BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028027
(215 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GL69|MK67I_XENTR MKI67 FHA domain-interacting nucleolar phosphoprotein-like
OS=Xenopus tropicalis GN=mki67ipl PE=2 SV=1
Length = 276
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 95/143 (66%), Gaps = 2/143 (1%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
V+YIG IP YE +++ +FSQFG + RLR++R+KKTG SK + ++EF EVA++VAD
Sbjct: 42 VIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADT 101
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M+ YL E +L+ +PPE VHP+L+ G +++ + V R NK R+ E KK+ +
Sbjct: 102 MNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKFRKPTKPAVSR--YNKRRSEAEQKKMTQ 159
Query: 175 KILKRDQKRRKRIEAAGIEYECP 197
++L ++ K RKR+ GI+Y+ P
Sbjct: 160 RMLSKENKVRKRLAEKGIDYDFP 182
>sp|Q8JIY8|MK67I_DANRE MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio
rerio GN=mki67ip PE=2 SV=2
Length = 269
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 102/159 (64%), Gaps = 13/159 (8%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
VLY+G +P G +E +++++F QFG + RLR++R+KKTG SK +GF+EF EVA++VA+
Sbjct: 46 VLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAET 105
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGF-----NPRYKPVDRVQVERKLQNKERTLEEH 169
M+ YL+ E I++ H+IPPE VH KL+ G P+Y V R NK T ++
Sbjct: 106 MNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAVTRY-------NKTHTEDDV 158
Query: 170 KKLVEKILKRDQKRRKRIEAAGIEYECPEIVGNVMPAPK 208
KK+ K+L ++ K RKR+ A GI+Y+ P + PA K
Sbjct: 159 KKVGTKLLSKESKLRKRLAAKGIDYDFPGFAAQI-PAKK 196
>sp|O74978|YQL5_SCHPO Uncharacterized RNA-binding protein C1827.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC1827.05c PE=4 SV=1
Length = 276
Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 91/135 (67%)
Query: 41 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFI 100
+K++E K L K VLY+GR+PHGFYEK+M+ +FSQFG + RLR++RN+KTG SKH+ FI
Sbjct: 92 KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151
Query: 101 EFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQ 160
EF +VA VVA+ MH YLL+ +LQ +IP + VH +++G + +K + + R
Sbjct: 152 EFESLDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKRIPHATIARLQH 211
Query: 161 NKERTLEEHKKLVEK 175
K + E+ KL+ +
Sbjct: 212 EKPLSKEKADKLITR 226
>sp|Q7SYS2|MK67I_XENLA MKI67 FHA domain-interacting nucleolar phosphoprotein-like
OS=Xenopus laevis GN=mki67ipl PE=2 SV=2
Length = 278
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 94/143 (65%), Gaps = 2/143 (1%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
V+YIG IP E ++Q +F+QFG + RLR++R+KKTG SK + ++E+ EVA++VAD
Sbjct: 42 VIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVADT 101
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M+ YL E +L+ + PE VHP+L+ G N R++ + V R N +R EE KK+ +
Sbjct: 102 MNNYLFCERLLKCEFVTPEKVHPRLFIGCNTRFRKPTKPAVTR--YNSKRNKEEVKKMTQ 159
Query: 175 KILKRDQKRRKRIEAAGIEYECP 197
+++ ++ K RKR+ GI+Y+ P
Sbjct: 160 RMISKEYKLRKRLAEKGIDYDFP 182
>sp|Q3SZM1|MK67I_BOVIN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus
GN=MKI67IP PE=2 SV=1
Length = 296
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 96/146 (65%), Gaps = 2/146 (1%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
V+Y+G +P YE +++A+FSQFG + R R++R+KKTG SK +GF+EF +VA++ A+
Sbjct: 46 VIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESEDVAKIAAET 105
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M+ YL E +L+ H IPPE VH +L+R ++ +K V+R QN R+L + ++ E
Sbjct: 106 MNNYLFGERLLKCHFIPPEKVHEELFREWHMPFKRPSYPAVKRYNQN--RSLVQKLRMEE 163
Query: 175 KILKRDQKRRKRIEAAGIEYECPEIV 200
+ K+++ RKR+ GI+Y P +V
Sbjct: 164 RFKKKEKLLRKRLAKKGIDYNFPSLV 189
>sp|P53927|NOP15_YEAST Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NOP15 PE=1 SV=1
Length = 220
Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 97/154 (62%), Gaps = 13/154 (8%)
Query: 41 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFI 100
+K ++K L + ++Y+ R+PHGF+EKE+ +F+QFG +K +R+ARNKKTG S+H+GF+
Sbjct: 78 KKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFL 137
Query: 101 EFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQ 160
EF + E A + ++M+ YLL H+LQV ++P KL YK RV VE+ +
Sbjct: 138 EFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKL-------YKYKKRVLVEKGIT 190
Query: 161 NKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEY 194
+ L+++ K ++ ++R K++ +GIE+
Sbjct: 191 KPVKQLKDNMK------QKHEERIKKLAKSGIEF 218
>sp|Q9BYG3|MK67I_HUMAN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Homo
sapiens GN=MKI67IP PE=1 SV=1
Length = 293
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 95/146 (65%), Gaps = 2/146 (1%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
V+Y+ +P+ E ++ ++FSQFG + R R++R+K+TG SK + F+EF +VA++VA+
Sbjct: 46 VVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAET 105
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M+ YL E +L+ H +PPE VH +L++ +N +K V+R N+ RTL + ++ E
Sbjct: 106 MNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKR--YNRNRTLTQKLRMEE 163
Query: 175 KILKRDQKRRKRIEAAGIEYECPEIV 200
+ K+++ RK++ GI+Y+ P ++
Sbjct: 164 RFKKKERLLRKKLAKKGIDYDFPSLI 189
>sp|Q5RJM0|MK67I_RAT MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Rattus
norvegicus GN=Mki67ip PE=2 SV=1
Length = 271
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
V+Y+G +P E + + +QFG I+R R++R+K+TG S+ F F+EF +VA++VA+
Sbjct: 45 VVYLGHLPSTLSESHIYDYCAQFGDIRRFRLSRSKRTGNSRGFAFVEFESEDVAKIVAET 104
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M YL E +L +P E VH L+ N + P V+R N++R + K+
Sbjct: 105 MDNYLFGERLLSCKFMPREKVHKDLFNQCNVPFHPPSFPAVKR--YNQKRGHLQMLKMEY 162
Query: 175 KILKRDQKRRKRIEAAGIEYECPEIVGNVMPAPKK 209
+ K+++ RK++ GI+Y P + V+P PKK
Sbjct: 163 RFKKKEKLLRKKLAKKGIDYSFPSL---VLPKPKK 194
>sp|Q91VE6|MK67I_MOUSE MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Mus
musculus GN=Mki67ip PE=2 SV=1
Length = 317
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
V+Y+G +P E + + +QFG I R R++R+K+TG SK + F+EF +VA++VA+
Sbjct: 48 VVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAET 107
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVE 174
M YL E +L +P + VH L+ N + V+R N++R + K+
Sbjct: 108 MDNYLFGERLLSCKFMPRKKVHKDLFSQRNALFHRPSFPAVKR--YNRKRGHLQMLKMEY 165
Query: 175 KILKRDQKRRKRIEAAGIEYECPEIVGNVMPAPKKI 210
+ K+++ RK++ A GI+Y P + V+P PK I
Sbjct: 166 RFKKKEKLLRKKLAAKGIDYSFPSL---VLPKPKNI 198
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114
++IG + E + + FSQ G + ++I RNK+TGQS+ +GF+EFN AE V +
Sbjct: 85 TIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQS 144
Query: 115 MHGYLL 120
+G ++
Sbjct: 145 YNGTMM 150
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 73 FFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132
F S++ ++K ++ + TG SK +GF+ F D M+G +++ + P
Sbjct: 197 FASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATP 256
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T +++G + ++E++ F+QFG + ++I K GF++F+D A+
Sbjct: 295 TTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGC------GFVQFSDRSSAQEAIQ 348
Query: 114 AMHGYLL 120
+ G ++
Sbjct: 349 KLSGAII 355
>sp|P78795|EIF3G_SCHPO Eukaryotic translation initiation factor 3 subunit G
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tif35 PE=1 SV=2
Length = 282
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 35 LEGGPGRKLTEE--KPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTG 92
L G GR+ + K + + L + + E+E++ F +FG I+R+ +A++K+TG
Sbjct: 181 LRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETG 240
Query: 93 QSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132
++K F F+ + D + A D + GY IL+ P
Sbjct: 241 RAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSKP 280
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVA 112
+ +Y+G IP E ++ A FSQ+G I + + R+K TG+SK F F+ + D +
Sbjct: 35 SAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAV 94
Query: 113 DAMHGYLLFEHILQV 127
D ++G L+ ++V
Sbjct: 95 DNLNGALVLGRTIKV 109
>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1
SV=1
Length = 300
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDP 105
++IGR+P+ E E+Q +F +FG I+++RI ++K T +SK + FI F DP
Sbjct: 108 TIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDP 158
>sp|A0JM51|CELF5_XENTR CUGBP Elav-like family member 5 OS=Xenopus tropicalis GN=celf5 PE=2
SV=1
Length = 486
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FG I ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 403 LFIYHLPQEFGDNELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPSSAQTAIQAM 462
Query: 116 HGYLLFEHILQVHL 129
+G+ + L+V L
Sbjct: 463 NGFQIGMKRLKVQL 476
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G+IP EK+++ F QFG I L + +++ TG K F+ + + A A+
Sbjct: 49 LFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTAL 108
Query: 116 H 116
H
Sbjct: 109 H 109
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G + E+E+ + F FG+I+ + R G SK F++F+ A+ A+
Sbjct: 137 LFVGMLSKQQSEEEVTSMFQAFGSIEECSVLRGPD-GSSKGCAFVKFSSHAEAQAAIQAL 195
Query: 116 HG 117
HG
Sbjct: 196 HG 197
>sp|Q9IBD1|CELF3_DANRE CUGBP Elav-like family member 3 OS=Danio rerio GN=celf3 PE=2 SV=2
Length = 452
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + EM F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 428
Query: 116 HGYLLFEHILQVHL 129
+G+ + L+V L
Sbjct: 429 NGFQIGMKRLKVQL 442
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+IG+IP EK+++ F QFG I L + ++K TG K F+ + E A +A+
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNAL 68
Query: 116 H 116
H
Sbjct: 69 H 69
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G + + +++ F FG+I+ + R G SK F+++ A+ A+
Sbjct: 96 LFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPD-GASKGCAFVKYQSNAEAQAAISAL 154
Query: 116 HG 117
HG
Sbjct: 155 HG 156
>sp|Q7TN33|CELF6_MOUSE CUGBP Elav-like family member 6 OS=Mus musculus GN=Celf6 PE=2 SV=1
Length = 460
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FGA+ ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 377 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAM 436
Query: 116 HGYLLFEHILQVHLIPPEHVH 136
+G+ + L+V L P+ +
Sbjct: 437 NGFQIGMKRLKVQLKRPKDAN 457
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G+IP G E++++ F +FG I L + +++ TG K F+ + + A A+
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 116 H 116
H
Sbjct: 108 H 108
>sp|Q9P6P7|YKCG_SCHPO Uncharacterized RNA-binding protein C644.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC644.16 PE=4 SV=1
Length = 422
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAE 109
+N + V+Y+G IP+ E+++ F Q G +K ++ + ++GQ K +GF E++DP A
Sbjct: 1 MNPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAA 60
Query: 110 VVADAMHGY 118
++ Y
Sbjct: 61 SAVRNLNNY 69
>sp|Q96J87|CELF6_HUMAN CUGBP Elav-like family member 6 OS=Homo sapiens GN=CELF6 PE=1 SV=1
Length = 481
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FGA+ ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 398 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAM 457
Query: 116 HGYLLFEHILQVHL 129
+G+ + L+V L
Sbjct: 458 NGFQIGMKRLKVQL 471
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEV 110
+ A L++G+IP G E++++ F +FG I L + +++ TG K F+ + + A
Sbjct: 43 HDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALK 102
Query: 111 VADAMH 116
A+H
Sbjct: 103 AQSALH 108
>sp|Q8N6W0|CELF5_HUMAN CUGBP Elav-like family member 5 OS=Homo sapiens GN=CELF5 PE=1 SV=1
Length = 485
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+I +P F + E+ F FG I ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 461
Query: 116 HGYLLFEHILQVHL 129
+G+ + L+V L
Sbjct: 462 NGFQIGMKRLKVQL 475
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G+IP EK+++ F QFG I L + ++ TG K F+ + + A A+
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 116 H 116
H
Sbjct: 107 H 107
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E+++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 114 AMHGYLLFEHILQVHLIPPEHVH 136
++G L ++V P
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSAS 121
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 67 EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126
E + F FGA+ +++ R+ T + K FGF+ + + A + +++GY L + +LQ
Sbjct: 290 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 349
Query: 127 VHL 129
V
Sbjct: 350 VSF 352
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+ +P +KE++ FSQ+G I RI ++ TG S+ GFI F+ AE +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 116 HG 117
+G
Sbjct: 187 NG 188
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + + H +++++ F QFG +K + + R+ TG + FGF++F DP A
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 114 AMHGYLLFEHILQV 127
M GYLL L V
Sbjct: 96 HMDGYLLLGRELTV 109
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E+++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 114 AMHGYLLFEHILQVHLIPPEHVH 136
++G L ++V P
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSAS 121
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 67 EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126
E + F FGA+ +++ R+ T + K FGF+ + + A + +++GY L + +LQ
Sbjct: 289 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 348
Query: 127 VHL 129
V
Sbjct: 349 VSF 351
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+ +P +KE++ FSQ+G I RI ++ TG S+ GFI F+ AE +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 116 HG 117
+G
Sbjct: 187 NG 188
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E+++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 114 AMHGYLLFEHILQVHLIPPEHVH 136
++G L ++V P
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSAS 121
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 67 EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126
E + F FGA+ +++ R+ T + K FGF+ + + A + +++GY L + +LQ
Sbjct: 289 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 348
Query: 127 VHL 129
V
Sbjct: 349 VSF 351
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+ +P +KE++ FSQ+G I RI ++ TG S+ GFI F+ AE +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 116 HG 117
+G
Sbjct: 187 NG 188
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 44/83 (53%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+++G +P+ F E +++ FG ++ + ++++TG SK + F + DP V ++ A+
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 116 HGYLLFEHILQVHLIPPEHVHPK 138
+G + + L V + PK
Sbjct: 437 NGIKMGDKTLTVRRAIQGAIQPK 459
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E+++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 114 AMHGYLLFEHILQVHLIPPEHVH 136
++G L ++V P
Sbjct: 127 TLNGLRLQTKTIKVSYARPSSAS 149
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 67 EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126
E + F FGA+ +++ R+ T + K FGF+ + + A + +++GY L + +LQ
Sbjct: 305 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 364
Query: 127 VHL 129
V
Sbjct: 365 VSF 367
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+ +P +KE++ FSQ+G I RI ++ TG S+ GFI F+ AE +
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 116 HG 117
+G
Sbjct: 215 NG 216
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 37 GGPGRKLTEEKPLV-------NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNK 89
GGP PL+ + T L + +P + E ++ F G I+ ++ R+K
Sbjct: 15 GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 90 KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVH 136
TGQS +GF+ ++DP A+ + ++G L ++V P
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+ +P +KEM+ FSQ+G I RI ++ TG S+ GFI F+ AE +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 116 HG 117
+G
Sbjct: 187 NG 188
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 67 EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126
E + F FGA+ +++ R+ T + K FGF+ + + A + +++GY L E +LQ
Sbjct: 297 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356
Query: 127 VHL 129
V
Sbjct: 357 VSF 359
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 37 GGPGRKLTEEKPLV-------NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNK 89
GGP PL+ + T L + +P + E ++ F G I+ ++ R+K
Sbjct: 15 GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 90 KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVH 136
TGQS +GF+ ++DP A+ + ++G L ++V P
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 67 EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126
E + F FGA+ +++ R+ T + K FGF+ + + A + +++GY L E +LQ
Sbjct: 297 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356
Query: 127 VHL 129
V
Sbjct: 357 VSF 359
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+ +P +KEM+ FSQ+G I RI ++ TG S+ GFI F+ AE +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 116 HG 117
+G
Sbjct: 187 NG 188
>sp|Q3ZC12|EIF3G_BOVIN Eukaryotic translation initiation factor 3 subunit G OS=Bos taurus
GN=EIF3G PE=2 SV=1
Length = 320
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 21 PVPSDKKGAADFLP--LEGGPGRKLTEEKP--LVNKATVLYIGRIPHGFYEKEMQAFFSQ 76
PV + + ++P L G R+ +P + + + + E ++Q F
Sbjct: 202 PVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 261
Query: 77 FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132
FG+I R+ +A++K TGQSK F FI F+ E A + G+ IL V P
Sbjct: 262 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 317
>sp|O75821|EIF3G_HUMAN Eukaryotic translation initiation factor 3 subunit G OS=Homo
sapiens GN=EIF3G PE=1 SV=2
Length = 320
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 21 PVPSDKKGAADFLP--LEGGPGRKLTEEKP--LVNKATVLYIGRIPHGFYEKEMQAFFSQ 76
PV + + ++P L G R+ +P + + + + E ++Q F
Sbjct: 202 PVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 261
Query: 77 FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132
FG+I R+ +A++K TGQSK F FI F+ E A + G+ IL V P
Sbjct: 262 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 317
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 114 AMHGYLLFEHILQVHLIPPEHVH 136
++G L ++V P
Sbjct: 111 TLNGLRLQTKTIKVSYARPSSAS 133
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 67 EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126
E + F FGA+ +++ R+ T + K FGF+ + + A + +++GY L + +LQ
Sbjct: 315 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 374
Query: 127 VHL 129
V
Sbjct: 375 VSF 377
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+ +P +KE++ FSQ+G I RI ++ TG S+ GFI F+ AE +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 116 HG 117
+G
Sbjct: 199 NG 200
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 114 AMHGYLLFEHILQVHLIPPEHVH 136
++G L ++V P
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSAS 121
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 67 EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126
E + F FGA+ +++ R+ T + K FGF+ + + A + +++GY L + +LQ
Sbjct: 303 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 362
Query: 127 VHL 129
V
Sbjct: 363 VSF 365
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+ +P +KE++ FSQ+G I RI ++ TG S+ GFI F+ AE +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 116 HG 117
+G
Sbjct: 187 NG 188
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
T L + +P ++E ++ F G I+ ++ R+K TGQS +GF+ + DP+ AE +
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 114 AMHGYLLFEHILQVHLIPPEHVH 136
++G L ++V P
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSAS 128
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 67 EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126
E + F FGA+ +++ R+ T + K FGF+ + + A + +++GY L + +LQ
Sbjct: 310 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 369
Query: 127 VHL 129
V
Sbjct: 370 VSF 372
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+ +P +KE++ FSQ+G I RI ++ TG S+ GFI F+ AE +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 116 HG 117
+G
Sbjct: 194 NG 195
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 44/79 (55%)
Query: 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVA 112
+ +++G IP+ E ++ A F+Q+G + + + R+K TG+SK F F+ + D +
Sbjct: 35 SAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAV 94
Query: 113 DAMHGYLLFEHILQVHLIP 131
D ++G + I++V +
Sbjct: 95 DNLNGAKVLGRIVRVDHVS 113
>sp|Q9Z1D1|EIF3G_MOUSE Eukaryotic translation initiation factor 3 subunit G OS=Mus
musculus GN=Eif3g PE=1 SV=2
Length = 320
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 21 PVPSDKKGAADFLP--LEGGPGRKLTEEKP--LVNKATVLYIGRIPHGFYEKEMQAFFSQ 76
PV + + ++P L G R+ +P + + + + E ++Q F
Sbjct: 202 PVQAAQSKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 261
Query: 77 FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132
FG+I R+ +A++K TGQSK F FI F+ E A + G+ IL V P
Sbjct: 262 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 317
>sp|Q4WAQ9|PPIL4_ASPFU Peptidyl-prolyl cis-trans isomerase-like 4 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=cyp6 PE=3 SV=1
Length = 459
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113
VL++ ++ ++++Q FS+FG I + R+K+TG S + FIEF + + E
Sbjct: 248 NVLFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYF 307
Query: 114 AMHGYLLFEHILQVHLIPPEHVHPKLWR 141
M G L+ +H + V + WR
Sbjct: 308 KMQGVLIDDHRIHVDFSQSVSKLSESWR 335
>sp|Q5RK09|EIF3G_RAT Eukaryotic translation initiation factor 3 subunit G OS=Rattus
norvegicus GN=Eif3g PE=2 SV=1
Length = 320
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 21 PVPSDKKGAADFLP--LEGGPGRKLTEEKP--LVNKATVLYIGRIPHGFYEKEMQAFFSQ 76
PV + + ++P L G R+ +P + + + + E ++Q F
Sbjct: 202 PVQAAQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 261
Query: 77 FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132
FG+I R+ +A++K TGQSK F FI F+ E A + G+ IL V P
Sbjct: 262 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 317
>sp|Q08E07|CELF3_BOVIN CUGBP Elav-like family member 3 OS=Bos taurus GN=CELF3 PE=2 SV=1
Length = 461
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 437
Query: 116 HGYLLFEHILQVHL 129
+G+ + L+V L
Sbjct: 438 NGFQIGMKRLKVQL 451
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G+IP EK+++ F QFG I L + ++K TG K F+ + + A A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 116 H 116
H
Sbjct: 69 H 69
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 28/144 (19%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G + ++ ++++FSQ+G + I ++K T QS+ FGF++F DP V +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 116 HGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEK 175
H L I P+ P RG P ERT K+ +K
Sbjct: 72 ------PHTLDGRNIDPKPCTP---RGMQP-----------------ERT--RPKEGWQK 103
Query: 176 ILKRDQKRRKRIEAAGIEYECPEI 199
+ D + +I GI + C E
Sbjct: 104 GPRSDSSKSNKIFVGGIPHNCGET 127
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEV 110
+K+ +++G IPH E E++ +F +FG + + + + + + + FGFI F D + +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 111 VADAMH 116
+ MH
Sbjct: 170 AVN-MH 174
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 28/144 (19%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G + ++ ++++FSQ+G + I ++K T QS+ FGF++F DP V +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 116 HGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEK 175
H L I P+ P RG P ERT K+ +K
Sbjct: 72 ------PHTLDGRNIDPKPCTP---RGMQP-----------------ERT--RPKEGWQK 103
Query: 176 ILKRDQKRRKRIEAAGIEYECPEI 199
+ D + +I GI + C E
Sbjct: 104 GPRSDNSKSNKIFVGGIPHNCGET 127
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEV 110
+K+ +++G IPH E E++ +F +FG + + + + + + + FGFI F D + +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 111 VADAMH 116
+ MH
Sbjct: 170 AVN-MH 174
>sp|Q5SZQ8|CELF3_HUMAN CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1
Length = 465
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 116 HGYLLFEHILQVHL 129
+G+ + L+V L
Sbjct: 442 NGFQIGMKRLKVQL 455
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G+IP EK+++ F QFG I L + ++K TG K F+ + + A A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 116 H 116
H
Sbjct: 69 H 69
>sp|Q8CIN6|CELF3_MOUSE CUGBP Elav-like family member 3 OS=Mus musculus GN=Celf3 PE=2 SV=1
Length = 465
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 116 HGYLLFEHILQVHL 129
+G+ + L+V L
Sbjct: 442 NGFQIGMKRLKVQL 455
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G+IP EK+++ F QFG I L + ++K TG K F+ + + A A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 116 H 116
H
Sbjct: 69 H 69
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 8/188 (4%)
Query: 22 VPSDKKGAADFLPLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIK 81
V D++ DF G G TEE ++ L++G +P+ + + F Q G ++
Sbjct: 67 VLDDQEQGGDFPSFVGEAGE--TEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVE 124
Query: 82 RLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHP-KLW 140
+ N++T +S+ FGF+ + E A+ + Y L +L V+ P P +
Sbjct: 125 IAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAP 184
Query: 141 RGFNPRYKP-VDRVQVERKLQNKERTLEEHKKLVEK--ILKRDQKRRKRIEAAGI--EYE 195
R F P Y+ V + + E+ EH K+V + R+ R + + E E
Sbjct: 185 RTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAE 244
Query: 196 CPEIVGNV 203
E + N+
Sbjct: 245 MSEAIANL 252
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 27/144 (18%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L++G + ++ ++++FSQ+G + I ++K T QS+ FGF++F DP V +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 116 HGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEK 175
H L I P+ P RG P +R + Q KE E
Sbjct: 72 ------PHTLDGRNIDPKPCTP---RGMQP-----ERSRPREGWQQKEPRTEN------- 110
Query: 176 ILKRDQKRRKRIEAAGIEYECPEI 199
R +I GI + C E
Sbjct: 111 ------SRSNKIFVGGIPHNCGET 128
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEV 110
+++ +++G IPH E E++ +F++FG + + + + + + + FGFI F D + +
Sbjct: 111 SRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 170
Query: 111 VADAMH 116
+ MH
Sbjct: 171 AVN-MH 175
>sp|Q6DRC4|EIF3G_DANRE Eukaryotic translation initiation factor 3 subunit G OS=Danio rerio
GN=eif3g PE=1 SV=1
Length = 293
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAE 109
+ + + + E ++Q F FG+I R+ +A++K TGQSK F FI F+ E A
Sbjct: 208 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFAFISFHRREDAA 267
Query: 110 VVADAMHGYLLFEHILQVHLIPPEH 134
+ G+ IL V P +
Sbjct: 268 RAIAGVSGFGYDHLILNVEWAKPSN 292
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
+++G +P+ F E +++ FG ++ I ++K+TG SK + F + D V ++ A+
Sbjct: 394 IFVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETGNSKGYAFCLYKDGTVTDIACAAL 453
Query: 116 HGYLLFEHILQV 127
+G L + L V
Sbjct: 454 NGIQLGDRTLTV 465
>sp|Q91579|CEL3A_XENLA CUGBP Elav-like family member 3-A OS=Xenopus laevis GN=tnrc4-a PE=2
SV=2
Length = 462
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
++I +P F + E+ F FG + ++ ++ T QSK FGF+ F++P A+ AM
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAM 438
Query: 116 HGYLLFEHILQVHL 129
+G+ + L+V L
Sbjct: 439 NGFQIGMKRLKVQL 452
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
L+IG+IP EK+++ F QFG I L + ++K TG K F+ + E A A+
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 116 H 116
H
Sbjct: 69 H 69
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + E ++ F FG I+ +++ + +TG+SK +GFI F+D E A+ + +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 116 HGYLL 120
+G+ L
Sbjct: 312 NGFEL 316
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 68 KEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFND 104
++++ FFS G ++ +R+ ++ + +SK ++EF D
Sbjct: 167 RDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + E ++ F FG I+ +++ + +TG+SK +GFI F+D E A+ + +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 116 HGYLL 120
+G+ L
Sbjct: 312 NGFEL 316
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 68 KEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFND 104
++++ FFS G ++ +R+ ++ + +SK ++EF D
Sbjct: 167 RDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115
LY+G + E ++ F FG I+ +++ + +TG+SK +GFI F+D E A+ + +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 116 HGYLL 120
+G+ L
Sbjct: 312 NGFEL 316
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 68 KEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFND 104
++++ FFS G ++ +R+ ++ + +SK ++EF D
Sbjct: 167 RDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
>sp|O94290|IST3_SCHPO U2 snRNP component ist3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cwf29 PE=1 SV=1
Length = 217
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEV 110
+ + +YIG + E ++ FS+FG + + R+K+TG+SK F F+++ D +
Sbjct: 28 SDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVL 87
Query: 111 VADAMHGYLLFEHILQV 127
D M L + +++V
Sbjct: 88 AVDNMTNVKLLDRLVRV 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,343,277
Number of Sequences: 539616
Number of extensions: 3656414
Number of successful extensions: 14573
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 253
Number of HSP's that attempted gapping in prelim test: 13385
Number of HSP's gapped (non-prelim): 1338
length of query: 215
length of database: 191,569,459
effective HSP length: 113
effective length of query: 102
effective length of database: 130,592,851
effective search space: 13320470802
effective search space used: 13320470802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)