|Q9BYG3 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006461 "protein complex assembly" evidence=NAS] [GO:0009303
"rRNA transcription" evidence=NAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016072 "rRNA metabolic process" evidence=NAS]
[GO:0010923 "negative regulation of phosphatase activity"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AB044971 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0006461 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471103 GO:GO:0000794
GO:GO:0009303 GO:GO:0010923 GO:GO:0016072 PDB:2AFF PDBsum:2AFF
CTD:84365 eggNOG:NOG244773 HOGENOM:HOG000242795 HOVERGEN:HBG057796
KO:K14838 OMA:QVRKRIT OrthoDB:EOG4MKNGX InterPro:IPR021043
Pfam:PF12196 EMBL:AK291903 EMBL:AC018737 EMBL:BC012457
EMBL:BC022990 EMBL:BC024238 IPI:IPI00154590 RefSeq:NP_115766.3
UniGene:Hs.367842 ProteinModelPortal:Q9BYG3 SMR:Q9BYG3
DIP:DIP-28134N IntAct:Q9BYG3 MINT:MINT-1031770 STRING:Q9BYG3
PhosphoSite:Q9BYG3 DMDM:71151919 SWISS-2DPAGE:Q9BYG3 PaxDb:Q9BYG3
PeptideAtlas:Q9BYG3 PRIDE:Q9BYG3 DNASU:84365
Ensembl:ENST00000285814 GeneID:84365 KEGG:hsa:84365 UCSC:uc002tnk.3
GeneCards:GC02M122484 HGNC:HGNC:17838 HPA:CAB015382 MIM:611970
neXtProt:NX_Q9BYG3 PharmGKB:PA38470 InParanoid:Q9BYG3
PhylomeDB:Q9BYG3 EvolutionaryTrace:Q9BYG3 GenomeRNAi:84365
NextBio:74141 ArrayExpress:Q9BYG3 Bgee:Q9BYG3 CleanEx:HS_MKI67IP
Genevestigator:Q9BYG3 GermOnline:ENSG00000155438 Uniprot:Q9BYG3
Length = 293
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 54/161 (33%), Positives = 101/161 (62%)
Query: 41 RKLTEEKPLVNKAT-VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGF 99
+++T+ K V+Y+ +P+ E ++ ++FSQFG + R R++R+K+TG SK + F
Sbjct: 31 KRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAF 90
Query: 100 IEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKL 159
+EF +VA++VA+ M+ YL E +L+ H +PPE VH +L++ +N +K V+R
Sbjct: 91 VEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKR-- 148
Query: 160 QNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIV 200
N+ RTL + ++ E+ K+++ RK++ GI+Y+ P ++
Sbjct: 149 YNRNRTLTQKLRMEERFKKKERLLRKKLAKKGIDYDFPSLI 189
>SGD|S000005054 [details] [associations]
symbol:NOP15 "Constituent of 66S pre-ribosomal particles"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=IMP;IPI] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0000915 "cytokinesis, actomyosin contractile
ring assembly" evidence=IMP] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000005054 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
GO:GO:0000915 EMBL:Z69382 GO:GO:0042273 GO:GO:0030687 GO:GO:0006364
eggNOG:NOG244773 GeneTree:ENSGT00390000011515 KO:K14838 EMBL:Z71386
EMBL:AY693098 PIR:S63051 RefSeq:NP_014289.1
ProteinModelPortal:P53927 SMR:P53927 DIP:DIP-4741N IntAct:P53927
MINT:MINT-551800 STRING:P53927 PaxDb:P53927 PeptideAtlas:P53927
EnsemblFungi:YNL110C GeneID:855613 KEGG:sce:YNL110C CYGD:YNL110c
HOGENOM:HOG000000855 OMA:QKHEERI OrthoDB:EOG4BK8DG NextBio:979795
Genevestigator:P53927 GermOnline:YNL110C Uniprot:P53927
Length = 220
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 57/155 (36%), Positives = 100/155 (64%)
Query: 41 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFI 100
+K ++K L + ++Y+ R+PHGF+EKE+ +F+QFG +K +R+ARNKKTG S+H+GF+
Sbjct: 78 KKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFL 137
Query: 101 EFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQ 160
EF + E A + ++M+ YLL H+LQV ++P KL++ YK RV VE+ +
Sbjct: 138 EFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYK-----YKK--RVLVEKGIT 190
Query: 161 NKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYE 195
+ L+++ K ++ ++R K++ +GIE++
Sbjct: 191 KPVKQLKDNMK------QKHEERIKKLAKSGIEFK 219
>UNIPROTKB|C9J6C5 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000242795 EMBL:AC018737 HGNC:HGNC:17838
IPI:IPI00916663 ProteinModelPortal:C9J6C5 SMR:C9J6C5 STRING:C9J6C5
Ensembl:ENST00000451734 ArrayExpress:C9J6C5 Bgee:C9J6C5
Uniprot:C9J6C5
Length = 166
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 46/126 (36%), Positives = 82/126 (65%)
Query: 75 SQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEH 134
+QFG + R R++R+K+TG SK + F+EF +VA++VA+ M+ YL E +L+ H +PPE
Sbjct: 34 TQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEK 93
Query: 135 VHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEY 194
VH +L++ +N +K V+R N+ RTL + ++ E+ K+++ RK++ GI+Y
Sbjct: 94 VHKELFKDWNIPFKQPSYPSVKR--YNRNRTLTQKLRMEERFKKKERLLRKKLAKKGIDY 151
Query: 195 ECPEIV 200
+ P ++
Sbjct: 152 DFPSLI 157
>RGD|708462 [details] [associations]
symbol:Mki67ip "Mki67 (FHA domain) interacting nucleolar
phosphoprotein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000794 "condensed nuclear
chromosome" evidence=IEA;ISO] [GO:0003723 "RNA binding"
evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0010923 "negative regulation of phosphatase
activity" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:708462 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000794 GO:GO:0010923 HSSP:Q9BYG3 CTD:84365
eggNOG:NOG244773 GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
HOVERGEN:HBG057796 KO:K14838 OrthoDB:EOG4MKNGX InterPro:IPR021043
Pfam:PF12196 EMBL:BC086585 IPI:IPI00389917 RefSeq:NP_631925.2
UniGene:Rn.20901 ProteinModelPortal:Q5RJM0 SMR:Q5RJM0 STRING:Q5RJM0
Ensembl:ENSRNOT00000061619 GeneID:246042 KEGG:rno:246042
NextBio:623295 Genevestigator:Q5RJM0 GermOnline:ENSRNOG00000025701
Uniprot:Q5RJM0
Length = 271
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 58/169 (34%), Positives = 95/169 (56%)
Query: 41 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFI 100
+K EEK +N V+Y+G +P E + + +QFG I+R R++R+K+TG S+ F F+
Sbjct: 34 KKKKEEK--LNSG-VVYLGHLPSTLSESHIYDYCAQFGDIRRFRLSRSKRTGNSRGFAFV 90
Query: 101 EFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQ 160
EF +VA++VA+ M YL E +L +P E VH L+ N + P V+R
Sbjct: 91 EFESEDVAKIVAETMDNYLFGERLLSCKFMPREKVHKDLFNQCNVPFHPPSFPAVKR--Y 148
Query: 161 NKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIVGNVMPAPKK 209
N++R + K+ + K+++ RK++ GI+Y P +V +P PKK
Sbjct: 149 NQKRGHLQMLKMEYRFKKKEKLLRKKLAKKGIDYSFPSLV---LPKPKK 194
>MGI|MGI:1915199 [details] [associations]
symbol:Mki67ip "Mki67 (FHA domain) interacting nucleolar
phosphoprotein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000794 "condensed nuclear
chromosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010923
"negative regulation of phosphatase activity" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915199 GO:GO:0005737 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000794 GO:GO:0010923 CTD:84365 eggNOG:NOG244773
GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
HOVERGEN:HBG057796 KO:K14838 OMA:QVRKRIT OrthoDB:EOG4MKNGX
InterPro:IPR021043 Pfam:PF12196 EMBL:AB056870 EMBL:AY030275
EMBL:AK019209 EMBL:AK077770 EMBL:BC058559 IPI:IPI00225912
IPI:IPI00608122 RefSeq:NP_080748.3 UniGene:Mm.280311
ProteinModelPortal:Q91VE6 SMR:Q91VE6 IntAct:Q91VE6 STRING:Q91VE6
PhosphoSite:Q91VE6 PaxDb:Q91VE6 PRIDE:Q91VE6
Ensembl:ENSMUST00000027626 Ensembl:ENSMUST00000112688 GeneID:67949
KEGG:mmu:67949 UCSC:uc007cic.2 UCSC:uc011wql.1 InParanoid:Q91VE6
NextBio:326050 Bgee:Q91VE6 Genevestigator:Q91VE6
GermOnline:ENSMUSG00000026377 Uniprot:Q91VE6
Length = 317
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 55/176 (31%), Positives = 97/176 (55%)
Query: 35 LEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQS 94
++G + ++K +N+ V+Y+G +P E + + +QFG I R R++R+K+TG S
Sbjct: 29 IQGRTKKPQQKKKEKLNRG-VVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNS 87
Query: 95 KHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQ 154
K + F+EF +VA++VA+ M YL E +L +P + VH L+ N +
Sbjct: 88 KGYAFVEFESEDVAKIVAETMDNYLFGERLLSCKFMPRKKVHKDLFSQRNALFHRPSFPA 147
Query: 155 VERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIVGNVMPAPKKI 210
V+R N++R + K+ + K+++ RK++ A GI+Y P +V +P PK I
Sbjct: 148 VKR--YNRKRGHLQMLKMEYRFKKKEKLLRKKLAAKGIDYSFPSLV---LPKPKNI 198
>WB|WBGene00011408 [details] [associations]
symbol:T04A8.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040019 "positive regulation of embryonic
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040039
"inductive cell migration" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:Z35663 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0018991
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0040039 GO:GO:0040019 eggNOG:NOG244773
GeneTree:ENSGT00390000011515 KO:K14838 PIR:T24423
RefSeq:NP_497959.1 ProteinModelPortal:Q22135 SMR:Q22135
STRING:Q22135 PaxDb:Q22135 EnsemblMetazoa:T04A8.6 GeneID:175614
KEGG:cel:CELE_T04A8.6 UCSC:T04A8.6 CTD:175614 WormBase:T04A8.6
HOGENOM:HOG000021353 InParanoid:Q22135 OMA:GYLMFEQ NextBio:888912
Uniprot:Q22135
Length = 307
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 59/182 (32%), Positives = 98/182 (53%)
Query: 39 PGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFG 98
P ++ +K + K V+ I RIP GF+EKE+ +F QFG + R+R+ARN++TG K +
Sbjct: 17 PQKQDKVQKKQLKKIYVVKIKRIPFGFFEKELLGYFRQFGNVLRIRVARNRRTGNHKGWA 76
Query: 99 FIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWR-G----FNPRYKPVDRV 153
++ F++ VAE+ A++M+GYL+FE L ++ PE + PK R G P Y + +
Sbjct: 77 YVGFDNKAVAEIAAESMNGYLMFEQRLGCTVMKPELI-PKAMRHGPLLVMRPSYLGIAKK 135
Query: 154 Q-VERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIVGNVMPAPKKIKF 212
+ R + + KK V+ + K K+++ GI Y+ + G KK+
Sbjct: 136 DTIARNNTTGKNDVINAKKRVQNL----NKTLKKLQNMGINYDF-SVSGTPRTPLKKVID 190
Query: 213 NE 214
NE
Sbjct: 191 NE 192
>FB|FBgn0038989 [details] [associations]
symbol:CG6937 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00390000011515 KO:K14838 FlyBase:FBgn0038989
RefSeq:NP_651066.2 UniGene:Dm.6006 ProteinModelPortal:Q9VCY1
SMR:Q9VCY1 IntAct:Q9VCY1 MINT:MINT-852149 STRING:Q9VCY1
PRIDE:Q9VCY1 EnsemblMetazoa:FBtr0084266 GeneID:42662
KEGG:dme:Dmel_CG6937 UCSC:CG6937-RA InParanoid:Q9VCY1 OMA:MDNYLMF
PhylomeDB:Q9VCY1 GenomeRNAi:42662 NextBio:829945
ArrayExpress:Q9VCY1 Bgee:Q9VCY1 Uniprot:Q9VCY1
Length = 356
Score = 224 (83.9 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 39/92 (42%), Positives = 63/92 (68%)
Query: 42 KLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIE 101
K +KP + V+ + +PHGF+E++++ +F QFG + R+R+AR+ +TG SK + F+E
Sbjct: 39 KARPQKPKGPERGVVIVKHLPHGFFEQQLRQYFRQFGRVLRVRLARSLRTGNSKGYAFVE 98
Query: 102 FNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133
F PEVA+V AD M YL+F+ +++ IPPE
Sbjct: 99 FEYPEVAKVAADTMDNYLMFQKVVKATYIPPE 130
>DICTYBASE|DDB_G0275885 [details] [associations]
symbol:DDB_G0275885 "MKI67 FHA domain-interacting
nucleolar phosphoprotein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0275885 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013 eggNOG:NOG244773
KO:K14838 RefSeq:XP_643547.2 ProteinModelPortal:Q86H55
EnsemblProtists:DDB0217706 GeneID:8620129 KEGG:ddi:DDB_G0275885
InParanoid:Q86H55 OMA:STILIRE Uniprot:Q86H55
Length = 269
Score = 160 (61.4 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 40/128 (31%), Positives = 65/128 (50%)
Query: 44 TEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFN 103
++E L K + + I +P GFYE E+ FF QFG IK +R+ R +G+ F+ F
Sbjct: 66 SKEYVLGVKGSTILIREVPKGFYETEIYKFFKQFGDIKCVRVDRTL-SGKFAKCAFVRFF 124
Query: 104 DPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVER-KLQNK 162
D EVA++ +AM+GY++F L + ++ H F PR + + L N
Sbjct: 125 DAEVAKIAKEAMNGYIMFGKKLDISIMDGWVPHQS---SFCPRELLLSATNIHMDSLHNA 181
Query: 163 ERTLEEHK 170
+ ++E K
Sbjct: 182 SKRIKEEK 189
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 40 GRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGF 99
G+ +++ V LY+G +P+ +E E++ F +FG + +R+ R++KTG+ K FGF
Sbjct: 50 GKAQADDEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGF 109
Query: 100 IEFND 104
+E ++
Sbjct: 110 VEMSE 114
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 40 GRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGF 99
G+ +++ V LY+G +P+ +E E++ F +FG + +R+ R++KTG+ K FGF
Sbjct: 50 GKAQADDEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGF 109
Query: 100 IEFND 104
+E ++
Sbjct: 110 VEMSE 114
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+Y+G +P+ E ++ +FS+FGAI+ ++I RN +TG+SK + F+ + P+ A DA
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA- 104
Query: 116 HG 117
HG
Sbjct: 105 HG 106
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+Y+G +P+ E ++ +FS+FGAI+ ++I RN +TG+SK + F+ + P+ A DA
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA- 104
Query: 116 HG 117
HG
Sbjct: 105 HG 106
>DICTYBASE|DDB_G0288291 [details] [associations]
symbol:DDB_G0288291 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0288291 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000109 eggNOG:COG0724
RefSeq:XP_636795.1 ProteinModelPortal:Q54J52
EnsemblProtists:DDB0187876 GeneID:8626552 KEGG:ddi:DDB_G0288291
InParanoid:Q54J52 OMA:NMHESEI ProtClustDB:CLSZ2429905
Uniprot:Q54J52
Length = 123
Score = 121 (47.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 30/92 (32%), Positives = 48/92 (52%)
Query: 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAE 109
VNK VLY+G I ++A F FG I + + + KT + K FGFI+F PE A
Sbjct: 11 VNKKNVLYVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFIDFELPEDAA 70
Query: 110 VVADAMHGYLLFEHILQVHLIPP-EHVHPKLW 140
D MH +F +++ + P ++++ +W
Sbjct: 71 DALDNMHESEIFGRVIKCSIAKPIKNLNKAVW 102
>UNIPROTKB|I3LDD0 [details] [associations]
symbol:I3LDD0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 InterPro:IPR021043 Pfam:PF12196
Ensembl:ENSSSCT00000023542 Uniprot:I3LDD0
Length = 257
Score = 131 (51.2 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 34/94 (36%), Positives = 55/94 (58%)
Query: 46 EKPLVNKAT--VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFN 103
++P K T V+Y+G +P YE +++A+FSQFG + RLR++R+KK G +
Sbjct: 1 QQPEKQKLTPGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKKGVEREL------ 54
Query: 104 DPEVAEVVADAMHGYLLFEHILQVHLIPPE-HVH 136
+PE A V A ++ +LL + LQ + + HVH
Sbjct: 55 EPETA-VRAKSL--FLLMFYCLQKKKMTTKPHVH 85
>DICTYBASE|DDB_G0294559 [details] [associations]
symbol:DDB_G0294559 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0294559 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13107
EMBL:AAFI02000058 OMA:VFSQNRY RefSeq:XP_001134546.1
ProteinModelPortal:Q1ZXF8 EnsemblProtists:DDB0232419 GeneID:8624369
KEGG:ddi:DDB_G0294559 ProtClustDB:CLSZ2847454 Uniprot:Q1ZXF8
Length = 348
Score = 112 (44.5 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+Y+G + + E ++ A FSQ+G I + RNK+TG+S+ F F+ ++ + + D +
Sbjct: 35 IYVGGLNYDLNEGDVIAIFSQYGEISECNLVRNKETGRSQGFCFVGYDQQKSTVLAVDNL 94
Query: 116 HGYLLFEHILQVHLIPPEHVHPK 138
+G L ++V + ++ PK
Sbjct: 95 NGINLLGKTIKVDHVK-DYKRPK 116
Score = 60 (26.2 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 156 ERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPE 198
E+K + K+R LE KKL +K KR++KR++R E E PE
Sbjct: 156 EKKKEKKKRKLE--KKLKKK-QKREEKRKRR------ENETPE 189
Score = 56 (24.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 12/55 (21%), Positives = 29/55 (52%)
Query: 141 RGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYE 195
R + K + + +RK + E + K+ ++K LK+D+K ++ + +++E
Sbjct: 164 RKLEKKLKKKQKREEKRKRRENETPEQREKRKMDKQLKKDEKLLRKQDKKRLKFE 218
>CGD|CAL0002199 [details] [associations]
symbol:orf19.7097 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199 GO:GO:0000166
GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000024
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 RefSeq:XP_720388.1
RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1 SMR:Q5AFH1
STRING:Q5AFH1 GeneID:3637979 GeneID:3703864 KEGG:cal:CaO19.7097
KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 124 (48.7 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 44 TEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFN 103
T+E+ A +YIG + +G E+Q FS G + R+ I NK TGQ K F ++EF
Sbjct: 53 TDEEKRDTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFA 112
Query: 104 DPEVAEVVADAMHGYLLFEHILQV 127
D + + G E L+V
Sbjct: 113 DTDAVNKAVATLDGSTFRERQLKV 136
>UNIPROTKB|Q5AFH1 [details] [associations]
symbol:SGN12 "Putative uncharacterized protein SGN12"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199
GO:GO:0000166 GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465
RefSeq:XP_720388.1 RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1
SMR:Q5AFH1 STRING:Q5AFH1 GeneID:3637979 GeneID:3703864
KEGG:cal:CaO19.7097 KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 124 (48.7 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 44 TEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFN 103
T+E+ A +YIG + +G E+Q FS G + R+ I NK TGQ K F ++EF
Sbjct: 53 TDEEKRDTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFA 112
Query: 104 DPEVAEVVADAMHGYLLFEHILQV 127
D + + G E L+V
Sbjct: 113 DTDAVNKAVATLDGSTFRERQLKV 136
>WB|WBGene00016245 [details] [associations]
symbol:C30B5.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0016477
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 EMBL:FO080719
HSSP:Q14103 GeneTree:ENSGT00600000084414 PIR:T15706
RefSeq:NP_495237.1 UniGene:Cel.15758 ProteinModelPortal:Q18318
SMR:Q18318 DIP:DIP-26943N IntAct:Q18318 MINT:MINT-1092197
STRING:Q18318 PaxDb:Q18318 EnsemblMetazoa:C30B5.4 GeneID:183040
KEGG:cel:CELE_C30B5.4 UCSC:C30B5.4 CTD:183040 WormBase:C30B5.4
InParanoid:Q18318 OMA:WKVIRER NextBio:919704 Uniprot:Q18318
Length = 302
Score = 130 (50.8 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 40/147 (27%), Positives = 78/147 (53%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+YIG + + E ++ A FSQ+G + + + R+K TG+SK F F+ + D + D
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNF 99
Query: 116 HGYLLFEHILQV-HL----IPP-----EHVHPKLWR-GFNPRYKPVDR----VQV-ERKL 159
+G L + +++V H+ +P + +LW G P KPV R ++V E+++
Sbjct: 100 NGISLHKRMIRVDHVEEYKVPKYKEDADDETKRLWEEGCAP--KPVMREAAPMEVQEQRI 157
Query: 160 QNKERTLEEHKKLVEKILKRDQKRRKR 186
+ + L + + E++LK+ +K +K+
Sbjct: 158 KKAKEVLLDIGDVDEELLKKIKKDKKK 184
>UNIPROTKB|I3LAS7 [details] [associations]
symbol:I3LAS7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 InterPro:IPR021043 Pfam:PF12196
Ensembl:ENSSSCT00000029449 Uniprot:I3LAS7
Length = 250
Score = 128 (50.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 34/100 (34%), Positives = 56/100 (56%)
Query: 46 EKPLVNKAT--VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFN 103
++P K T V+Y+G +P YE +++A+FSQFG + RLR++R+KK G +
Sbjct: 1 QQPEKQKLTPGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKKGVEREL------ 54
Query: 104 DPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGF 143
+PE A V A ++ +LL + LQ VH +++ F
Sbjct: 55 EPETA-VRAKSL--FLLMFYCLQKKKTKVGQVHREVFCWF 91
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 112 (44.5 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 22/91 (24%), Positives = 49/91 (53%)
Query: 39 PGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFG 98
P +E++ + LY+G +P+ E ++ F++FG + +R+ ++K+TG+ + FG
Sbjct: 49 PTLSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFG 108
Query: 99 FIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129
F+ + A+ DA++ + L+V +
Sbjct: 109 FVVIAASQ-AQTAIDALNEKEYMQRTLKVRI 138
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 112 (44.5 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 22/91 (24%), Positives = 49/91 (53%)
Query: 39 PGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFG 98
P +E++ + LY+G +P+ E ++ F++FG + +R+ ++K+TG+ + FG
Sbjct: 49 PTLSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFG 108
Query: 99 FIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129
F+ + A+ DA++ + L+V +
Sbjct: 109 FVVIAASQ-AQTAIDALNEKEYMQRTLKVRI 138
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 111 (44.1 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+Y+G P E+E+ FFS G I +RI +++TG+ + F FIEF + A+ + M
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 116 HGYLLFEHILQVHL 129
+G L+V+L
Sbjct: 67 NGAEFNGRPLRVNL 80
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 110 (43.8 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 41 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFI 100
RK+T + NK +Y+G + + E+Q+FF Q+G I+ ++ +++TG+SK F FI
Sbjct: 11 RKMTMSQ---NK---IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFI 64
Query: 101 EFNDPEVAEVVADAMHGYLLFEHILQVHL 129
+ + A+ +G L ++V++
Sbjct: 65 TYGTQDAAQEAVSKANGIDLQGRKIRVNI 93
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 110 (43.8 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 41 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFI 100
RK+T + NK +Y+G + + E+Q+FF Q+G I+ ++ +++TG+SK F FI
Sbjct: 11 RKMTMSQ---NK---IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFI 64
Query: 101 EFNDPEVAEVVADAMHGYLLFEHILQVHL 129
+ + A+ +G L ++V++
Sbjct: 65 TYGTQDAAQEAVSKANGIDLQGRKIRVNI 93
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 109 (43.4 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+Y+G P E ++ +FSQ G + +RI +++TG+ + F F+EF + A+ D
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 116 HGYLLFEHILQVHL 129
+G L+V+L
Sbjct: 66 NGVDFNGRALRVNL 79
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 109 (43.4 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+Y+G P E ++ +FSQ G + +RI +++TG+ + F F+EF + A+ D
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 116 HGYLLFEHILQVHL 129
+G L+V+L
Sbjct: 66 NGVDFNGRALRVNL 79
>UNIPROTKB|I3LKX8 [details] [associations]
symbol:I3LKX8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000011515
InterPro:IPR021043 Pfam:PF12196 Ensembl:ENSSSCT00000030296
Uniprot:I3LKX8
Length = 260
Score = 125 (49.1 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 46 EKPLVNKAT--VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFN 103
++P K T V+Y+G +P YE +++A+FSQFG + RLR++R+KK G +
Sbjct: 1 QQPEKQKLTPGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKKGVEREL------ 54
Query: 104 DPEVAEVVADAMHGYLLFEHILQ 126
+PE A V A ++ +LL + LQ
Sbjct: 55 EPETA-VRAKSL--FLLMFYCLQ 74
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 124 (48.7 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 35/120 (29%), Positives = 55/120 (45%)
Query: 40 GRKLTEEKPLVN--KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHF 97
GR + PL N T L + +P E E+ FS+FG I++ +I R+++TG S +
Sbjct: 25 GRPVDPPPPLPNLRMKTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCY 84
Query: 98 GFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP---EHVHPKLWRGFNPRYKPVDRVQ 154
GF+++ A + M GY L+V P E L+ G P Y +V+
Sbjct: 85 GFVDYVSERQAAAAVNGMDGYETRGKRLKVAFARPSEYESTSSSLYVGNLPTYMDEKKVR 144
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 108 (43.1 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+IG + E+ ++ FS FG + +RIA +K +G+S+ FGF++F + A DAM
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 116 HGYLLFEHILQV 127
G L L++
Sbjct: 103 DGKGLLGRPLRI 114
>UNIPROTKB|G4NKC1 [details] [associations]
symbol:MGG_03086 "U2 snRNP component IST3" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001237 KO:K13107 RefSeq:XP_003720587.1
ProteinModelPortal:G4NKC1 EnsemblFungi:MGG_03086T0 GeneID:2682639
KEGG:mgr:MGG_03086 Uniprot:G4NKC1
Length = 330
Score = 105 (42.0 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 19/72 (26%), Positives = 43/72 (59%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+Y G + E ++ FSQ+G L++ R+K+TG+S+ FG++++ D ++ D +
Sbjct: 35 VYFGGLDDTLSEGDIITIFSQYGEPVFLKLVRDKETGKSRGFGWLKYEDQRSTDLAVDNL 94
Query: 116 HGYLLFEHILQV 127
G ++ + +++V
Sbjct: 95 GGAVIKDRMMRV 106
Score = 59 (25.8 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 162 KERTLEEHKKLVEKILKRDQKRRKR 186
KE +EE KK VE+ L R+QK+ R
Sbjct: 174 KEFLIEEKKKEVEEALTREQKKSSR 198
Score = 42 (19.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 146 RYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKR 186
R K D + R + RT +H++ + D+KRRKR
Sbjct: 198 RRKDKDGSRSSRH-HHHHRTSRKHREESDDEAGSDRKRRKR 237
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 119 (46.9 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 21/62 (33%), Positives = 40/62 (64%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+IG + E+ ++ FS++G I + +ARN++T +S+ FGF+ F +P+ A+ + M
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 116 HG 117
+G
Sbjct: 67 NG 68
>ASPGD|ASPL0000074275 [details] [associations]
symbol:AN4665 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000080 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 OrthoDB:EOG441TN4 RefSeq:XP_662269.1
ProteinModelPortal:Q5B465 STRING:Q5B465
EnsemblFungi:CADANIAT00005768 GeneID:2872460 KEGG:ani:AN4665.2
OMA:VFSQNRY Uniprot:Q5B465
Length = 279
Score = 118 (46.6 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+YIG +P E ++ FSQ+G + + R+K+TG+S+ F F+++ D ++ D +
Sbjct: 35 IYIGGLPFDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRGFAFLKYEDQRSTDLAVDNL 94
Query: 116 HGYLLFEHILQV 127
G + +L+V
Sbjct: 95 GGATVLGRVLRV 106
Score = 39 (18.8 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 162 KERTLEEHKKLVEKILKRDQKRRK 185
KE +EE K+ V + L+++ ++ +
Sbjct: 182 KEYLIEEKKEEVARALEKEARKER 205
>UNIPROTKB|K7EP16 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC020931 PANTHER:PTHR10352 HGNC:HGNC:3274
Ensembl:ENST00000593054 Uniprot:K7EP16
Length = 118
Score = 107 (42.7 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 67 EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-IL 125
E ++Q F FG+I R+ +A++K TGQSK F FI F+ E A + G+ ++H IL
Sbjct: 50 ETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDHLIL 108
Query: 126 QVHLIPP 132
V P
Sbjct: 109 NVEWAKP 115
>TAIR|locus:2177033 [details] [associations]
symbol:AT5G12190 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 EMBL:AB007727 HOGENOM:HOG000276232 EMBL:BT002829
EMBL:BT004430 EMBL:AY088716 IPI:IPI00520700 RefSeq:NP_196780.1
UniGene:At.32166 ProteinModelPortal:Q9FMP4 SMR:Q9FMP4 IntAct:Q9FMP4
STRING:Q9FMP4 PaxDb:Q9FMP4 PRIDE:Q9FMP4 EnsemblPlants:AT5G12190.1
GeneID:831092 KEGG:ath:AT5G12190 TAIR:At5g12190 InParanoid:Q9FMP4
KO:K12833 OMA:YQSTKAF PhylomeDB:Q9FMP4 ProtClustDB:CLSN2686825
Genevestigator:Q9FMP4 GermOnline:AT5G12190 Uniprot:Q9FMP4
Length = 124
Score = 107 (42.7 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 35/119 (29%), Positives = 59/119 (49%)
Query: 44 TEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFN 103
T P VN+ VLY+ +P +EM F ++GAI+++RI +K T K F+ +
Sbjct: 11 TRLPPEVNR--VLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKAT---KGTAFVVYE 65
Query: 104 DPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNK 162
D A+ D + G+ ++ +LI + H K+ + F+ + K D + KLQ K
Sbjct: 66 DIYDAKNAVDHLSGF----NVANRYLIVLYYQHAKMSKKFDQK-KSEDEIT---KLQEK 116
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 115 (45.5 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 30/101 (29%), Positives = 56/101 (55%)
Query: 43 LTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEF 102
L +K ++ +V Y+G + + +E+Q+ F+ G++ R+ I +K TG K F +IEF
Sbjct: 45 LRNDKESIDAQSV-YVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
Query: 103 NDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVH-PKLWRG 142
++P + A ++G +L E L+V P+ + P + RG
Sbjct: 104 SEPSLVPN-ALLLNGSMLHERPLKV---TPKRTNVPGMSRG 140
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 127 (49.8 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 27/95 (28%), Positives = 53/95 (55%)
Query: 36 EGGP-GRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQS 94
+GGP G K + + + + + L++ IP+ F + ++ F Q+G + ++ +K TG S
Sbjct: 386 QGGPMGNK--KNQSVGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVS 443
Query: 95 KHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129
K FGF+ +++P A + +HG ++ L+V L
Sbjct: 444 KGFGFVSYDNPASANLAISNLHGQMMAGKKLKVSL 478
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 112 (44.5 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G + E+ ++ FS FG I + + ++++T +S+ FGFI F +PE A V AM
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 116 HG 117
+G
Sbjct: 68 NG 69
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 129 (50.5 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++ +P+ E ++Q F ++G + +++ +KKTG K F +EF PE A A+
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSAL 340
Query: 116 HGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYK--PVDRVQVERKLQNKERTLEEHK 170
GY+ ++ H++P + K + P + ++ E K + K+++ +E K
Sbjct: 341 DGYVFKGRMM--HILPGDEKRTKEGEEESEVVPDDPDNPLKAEAKKEKKKKSFKEEK 395
>SGD|S000001323 [details] [associations]
symbol:SNP1 "Component of U1 snRNP required for mRNA splicing
via spliceosome" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IPI] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030619 "U1 snRNA binding"
evidence=IPI] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0005685
"U1 snRNP" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000001323 GO:GO:0000166
EMBL:BK006942 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
EMBL:Z38060 GO:GO:0000243 eggNOG:COG0724 GO:GO:0071004
GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 HOGENOM:HOG000000970 OrthoDB:EOG4HMNKR
GO:GO:0030619 EMBL:X59986 EMBL:AY558085 PIR:S16815
RefSeq:NP_012203.1 ProteinModelPortal:Q00916 SMR:Q00916
DIP:DIP-663N IntAct:Q00916 MINT:MINT-397124 STRING:Q00916
PaxDb:Q00916 PeptideAtlas:Q00916 EnsemblFungi:YIL061C GeneID:854749
KEGG:sce:YIL061C CYGD:YIL061c OMA:ETSSSAY NextBio:977479
Genevestigator:Q00916 GermOnline:YIL061C Uniprot:Q00916
Length = 300
Score = 123 (48.4 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDP 105
++IGR+P+ E E+Q +F +FG I+++RI ++K T +SK + FI F DP
Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDP 158
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 105 (42.0 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G +P +++Q S+FG + R+ K TG+S+ +GFIE D E AE +
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFMTGL 63
Query: 116 HG 117
+G
Sbjct: 64 NG 65
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 105 (42.0 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G +P +++Q S+FG + R+ K TG+S+ +GFIE D E AE +
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFMTGL 63
Query: 116 HG 117
+G
Sbjct: 64 NG 65
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 105 (42.0 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 17/62 (27%), Positives = 39/62 (62%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+Y+G +P+ E+E+ +F+ G + +RI +++TG+ + F F+EF++ A+ + +
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 116 HG 117
+G
Sbjct: 68 NG 69
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 123 (48.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+++G I + E +++ FS+ G + +++ +++TG+ K +GFIEF D + AEV +
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 116 HGYLLFEHILQV 127
+GY L IL+V
Sbjct: 80 NGYELSGRILRV 91
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 104 (41.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 31/109 (28%), Positives = 52/109 (47%)
Query: 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEV 107
P V T L + + + ++ F ++G + + I R++ T +S+ F F+ F+D
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 108 AEVVADAMHGYLLFEHILQVHLI----PPEHVHPKLWRGFNPRYKPVDR 152
AE DAM G +L L+V + PP+ H + RG PR + R
Sbjct: 68 AEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSR--RGPPPRSRSRSR 114
>TAIR|locus:2023903 [details] [associations]
symbol:ATE1 "ATPase E1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 UniGene:At.66943
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK228412 IPI:IPI00541371
RefSeq:NP_563931.2 ProteinModelPortal:Q0WRA3 SMR:Q0WRA3
STRING:Q0WRA3 PaxDb:Q0WRA3 PRIDE:Q0WRA3 EnsemblPlants:AT1G13690.1
GeneID:837930 KEGG:ath:AT1G13690 TAIR:At1g13690 InParanoid:Q0WRA3
OMA:AQPIWAD PhylomeDB:Q0WRA3 ProtClustDB:CLSN2690943
Genevestigator:Q0WRA3 Uniprot:Q0WRA3
Length = 177
Score = 115 (45.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 38/143 (26%), Positives = 67/143 (46%)
Query: 45 EEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFND 104
+++ + K T LY+G + E + A F FG IK ++ ++ + + FGF+ F +
Sbjct: 5 QQQQAMQKNT-LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLE 63
Query: 105 PEVAEVVADAMHGYLLFEHILQVHLIPPEHVH--PKLWRGFNPRYKPVDRVQVERKLQNK 162
E A D M G L+ +L V+ PE + + W +P + D ER+ Q K
Sbjct: 64 REDASAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAA-HPLWADAD-TWFERQQQEK 121
Query: 163 E--RTLEEHKKLVEKILKRDQKR 183
E + E+K +E + +K+
Sbjct: 122 EILKMQAENKAAMETAEELHRKK 144
>GENEDB_PFALCIPARUM|PF14_0656 [details] [associations]
symbol:PF14_0656 "U2 snRNP auxiliary factor,
putative" species:5833 "Plasmodium falciparum" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AE014187 GO:GO:0000398 HSSP:P26368 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_001348830.1 ProteinModelPortal:Q8IKE9
IntAct:Q8IKE9 MINT:MINT-1638107 EnsemblProtists:PF14_0656:mRNA
GeneID:812238 KEGG:pfa:PF14_0656 EuPathDB:PlasmoDB:PF3D7_1468800
HOGENOM:HOG000212579 OMA:EYDERYQ ProtClustDB:CLSZ2515245
Uniprot:Q8IKE9
Length = 833
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 42 KLTEEKPLVNKATV-----LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKH 96
KL KP+ K + LYI +PH +++++ QFG +K I ++ TG +K
Sbjct: 572 KLRPSKPVNVKTSSDEENRLYIQNLPHDLKDEQIKDLLEQFGDLKAFNIIKDLNTGLNKG 631
Query: 97 FGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127
+GF E+ D ++ A++G++ ++IL V
Sbjct: 632 YGFFEYEDSSCTQLAIHALNGFVCGQNILNV 662
>UNIPROTKB|Q8IKE9 [details] [associations]
symbol:PF14_0656 "U2 snRNP auxiliary factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AE014187 GO:GO:0000398 HSSP:P26368 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_001348830.1 ProteinModelPortal:Q8IKE9
IntAct:Q8IKE9 MINT:MINT-1638107 EnsemblProtists:PF14_0656:mRNA
GeneID:812238 KEGG:pfa:PF14_0656 EuPathDB:PlasmoDB:PF3D7_1468800
HOGENOM:HOG000212579 OMA:EYDERYQ ProtClustDB:CLSZ2515245
Uniprot:Q8IKE9
Length = 833
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 42 KLTEEKPLVNKATV-----LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKH 96
KL KP+ K + LYI +PH +++++ QFG +K I ++ TG +K
Sbjct: 572 KLRPSKPVNVKTSSDEENRLYIQNLPHDLKDEQIKDLLEQFGDLKAFNIIKDLNTGLNKG 631
Query: 97 FGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127
+GF E+ D ++ A++G++ ++IL V
Sbjct: 632 YGFFEYEDSSCTQLAIHALNGFVCGQNILNV 662
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 122 (48.0 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 38/143 (26%), Positives = 67/143 (46%)
Query: 46 EKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDP 105
E P ++ L++G + + + + F Q G ++ + N++T QS+ FGF+ +
Sbjct: 142 EFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201
Query: 106 EVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPR-YKPVDRVQVER---KLQN 161
+ AE + + Y L +L V+ P P+ R PR Y+P RV V + N
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPE--RA--PRVYEPAFRVYVGNLPWDVDN 257
Query: 162 K--ERTLEEHKKLVEKILKRDQK 182
E+ EH K+VE + D++
Sbjct: 258 GRLEQLFSEHGKVVEARVVYDRE 280
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 116 (45.9 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E+++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 99 TLNGLRLQTKTIKVSYARP 117
>UNIPROTKB|E1C131 [details] [associations]
symbol:E1C131 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02067637 EMBL:AADN02067638
EMBL:AADN02067639 EMBL:AADN02067640 EMBL:AADN02067641
EMBL:AADN02067642 EMBL:AADN02067643 EMBL:AADN02067644
EMBL:AADN02067645 EMBL:AADN02067646 EMBL:AADN02067647
EMBL:AADN02067648 EMBL:AADN02067649 EMBL:AADN02067650
EMBL:AADN02067651 EMBL:AADN02067652 EMBL:AADN02067653
EMBL:AADN02067654 EMBL:AADN02067655 EMBL:AADN02067656
EMBL:AADN02067657 EMBL:AADN02067658 EMBL:AADN02067659
IPI:IPI00822398 ProteinModelPortal:E1C131
Ensembl:ENSGALT00000029259 OMA:YCHRESA Uniprot:E1C131
Length = 123
Score = 103 (41.3 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 35 LEGGPGRKLTEEKPLVNKATV-LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ 93
L PG T P+ + + L+IG+IP EK+++ F +FG I L + +++ TG
Sbjct: 34 LNHSPGNPSTI--PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGM 91
Query: 94 SKHFGFIEFNDPEVAEVVADAMH 116
K F+ + + E A A+H
Sbjct: 92 HKGCAFLTYCERESALKAQSALH 114
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 103 (41.3 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 30/103 (29%), Positives = 50/103 (48%)
Query: 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEV 107
P V T L + + + ++ F ++G + + I R++ T +S+ F F+ F+D
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 108 AEVVADAMHGYLLFEHILQVHLI----PPEHVHPKLWRGFNPR 146
AE DAM G +L L+V + PP+ H + RG PR
Sbjct: 68 AEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSR--RGPPPR 108
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 103 (41.3 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 20/79 (25%), Positives = 43/79 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + + + +++ F+ +G +K ++ ++ TG+S+ FGF+E + A+ +
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64
Query: 116 HGYLLFEHILQVHLI-PPE 133
+G + L V+ PPE
Sbjct: 65 NGKEMDGRNLMVNEARPPE 83
>TAIR|locus:2075676 [details] [associations]
symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
Uniprot:Q9SD61
Length = 352
Score = 122 (48.0 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEV 110
N A V Y+G IP E ++ A FSQ+G I + + R+K TG+SK F F+ + D +
Sbjct: 34 NSAYV-YVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTIL 92
Query: 111 VADAMHGYLLFEHILQV 127
D ++G L+ ++V
Sbjct: 93 AVDNLNGALVLGRTIKV 109
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 123 (48.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++IG + E + + FSQ G + ++I RNK+TGQS+ +GF+EFN AE V +
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 145
Query: 116 HGYLL 120
+G ++
Sbjct: 146 NGTMM 150
>UNIPROTKB|G5E5I0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
Length = 338
Score = 121 (47.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 46/188 (24%), Positives = 86/188 (45%)
Query: 35 LEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQS 94
+E G K++ + A + ++G +P+ E ++ FSQ+G I + + R+KKTG+S
Sbjct: 18 VELGVAEKVSWHNEYKDSAWI-FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKS 76
Query: 95 KHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV-HL----IPPE-----HVHPKLW-RGF 143
K F F+ + D + D +G + ++V H+ +P + V +L RG
Sbjct: 77 KGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNYRLPEDSEEMDEVTRELQERGC 136
Query: 144 NPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIVGNV 203
P + ++ ++HKK +K K +K++K E G E + + +
Sbjct: 137 GTHTPPPSSSEGSED----DKPTKKHKK--DK--KEKKKKKKDKEKTGREVQAEQPASSS 188
Query: 204 MPAPKKIK 211
+P K IK
Sbjct: 189 LPRSKMIK 196
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 109 (43.4 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G + E+ ++ FS FG I + + ++++T +S+ FGFI F +PE A V AM
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 116 HG 117
+G
Sbjct: 68 NG 69
>UNIPROTKB|F1S8E8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:DGMKDLD EMBL:FP016150
EMBL:FP565386 Ensembl:ENSSSCT00000014721 Uniprot:F1S8E8
Length = 420
Score = 122 (48.0 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FG I ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 337 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAM 396
Query: 116 HGYLLFEHILQVHLIPPEHV-HP 137
+G+ + L+V L P+ HP
Sbjct: 397 NGFQIGMKRLKVQLKRPKDPGHP 419
>ZFIN|ZDB-GENE-030131-6251 [details] [associations]
symbol:ppil4 "peptidylprolyl isomerase
(cyclophilin)-like 4" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6251 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 HOVERGEN:HBG057731 HSSP:Q27450 EMBL:BC056814
IPI:IPI00505393 UniGene:Dr.80688 ProteinModelPortal:Q6PGV9
PRIDE:Q6PGV9 InParanoid:Q6PGV9 ArrayExpress:Q6PGV9 Bgee:Q6PGV9
Uniprot:Q6PGV9
Length = 454
Score = 122 (48.0 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/110 (29%), Positives = 55/110 (50%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
VL++ ++ +++++ FS+FG IK I R+ KTG+S + FIEF E E
Sbjct: 241 VLFVCKLNPVTTDEDLEIIFSRFGLIKCCEIIRDWKTGESLCYAFIEFEKEEDCEKAYFK 300
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKER 164
M L+ + ++H+ + V W+G +Y D E+ L NK +
Sbjct: 301 MDNVLIDDR--RIHVDFSQSVSKIKWKGKGGKYTKDDFKAYEKDLDNKAK 348
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 123 (48.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 24/74 (32%), Positives = 45/74 (60%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G I E ++Q+ F FG ++ +++ +++ TG+S+ +GF++F DP A + M
Sbjct: 275 LYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQAREALEKM 333
Query: 116 HGYLLFEHILQVHL 129
+GY L ++V L
Sbjct: 334 NGYDLGGRAIRVGL 347
>FB|FBgn0037602 [details] [associations]
symbol:CG8021 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046331 "lateral inhibition" evidence=IMP]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0046331 HSSP:Q14103
GeneTree:ENSGT00390000008624 EMBL:BT031072 EMBL:BT032713
RefSeq:NP_649808.1 UniGene:Dm.36782 SMR:Q9VHP3
EnsemblMetazoa:FBtr0081878 GeneID:41021 KEGG:dme:Dmel_CG8021
UCSC:CG8021-RA FlyBase:FBgn0037602 InParanoid:Q9VHP3 OMA:HVANAEV
OrthoDB:EOG4M0CJB GenomeRNAi:41021 NextBio:821758 Uniprot:Q9VHP3
Length = 91
Score = 101 (40.6 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFN 103
V + L++G +P KE++ +FS++G + + +++ G SKH+GF+ F+
Sbjct: 6 VRSSYKLFVGNLPWTIGSKELRTYFSKYGHVANAEVVFDRQLGLSKHYGFVVFS 59
>UNIPROTKB|B3KWE6 [details] [associations]
symbol:BRUNOL6 "cDNA FLJ42868 fis, clone BRHIP2021615,
highly similar to Homo sapiens bruno-like 6, RNA binding protein,
mRNA" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471082 HOVERGEN:HBG107646 HOGENOM:HOG000004754 EMBL:AC009690
UniGene:Hs.348342 HGNC:HGNC:14059 EMBL:AK124858 IPI:IPI01012509
SMR:B3KWE6 STRING:B3KWE6 Ensembl:ENST00000539635 Uniprot:B3KWE6
Length = 342
Score = 120 (47.3 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FGA+ ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 259 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAM 318
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 319 NGFQIGMKRLKVQLKRPK 336
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 122 (48.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FG I ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAM 461
Query: 116 HGYLLFEHILQVHLIPPEHV-HP 137
+G+ + L+V L P+ HP
Sbjct: 462 NGFQIGMKRLKVQLKRPKDPGHP 484
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 122 (48.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FG I ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 461
Query: 116 HGYLLFEHILQVHLIPPEHV-HP 137
+G+ + L+V L P+ HP
Sbjct: 462 NGFQIGMKRLKVQLKRPKDPGHP 484
>UNIPROTKB|F1MD42 [details] [associations]
symbol:F1MD42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:DAAA02019657 EMBL:DAAA02019658
EMBL:DAAA02019659 EMBL:DAAA02019660 EMBL:DAAA02019661
IPI:IPI00713955 ProteinModelPortal:F1MD42
Ensembl:ENSBTAT00000029023 OMA:PAQSPTM Uniprot:F1MD42
Length = 489
Score = 122 (48.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FG I ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 406 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAM 465
Query: 116 HGYLLFEHILQVHLIPPEHV-HP 137
+G+ + L+V L P+ HP
Sbjct: 466 NGFQIGMKRLKVQLKRPKDPGHP 488
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 111 (44.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 37/119 (31%), Positives = 56/119 (47%)
Query: 34 PLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ 93
P GP EEK + A +Y+G + +G +E++A F G++ R+ I +K +G
Sbjct: 25 PGNAGPVIMSIEEK-MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGH 83
Query: 94 SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLW---RGF-NPRYK 148
K F +IEF+D E V LF Q+ +IP P + RGF RY+
Sbjct: 84 PKGFAYIEFSDKE--SVRTSLALDESLFRG-RQIKVIPKRTNRPGISTTDRGFPRARYR 139
>TAIR|locus:2176222 [details] [associations]
symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
Uniprot:Q9LU44
Length = 804
Score = 124 (48.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 33/104 (31%), Positives = 50/104 (48%)
Query: 39 PGRKLTEEKPLVNK--ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKH 96
PG T KP + T LYIG +P + + FS FG I ++ +++ TG SK
Sbjct: 463 PGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKG 522
Query: 97 FGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI---PPEHVHP 137
+GF+++ D ++A AM+GY L V + PP P
Sbjct: 523 YGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPPIAPP 566
>UNIPROTKB|J3KSW7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813
ProteinModelPortal:J3KSW7 Ensembl:ENST00000585096 Uniprot:J3KSW7
Length = 73
Score = 100 (40.3 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEV 107
P N +Y+G +P K+++ F ++GAI+ + + +N++ G F F+EF DP
Sbjct: 10 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRD 66
Query: 108 AEVVADAMH 116
AE DA+H
Sbjct: 67 AE---DAVH 72
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 122 (48.0 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 514 LFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 573
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 574 NGFQIGMKRLKVQLKRPK 591
>CGD|CAL0001156 [details] [associations]
symbol:orf19.1045 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0070274 "RES complex" evidence=IEA] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0000349 "generation of
catalytic spliceosome for first transesterification step"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0000384 "first spliceosomal transesterification
activity" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0001156
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0035690
EMBL:AACQ01000121 EMBL:AACQ01000120 KO:K13107 RefSeq:XP_713650.1
RefSeq:XP_713695.1 ProteinModelPortal:Q59VP9 STRING:Q59VP9
GeneID:3644670 GeneID:3644701 KEGG:cal:CaO19.1045
KEGG:cal:CaO19.8647 eggNOG:NOG308885 Uniprot:Q59VP9
Length = 353
Score = 119 (46.9 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 37/137 (27%), Positives = 71/137 (51%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKH---FGFIEFNDPEVAEVVA 112
LYIG IP+ K++ FSQ+G + + ++K++ SKH FGF+++ + + +
Sbjct: 128 LYIGNIPYNLTTKDLIIIFSQYGIPTHINLIKDKES--SKHHRGFGFLKYANFKSCILAI 185
Query: 113 DAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKL 172
D +G L + L+V +H + KL N +D +++R+++ KE+ ++ K++
Sbjct: 186 DNFNGIKLGDRYLKV-----DHNYYKLRGDENEDDYLIDYEEIKREMEEKEKKEKKEKRV 240
Query: 173 V-EKILKRDQKRRKRIE 188
+ L K K IE
Sbjct: 241 DNDGRLIEGNKEIKEIE 257
>UNIPROTKB|Q59VP9 [details] [associations]
symbol:IST3 "Putative uncharacterized protein IST3"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0001156 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000121 EMBL:AACQ01000120 KO:K13107
RefSeq:XP_713650.1 RefSeq:XP_713695.1 ProteinModelPortal:Q59VP9
STRING:Q59VP9 GeneID:3644670 GeneID:3644701 KEGG:cal:CaO19.1045
KEGG:cal:CaO19.8647 eggNOG:NOG308885 Uniprot:Q59VP9
Length = 353
Score = 119 (46.9 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 37/137 (27%), Positives = 71/137 (51%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKH---FGFIEFNDPEVAEVVA 112
LYIG IP+ K++ FSQ+G + + ++K++ SKH FGF+++ + + +
Sbjct: 128 LYIGNIPYNLTTKDLIIIFSQYGIPTHINLIKDKES--SKHHRGFGFLKYANFKSCILAI 185
Query: 113 DAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKL 172
D +G L + L+V +H + KL N +D +++R+++ KE+ ++ K++
Sbjct: 186 DNFNGIKLGDRYLKV-----DHNYYKLRGDENEDDYLIDYEEIKREMEEKEKKEKKEKRV 240
Query: 173 V-EKILKRDQKRRKRIE 188
+ L K K IE
Sbjct: 241 DNDGRLIEGNKEIKEIE 257
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 120 (47.3 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FGA+ ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 344 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAM 403
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 404 NGFQIGMKRLKVQLKRPK 421
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 115 (45.5 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 21/62 (33%), Positives = 41/62 (66%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+IG + + E+ ++ FS++G I ++ + R+++T +S+ FGF+ F +PE A+ AM
Sbjct: 25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84
Query: 116 HG 117
+G
Sbjct: 85 NG 86
>FB|FBgn0032822 [details] [associations]
symbol:CG10466 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 KO:K13107 GeneTree:ENSGT00600000084414 HSSP:P33240
RefSeq:NP_610003.1 UniGene:Dm.28254 ProteinModelPortal:Q9VIS0
SMR:Q9VIS0 IntAct:Q9VIS0 MINT:MINT-903544 STRING:Q9VIS0
PaxDb:Q9VIS0 PRIDE:Q9VIS0 EnsemblMetazoa:FBtr0081291
EnsemblMetazoa:FBtr0332178 GeneID:35268 KEGG:dme:Dmel_CG10466
UCSC:CG10466-RA FlyBase:FBgn0032822 InParanoid:Q9VIS0 OMA:YMEGCAP
OrthoDB:EOG4ZPCBP PhylomeDB:Q9VIS0 GenomeRNAi:35268 NextBio:792713
ArrayExpress:Q9VIS0 Bgee:Q9VIS0 Uniprot:Q9VIS0
Length = 154
Score = 107 (42.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+++ P+ E ++ FSQ+G + + + R+ KTG+SK F F+ + D + D +
Sbjct: 36 IFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNL 95
Query: 116 HGYLLFEHILQV-HLI---PPE 133
+G + + L+V H+ PP+
Sbjct: 96 NGIKILDRTLRVDHVADYKPPK 117
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 123 (48.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + ++ + F FG + ++ +K+T SK FGF+ F++P+ A+V AM
Sbjct: 728 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 787
Query: 116 HGYLLFEHILQVHLIPPEHVHP 137
+G+ + L+V L P+ P
Sbjct: 788 NGFQVGTKRLKVQLKKPKDSKP 809
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 99 (39.9 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 38/134 (28%), Positives = 63/134 (47%)
Query: 51 NKAT-VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAE 109
N AT +L++G I EK + FS FG I+ + + N T +++ F F+E+ +
Sbjct: 4 NNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVE----- 58
Query: 110 VVADAMHG-YLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPV--DRVQVERKLQNKERTL 166
V DA H Y + L I HV+ + + YKP+ D + + K++ E
Sbjct: 59 -VDDAKHALYNMNNFELNGKRI---HVNYSKTKKAD-HYKPIWLDEMYNQEKMKELE--- 110
Query: 167 EEHKKLVEKILKRD 180
E+ + L + LK D
Sbjct: 111 EDEENLNDDSLKGD 124
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 99 (39.9 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 38/134 (28%), Positives = 63/134 (47%)
Query: 51 NKAT-VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAE 109
N AT +L++G I EK + FS FG I+ + + N T +++ F F+E+ +
Sbjct: 4 NNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVE----- 58
Query: 110 VVADAMHG-YLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPV--DRVQVERKLQNKERTL 166
V DA H Y + L I HV+ + + YKP+ D + + K++ E
Sbjct: 59 -VDDAKHALYNMNNFELNGKRI---HVNYSKTKKAD-HYKPIWLDEMYNQEKMKELE--- 110
Query: 167 EEHKKLVEKILKRD 180
E+ + L + LK D
Sbjct: 111 EDEENLNDDSLKGD 124
>UNIPROTKB|E1BTK3 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
NextBio:20821039 Uniprot:E1BTK3
Length = 216
Score = 104 (41.7 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEV 110
+K+TV Y+ +P ++ FS++G + ++ I ++K T +SK FI F D E A+
Sbjct: 8 SKSTV-YVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQN 66
Query: 111 VADAMHGYLLFEHILQVHL 129
+ A++ LF +++ +
Sbjct: 67 CSRALNNKQLFGRVIKASI 85
Score = 43 (20.2 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 188 EAAGIEYECPE-IVGNVMPAPKKIK 211
EA + Y CP+ ++G P KK K
Sbjct: 112 EAGHLSYACPKNMLGEREPPKKKEK 136
Score = 36 (17.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 178 KRDQKRRKRI-EAAGIEYE 195
K+++K+RK++ E IE E
Sbjct: 133 KKEKKKRKKVVEPEEIEEE 151
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 120 (47.3 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FGA+ ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 377 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAM 436
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 437 NGFQIGMKRLKVQLKRPK 454
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 120 (47.3 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FGA+ ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 377 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAM 436
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 437 NGFQIGMKRLKVQLKRPK 454
>TAIR|locus:2086804 [details] [associations]
symbol:SCL30A "SC35-like splicing factor 30A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IGI;RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 EMBL:AP002038 HSSP:Q61474 HOGENOM:HOG000276233
KO:K12900 EMBL:AF370268 EMBL:AY063026 IPI:IPI00526651
RefSeq:NP_187966.1 UniGene:At.23948 ProteinModelPortal:Q9LHP2
SMR:Q9LHP2 STRING:Q9LHP2 PRIDE:Q9LHP2 EnsemblPlants:AT3G13570.1
GeneID:820559 KEGG:ath:AT3G13570 TAIR:At3g13570 InParanoid:Q9LHP2
OMA:KERSYSR PhylomeDB:Q9LHP2 ProtClustDB:CLSN2723371
ArrayExpress:Q9LHP2 Genevestigator:Q9LHP2 Uniprot:Q9LHP2
Length = 262
Score = 116 (45.9 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + + H +++++ F QFG +K + + R+ TG + FGFI+F DP A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 114 AMHGYLLFEHILQV 127
M GYLL L V
Sbjct: 97 QMDGYLLLGRELTV 110
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 111 (44.1 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 37/119 (31%), Positives = 56/119 (47%)
Query: 34 PLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ 93
P GP EEK + A +Y+G + +G +E++A F G++ R+ I +K +G
Sbjct: 25 PGNAGPVIMSIEEK-MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGH 83
Query: 94 SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLW---RGF-NPRYK 148
K F +IEF+D E V LF Q+ +IP P + RGF RY+
Sbjct: 84 PKGFAYIEFSDKE--SVRTSLALDESLFRG-RQIKVIPKRTNRPGISTTDRGFPRARYR 139
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 120 (47.3 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FGA+ ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 398 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAM 457
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 458 NGFQIGMKRLKVQLKRPK 475
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 120 (47.3 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FGA+ ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 399 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAM 458
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 459 NGFQIGMKRLKVQLKRPK 476
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 120 (47.3 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FGA+ ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 399 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAM 458
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 459 NGFQIGMKRLKVQLKRPK 476
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 114 (45.2 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 25/66 (37%), Positives = 42/66 (63%)
Query: 38 GPGRKLT-EEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKH 96
GP R L+ EEK ++K +V Y+G + +G ++++A FS G+I R+ I +K +G K
Sbjct: 77 GPPRPLSAEEKKEIDKRSV-YVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKG 135
Query: 97 FGFIEF 102
+ +IEF
Sbjct: 136 YAYIEF 141
>FB|FBgn0027617 [details] [associations]
symbol:CG5808 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0006457 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 KO:K12735 EMBL:AF132148
RefSeq:NP_651291.1 UniGene:Dm.3212 HSSP:P14832 SMR:Q9XYZ6
IntAct:Q9XYZ6 MINT:MINT-970905 STRING:Q9XYZ6
EnsemblMetazoa:FBtr0084738 GeneID:42957 KEGG:dme:Dmel_CG5808
UCSC:CG5808-RA FlyBase:FBgn0027617 InParanoid:Q9XYZ6 OMA:SIWGVVE
OrthoDB:EOG49S4P0 GenomeRNAi:42957 NextBio:831514 Uniprot:Q9XYZ6
Length = 653
Score = 121 (47.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
VL++ ++ + +++ FS FG +K + R++KTG S + F+EF D + E
Sbjct: 241 VLFVCKLNPVTTDDDLEIIFSSFGVLKGCEVIRDRKTGDSLQYAFVEFEDQKSCEAAYFK 300
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQ-NKERTLEEHKKLV 173
M L+ + ++H+ + V WRG + + ++ RKL N R ++H+K
Sbjct: 301 MDNVLIDDR--RIHVDFSQSVSKVTWRG---KGRGIEGDY--RKLDFNNLRDDKDHRKPN 353
Query: 174 E-KILKRDQKRRKRIE 188
+ D K R R E
Sbjct: 354 NGRSRTEDHKERNRTE 369
>DICTYBASE|DDB_G0286395 [details] [associations]
symbol:u2af2 "U2 snRNP auxiliary factor large
subunit" species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008187 "poly-pyrimidine tract binding"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0286395 GenomeReviews:CM000153_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000085 GO:GO:0000398
GO:GO:0005686 GO:GO:0008187 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_637725.1 ProteinModelPortal:Q54LV5
SMR:Q54LV5 EnsemblProtists:DDB0233353 GeneID:8625590
KEGG:ddi:DDB_G0286395 InParanoid:Q54LV5 OMA:DELMDND Uniprot:Q54LV5
Length = 671
Score = 121 (47.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+Y+G +P E+++++ S +G +K + ++ TG SK F F E+ D EV +V +
Sbjct: 380 IYVGGLPSNLSEEQVKSLLSAYGKLKAFNLVKDTNTGVSKGFAFCEYQDSEVTDVACSKL 439
Query: 116 HGYLLFEHILQV 127
+G L + L V
Sbjct: 440 NGIPLADKTLVV 451
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 119 (46.9 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + EM F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 428
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 429 NGFQIGMKRLKVQLKRPK 446
>GENEDB_PFALCIPARUM|MAL8P1.40 [details] [associations]
symbol:MAL8P1.40 "RNA-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051
RefSeq:XP_001349292.1 ProteinModelPortal:Q8IB66 IntAct:Q8IB66
MINT:MINT-1560303 EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381
KEGG:pfa:MAL8P1.40 EuPathDB:PlasmoDB:PF3D7_0823200
HOGENOM:HOG000282627 OMA:QHFQHFG ProtClustDB:CLSZ2431748
Uniprot:Q8IB66
Length = 286
Score = 116 (45.9 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 27/104 (25%), Positives = 51/104 (49%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+++ +P + + E+ F FG + RI R+ G++K +GF+ FN+PE A M
Sbjct: 152 VFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDAN-GRNKGYGFVSFNNPESALNAIKGM 210
Query: 116 HGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKL 159
HG+ + L+V L E + ++ P+ P V++ +
Sbjct: 211 HGFYVSGKHLKVQLKKGEEHYVQMNTPAQPQLTPAQPYSVQQPI 254
>UNIPROTKB|Q8IB66 [details] [associations]
symbol:MAL8P1.40 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051 RefSeq:XP_001349292.1
ProteinModelPortal:Q8IB66 IntAct:Q8IB66 MINT:MINT-1560303
EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381 KEGG:pfa:MAL8P1.40
EuPathDB:PlasmoDB:PF3D7_0823200 HOGENOM:HOG000282627 OMA:QHFQHFG
ProtClustDB:CLSZ2431748 Uniprot:Q8IB66
Length = 286
Score = 116 (45.9 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 27/104 (25%), Positives = 51/104 (49%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+++ +P + + E+ F FG + RI R+ G++K +GF+ FN+PE A M
Sbjct: 152 VFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDAN-GRNKGYGFVSFNNPESALNAIKGM 210
Query: 116 HGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKL 159
HG+ + L+V L E + ++ P+ P V++ +
Sbjct: 211 HGFYVSGKHLKVQLKKGEEHYVQMNTPAQPQLTPAQPYSVQQPI 254
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 114 (45.2 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 37 GGPGRKLTEEKPLV--NKATV-----LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNK 89
GGP PL+ N AT L + +P + E ++ F G I+ ++ R+K
Sbjct: 15 GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 90 KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132
TGQS +GF+ ++DP A+ + ++G L ++V P
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP 117
Score = 38 (18.4 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 127 VHLIPPEHVHPKLWRGFNPRYKPVDRVQVER 157
V+ + PE LW+ F P + V V+V R
Sbjct: 288 VYNLSPEADESVLWQLFGP-FGAVTNVKVIR 317
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 114 (45.2 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 37 GGPGRKLTEEKPLV--NKATV-----LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNK 89
GGP PL+ N AT L + +P + E ++ F G I+ ++ R+K
Sbjct: 15 GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 90 KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132
TGQS +GF+ ++DP A+ + ++G L ++V P
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP 117
Score = 38 (18.4 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 127 VHLIPPEHVHPKLWRGFNPRYKPVDRVQVER 157
V+ + PE LW+ F P + V V+V R
Sbjct: 288 VYNLSPEADESVLWQLFGP-FGAVTNVKVIR 317
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 114 (45.2 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 37 GGPGRKLTEEKPLV--NKATV-----LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNK 89
GGP PL+ N AT L + +P + E ++ F G I+ ++ R+K
Sbjct: 15 GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 90 KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132
TGQS +GF+ ++DP A+ + ++G L ++V P
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP 117
Score = 38 (18.4 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 127 VHLIPPEHVHPKLWRGFNPRYKPVDRVQVER 157
V+ + PE LW+ F P + V V+V R
Sbjct: 288 VYNLSPEADESVLWQLFGP-FGAVTNVKVIR 317
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 114 (45.2 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 37 GGPGRKLTEEKPLV--NKATV-----LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNK 89
GGP PL+ N AT L + +P + E ++ F G I+ ++ R+K
Sbjct: 15 GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 90 KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132
TGQS +GF+ ++DP A+ + ++G L ++V P
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP 117
Score = 38 (18.4 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 127 VHLIPPEHVHPKLWRGFNPRYKPVDRVQVER 157
V+ + PE LW+ F P + V V+V R
Sbjct: 288 VYNLSPEADESVLWQLFGP-FGAVTNVKVIR 317
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 114 (45.2 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 37 GGPGRKLTEEKPLV--NKATV-----LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNK 89
GGP PL+ N AT L + +P + E ++ F G I+ ++ R+K
Sbjct: 15 GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 90 KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132
TGQS +GF+ ++DP A+ + ++G L ++V P
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP 117
Score = 38 (18.4 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 127 VHLIPPEHVHPKLWRGFNPRYKPVDRVQVER 157
V+ + PE LW+ F P + V V+V R
Sbjct: 288 VYNLSPEADESVLWQLFGP-FGAVTNVKVIR 317
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 114 (45.2 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 37 GGPGRKLTEEKPLV--NKATV-----LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNK 89
GGP PL+ N AT L + +P + E ++ F G I+ ++ R+K
Sbjct: 15 GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 90 KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132
TGQS +GF+ ++DP A+ + ++G L ++V P
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP 117
Score = 38 (18.4 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 127 VHLIPPEHVHPKLWRGFNPRYKPVDRVQVER 157
V+ + PE LW+ F P + V V+V R
Sbjct: 289 VYNLSPEADESVLWQLFGP-FGAVTNVKVIR 318
>UNIPROTKB|B4DQL3 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
HOGENOM:HOG000004754 EMBL:AL589765 UniGene:Hs.26047 HGNC:HGNC:11967
EMBL:AK298852 IPI:IPI00909704 SMR:B4DQL3 STRING:B4DQL3
Ensembl:ENST00000392706 UCSC:uc010pdh.2 Uniprot:B4DQL3
Length = 260
Score = 115 (45.5 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 177 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 236
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 237 NGFQIGMKRLKVQLKRPK 254
>ASPGD|ASPL0000053752 [details] [associations]
symbol:AN1340 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 EMBL:AACD01000018
OrthoDB:EOG44N22T RefSeq:XP_658944.1 ProteinModelPortal:Q5BDP0
SMR:Q5BDP0 STRING:Q5BDP0 EnsemblFungi:CADANIAT00001272
GeneID:2877113 KEGG:ani:AN1340.2 OMA:SRACCYG Uniprot:Q5BDP0
Length = 187
Score = 111 (44.1 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 43 LTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEF 102
L E+K ++ A +++G + +G +E+QA F G+I R+ I +K TGQ K + ++EF
Sbjct: 58 LKEDKEDID-ARSIFVGNVDYGASPEEIQAHFQSCGSINRVTILLDKFTGQPKGYAYVEF 116
Query: 103 NDPE-VAEVV 111
+P VA+ +
Sbjct: 117 AEPSLVAQAL 126
>UNIPROTKB|F1P5J4 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
Length = 354
Score = 117 (46.2 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 271 LFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPTSAQAAIQAM 330
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 331 NGFQIGMKRLKVQLKRPK 348
>POMBASE|SPAC644.16 [details] [associations]
symbol:SPAC644.16 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005849 "mRNA
cleavage factor complex" evidence=ISO] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC644.16 EMBL:CU329670
GO:GO:0000166 Gene3D:3.30.70.330 eggNOG:NOG246793 GO:GO:0006378
GO:GO:0003723 GO:GO:0006379 GO:GO:0005849 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4GQTF6 HSSP:P33240 RefSeq:NP_593884.1
ProteinModelPortal:Q9P6P7 EnsemblFungi:SPAC644.16.1 GeneID:2543462
KEGG:spo:SPAC644.16 OMA:SHEERAN NextBio:20804474 Uniprot:Q9P6P7
Length = 422
Score = 118 (46.6 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAE 109
+N + V+Y+G IP+ E+++ F Q G +K ++ + ++GQ K +GF E++DP A
Sbjct: 1 MNPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAA 60
Query: 110 VVADAMHGY 118
++ Y
Sbjct: 61 SAVRNLNNY 69
>UNIPROTKB|F1NYP4 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:EDSEKNG EMBL:AADN02067588
EMBL:AADN02067589 EMBL:AADN02067590 EMBL:AADN02067591
EMBL:AADN02067592 EMBL:AADN02067593 EMBL:AADN02067594
EMBL:AADN02067595 EMBL:AADN02067596 IPI:IPI00590965
Ensembl:ENSGALT00000003800 Uniprot:F1NYP4
Length = 361
Score = 117 (46.2 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 278 LFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 337
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 338 NGFQIGMKRLKVQLKRPK 355
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 116 (45.9 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVV 111
K +++G + EK++ FFSQFG I++ + +K TG+ + FGF+ F D + A+
Sbjct: 97 KVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADK- 155
Query: 112 ADAMHGYLLFEHILQV 127
A + +++ H ++V
Sbjct: 156 AVVLKFHMINGHKVEV 171
>UNIPROTKB|F1LVS8 [details] [associations]
symbol:F1LVS8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002075 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006810 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 InterPro:IPR018222 PROSITE:PS50177
GeneTree:ENSGT00390000011365 IPI:IPI00561182
Ensembl:ENSRNOT00000002166 Uniprot:F1LVS8
Length = 439
Score = 118 (46.6 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 32/98 (32%), Positives = 47/98 (47%)
Query: 16 VSSQLPVPSDKKGAADFLPLEGGPGRKLTEEKPLVNKATV-------LYIGRIPHGFYEK 68
V SQ P ++ G F P PGR TE+ N+ + L++G +PH E
Sbjct: 248 VQSQAPRIREQPG---FPPRGPRPGRGDTEQNDSDNRRIIRYPDSHQLFVGNLPHDIDEN 304
Query: 69 EMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPE 106
E++ FF FG + L I G+ +FGF+ F+D E
Sbjct: 305 ELKEFFMHFGNVVELHINTKGVGGKLPNFGFVVFDDSE 342
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 97 (39.2 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVV 111
+++G +P +E++ +F +FG + + +K+TG SK +GF+ FN E +
Sbjct: 17 IFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALEKI 72
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 97 (39.2 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 59 GRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVA 108
G IP+ E++++ FS+ G + R+ +++TG+ K +GF E+ D E A
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 51
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 97 (39.2 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVA 112
A LY+G + + E +++ FS G + + I + +TG+SK G++ E A+
Sbjct: 2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 113 DAMHGYLLFEHILQVHLIPPE 133
+ + G LL ++ V + P+
Sbjct: 62 ETLDGALLRNRVITVSVARPQ 82
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 97 (39.2 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVA 112
A LY+G + + E +++ FS G + + I + +TG+SK G++ E A+
Sbjct: 2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 113 DAMHGYLLFEHILQVHLIPPE 133
+ + G LL ++ V + P+
Sbjct: 62 ETLDGALLRNRVITVSVARPQ 82
>UNIPROTKB|G4MUH3 [details] [associations]
symbol:MGG_07252 "Polyadenylate-binding protein 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
Length = 193
Score = 111 (44.1 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 30/102 (29%), Positives = 55/102 (53%)
Query: 44 TEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFN 103
TE + V+ ++ ++G + + +E+QA F G+I R+ I +K TGQ K F ++EF
Sbjct: 64 TESRDDVDSRSI-FVGNVDYSASPEEIQAHFQSCGSINRVTILLDKFTGQPKGFAYVEFT 122
Query: 104 DPEVAEVVADAMHGYLLFEHILQ---VHLIPPEHVHPKLWRG 142
+P + VA A+ +L E + + + + P +P + RG
Sbjct: 123 EPSL---VAQAL---VLNESVFKGRNIKVSPKRTNYPGMSRG 158
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 118 (46.6 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + EM F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 359 VFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTAIQAM 418
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 419 NGFQIGMKRLKVQLKRPK 436
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 108 (43.1 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++IG +P+ E ++ FSQ+G + + + R+KKTG+SK F F+ + D + D
Sbjct: 38 VFIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 116 HGYLLFEHILQV-HLI---PPE 133
+G + ++V H+ PP+
Sbjct: 98 NGIKIKGRTIRVDHVANYRPPK 119
>POMBASE|SPBC18H10.03 [details] [associations]
symbol:tif35 "translation initiation factor eIF3g"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006413 "translational initiation"
evidence=ISS] [GO:0016282 "eukaryotic 43S preinitiation complex"
evidence=IDA] [GO:0071540 "eukaryotic translation initiation factor
3 complex, eIF3e" evidence=IDA] [GO:0071541 "eukaryotic translation
initiation factor 3 complex, eIF3m" evidence=IDA] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC18H10.03 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
GO:GO:0003723 GO:GO:0003743 eggNOG:COG0724 GO:GO:0002183 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
GO:GO:0016282 GO:GO:0071540 GO:GO:0071541 HOGENOM:HOG000239560
OMA:NSEFDAP OrthoDB:EOG4QJVX7 EMBL:AB011823 EMBL:D89144 PIR:T39767
RefSeq:NP_595727.1 ProteinModelPortal:P78795 STRING:P78795
EnsemblFungi:SPBC18H10.03.1 GeneID:2540819 KEGG:spo:SPBC18H10.03
NextBio:20801936 Uniprot:P78795
Length = 282
Score = 115 (45.5 bits), Expect = 8.4e-05, P = 8.3e-05
Identities = 30/105 (28%), Positives = 54/105 (51%)
Query: 16 VSSQLPVPSDKKGAADFLPLEGGPGRKLTEE--KPLVNKATVLYIGRIPHGFYEKEMQAF 73
VSS+ +KG L G GR+ + K + + L + + E+E++
Sbjct: 162 VSSRASGALGEKGRYIAPHLRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDL 221
Query: 74 FSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY 118
F +FG I+R+ +A++K+TG++K F F+ + D + A D + GY
Sbjct: 222 FRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGY 266
>RGD|1309571 [details] [associations]
symbol:G3bp2 "GTPase activating protein (SH3 domain) binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006810 "transport"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002075
InterPro:IPR012677 Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102
SMART:SM00360 RGD:1309571 GO:GO:0000166 GO:GO:0006810
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 InterPro:IPR018222
PROSITE:PS50177 eggNOG:NOG324333 GeneTree:ENSGT00390000011365
HOGENOM:HOG000220838 HOVERGEN:HBG007211 CTD:9908 EMBL:CH474060
EMBL:BC079225 IPI:IPI00464529 RefSeq:NP_001014011.1
UniGene:Rn.198360 MINT:MINT-7138399 STRING:Q6AY21
Ensembl:ENSRNOT00000003346 GeneID:305240 KEGG:rno:305240
UCSC:RGD:1309571 NextBio:654241 Genevestigator:Q6AY21
Uniprot:Q6AY21
Length = 449
Score = 118 (46.6 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 30/91 (32%), Positives = 45/91 (49%)
Query: 23 PSDKKGAADFLPLEGGPGRKLTEEKPLVNKATV-------LYIGRIPHGFYEKEMQAFFS 75
P ++ G F P PGR TE+ N+ + L++G +PH E E++ FF
Sbjct: 263 PRERPG---FPPRGPRPGRGDTEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFM 319
Query: 76 QFGAIKRLRIARNKKTGQSKHFGFIEFNDPE 106
FG + LRI G+ +FGF+ F+D E
Sbjct: 320 SFGNVVELRINTKGVGGKLPNFGFVVFDDSE 350
>ZFIN|ZDB-GENE-050626-88 [details] [associations]
symbol:rbmx2 "RNA binding motif protein, X-linked 2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050626-88 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00600000084414 EMBL:AL935199
IPI:IPI00505218 Ensembl:ENSDART00000143373 Bgee:F1RAH8
Uniprot:F1RAH8
Length = 450
Score = 118 (46.6 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 38/138 (27%), Positives = 67/138 (48%)
Query: 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEV 110
N A V +IG P+ E ++ FSQ+G I + + R+KKTG+SK F F+ + D +
Sbjct: 34 NSAWV-FIGGFPYELTEGDIICVFSQYGEIANINLVRDKKTGKSKGFCFLCYEDQRSTIL 92
Query: 111 VADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERK--LQNKERTLEE 168
D +G + ++V + + PK + K + K ++E + EE
Sbjct: 93 AVDNFNGIKIKGRTIRVDHVA-NYRPPKDTDDIDDITKQLREEGCAPKPVSSSEEESAEE 151
Query: 169 HKKLVEKILKRDQKRRKR 186
+ V+K K+D+K +K+
Sbjct: 152 YAVPVKKP-KKDKKEKKK 168
>ASPGD|ASPL0000033941 [details] [associations]
symbol:cyp8 species:162425 "Emericella nidulans"
[GO:0044732 "mitotic spindle pole body" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:1901407 "regulation of phosphorylation
of RNA polymerase II C-terminal domain" evidence=IEA] [GO:0008360
"regulation of cell shape" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:BN001306 GO:GO:0003723 eggNOG:COG0724
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413 EMBL:AACD01000169
RefSeq:XP_682364.1 ProteinModelPortal:Q5ARI5 STRING:Q5ARI5
EnsemblFungi:CADANIAT00009519 GeneID:2868035 KEGG:ani:AN9095.2
HOGENOM:HOG000186284 KO:K12735 OMA:DRTQNRS OrthoDB:EOG4WWVT7
Uniprot:Q5ARI5
Length = 461
Score = 118 (46.6 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 33/128 (25%), Positives = 57/128 (44%)
Query: 25 DKKGAADFLPLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLR 84
+++ A L LE E KP N VL++ ++ +++++ FS+FG I
Sbjct: 222 EREARAQALTLEMVGDLPFAEVKPPEN---VLFVCKLNPVTQDEDLELIFSRFGKILSCE 278
Query: 85 IARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFN 144
+ R+K+TG S + FIEF + E M G L+ +H + V + WR
Sbjct: 279 VIRDKRTGDSLQYAFIEFESQKDCEQAYFKMQGVLIDDHRIHVDFSQSVSKLSESWRDAT 338
Query: 145 PRYKPVDR 152
+ + R
Sbjct: 339 VKKRSAQR 346
>UNIPROTKB|K7EJD7 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589386 Uniprot:K7EJD7
Length = 185
Score = 110 (43.8 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 116 LFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASAQTAIQAM 175
Query: 116 HGY 118
+G+
Sbjct: 176 NGF 178
>UNIPROTKB|Q7ZXB8 [details] [associations]
symbol:pabpn1-b "Polyadenylate-binding protein 2-B"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
KO:K14396 HSSP:P33240 EMBL:BC045063 RefSeq:NP_001080719.1
UniGene:Xl.21871 ProteinModelPortal:Q7ZXB8 SMR:Q7ZXB8 GeneID:380411
KEGG:xla:380411 CTD:380411 Xenbase:XB-GENE-1007055 Uniprot:Q7ZXB8
Length = 295
Score = 115 (45.5 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 37/119 (31%), Positives = 56/119 (47%)
Query: 34 PLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ 93
P GP EEK + A +Y+G + +G +E++A F G++ R+ I +K TG
Sbjct: 143 PGNAGPVIMSVEEK-MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGH 201
Query: 94 SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLW---RGF-NPRYK 148
K F +IEF+D E V LF Q+ ++P P + RGF RY+
Sbjct: 202 PKGFAYIEFSDKE--SVRTSLALDESLFRG-RQIKVVPKRTNRPGISTTDRGFPRARYR 257
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 115 (45.5 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 37/119 (31%), Positives = 56/119 (47%)
Query: 34 PLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ 93
P GP EEK + A +Y+G + +G +E++A F G++ R+ I +K TG
Sbjct: 144 PGNAGPVIMSIEEK-MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGH 202
Query: 94 SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLW---RGF-NPRYK 148
K F +IEF+D E V LF Q+ ++P P + RGF RY+
Sbjct: 203 PKGFAYIEFSDKE--SVRTSLALDESLFRG-RQIKVVPKRTNRPGISTTDRGFPRARYR 258
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 116 (45.9 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E+++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 99 TLNGLRLQTKTIKVSYARP 117
>WB|WBGene00004389 [details] [associations]
symbol:rnp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0018991 GO:GO:0040010 GO:GO:0007411 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0007413 GO:GO:0040020
GO:GO:0040022 HSSP:Q9V535 EMBL:FO081580
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
InterPro:IPR006532 TIGRFAMs:TIGR01645 KO:K12838 GeneID:171922
KEGG:cel:CELE_Y47G6A.20 UCSC:Y47G6A.20b CTD:171922 NextBio:873257
RefSeq:NP_491176.1 ProteinModelPortal:Q9N3S4 SMR:Q9N3S4
STRING:Q9N3S4 PRIDE:Q9N3S4 EnsemblMetazoa:Y47G6A.20b
WormBase:Y47G6A.20b InParanoid:Q9N3S4 OMA:RFFGGNT
ArrayExpress:Q9N3S4 Uniprot:Q9N3S4
Length = 749
Score = 120 (47.3 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 35/124 (28%), Positives = 62/124 (50%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+Y+G I E ++ F FG IK + ++ + TG K F F+E+ PE A + ++M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 116 HGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPV-DRVQVERKLQNKERTLEEHKKLVE 174
+G +L L+V+ + + + +L + P+ +P+ D VQ + K + H L E
Sbjct: 164 NGQMLGGRNLKVNSMMFQEM--RLPQNM-PQAQPIIDMVQKDAKKYFRVYVSSVHPDLSE 220
Query: 175 KILK 178
LK
Sbjct: 221 TDLK 224
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 118 (46.6 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+IG I E+ ++ +FS FG + I +++ TG+++ FGF+ F DP VAE+V
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 116 H 116
H
Sbjct: 68 H 68
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 105 (42.0 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G + E+ ++ FS FG I + + ++++T +S+ FGFI F +PE A AM
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 116 HG 117
+G
Sbjct: 68 NG 69
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 112 (44.5 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 36 EGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSK 95
EG P EEK ++K +V Y+G + +G ++++A FS G+I R+ I +K +G K
Sbjct: 76 EGPPQPLSAEEKKEIDKRSV-YVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPK 134
Query: 96 HFGFIEF 102
+ +IEF
Sbjct: 135 GYAYIEF 141
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 116 (45.9 bits), Expect = 0.00010, P = 0.00010
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E+++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 99 TLNGLRLQTKTIKVSYARP 117
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 117 (46.2 bits), Expect = 0.00010, P = 0.00010
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 339 LFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQAM 398
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 399 NGFQIGMKRLKVQLKRPK 416
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 116 (45.9 bits), Expect = 0.00010, P = 0.00010
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E+++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 99 TLNGLRLQTKTIKVSYARP 117
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 116 (45.9 bits), Expect = 0.00011, P = 0.00011
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E+++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 127 TLNGLRLQTKTIKVSYARP 145
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 116 (45.9 bits), Expect = 0.00011, P = 0.00011
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E+++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 67 TNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAIN 126
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 127 TLNGLRLQTKTIKVSYARP 145
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 116 (45.9 bits), Expect = 0.00011, P = 0.00011
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E+++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 128 TLNGLRLQTKTIKVSYARP 146
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 116 (45.9 bits), Expect = 0.00011, P = 0.00011
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E+++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 128 TLNGLRLQTKTIKVSYARP 146
>UNIPROTKB|K7GKR9 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000035101 Uniprot:K7GKR9
Length = 196
Score = 110 (43.8 bits), Expect = 0.00012, P = 0.00012
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+IG + EK ++A F ++G I + + ++++T +S+ F F+ F P A+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 116 HGYLLF---EHILQVHL 129
+G LL+ E +++ HL
Sbjct: 70 NGKLLYHVEEIVMEAHL 86
>ZFIN|ZDB-GENE-070620-21 [details] [associations]
symbol:zgc:165603 "zgc:165603" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070620-21 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:CABZ01080723 EMBL:CABZ01080724 EMBL:CABZ01080725
EMBL:CABZ01080726 EMBL:CABZ01080727 EMBL:BC142894 IPI:IPI00851471
RefSeq:NP_001092221.1 UniGene:Dr.154402 SMR:A5PLG5
Ensembl:ENSDART00000105482 GeneID:571425 KEGG:dre:571425
eggNOG:KOG0146 HOGENOM:HOG000286011 HOVERGEN:HBG090495 OMA:DGHESSP
NextBio:20890554 Uniprot:A5PLG5
Length = 155
Score = 105 (42.0 bits), Expect = 0.00012, P = 0.00012
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVA 112
A L+IG+IP EK+++ F QFG I L + +++ TG K F+ + E A
Sbjct: 81 AIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQ 140
Query: 113 DAMH 116
+A+H
Sbjct: 141 NALH 144
>TAIR|locus:2058141 [details] [associations]
symbol:AT2G43370 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HSSP:Q9V535 HOGENOM:HOG000006374 KO:K13155
EMBL:AY072388 EMBL:AY114697 IPI:IPI00539495 RefSeq:NP_850395.1
UniGene:At.42685 ProteinModelPortal:Q8VY74 SMR:Q8VY74 IntAct:Q8VY74
STRING:Q8VY74 EnsemblPlants:AT2G43370.1 GeneID:818938
KEGG:ath:AT2G43370 TAIR:At2g43370 InParanoid:Q8VY74 OMA:RLVRHIV
PhylomeDB:Q8VY74 ProtClustDB:CLSN2680226 Genevestigator:Q8VY74
Uniprot:Q8VY74
Length = 333
Score = 115 (45.5 bits), Expect = 0.00012, P = 0.00012
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 45 EEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFN- 103
+ K + + L++GR+ H E ++ S++G IK LR+ R+ TG S+ +GF+E+
Sbjct: 55 DSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYET 114
Query: 104 DPEVAEVVADAMHGYL 119
+ E+ DA H +
Sbjct: 115 EKEMLRAYEDAHHSLI 130
>TAIR|locus:2171539 [details] [associations]
symbol:RPS19 "ribosomal protein S19" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IDA] InterPro:IPR000504
InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
Uniprot:P39697
Length = 212
Score = 111 (44.1 bits), Expect = 0.00012, P = 0.00012
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVA 112
+T LYIG + G E ++ FS F + R+ NK TG+S+ +GF+ F + A
Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
Query: 113 DAMHG 117
AM+G
Sbjct: 90 SAMNG 94
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 106 (42.4 bits), Expect = 0.00012, P = 0.00012
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G + E+ ++ FS FG I + + ++++T +S+ FGFI F +PE A AM
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 116 HG 117
+G
Sbjct: 68 NG 69
>UNIPROTKB|E1C3R0 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl
cis-trans isomerase activity" evidence=IEA] [GO:0006457 "protein
folding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 GO:GO:0006457
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00670000097658
KO:K12735 OMA:DRTQNRS CTD:85313 EMBL:AADN02025352 IPI:IPI00603037
RefSeq:XP_419663.2 UniGene:Gga.34615 ProteinModelPortal:E1C3R0
Ensembl:ENSGALT00000020195 GeneID:421625 KEGG:gga:421625
NextBio:20824363 Uniprot:E1C3R0
Length = 478
Score = 117 (46.2 bits), Expect = 0.00012, P = 0.00012
Identities = 41/139 (29%), Positives = 65/139 (46%)
Query: 45 EEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFND 104
E KP N VL++ ++ +++++ FS+FG IK + R+ KTG+S + FIEF
Sbjct: 234 EVKPPEN---VLFVCKLNPVTTDEDLEIIFSRFGPIKSCEVIRDWKTGESLCYAFIEFEK 290
Query: 105 PEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKER 164
E E M L+ + ++H+ + V W+G +Y D E KER
Sbjct: 291 EEDCEKAYFKMDNVLIDDR--RIHVDFSQSVAKIKWKGKGGQYTKDDFKDYE-----KER 343
Query: 165 TLEEHKKLVEKIL-KRDQK 182
L EK+ K+D K
Sbjct: 344 DKPSKFALKEKVKPKQDAK 362
>TAIR|locus:2206001 [details] [associations]
symbol:AT1G60900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC018908 HSSP:P26368 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:AY140014
IPI:IPI00528167 PIR:E96634 RefSeq:NP_176287.3 UniGene:At.17780
UniGene:At.52293 ProteinModelPortal:Q8L716 SMR:Q8L716 PaxDb:Q8L716
PRIDE:Q8L716 EnsemblPlants:AT1G60900.1 GeneID:842382
KEGG:ath:AT1G60900 GeneFarm:4545 TAIR:At1g60900 InParanoid:Q8L716
OMA:TQMGGLP PhylomeDB:Q8L716 ProtClustDB:CLSN2918395
Genevestigator:Q8L716 Uniprot:Q8L716
Length = 589
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 20/83 (24%), Positives = 44/83 (53%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+++G +P+ F E +++ FG ++ + ++++TG SK + F + DP V ++ A+
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 116 HGYLLFEHILQVHLIPPEHVHPK 138
+G + + L V + PK
Sbjct: 437 NGIKMGDKTLTVRRAIQGAIQPK 459
>MGI|MGI:1914668 [details] [associations]
symbol:Ppil4 "peptidylprolyl isomerase (cyclophilin)-like 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006457
"protein folding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1914668
GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00670000097658 HOGENOM:HOG000186284
KO:K12735 OMA:DRTQNRS CTD:85313 HOVERGEN:HBG057731
OrthoDB:EOG4QVCC7 EMBL:AK011443 EMBL:AK014406 EMBL:AK167258
EMBL:BC079912 IPI:IPI00110280 RefSeq:NP_080417.2 UniGene:Mm.38927
ProteinModelPortal:Q9CXG3 SMR:Q9CXG3 PhosphoSite:Q9CXG3
PaxDb:Q9CXG3 PRIDE:Q9CXG3 Ensembl:ENSMUST00000015901 GeneID:67418
KEGG:mmu:67418 UCSC:uc007eip.2 InParanoid:Q9CXG3 NextBio:324510
Bgee:Q9CXG3 CleanEx:MM_PPIL4 Genevestigator:Q9CXG3
GermOnline:ENSMUSG00000015757 Uniprot:Q9CXG3
Length = 492
Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
Identities = 32/121 (26%), Positives = 61/121 (50%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
VL++ ++ +++++ FS+FG I+ + R+ KTG+S + FIEF E E
Sbjct: 241 VLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFK 300
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M L+ + ++H+ + V W+G +Y D + E++ Q+K L +K+
Sbjct: 301 MDNVLIDDR--RIHVDFSQSVAKVKWKGKGGKYTKSDFKEYEKE-QDKPANLVLKEKVKP 357
Query: 175 K 175
K
Sbjct: 358 K 358
>RGD|1311051 [details] [associations]
symbol:Ppil4 "peptidylprolyl isomerase (cyclophilin)-like 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 RGD:1311051 GO:GO:0006457
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00670000097658
OMA:DRTQNRS OrthoDB:EOG4QVCC7 IPI:IPI00365361
Ensembl:ENSRNOT00000021437 UCSC:RGD:1311051 Uniprot:D4AEG3
Length = 492
Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
Identities = 32/121 (26%), Positives = 61/121 (50%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
VL++ ++ +++++ FS+FG I+ + R+ KTG+S + FIEF E E
Sbjct: 241 VLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFK 300
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M L+ + ++H+ + V W+G +Y D + E++ Q+K L +K+
Sbjct: 301 MDNVLIDDR--RIHVDFSQSVAKVKWKGKGGKYTKSDFKEYEKE-QDKPANLVLKEKVKP 357
Query: 175 K 175
K
Sbjct: 358 K 358
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G + E+ ++ FS FG I + + ++++T +S+ FGFI F +PE A AM
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 116 HG 117
+G
Sbjct: 68 NG 69
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G + E+ ++ FS FG I + + ++++T +S+ FGFI F +PE A AM
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 116 HG 117
+G
Sbjct: 68 NG 69
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 114 (45.2 bits), Expect = 0.00013, P = 0.00013
Identities = 24/82 (29%), Positives = 49/82 (59%)
Query: 47 KP-LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDP 105
KP ++ K +++G + ++ +Q +FSQFG I++ ++ +K TG+ + FGF+ F+D
Sbjct: 89 KPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDN 148
Query: 106 EVAEVVADAMHGYLLFEHILQV 127
+ A+ A M + + H ++V
Sbjct: 149 DSADK-AVVMKFHSICGHKVEV 169
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 109 (43.4 bits), Expect = 0.00014, P = 0.00014
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + E ++ F FG I + + ++ TG+SK +GFI F+D E A + +
Sbjct: 15 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 74
Query: 116 HGYLL 120
+G+ L
Sbjct: 75 NGFEL 79
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 95 (38.5 bits), Expect = 0.00014, P = 0.00014
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+IG + EK ++A F ++G I + + ++++T +S+ F F+ F P A+ A M
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 116 HGYLL 120
+G ++
Sbjct: 72 NGKMM 76
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 95 (38.5 bits), Expect = 0.00014, P = 0.00014
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++ R+ ++ ++ FS FG IK R+ R+ +T + K FGFI F+ + A ++
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 116 HGYLLFEHILQVHL 129
G ++ ++ V +
Sbjct: 69 DGKIVDGRLIFVEV 82
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 45 EEKPLVNKAT-VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFN 103
+E+ +++K+ +++G IP+ E++++ FS+ G + L++ ++++G+ K FGF E+
Sbjct: 6 QEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYK 65
Query: 104 DPEVAEVVADAMHGYLLFEHILQV 127
D E A ++GY + L+V
Sbjct: 66 DQETALSAMRNLNGYEIGGRTLRV 89
>UNIPROTKB|D4A0P8 [details] [associations]
symbol:Dazl "Protein Dazl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0008494
"translation activator activity" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0045948 "positive
regulation of translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1591714 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00530000063480 CTD:1618 EMBL:CH473987
IPI:IPI00870381 RefSeq:NP_001102884.1 UniGene:Rn.136288
Ensembl:ENSRNOT00000066517 GeneID:680486 KEGG:rno:680486
NextBio:718813 Uniprot:D4A0P8
Length = 281
Score = 113 (44.8 bits), Expect = 0.00014, P = 0.00014
Identities = 37/114 (32%), Positives = 62/114 (54%)
Query: 40 GRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGF 99
G L E K + N TV ++G I E E+++FF+++G++K ++I ++ TG SK +GF
Sbjct: 29 GYVLPEGKIMPN--TV-FVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGF 84
Query: 100 IEF-NDPEVAEVVADAM--HGYLL-FEHILQVHLIPPEHVHPKLWRGFNPRYKP 149
+ F ND +V ++V + HG L ++ + HV P+ FNP P
Sbjct: 85 VSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQNLCTYHVQPRPLI-FNPPPPP 137
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + E ++ F FG I+ +++ + +TG+SK +GFI F+D E A+ + +
Sbjct: 95 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 154
Query: 116 HGYLL 120
+G+ L
Sbjct: 155 NGFEL 159
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 109 (43.4 bits), Expect = 0.00015, P = 0.00015
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 43 LTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEF 102
+T E+ + + +Y+G + +G E++ +F+ G + R+ I N+ TG K F +IEF
Sbjct: 55 MTHEERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKGFAYIEF 114
Query: 103 NDPE 106
+D E
Sbjct: 115 SDRE 118
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 110 (43.8 bits), Expect = 0.00015, P = 0.00015
Identities = 36/142 (25%), Positives = 65/142 (45%)
Query: 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEV 107
P V T L + + + ++ F ++G + + I R++ T +S+ F F+ F+D
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 108 AEVVADAMHGYLLFEHILQVHLI----PPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKE 163
AE DAM G +L L+V + PP+ H + RG PR P R + + +++
Sbjct: 68 AEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSR--RGPPPR-SPRRRRRSRSRSRSRS 124
Query: 164 RTLEEHKKLVEKILKRDQKRRK 185
R+ + K R + R +
Sbjct: 125 RSRSRSRYSRSKSRSRTRSRSR 146
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 117 (46.2 bits), Expect = 0.00015, P = 0.00015
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++IG + ++ ++ +FSQFG ++ + R+ TG+S+ FGF+ F DP+ V
Sbjct: 112 MFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTV---- 167
Query: 116 HGYLLFEHILQVHLIPPEHVHPK 138
++ EH L +I P+ P+
Sbjct: 168 ---MVKEHYLDGKIIDPKRAIPR 187
>UNIPROTKB|A3DUJ0 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like transcript variant
1" species:9913 "Bos taurus" [GO:0045948 "positive regulation of
translational initiation" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
eggNOG:NOG260394 GO:GO:0045948 GeneTree:ENSGT00530000063480
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 HOGENOM:HOG000246400
OMA:YVIPPAY EMBL:DAAA02003725 EMBL:DQ408764 EMBL:DQ408765
EMBL:EF501823 IPI:IPI00706010 RefSeq:NP_001075194.1
UniGene:Bt.63695 STRING:A3DUJ0 Ensembl:ENSBTAT00000048665
GeneID:530116 KEGG:bta:530116 InParanoid:A3DUJ0 NextBio:20875183
Uniprot:A3DUJ0
Length = 295
Score = 113 (44.8 bits), Expect = 0.00016, P = 0.00016
Identities = 37/114 (32%), Positives = 62/114 (54%)
Query: 40 GRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGF 99
G L E K + N TV ++G I E E+++FF+++G++K ++I ++ TG SK +GF
Sbjct: 29 GYVLPEGKIMPN--TV-FVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGF 84
Query: 100 IEF-NDPEVAEVVADAM--HGYLL-FEHILQVHLIPPEHVHPKLWRGFNPRYKP 149
+ F ND +V ++V + HG L ++ + HV P+ FNP P
Sbjct: 85 VSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQNLCAYHVQPRPLV-FNPPPPP 137
>UNIPROTKB|J9NTC5 [details] [associations]
symbol:DAZL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 CTD:1618 OMA:YVIPPAY EMBL:AAEX03013583
RefSeq:XP_534251.3 Ensembl:ENSCAFT00000046462 GeneID:477055
KEGG:cfa:477055 Uniprot:J9NTC5
Length = 295
Score = 113 (44.8 bits), Expect = 0.00016, P = 0.00016
Identities = 37/114 (32%), Positives = 62/114 (54%)
Query: 40 GRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGF 99
G L E K + N TV ++G I E E+++FF+++G++K ++I ++ TG SK +GF
Sbjct: 29 GYVLPEGKIMPN--TV-FVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGF 84
Query: 100 IEF-NDPEVAEVVADAM--HGYLL-FEHILQVHLIPPEHVHPKLWRGFNPRYKP 149
+ F ND +V ++V + HG L ++ + HV P+ FNP P
Sbjct: 85 VSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQNLCAYHVQPRPLV-FNPPPPP 137
>UNIPROTKB|I3LPX5 [details] [associations]
symbol:LOC100625706 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0045836 "positive regulation of
meiosis" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YVIPPAY
EMBL:FP312724 Ensembl:ENSSSCT00000022390 Uniprot:I3LPX5
Length = 298
Score = 113 (44.8 bits), Expect = 0.00016, P = 0.00016
Identities = 35/114 (30%), Positives = 61/114 (53%)
Query: 40 GRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGF 99
G L E K + N +++G I E E+++FF+++G++K ++I ++ TG SK +GF
Sbjct: 29 GYVLPEGKIMPN---TIFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGF 84
Query: 100 IEF-NDPEVAEVVADAM--HGYLL-FEHILQVHLIPPEHVHPKLWRGFNPRYKP 149
+ F ND +V ++V + HG L ++ + HV P+ FNP P
Sbjct: 85 VSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQNLCAYHVQPRPLV-FNPPPPP 137
>MGI|MGI:1342328 [details] [associations]
symbol:Dazl "deleted in azoospermia-like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=ISO;IDA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0044464 "cell part" evidence=IDA] [GO:0045836 "positive
regulation of meiosis" evidence=IMP] [GO:0045948 "positive
regulation of translational initiation" evidence=ISO;IDA]
[GO:0048477 "oogenesis" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1342328 GO:GO:0007275 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
eggNOG:NOG260394 GO:GO:0045948 GeneTree:ENSGT00530000063480
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 HOGENOM:HOG000246400
OMA:YVIPPAY EMBL:X95724 EMBL:U38690 EMBL:U46694 EMBL:AK014854
EMBL:AK033183 IPI:IPI00262067 RefSeq:NP_034151.3 UniGene:Mm.280641
PDB:2XS2 PDB:2XS5 PDB:2XS7 PDB:2XSF PDBsum:2XS2 PDBsum:2XS5
PDBsum:2XS7 PDBsum:2XSF ProteinModelPortal:Q64368 SMR:Q64368
IntAct:Q64368 MINT:MINT-133503 STRING:Q64368 PhosphoSite:Q64368
PaxDb:Q64368 PRIDE:Q64368 Ensembl:ENSMUST00000010736 GeneID:13164
KEGG:mmu:13164 UCSC:uc008cyv.2 InParanoid:Q64368
EvolutionaryTrace:Q64368 NextBio:283242 Bgee:Q64368 CleanEx:MM_DAZL
Genevestigator:Q64368 GermOnline:ENSMUSG00000010592 Uniprot:Q64368
Length = 298
Score = 113 (44.8 bits), Expect = 0.00016, P = 0.00016
Identities = 37/114 (32%), Positives = 62/114 (54%)
Query: 40 GRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGF 99
G L E K + N TV ++G I E E+++FF+++G++K ++I ++ TG SK +GF
Sbjct: 29 GYVLPEGKIMPN--TV-FVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGF 84
Query: 100 IEF-NDPEVAEVVADAM--HGYLL-FEHILQVHLIPPEHVHPKLWRGFNPRYKP 149
+ F ND +V ++V + HG L ++ + HV P+ FNP P
Sbjct: 85 VSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQNLCTYHVQPRPLI-FNPPPPP 137
>RGD|1591714 [details] [associations]
symbol:Dazl "deleted in azoospermia-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0007281 "germ cell development"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=IEA;ISO] [GO:0044464 "cell part" evidence=ISO] [GO:0045836
"positive regulation of meiosis" evidence=IEA;ISO] [GO:0045948
"positive regulation of translational initiation" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1591714 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008494 GO:GO:0003730 GO:GO:0007281
GO:GO:0005844 GO:GO:0045836 GO:GO:0045948 OrthoDB:EOG4T783S
EMBL:CH473987 UniGene:Rn.136288 IPI:IPI00765442
Ensembl:ENSRNOT00000039512 UCSC:RGD:1591714 Uniprot:D4A3C6
Length = 298
Score = 113 (44.8 bits), Expect = 0.00016, P = 0.00016
Identities = 37/114 (32%), Positives = 62/114 (54%)
Query: 40 GRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGF 99
G L E K + N TV ++G I E E+++FF+++G++K ++I ++ TG SK +GF
Sbjct: 29 GYVLPEGKIMPN--TV-FVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGF 84
Query: 100 IEF-NDPEVAEVVADAM--HGYLL-FEHILQVHLIPPEHVHPKLWRGFNPRYKP 149
+ F ND +V ++V + HG L ++ + HV P+ FNP P
Sbjct: 85 VSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQNLCTYHVQPRPLI-FNPPPPP 137
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 115 (45.5 bits), Expect = 0.00017, P = 0.00017
Identities = 30/96 (31%), Positives = 50/96 (52%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPE-VAEVVADA 114
L++G + ++ ++++FSQ+G + I ++K T QS+ FGF++F DP V V+A
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 115 MH---GYLLFEHILQVHLIPPEHVHPKL-WRGFNPR 146
H G + + PE PK W+G PR
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWKG--PR 105
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 115 (45.5 bits), Expect = 0.00017, P = 0.00017
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEV 110
NK +Y+G + F E M +Q G + L + ++ + + +GF+EF+ PE A+
Sbjct: 9 NKEATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADY 68
Query: 111 VADAMHGYLLFEHILQVH 128
A A++G +F +++V+
Sbjct: 69 AARALNGIRVFGKVIRVN 86
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 114 (45.2 bits), Expect = 0.00017, P = 0.00017
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 44 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 103
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 104 TLNGLRLQTKTIKVSYARP 122
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 115 (45.5 bits), Expect = 0.00017, P = 0.00017
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 332 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 391
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 392 NGFQIGMKRLKVQLKRPK 409
>UNIPROTKB|Q641B2 [details] [associations]
symbol:eif3g-b "Eukaryotic translation initiation factor 3
subunit G-B" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC082427
RefSeq:NP_001087888.1 UniGene:Xl.3547 ProteinModelPortal:Q641B2
SMR:Q641B2 PRIDE:Q641B2 GeneID:447749 KEGG:xla:447749
Xenbase:XB-GENE-6070476 Uniprot:Q641B2
Length = 308
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 36/118 (30%), Positives = 56/118 (47%)
Query: 18 SQLPVPSDKKGAADFLPLEGGP--GRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFS 75
+Q PV K L +GG G + + + AT+ + + E ++Q F
Sbjct: 191 AQAPVSKTGKYVPPSLR-DGGSRRGESMQPNRRADDNATIR-VTNLSEDTRETDLQELFR 248
Query: 76 QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TGQSK F FI F+ E A + G+ ++H IL V P
Sbjct: 249 PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDHLILNVEWAKP 305
>UNIPROTKB|Q6DJI8 [details] [associations]
symbol:eif3g-a "Eukaryotic translation initiation factor 3
subunit G-A" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 EMBL:BC075190 RefSeq:NP_001086477.1
UniGene:Xl.48772 ProteinModelPortal:Q6DJI8 SMR:Q6DJI8 GeneID:446311
KEGG:xla:446311 CTD:446311 Xenbase:XB-GENE-6251503
HOVERGEN:HBG026850 Uniprot:Q6DJI8
Length = 308
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 36/118 (30%), Positives = 56/118 (47%)
Query: 18 SQLPVPSDKKGAADFLPLEGGP--GRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFS 75
+Q PV K L +GG G + + + AT+ + + E ++Q F
Sbjct: 191 AQAPVSKTGKYVPPSLR-DGGSRRGESMQPNRRADDNATIR-VTNLSEDTRETDLQELFR 248
Query: 76 QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TGQSK F FI F+ E A + G+ ++H IL V P
Sbjct: 249 PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDHLILNVEWAKP 305
>UNIPROTKB|Q28CY2 [details] [associations]
symbol:eif3g "Eukaryotic translation initiation factor 3
subunit G" species:8364 "Xenopus (Silurana) tropicalis" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
CTD:446311 HOVERGEN:HBG026850 HOGENOM:HOG000239560 EMBL:CR855811
EMBL:BC158150 RefSeq:NP_001016749.1 UniGene:Str.41964
ProteinModelPortal:Q28CY2 SMR:Q28CY2 STRING:Q28CY2
Ensembl:ENSXETT00000047701 GeneID:549503 KEGG:xtr:549503
Xenbase:XB-GENE-6070198 Bgee:Q28CY2 Uniprot:Q28CY2
Length = 310
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 36/118 (30%), Positives = 56/118 (47%)
Query: 18 SQLPVPSDKKGAADFLPLEGGP--GRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFS 75
+Q PV K L +GG G + + + AT+ + + E ++Q F
Sbjct: 193 AQAPVSKTGKYVPPSLR-DGGSRRGESMQPNRRADDNATIR-VTNLSEDTRETDLQELFR 250
Query: 76 QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TGQSK F FI F+ E A + G+ ++H IL V P
Sbjct: 251 PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDHLILNVEWAKP 307
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 115 (45.5 bits), Expect = 0.00018, P = 0.00018
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + E ++ F FG I+ +++ + +TG+SK +GFI F+D E A+ + +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 116 HGYLL 120
+G+ L
Sbjct: 312 NGFEL 316
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 114 (45.2 bits), Expect = 0.00018, P = 0.00018
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 106 TLNGLRLQTKTIKVSYARP 124
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 114 (45.2 bits), Expect = 0.00018, P = 0.00018
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 106 TLNGLRLQTKTIKVSYARP 124
>UNIPROTKB|F1P661 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 EMBL:AAEX03000263
Ensembl:ENSCAFT00000000593 OMA:ERDGHYG NextBio:20858300
Uniprot:F1P661
Length = 526
Score = 116 (45.9 bits), Expect = 0.00018, P = 0.00018
Identities = 32/121 (26%), Positives = 60/121 (49%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
VL++ ++ +++++ FS+FG I+ + R+ KTG+S + FIEF E E
Sbjct: 275 VLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFK 334
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M L+ + ++H+ + V W+G +Y D + E++ Q+K L K+
Sbjct: 335 MDNVLIDDR--RIHVDFSQSVAKVKWKGKGGKYTKSDFKEYEKE-QDKSSNLVLKDKVKP 391
Query: 175 K 175
K
Sbjct: 392 K 392
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 105 (42.0 bits), Expect = 0.00019, P = 0.00019
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G + E+ ++ F FG I + + ++++T +S+ FGFI F DPE A AM
Sbjct: 8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67
Query: 116 HG 117
+G
Sbjct: 68 NG 69
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 111 TLNGLRLQTKTIKVSYARP 129
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 111 TLNGLRLQTKTIKVSYARP 129
>UNIPROTKB|F2Z4J5 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 IPI:IPI00700187 UniGene:Bt.49351 OMA:NSEFDAP
EMBL:DAAA02019449 ProteinModelPortal:F2Z4J5 SMR:F2Z4J5 PRIDE:F2Z4J5
Ensembl:ENSBTAT00000003545 Uniprot:F2Z4J5
Length = 320
Score = 113 (44.8 bits), Expect = 0.00019, P = 0.00019
Identities = 35/118 (29%), Positives = 57/118 (48%)
Query: 21 PVPSDKKGAADFLP--LEGGPGRKLTEEKP---LVNKATVLYIGRIPHGFYEKEMQAFFS 75
PV + + ++P L G R+ +P + AT+ + + E ++Q F
Sbjct: 202 PVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIR-VTNLSEDTRETDLQELFR 260
Query: 76 QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TGQSK F FI F+ E A + G+ ++H IL V P
Sbjct: 261 PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDHLILNVEWAKP 317
>UNIPROTKB|Q3ZC12 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0006413 "translational
initiation" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=ISS] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
KO:K03248 HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC102984 IPI:IPI00700187
RefSeq:NP_001073091.1 UniGene:Bt.49351 ProteinModelPortal:Q3ZC12
SMR:Q3ZC12 STRING:Q3ZC12 PRIDE:Q3ZC12 GeneID:615695 KEGG:bta:615695
CTD:8666 HOGENOM:HOG000239560 InParanoid:Q3ZC12 OrthoDB:EOG4Z0B62
NextBio:20899745 Uniprot:Q3ZC12
Length = 320
Score = 113 (44.8 bits), Expect = 0.00019, P = 0.00019
Identities = 35/118 (29%), Positives = 57/118 (48%)
Query: 21 PVPSDKKGAADFLP--LEGGPGRKLTEEKP---LVNKATVLYIGRIPHGFYEKEMQAFFS 75
PV + + ++P L G R+ +P + AT+ + + E ++Q F
Sbjct: 202 PVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIR-VTNLSEDTRETDLQELFR 260
Query: 76 QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TGQSK F FI F+ E A + G+ ++H IL V P
Sbjct: 261 PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDHLILNVEWAKP 317
>UNIPROTKB|O75821 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IC;IDA;TAS]
[GO:0003743 "translation initiation factor activity"
evidence=IC;IDA] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] Reactome:REACT_71 Reactome:REACT_17015
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 GO:GO:0048471 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724
GO:GO:0005852 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850
Reactome:REACT_1762 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP EMBL:U96074 EMBL:AF020833 EMBL:AF092453 EMBL:AF094850
EMBL:BT006889 EMBL:BC000733 EMBL:BC008469 IPI:IPI00290460
RefSeq:NP_003746.2 UniGene:Hs.529059 PDB:2CQ0 PDBsum:2CQ0
ProteinModelPortal:O75821 SMR:O75821 DIP:DIP-31115N IntAct:O75821
MINT:MINT-3001737 STRING:O75821 PhosphoSite:O75821 PaxDb:O75821
PeptideAtlas:O75821 PRIDE:O75821 DNASU:8666 Ensembl:ENST00000253108
GeneID:8666 KEGG:hsa:8666 UCSC:uc002mnd.3 GeneCards:GC19M010225
HGNC:HGNC:3274 HPA:HPA041997 MIM:603913 neXtProt:NX_O75821
PharmGKB:PA162384827 InParanoid:O75821 PhylomeDB:O75821
ChiTaRS:EIF3G EvolutionaryTrace:O75821 GenomeRNAi:8666
NextBio:32507 Bgee:O75821 CleanEx:HS_EIF3G Genevestigator:O75821
GermOnline:ENSG00000130811 Uniprot:O75821
Length = 320
Score = 113 (44.8 bits), Expect = 0.00019, P = 0.00019
Identities = 35/118 (29%), Positives = 57/118 (48%)
Query: 21 PVPSDKKGAADFLP--LEGGPGRKLTEEKP---LVNKATVLYIGRIPHGFYEKEMQAFFS 75
PV + + ++P L G R+ +P + AT+ + + E ++Q F
Sbjct: 202 PVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIR-VTNLSEDTRETDLQELFR 260
Query: 76 QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TGQSK F FI F+ E A + G+ ++H IL V P
Sbjct: 261 PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDHLILNVEWAKP 317
>UNIPROTKB|E7EV40 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010139
HGNC:HGNC:2685 IPI:IPI00927411 ProteinModelPortal:E7EV40 SMR:E7EV40
Ensembl:ENST00000454457 ArrayExpress:E7EV40 Bgee:E7EV40
Uniprot:E7EV40
Length = 204
Score = 109 (43.4 bits), Expect = 0.00019, P = 0.00019
Identities = 33/103 (32%), Positives = 58/103 (56%)
Query: 40 GRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGF 99
G L E K + N TV ++G I E E+++FF+++G++K ++I ++ TG SK +GF
Sbjct: 67 GYILPEGKIMPN--TV-FVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGF 122
Query: 100 IEF-NDPEVAEVVADAM--HGYLL-FEHILQVHLIPPEHVHPK 138
+ F ND +V ++V + HG L ++ + HV P+
Sbjct: 123 VSFFNDVDVQKIVESQINFHGKKLKLGPAIRKQNLCAYHVQPR 165
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 99 TLNGLRLQTKTIKVSYARP 117
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 99 TLNGLRLQTKTIKVSYARP 117
>UNIPROTKB|F1S3I3 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9823 "Sus scrofa" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 OMA:NSEFDAP EMBL:CU462940 Ensembl:ENSSSCT00000014925
Uniprot:F1S3I3
Length = 322
Score = 113 (44.8 bits), Expect = 0.00019, P = 0.00019
Identities = 35/118 (29%), Positives = 57/118 (48%)
Query: 21 PVPSDKKGAADFLP--LEGGPGRKLTEEKP---LVNKATVLYIGRIPHGFYEKEMQAFFS 75
PV + + ++P L G R+ +P + AT+ + + E ++Q F
Sbjct: 204 PVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIR-VTNLSEDTRETDLQELFR 262
Query: 76 QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TGQSK F FI F+ E A + G+ ++H IL V P
Sbjct: 263 PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDHLILNVEWAKP 319
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAE 109
+N+A+ +YIG I E ++++ FSQFG + + +N TG+ K FGF++F + A+
Sbjct: 765 INEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSAD 824
Query: 110 VVADAMHGYLLFEHILQV 127
M+G+ L ++V
Sbjct: 825 DAIATMNGFELLGRSIKV 842
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 106 TLNGLRLQTKTIKVSYARP 124
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 106 TLNGLRLQTKTIKVSYARP 124
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 114 (45.2 bits), Expect = 0.00020, P = 0.00020
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 62 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 121
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 122 TLNGLRLQTKTIKVSYARP 140
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 114 (45.2 bits), Expect = 0.00020, P = 0.00020
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 50 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 109
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 110 TLNGLRLQTKTIKVSYARP 128
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 114 (45.2 bits), Expect = 0.00020, P = 0.00020
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 111 TLNGLRLQTKTIKVSYARP 129
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 114 (45.2 bits), Expect = 0.00020, P = 0.00020
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 111 TLNGLRLQTKTIKVSYARP 129
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 437
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 438 NGFQIGMKRLKVQLKRPK 455
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 442 NGFQIGMKRLKVQLKRPK 459
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 442 NGFQIGMKRLKVQLKRPK 459
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 442 NGFQIGMKRLKVQLKRPK 459
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 110 (43.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP A+ +
Sbjct: 38 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 97
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 98 TLNGLKLQTKTIKVSYARP 116
Score = 38 (18.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 127 VHLIPPEHVHPKLWRGFNPRYKPVDRVQVER 157
V+ + PE LW+ F P + V V+V R
Sbjct: 280 VYNLSPEADESVLWQLFGP-FGAVTNVKVIR 309
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 115 (45.5 bits), Expect = 0.00021, P = 0.00021
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 383 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 442
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 443 NGFQIGMKRLKVQLKRPK 460
>ZFIN|ZDB-GENE-040426-1076 [details] [associations]
symbol:eif3g "eukaryotic translation initiation
factor 3, subunit G" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;ISS] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1076 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
HSSP:O75821 GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:AY648835 EMBL:BC049046 EMBL:BC153489 IPI:IPI00500209
RefSeq:NP_957293.1 UniGene:Dr.161 ProteinModelPortal:Q6DRC4
SMR:Q6DRC4 STRING:Q6DRC4 PRIDE:Q6DRC4 Ensembl:ENSDART00000018071
Ensembl:ENSDART00000127487 GeneID:393974 KEGG:dre:393974
InParanoid:Q7ZUH3 OMA:NSEFDAP NextBio:20814945 Bgee:Q6DRC4
Uniprot:Q6DRC4
Length = 293
Score = 112 (44.5 bits), Expect = 0.00021, P = 0.00021
Identities = 31/102 (30%), Positives = 51/102 (50%)
Query: 36 EGGP--GRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ 93
+GG G + + + AT+ + + E ++Q F FG+I R+ +A++K TGQ
Sbjct: 193 DGGTRRGESMQPNRRADDNATIR-VTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQ 251
Query: 94 SKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQVHLIPPEH 134
SK F FI F+ E A + G+ ++H IL V P +
Sbjct: 252 SKGFAFISFHRREDAARAIAGVSGFG-YDHLILNVEWAKPSN 292
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 108 (43.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G + ++ ++ +FSQ+G + I ++K T QS+ FGF++F DP V D
Sbjct: 13 LFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDTK 72
Query: 116 HGYLLFEHILQVHLIPPEHVHPKLWRGFNP-RYKPVDRVQVERKLQNKERTL 166
H L I P+ P RG P + + D + + NK + +
Sbjct: 73 ------PHNLDGRNIDPKPCTP---RGMQPEKTRTKDGWKGSKSDSNKSKKI 115
Score = 42 (19.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 178 KRDQKRRKRIEAAGIEYECPE 198
K D + K+I GI + C E
Sbjct: 106 KSDSNKSKKIFVGGIPHNCGE 126
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 105 (42.0 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEV 110
N + +++G + E+++++ F ++G I +I + TG+ + FGFI F D A+
Sbjct: 9 NLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADD 68
Query: 111 VADAMHGYLLFEHILQVHLIPPE 133
MHG L ++ V+ P+
Sbjct: 69 AIKHMHGRELGNKVISVNKAEPK 91
Score = 41 (19.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 146 RYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKR 186
+Y+P D ER +R + + + E L+ + + R+R
Sbjct: 201 KYEPRDHYPFERYAPPGDRFVSDRYGMPEHHLENEYRGRER 241
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 114 (45.2 bits), Expect = 0.00022, P = 0.00022
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 88 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 147
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 148 TLNGLRLQTKTIKVSYARP 166
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 109 (43.4 bits), Expect = 0.00022, P = 0.00022
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + E ++ F FG I + + ++ TG+SK +GFI F+D E A + +
Sbjct: 40 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 99
Query: 116 HGYLL 120
+G+ L
Sbjct: 100 NGFEL 104
>UNIPROTKB|F1N6W2 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 KO:K12735 OMA:DRTQNRS CTD:85313
EMBL:DAAA02027047 EMBL:DAAA02027048 EMBL:DAAA02027049
EMBL:DAAA02027050 IPI:IPI00716338 RefSeq:NP_001193016.1
UniGene:Bt.9312 ProteinModelPortal:F1N6W2
Ensembl:ENSBTAT00000022582 GeneID:535676 KEGG:bta:535676
NextBio:20876809 ArrayExpress:F1N6W2 Uniprot:F1N6W2
Length = 492
Score = 115 (45.5 bits), Expect = 0.00022, P = 0.00022
Identities = 32/121 (26%), Positives = 60/121 (49%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
VL++ ++ +++++ FS+FG I+ + R+ KTG+S + FIEF E E
Sbjct: 241 VLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFK 300
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M L+ + ++H+ + V W+G +Y D + E++ Q+K L K+
Sbjct: 301 MDNVLIDDR--RIHVDFSQSVAKVKWKGKGGKYTKSDFKEYEKE-QDKPSNLVLKDKVKP 357
Query: 175 K 175
K
Sbjct: 358 K 358
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 115 (45.5 bits), Expect = 0.00022, P = 0.00022
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 411 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 470
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 471 NGFQIGMKRLKVQLKRPK 488
>RGD|1307630 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307630 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026 GO:GO:0006376
GeneTree:ENSGT00560000076837 GO:GO:0000381 IPI:IPI00870309
Ensembl:ENSRNOT00000061151 ArrayExpress:F1M6I9 Uniprot:F1M6I9
Length = 355
Score = 113 (44.8 bits), Expect = 0.00023, P = 0.00023
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 272 LLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASAQTAIQAM 331
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 332 NGFQIGMKRLKVQLKRPK 349
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 93 (37.8 bits), Expect = 0.00023, P = 0.00023
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+IG + EK ++A F ++G I + + ++++T +S+ F F+ F P A+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 116 HG 117
+G
Sbjct: 70 NG 71
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 93 (37.8 bits), Expect = 0.00023, P = 0.00023
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+IG + EK ++A F ++G I + + ++++T +S+ F F+ F P A+ A M
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 116 HG 117
+G
Sbjct: 72 NG 73
>POMBASE|SPBC887.05c [details] [associations]
symbol:cwf29 "RNA-binding protein Cwf29" species:4896
"Schizosaccharomyces pombe" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC887.05c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0000245 GO:GO:0005686 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 HSSP:Q14103 PIR:T40730
RefSeq:NP_596479.1 ProteinModelPortal:O94290 IntAct:O94290
STRING:O94290 EnsemblFungi:SPBC887.05c.1 GeneID:2541212
KEGG:spo:SPBC887.05c OrthoDB:EOG441TN4 NextBio:20802324
Uniprot:O94290
Length = 217
Score = 109 (43.4 bits), Expect = 0.00023, P = 0.00023
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+YIG + E ++ FS+FG + + R+K+TG+SK F F+++ D + D M
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 116 HGYLLFEHILQV 127
L + +++V
Sbjct: 93 TNVKLLDRLVRV 104
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 111 (44.1 bits), Expect = 0.00024, P = 0.00024
Identities = 37/119 (31%), Positives = 56/119 (47%)
Query: 34 PLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ 93
P GP EEK + A +Y+G + +G +E++A F G++ R+ I +K +G
Sbjct: 122 PGNAGPVIMSIEEK-MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGH 180
Query: 94 SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLW---RGF-NPRYK 148
K F +IEF+D E V LF Q+ +IP P + RGF RY+
Sbjct: 181 PKGFAYIEFSDKE--SVRTSLALDESLFRG-RQIKVIPKRTNRPGISTTDRGFPRARYR 236
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 115 (45.5 bits), Expect = 0.00024, P = 0.00024
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + E ++ F FG I+ +++ + +TG+SK +GFI F+D E A+ + +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 116 HGYLL 120
+G+ L
Sbjct: 312 NGFEL 316
>UNIPROTKB|I3L1D4 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
Ensembl:ENST00000570626 Bgee:I3L1D4 Uniprot:I3L1D4
Length = 189
Score = 107 (42.7 bits), Expect = 0.00024, P = 0.00024
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 31 DFLPLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKK 90
D P +G P + +E ++ L++ IP F + +++ F QFG I + I N++
Sbjct: 96 DAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER 155
Query: 91 TGQSKHFGFIEFNDPEVAEVVADAMHG 117
G SK FGF+ F + A+ + +HG
Sbjct: 156 -G-SKGFGFVTFENSADADRAREKLHG 180
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 115 (45.5 bits), Expect = 0.00024, P = 0.00024
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + E ++ F FG I+ +++ + +TG+SK +GFI F+D E A+ + +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 116 HGYLL 120
+G+ L
Sbjct: 312 NGFEL 316
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 115 (45.5 bits), Expect = 0.00024, P = 0.00024
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + E ++ F FG I+ +++ + +TG+SK +GFI F+D E A+ + +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 116 HGYLL 120
+G+ L
Sbjct: 312 NGFEL 316
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 115 (45.5 bits), Expect = 0.00025, P = 0.00025
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + E ++ F FG I+ +++ + +TG+SK +GFI F+D E A+ + +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 116 HGYLL 120
+G+ L
Sbjct: 312 NGFEL 316
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 115 (45.5 bits), Expect = 0.00025, P = 0.00025
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + E ++ F FG I+ +++ + +TG+SK +GFI F+D E A+ + +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 116 HGYLL 120
+G+ L
Sbjct: 312 NGFEL 316
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 115 (45.5 bits), Expect = 0.00025, P = 0.00025
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + E ++ F FG I+ +++ + +TG+SK +GFI F+D E A+ + +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 116 HGYLL 120
+G+ L
Sbjct: 312 NGFEL 316
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 115 (45.5 bits), Expect = 0.00025, P = 0.00025
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + E ++ F FG I+ +++ + +TG+SK +GFI F+D E A+ + +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 116 HGYLL 120
+G+ L
Sbjct: 312 NGFEL 316
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 115 (45.5 bits), Expect = 0.00025, P = 0.00025
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + E ++ F FG I+ +++ + +TG+SK +GFI F+D E A+ + +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 116 HGYLL 120
+G+ L
Sbjct: 312 NGFEL 316
>UNIPROTKB|E2RGG6 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9615 "Canis lupus familiaris" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 KO:K03248 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 CTD:8666 OMA:NSEFDAP
EMBL:AAEX03012427 RefSeq:XP_854113.1 ProteinModelPortal:E2RGG6
Ensembl:ENSCAFT00000028426 GeneID:612971 KEGG:cfa:612971
NextBio:20898427 Uniprot:E2RGG6
Length = 320
Score = 112 (44.5 bits), Expect = 0.00025, P = 0.00025
Identities = 35/118 (29%), Positives = 57/118 (48%)
Query: 21 PVPSDKKGAADFLP--LEGGPGRKLTEEKP---LVNKATVLYIGRIPHGFYEKEMQAFFS 75
PV + + ++P L G R+ +P + AT+ + + E ++Q F
Sbjct: 202 PVQAAQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIR-VTNLSEDTRETDLQELFR 260
Query: 76 QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TGQSK F FI F+ E A + G+ ++H IL V P
Sbjct: 261 PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDHLILNVEWAKP 317
>MGI|MGI:1858258 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISO;IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=ISO;IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1858258 GO:GO:0005634 GO:GO:0048471
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP ChiTaRS:EIF3G EMBL:U70733 EMBL:AF108214 EMBL:BC008511
IPI:IPI00622371 RefSeq:NP_058572.2 UniGene:Mm.427309
ProteinModelPortal:Q9Z1D1 SMR:Q9Z1D1 IntAct:Q9Z1D1
MINT:MINT-1572167 STRING:Q9Z1D1 PhosphoSite:Q9Z1D1
REPRODUCTION-2DPAGE:Q9Z1D1 PaxDb:Q9Z1D1 PRIDE:Q9Z1D1
Ensembl:ENSMUST00000004206 GeneID:53356 KEGG:mmu:53356
InParanoid:Q9Z1D1 NextBio:310169 Bgee:Q9Z1D1 Genevestigator:Q9Z1D1
GermOnline:ENSMUSG00000070319 Uniprot:Q9Z1D1
Length = 320
Score = 112 (44.5 bits), Expect = 0.00025, P = 0.00025
Identities = 35/118 (29%), Positives = 57/118 (48%)
Query: 21 PVPSDKKGAADFLP--LEGGPGRKLTEEKP---LVNKATVLYIGRIPHGFYEKEMQAFFS 75
PV + + ++P L G R+ +P + AT+ + + E ++Q F
Sbjct: 202 PVQAAQSKTGKYVPPSLRDGASRRGESMQPNRRADDNATIR-VTNLSEDTRETDLQELFR 260
Query: 76 QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TGQSK F FI F+ E A + G+ ++H IL V P
Sbjct: 261 PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDHLILNVEWAKP 317
>RGD|1307191 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=IEA;ISO;ISS] [GO:0006413
"translational initiation" evidence=ISO;ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 112 (44.5 bits), Expect = 0.00025, P = 0.00025
Identities = 35/118 (29%), Positives = 57/118 (48%)
Query: 21 PVPSDKKGAADFLP--LEGGPGRKLTEEKP---LVNKATVLYIGRIPHGFYEKEMQAFFS 75
PV + + ++P L G R+ +P + AT+ + + E ++Q F
Sbjct: 202 PVQAAQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIR-VTNLSEDTRETDLQELFR 260
Query: 76 QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TGQSK F FI F+ E A + G+ ++H IL V P
Sbjct: 261 PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDHLILNVEWAKP 317
>UNIPROTKB|Q5RK09 [details] [associations]
symbol:Eif3g "Eukaryotic translation initiation factor 3
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 112 (44.5 bits), Expect = 0.00025, P = 0.00025
Identities = 35/118 (29%), Positives = 57/118 (48%)
Query: 21 PVPSDKKGAADFLP--LEGGPGRKLTEEKP---LVNKATVLYIGRIPHGFYEKEMQAFFS 75
PV + + ++P L G R+ +P + AT+ + + E ++Q F
Sbjct: 202 PVQAAQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIR-VTNLSEDTRETDLQELFR 260
Query: 76 QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TGQSK F FI F+ E A + G+ ++H IL V P
Sbjct: 261 PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDHLILNVEWAKP 317
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 115 (45.5 bits), Expect = 0.00025, P = 0.00025
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 456 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 515
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 516 NGFQIGMKRLKVQLKRPK 533
>FB|FBgn0005648 [details] [associations]
symbol:Pabp2 "Pabp2" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS;IDA] [GO:0006378
"mRNA polyadenylation" evidence=ISS;IMP;IDA] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:AE013599
GO:GO:0005737 GO:GO:0022008 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:NOG238057 GO:GO:0000289 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 EMBL:L23873 EMBL:L34934 EMBL:AF116341
EMBL:AY070631 EMBL:AY075519 RefSeq:NP_476902.1 RefSeq:NP_724648.1
UniGene:Dm.521 ProteinModelPortal:Q7KNF2 SMR:Q7KNF2 IntAct:Q7KNF2
STRING:Q7KNF2 PaxDb:Q7KNF2 PRIDE:Q7KNF2 EnsemblMetazoa:FBtr0088785
EnsemblMetazoa:FBtr0088786 GeneID:35788 KEGG:dme:Dmel_CG2163
CTD:35788 FlyBase:FBgn0005648 InParanoid:Q7KNF2 OMA:GRANYYA
OrthoDB:EOG4V9S6S PhylomeDB:Q7KNF2 ChiTaRS:PABP2 GenomeRNAi:35788
NextBio:795217 Bgee:Q7KNF2 GermOnline:CG2163 Uniprot:Q7KNF2
Length = 224
Score = 109 (43.4 bits), Expect = 0.00026, P = 0.00026
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 45 EEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFND 104
EEK ++ +V Y+G + +G +E++A F G I R+ I NK G K F +IEF
Sbjct: 88 EEKQEIDTRSV-YVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGS 146
Query: 105 PEVAEVVADAMH 116
E E A AM+
Sbjct: 147 KEFVET-ALAMN 157
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 109 (43.4 bits), Expect = 0.00026, P = 0.00026
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPE-VAEVVADA 114
L++G + ++ ++++FSQ+G + I ++K T QS+ FGF++F DP V V+A
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 115 MH 116
H
Sbjct: 72 PH 73
>UNIPROTKB|Q28ZX3 [details] [associations]
symbol:Pabp2 "Polyadenylate-binding protein 2"
species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0042802 "identical protein binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0042802 EMBL:CM000071 GenomeReviews:CM000071_GR
eggNOG:NOG238057 GO:GO:0008143 KO:K14396 OMA:GRANYYA
OrthoDB:EOG4V9S6S RefSeq:XP_001360914.1 ProteinModelPortal:Q28ZX3
SMR:Q28ZX3 GeneID:4804339 KEGG:dpo:Dpse_GA15278 FlyBase:FBgn0075302
InParanoid:Q28ZX3 Uniprot:Q28ZX3
Length = 225
Score = 109 (43.4 bits), Expect = 0.00026, P = 0.00026
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 45 EEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFND 104
EEK ++ +V Y+G + +G +E++A F G I R+ I NK G K F +IEF
Sbjct: 88 EEKQEIDTRSV-YVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGS 146
Query: 105 PEVAEVVADAMH 116
E E A AM+
Sbjct: 147 KEFVET-ALAMN 157
>MGI|MGI:1919414 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
Length = 326
Score = 112 (44.5 bits), Expect = 0.00026, P = 0.00026
Identities = 40/143 (27%), Positives = 71/143 (49%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+++G +P+ E ++ FSQ+G I + + R+KKTG+SK F F+ + D + D
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 116 HGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNK------------E 163
+G + ++V +HV +R P+ + D V R+LQ K E
Sbjct: 98 NGIKIKGRTIRV-----DHVSN--YRA--PQ-ESEDVDDVTRELQEKGCGVKTPPSSPPE 147
Query: 164 RTLEEHKKLVEKILKRDQKRRKR 186
+ +E KL +K K+D+K +K+
Sbjct: 148 VSEDEDAKLTKKH-KKDKKEKKK 169
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 113 (44.8 bits), Expect = 0.00026, P = 0.00026
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E+++ F G I+ ++ R+K TGQS +GF+ + +P+ AE +
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAIN 127
Query: 114 AMHGYLLFEHILQVHLIPP 132
++G L ++V P
Sbjct: 128 TLNGLRLQTKTIKVSYARP 146
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 114 (45.2 bits), Expect = 0.00027, P = 0.00027
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAM 438
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 439 NGFQIGMKRLKVQLKRPK 456
>UNIPROTKB|G3X6K3 [details] [associations]
symbol:LOC534630 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13107
GeneTree:ENSGT00600000084414 OMA:VFSQNRY EMBL:DAAA02072184
RefSeq:NP_001193477.1 UniGene:Bt.88830 Ensembl:ENSBTAT00000008205
GeneID:534630 KEGG:bta:534630 NextBio:20876482 Uniprot:G3X6K3
Length = 330
Score = 112 (44.5 bits), Expect = 0.00027, P = 0.00027
Identities = 41/167 (24%), Positives = 77/167 (46%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+++G +P+ E ++ FSQ+G I + + +KKTG+SK F F+ + D + D
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVWDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 116 HGYLLFEHILQV-HL----IPPE-----HVHPKLW-RGFNPRYKPVDRVQVERKLQNKER 164
+G + ++V H+ +P + V +L RG P + ++
Sbjct: 98 NGIKIKGRTIRVDHVSNYRLPEDSEEMDEVTRELQERGCGTHTPPPSSSEGSED----DK 153
Query: 165 TLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIVGNVMPAPKKIK 211
++HKK +K K +K++K E G E + + + +P K IK
Sbjct: 154 PTKKHKK--DK--KEKKKKKKDKEKTGQEVQAEQPASSSLPRSKMIK 196
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 110 (43.8 bits), Expect = 0.00027, P = 0.00027
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 37 GGPGRKLTEEKPLVNKAT-VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSK 95
G P + A L++G + ++ ++++FSQ+G + I ++K T QS+
Sbjct: 37 GAPSHSSVSARKAAQAALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSR 96
Query: 96 HFGFIEFNDPE-VAEVVADAMH 116
FGF++F DP V V+A H
Sbjct: 97 GFGFVKFKDPNCVGTVLASRPH 118
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 117 (46.2 bits), Expect = 0.00028, P = 0.00028
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + ++ + F FG + ++ +K+T SK FGF+ +++P A AM
Sbjct: 810 LFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHSANAAIQAM 869
Query: 116 HGYLLFEHILQVHL 129
HG+ + L+V L
Sbjct: 870 HGFQIGSKRLKVQL 883
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 111 (44.1 bits), Expect = 0.00028, P = 0.00028
Identities = 37/119 (31%), Positives = 55/119 (46%)
Query: 34 PLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ 93
P GP EEK + A +Y+G + +G +E++A F G++ R+ I +K TG
Sbjct: 144 PGNAGPVIMSVEEK-MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGH 202
Query: 94 SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLW---RGF-NPRYK 148
K F +IEF D E V LF Q+ ++P P + RGF RY+
Sbjct: 203 PKGFAYIEFCDKE--SVRTSLALDESLFRG-RQIKVVPKRTNRPGISTTDRGFPRARYR 258
>POMBASE|SPAC25G10.01 [details] [associations]
symbol:SPAC25G10.01 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
Length = 297
Score = 111 (44.1 bits), Expect = 0.00028, P = 0.00028
Identities = 28/99 (28%), Positives = 44/99 (44%)
Query: 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEV 110
N L++ I E E+Q FS+FG + +RI R T S+ FGF+ F+ E A
Sbjct: 98 NLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATS 157
Query: 111 VADAMHGYLLFEHILQVHLIPPEHVH---PKLWRGFNPR 146
D ++ + +L V H P + G++ R
Sbjct: 158 AIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRR 196
>UNIPROTKB|Q8WUA2 [details] [associations]
symbol:PPIL4 "Peptidyl-prolyl cis-trans isomerase-like 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006457
"protein folding" evidence=IEA] [GO:0003755 "peptidyl-prolyl
cis-trans isomerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 EMBL:CH471051
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 EMBL:AL078581 HOGENOM:HOG000186284
KO:K12735 OMA:DRTQNRS EMBL:AF357880 EMBL:AK315388 EMBL:BX537536
EMBL:AL357619 EMBL:BC020986 IPI:IPI00642862 RefSeq:NP_624311.1
UniGene:Hs.740616 ProteinModelPortal:Q8WUA2 SMR:Q8WUA2
IntAct:Q8WUA2 MINT:MINT-1182736 STRING:Q8WUA2 PhosphoSite:Q8WUA2
DMDM:74760546 PaxDb:Q8WUA2 PeptideAtlas:Q8WUA2 PRIDE:Q8WUA2
DNASU:85313 Ensembl:ENST00000253329 GeneID:85313 KEGG:hsa:85313
UCSC:uc003qmo.2 CTD:85313 GeneCards:GC06M149867 HGNC:HGNC:15702
HPA:HPA031600 MIM:607609 neXtProt:NX_Q8WUA2 PharmGKB:PA33590
HOVERGEN:HBG057731 InParanoid:Q8WUA2 OrthoDB:EOG4QVCC7
PhylomeDB:Q8WUA2 GenomeRNAi:85313 NextBio:75805 ArrayExpress:Q8WUA2
Bgee:Q8WUA2 CleanEx:HS_PPIL4 Genevestigator:Q8WUA2
GermOnline:ENSG00000131013 Uniprot:Q8WUA2
Length = 492
Score = 114 (45.2 bits), Expect = 0.00029, P = 0.00029
Identities = 32/121 (26%), Positives = 60/121 (49%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
VL++ ++ +++++ FS+FG I+ + R+ KTG+S + FIEF E E
Sbjct: 241 VLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFK 300
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M L+ + ++H+ + V W+G +Y D + E++ Q+K L K+
Sbjct: 301 MDNVLIDDR--RIHVDFSQSVAKVKWKGKGGKYTKSDFKEYEKE-QDKPPNLVLKDKVKP 357
Query: 175 K 175
K
Sbjct: 358 K 358
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 111 (44.1 bits), Expect = 0.00029, P = 0.00029
Identities = 37/119 (31%), Positives = 56/119 (47%)
Query: 34 PLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ 93
P GP EEK + A +Y+G + +G +E++A F G++ R+ I +K +G
Sbjct: 149 PGNAGPVIMSLEEK-MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGH 207
Query: 94 SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLW---RGF-NPRYK 148
K F +IEF+D E V LF Q+ +IP P + RGF RY+
Sbjct: 208 PKGFAYIEFSDKE--SVRTSLALDESLFRG-RQIKVIPKRTNRPGISTTDRGFPRSRYR 263
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 111 (44.1 bits), Expect = 0.00029, P = 0.00029
Identities = 37/119 (31%), Positives = 56/119 (47%)
Query: 34 PLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ 93
P GP EEK + A +Y+G + +G +E++A F G++ R+ I +K +G
Sbjct: 149 PGNAGPVIMSLEEK-MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGH 207
Query: 94 SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLW---RGF-NPRYK 148
K F +IEF+D E V LF Q+ +IP P + RGF RY+
Sbjct: 208 PKGFAYIEFSDKE--SVRTSLALDESLFRG-RQIKVIPKRTNRPGISTTDRGFPRARYR 263
>UNIPROTKB|A4RHN3 [details] [associations]
symbol:TIF35 "Eukaryotic translation initiation factor 3
subunit G" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 EMBL:CM001232 eggNOG:COG0724 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:XP_003715298.1 ProteinModelPortal:A4RHN3 STRING:A4RHN3
GeneID:2682994 KEGG:mgr:MGG_07109 OrthoDB:EOG4QJVX7 Uniprot:A4RHN3
Length = 303
Score = 111 (44.1 bits), Expect = 0.00030, P = 0.00030
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 37 GGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKH 96
GG G K E L AT L + + E+E++ F +FG + R+ +A+++ TG +K
Sbjct: 210 GGAGGKYGERDDL---AT-LRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKG 265
Query: 97 FGFIEFNDPEVAEVVADAMHGYLLFEHIL 125
F FI F D E A + M G+ F+H++
Sbjct: 266 FAFISFADREDAVKACNKMDGWG-FKHLI 293
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 111 (44.1 bits), Expect = 0.00030, P = 0.00030
Identities = 37/119 (31%), Positives = 56/119 (47%)
Query: 34 PLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ 93
P GP EEK + A +Y+G + +G +E++A F G++ R+ I +K +G
Sbjct: 153 PGNAGPVIMSIEEK-MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGH 211
Query: 94 SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLW---RGF-NPRYK 148
K F +IEF+D E V LF Q+ +IP P + RGF RY+
Sbjct: 212 PKGFAYIEFSDKE--SVRTSLALDESLFRG-RQIKVIPKRTNRPGISTTDRGFPRARYR 267
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 111 (44.1 bits), Expect = 0.00030, P = 0.00030
Identities = 37/119 (31%), Positives = 56/119 (47%)
Query: 34 PLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ 93
P GP EEK + A +Y+G + +G +E++A F G++ R+ I +K +G
Sbjct: 153 PGNAGPVIMSIEEK-MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGH 211
Query: 94 SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLW---RGF-NPRYK 148
K F +IEF+D E V LF Q+ +IP P + RGF RY+
Sbjct: 212 PKGFAYIEFSDKE--SVRTSLALDESLFRG-RQIKVIPKRTNRPGISTTDRGFPRARYR 267
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 111 (44.1 bits), Expect = 0.00030, P = 0.00030
Identities = 37/119 (31%), Positives = 56/119 (47%)
Query: 34 PLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ 93
P GP EEK + A +Y+G + +G +E++A F G++ R+ I +K +G
Sbjct: 153 PGNAGPVIMSIEEK-MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGH 211
Query: 94 SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLW---RGF-NPRYK 148
K F +IEF+D E V LF Q+ +IP P + RGF RY+
Sbjct: 212 PKGFAYIEFSDKE--SVRTSLALDESLFRG-RQIKVIPKRTNRPGISTTDRGFPRARYR 267
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 111 (44.1 bits), Expect = 0.00030, P = 0.00030
Identities = 37/119 (31%), Positives = 56/119 (47%)
Query: 34 PLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ 93
P GP EEK + A +Y+G + +G +E++A F G++ R+ I +K +G
Sbjct: 153 PGNAGPVIMSIEEK-MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGH 211
Query: 94 SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLW---RGF-NPRYK 148
K F +IEF+D E V LF Q+ +IP P + RGF RY+
Sbjct: 212 PKGFAYIEFSDKE--SVRTSLALDESLFRG-RQIKVIPKRTNRPGISTTDRGFPRARYR 267
>UNIPROTKB|G4N9S1 [details] [associations]
symbol:MGG_10681 "Peptidyl-prolyl cis-trans isomerase-like
4" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 GO:GO:0006457
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581
EMBL:CM001234 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413 KO:K12735
RefSeq:XP_003715897.1 EnsemblFungi:MGG_10681T0 GeneID:2682882
KEGG:mgr:MGG_10681 Uniprot:G4N9S1
Length = 505
Score = 114 (45.2 bits), Expect = 0.00030, P = 0.00030
Identities = 32/117 (27%), Positives = 50/117 (42%)
Query: 25 DKKGAADFLPLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLR 84
+++ A L LE E KP N VL++ ++ + +++ FS+FG I
Sbjct: 231 EREAKAQALTLEMMGDLPFAEVKPPEN---VLFVCKLNPVTQDADLELIFSRFGKILSCE 287
Query: 85 IARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWR 141
+ R+ KTG S + FIEF D E M G L+ + + V WR
Sbjct: 288 VIRDSKTGDSLQYAFIEFEDKAACETAYFKMQGVLIDDRRIHVDFSQSVSKLSNAWR 344
>DICTYBASE|DDB_G0279695 [details] [associations]
symbol:DDB_G0279695 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0279695 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000032 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_641604.1
ProteinModelPortal:Q54WE9 PRIDE:Q54WE9 EnsemblProtists:DDB0233747
GeneID:8622181 KEGG:ddi:DDB_G0279695 InParanoid:Q54WE9 OMA:HEMDGRQ
Uniprot:Q54WE9
Length = 84
Score = 92 (37.4 bits), Expect = 0.00030, P = 0.00030
Identities = 17/61 (27%), Positives = 36/61 (59%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+++ RIP + ++ FS+FG + + ++ T +SK FGF+ F++ E A+ +++
Sbjct: 5 IFVARIPWSICKIALKTHFSKFGPVSDGYVVLDRITKRSKGFGFVTFDNAESAQNAVNSV 64
Query: 116 H 116
H
Sbjct: 65 H 65
WARNING: HSPs involving 126 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.139 0.412 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 215 202 0.00090 111 3 11 22 0.50 32
31 0.46 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 376
No. of states in DFA: 583 (62 KB)
Total size of DFA: 161 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.23u 0.11s 25.34t Elapsed: 00:00:01
Total cpu time: 25.25u 0.11s 25.36t Elapsed: 00:00:01
Start: Thu May 9 23:12:23 2013 End: Thu May 9 23:12:24 2013
WARNINGS ISSUED: 2