Query 028027
Match_columns 215
No_of_seqs 316 out of 1887
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:07:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4208 Nucleolar RNA-binding 99.9 3.1E-21 6.8E-26 150.0 10.2 167 45-211 41-209 (214)
2 PLN03134 glycine-rich RNA-bind 99.8 2E-19 4.3E-24 136.7 14.8 94 48-141 29-122 (144)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.2E-17 2.6E-22 144.1 11.9 82 53-134 269-350 (352)
4 KOG0122 Translation initiation 99.7 3.3E-17 7.2E-22 130.5 10.7 85 49-133 185-269 (270)
5 TIGR01659 sex-lethal sex-letha 99.7 4.6E-17 9.9E-22 140.0 12.4 86 48-133 102-187 (346)
6 PF00076 RRM_1: RNA recognitio 99.7 7E-17 1.5E-21 106.9 9.6 70 56-126 1-70 (70)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5.7E-17 1.2E-21 139.8 11.4 83 52-134 2-84 (352)
8 TIGR01645 half-pint poly-U bin 99.7 4.5E-16 9.7E-21 141.3 12.0 83 52-134 203-285 (612)
9 TIGR01659 sex-lethal sex-letha 99.7 7.6E-16 1.6E-20 132.5 12.2 105 29-133 168-275 (346)
10 KOG0121 Nuclear cap-binding pr 99.7 3.2E-16 6.9E-21 113.5 7.3 86 50-135 33-118 (153)
11 KOG0149 Predicted RNA-binding 99.7 2.2E-16 4.7E-21 125.3 7.0 80 51-131 10-89 (247)
12 KOG0125 Ataxin 2-binding prote 99.6 9.3E-16 2E-20 126.8 10.2 102 30-133 72-174 (376)
13 PF14259 RRM_6: RNA recognitio 99.6 2E-15 4.4E-20 100.4 10.0 70 56-126 1-70 (70)
14 KOG0126 Predicted RNA-binding 99.6 4.2E-17 9.2E-22 124.7 1.5 83 50-132 32-114 (219)
15 PLN03120 nucleic acid binding 99.6 4.6E-15 1E-19 121.1 11.1 78 53-134 4-81 (260)
16 KOG4207 Predicted splicing fac 99.6 8.8E-16 1.9E-20 119.7 6.5 83 50-132 10-92 (256)
17 KOG0111 Cyclophilin-type pepti 99.6 8E-16 1.7E-20 121.0 5.6 90 50-139 7-96 (298)
18 TIGR01645 half-pint poly-U bin 99.6 3.7E-15 8E-20 135.4 10.4 81 51-131 105-185 (612)
19 TIGR01648 hnRNP-R-Q heterogene 99.6 6.4E-15 1.4E-19 133.4 11.5 98 31-131 38-136 (578)
20 KOG0113 U1 small nuclear ribon 99.6 6.4E-15 1.4E-19 120.5 9.9 84 51-134 99-182 (335)
21 PLN03213 repressor of silencin 99.6 1E-14 2.3E-19 126.4 10.0 79 50-132 7-87 (759)
22 TIGR01628 PABP-1234 polyadenyl 99.6 1.6E-14 3.5E-19 132.1 11.4 79 55-133 2-80 (562)
23 KOG0130 RNA-binding protein RB 99.6 6E-15 1.3E-19 107.9 6.7 83 51-133 70-152 (170)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2.9E-14 6.4E-19 128.7 12.5 83 51-133 293-375 (509)
25 KOG0117 Heterogeneous nuclear 99.6 2.2E-14 4.8E-19 122.9 10.8 88 45-132 75-163 (506)
26 KOG0107 Alternative splicing f 99.6 1.2E-14 2.6E-19 110.7 8.2 79 52-135 9-87 (195)
27 TIGR01622 SF-CC1 splicing fact 99.6 2.7E-14 5.8E-19 127.4 11.2 80 53-132 186-265 (457)
28 PLN03121 nucleic acid binding 99.6 5.7E-14 1.2E-18 113.1 11.8 80 51-134 3-82 (243)
29 smart00362 RRM_2 RNA recogniti 99.6 4.7E-14 1E-18 92.6 9.3 72 55-128 1-72 (72)
30 KOG0148 Apoptosis-promoting RN 99.5 1.6E-14 3.5E-19 116.8 8.3 81 54-134 63-143 (321)
31 KOG0144 RNA-binding protein CU 99.5 3.4E-14 7.5E-19 121.3 10.2 120 45-176 26-148 (510)
32 KOG0131 Splicing factor 3b, su 99.5 1.8E-14 3.8E-19 110.4 7.4 81 51-131 7-87 (203)
33 TIGR01628 PABP-1234 polyadenyl 99.5 5.1E-14 1.1E-18 128.8 11.2 82 51-133 283-364 (562)
34 KOG0148 Apoptosis-promoting RN 99.5 5.7E-14 1.2E-18 113.6 9.8 79 49-133 160-238 (321)
35 smart00360 RRM RNA recognition 99.5 6.7E-14 1.5E-18 91.5 8.5 71 58-128 1-71 (71)
36 TIGR01622 SF-CC1 splicing fact 99.5 8.1E-14 1.8E-18 124.3 11.2 82 50-132 86-167 (457)
37 KOG0131 Splicing factor 3b, su 99.5 1.1E-14 2.5E-19 111.5 4.7 103 33-135 74-179 (203)
38 KOG0145 RNA-binding protein EL 99.5 6.5E-14 1.4E-18 112.9 8.8 98 51-151 39-136 (360)
39 COG0724 RNA-binding proteins ( 99.5 1.2E-13 2.6E-18 113.0 10.2 80 53-132 115-194 (306)
40 KOG0114 Predicted RNA-binding 99.5 1.9E-13 4.1E-18 95.7 9.6 80 50-132 15-94 (124)
41 KOG0144 RNA-binding protein CU 99.5 2.4E-14 5.2E-19 122.2 5.6 97 39-136 108-209 (510)
42 KOG0108 mRNA cleavage and poly 99.5 1E-13 2.2E-18 121.5 8.2 82 54-135 19-100 (435)
43 cd00590 RRM RRM (RNA recogniti 99.5 6.7E-13 1.4E-17 87.5 9.9 74 55-129 1-74 (74)
44 KOG0145 RNA-binding protein EL 99.4 9.2E-13 2E-17 106.3 10.2 82 51-132 276-357 (360)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.2E-12 2.5E-17 117.9 11.8 79 51-134 273-352 (481)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.2E-12 2.7E-17 117.7 10.7 76 52-133 1-78 (481)
47 KOG0124 Polypyrimidine tract-b 99.4 1.9E-13 4.2E-18 114.7 4.8 76 53-128 113-188 (544)
48 TIGR01648 hnRNP-R-Q heterogene 99.4 2E-12 4.4E-17 117.3 10.9 75 52-134 232-308 (578)
49 KOG0127 Nucleolar protein fibr 99.4 1.5E-12 3.3E-17 114.2 9.5 82 52-134 116-197 (678)
50 KOG0123 Polyadenylate-binding 99.4 1.1E-12 2.5E-17 113.7 8.4 100 29-135 56-155 (369)
51 KOG0105 Alternative splicing f 99.4 1.2E-12 2.5E-17 100.8 6.7 80 51-133 4-83 (241)
52 smart00361 RRM_1 RNA recogniti 99.4 3.4E-12 7.4E-17 85.1 7.9 62 67-128 2-70 (70)
53 KOG0146 RNA-binding protein ET 99.4 8.7E-13 1.9E-17 106.8 5.8 87 49-135 281-367 (371)
54 KOG0127 Nucleolar protein fibr 99.4 7E-12 1.5E-16 110.0 11.3 85 50-134 289-379 (678)
55 PF13893 RRM_5: RNA recognitio 99.3 8.9E-12 1.9E-16 79.3 8.7 56 70-130 1-56 (56)
56 KOG0147 Transcriptional coacti 99.3 1.5E-12 3.3E-17 114.2 6.6 79 55-133 280-358 (549)
57 KOG0415 Predicted peptidyl pro 99.3 2.2E-12 4.7E-17 108.0 6.5 83 50-132 236-318 (479)
58 KOG0117 Heterogeneous nuclear 99.3 4.9E-12 1.1E-16 108.6 7.8 76 52-135 258-333 (506)
59 KOG0146 RNA-binding protein ET 99.3 4.8E-12 1E-16 102.5 7.0 100 37-137 2-105 (371)
60 KOG0109 RNA-binding protein LA 99.3 8.9E-12 1.9E-16 102.0 7.5 73 54-134 3-75 (346)
61 KOG0109 RNA-binding protein LA 99.2 1.3E-11 2.8E-16 101.0 5.2 97 28-133 54-150 (346)
62 KOG0124 Polypyrimidine tract-b 99.2 3.7E-11 8.1E-16 101.1 7.7 105 28-132 173-289 (544)
63 KOG4206 Spliceosomal protein s 99.2 6.6E-11 1.4E-15 93.9 8.1 83 51-136 7-93 (221)
64 KOG4205 RNA-binding protein mu 99.2 4.9E-11 1.1E-15 100.7 7.5 98 39-137 79-180 (311)
65 TIGR01642 U2AF_lg U2 snRNP aux 99.1 1.9E-10 4.1E-15 104.0 9.6 74 50-130 172-257 (509)
66 KOG4205 RNA-binding protein mu 99.1 5.4E-11 1.2E-15 100.4 5.3 85 52-137 5-89 (311)
67 KOG0132 RNA polymerase II C-te 99.1 1.5E-10 3.3E-15 105.2 8.0 99 51-155 419-519 (894)
68 KOG4212 RNA-binding protein hn 99.1 2.6E-10 5.6E-15 98.0 8.3 81 51-132 42-123 (608)
69 KOG4661 Hsp27-ERE-TATA-binding 99.1 5E-10 1.1E-14 99.1 9.7 84 50-133 402-485 (940)
70 KOG0153 Predicted RNA-binding 99.1 4.5E-10 9.7E-15 94.0 8.4 78 49-132 224-302 (377)
71 KOG0123 Polyadenylate-binding 99.1 4.2E-10 9.1E-15 97.7 8.3 75 54-134 2-76 (369)
72 KOG0533 RRM motif-containing p 99.0 1.7E-09 3.7E-14 88.1 9.2 84 50-134 80-163 (243)
73 KOG1548 Transcription elongati 99.0 4.4E-09 9.6E-14 88.1 11.2 82 50-132 131-220 (382)
74 KOG0110 RNA-binding protein (R 99.0 4.5E-10 9.8E-15 101.4 5.7 84 51-134 611-694 (725)
75 KOG0110 RNA-binding protein (R 99.0 2.8E-09 6.1E-14 96.4 9.8 78 53-131 515-596 (725)
76 KOG0151 Predicted splicing reg 98.9 5.8E-09 1.3E-13 94.3 10.2 105 28-132 149-256 (877)
77 KOG0226 RNA-binding proteins [ 98.9 4.4E-09 9.5E-14 84.8 7.7 79 50-128 187-265 (290)
78 KOG4212 RNA-binding protein hn 98.9 3.8E-09 8.3E-14 91.0 6.8 75 51-130 534-608 (608)
79 KOG4209 Splicing factor RNPS1, 98.9 7.6E-09 1.6E-13 84.3 7.4 85 48-133 96-180 (231)
80 KOG1457 RNA binding protein (c 98.8 5.3E-08 1.1E-12 77.4 10.3 86 51-136 32-121 (284)
81 KOG0116 RasGAP SH3 binding pro 98.8 3.4E-08 7.4E-13 86.5 9.2 83 50-133 285-367 (419)
82 PF04059 RRM_2: RNA recognitio 98.6 3.2E-07 7E-12 64.7 9.0 78 54-131 2-85 (97)
83 KOG0106 Alternative splicing f 98.6 4.9E-08 1.1E-12 78.1 4.7 72 54-133 2-73 (216)
84 KOG4454 RNA binding protein (R 98.6 2E-08 4.2E-13 79.6 2.0 80 51-132 7-86 (267)
85 KOG4660 Protein Mei2, essentia 98.5 7.8E-08 1.7E-12 85.1 4.0 72 50-126 72-143 (549)
86 KOG4211 Splicing factor hnRNP- 98.5 5.7E-07 1.2E-11 78.7 8.9 79 51-133 8-86 (510)
87 KOG0120 Splicing factor U2AF, 98.4 2E-07 4.4E-12 82.9 4.3 90 51-140 287-376 (500)
88 KOG0147 Transcriptional coacti 98.4 1.8E-07 3.9E-12 82.8 2.2 85 48-133 174-258 (549)
89 KOG1190 Polypyrimidine tract-b 98.3 6E-06 1.3E-10 71.0 10.3 78 53-135 297-375 (492)
90 KOG4211 Splicing factor hnRNP- 98.2 3.5E-06 7.6E-11 73.9 7.5 78 51-130 101-179 (510)
91 KOG1995 Conserved Zn-finger pr 98.2 1.1E-06 2.5E-11 74.2 3.7 85 50-134 63-155 (351)
92 KOG3152 TBP-binding protein, a 98.1 1.4E-06 3.1E-11 70.6 2.9 73 52-124 73-157 (278)
93 PF11608 Limkain-b1: Limkain b 98.1 9.2E-06 2E-10 55.2 6.3 68 54-131 3-75 (90)
94 PF08777 RRM_3: RNA binding mo 98.1 9.5E-06 2.1E-10 58.2 6.0 70 54-129 2-76 (105)
95 KOG4210 Nuclear localization s 98.1 5.2E-06 1.1E-10 69.9 4.8 85 51-136 182-267 (285)
96 COG5175 MOT2 Transcriptional r 98.0 1.8E-05 3.9E-10 66.7 6.5 79 54-132 115-202 (480)
97 KOG4849 mRNA cleavage factor I 98.0 5.7E-06 1.2E-10 69.9 3.3 75 54-128 81-157 (498)
98 KOG4206 Spliceosomal protein s 97.9 6.1E-05 1.3E-09 60.2 8.0 79 48-131 141-220 (221)
99 KOG1190 Polypyrimidine tract-b 97.9 4.1E-05 8.8E-10 66.0 7.3 78 51-132 412-490 (492)
100 KOG1457 RNA binding protein (c 97.8 1.8E-05 3.9E-10 63.2 4.0 64 54-121 211-274 (284)
101 KOG0106 Alternative splicing f 97.8 2.1E-05 4.6E-10 63.1 3.4 75 48-130 94-168 (216)
102 KOG1456 Heterogeneous nuclear 97.8 0.00084 1.8E-08 57.5 12.8 82 49-135 283-365 (494)
103 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.0001 2.2E-09 46.1 5.0 52 54-112 2-53 (53)
104 KOG2314 Translation initiation 97.6 0.00015 3.2E-09 65.0 6.8 80 51-131 56-142 (698)
105 KOG4307 RNA binding protein RB 97.5 0.0004 8.7E-09 63.7 8.2 76 53-129 867-943 (944)
106 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00067 1.5E-08 48.1 7.4 79 51-131 4-90 (100)
107 KOG0120 Splicing factor U2AF, 97.5 0.00037 8E-09 62.5 7.2 67 70-136 426-495 (500)
108 KOG0129 Predicted RNA-binding 97.5 0.00045 9.8E-09 61.3 7.5 66 49-114 366-432 (520)
109 KOG1365 RNA-binding protein Fu 97.4 0.00031 6.8E-09 60.3 6.1 83 48-131 275-360 (508)
110 PF08952 DUF1866: Domain of un 97.4 0.00075 1.6E-08 50.9 7.5 74 51-133 25-107 (146)
111 KOG1548 Transcription elongati 97.3 0.0013 2.8E-08 55.9 7.9 79 51-133 263-352 (382)
112 KOG0129 Predicted RNA-binding 97.3 0.0016 3.5E-08 57.9 8.6 77 50-130 256-338 (520)
113 KOG1365 RNA-binding protein Fu 97.2 0.00072 1.6E-08 58.1 5.4 72 52-125 160-235 (508)
114 KOG1855 Predicted RNA-binding 97.1 0.00059 1.3E-08 59.3 4.3 71 48-118 226-309 (484)
115 KOG0105 Alternative splicing f 97.0 0.0025 5.5E-08 49.8 6.8 73 50-129 112-186 (241)
116 KOG0128 RNA-binding protein SA 97.0 0.00033 7.2E-09 65.4 2.2 85 53-138 736-820 (881)
117 PF08675 RNA_bind: RNA binding 97.0 0.0061 1.3E-07 41.5 7.5 55 53-116 9-63 (87)
118 KOG0112 Large RNA-binding prot 97.0 0.0011 2.3E-08 62.5 5.0 78 50-133 452-531 (975)
119 KOG1456 Heterogeneous nuclear 96.8 0.013 2.9E-07 50.4 9.7 79 52-135 119-201 (494)
120 PF10309 DUF2414: Protein of u 96.7 0.0085 1.8E-07 38.6 6.3 55 53-115 5-62 (62)
121 KOG2202 U2 snRNP splicing fact 96.7 0.00076 1.6E-08 55.0 1.6 63 69-132 84-147 (260)
122 KOG0115 RNA-binding protein p5 96.6 0.0017 3.7E-08 53.0 3.1 82 28-116 12-93 (275)
123 KOG2193 IGF-II mRNA-binding pr 96.6 0.0014 3.1E-08 57.0 2.8 77 54-136 2-79 (584)
124 KOG2068 MOT2 transcription fac 96.6 0.0008 1.7E-08 56.9 1.0 79 54-133 78-163 (327)
125 KOG4307 RNA binding protein RB 96.5 0.0055 1.2E-07 56.5 5.6 80 50-130 431-511 (944)
126 KOG4676 Splicing factor, argin 96.5 0.0055 1.2E-07 52.9 5.2 77 53-130 7-86 (479)
127 KOG0128 RNA-binding protein SA 96.4 0.00019 4.2E-09 66.9 -4.1 68 54-121 668-735 (881)
128 KOG1996 mRNA splicing factor [ 96.3 0.015 3.4E-07 48.5 6.9 64 68-131 301-365 (378)
129 KOG2416 Acinus (induces apopto 96.2 0.006 1.3E-07 55.3 4.4 77 50-132 441-521 (718)
130 PF03467 Smg4_UPF3: Smg-4/UPF3 96.2 0.011 2.3E-07 46.4 5.1 82 51-132 5-97 (176)
131 KOG0112 Large RNA-binding prot 96.1 0.0018 3.9E-08 61.0 0.5 82 49-131 368-449 (975)
132 PF07576 BRAP2: BRCA1-associat 96.0 0.12 2.6E-06 37.3 9.6 68 53-122 13-81 (110)
133 PF15023 DUF4523: Protein of u 96.0 0.032 7E-07 41.9 6.7 74 50-131 83-160 (166)
134 KOG4285 Mitotic phosphoprotein 95.1 0.14 3E-06 43.1 7.9 73 53-133 197-270 (350)
135 KOG2253 U1 snRNP complex, subu 95.0 0.021 4.6E-07 52.4 3.3 73 48-129 35-107 (668)
136 PF04847 Calcipressin: Calcipr 94.4 0.14 3.1E-06 40.4 6.3 62 66-133 8-71 (184)
137 PF03880 DbpA: DbpA RNA bindin 94.4 0.3 6.6E-06 32.4 7.0 67 55-130 2-74 (74)
138 KOG2135 Proteins containing th 94.1 0.032 7E-07 49.4 2.3 76 52-134 371-447 (526)
139 KOG4210 Nuclear localization s 91.9 0.13 2.9E-06 43.4 2.8 82 51-132 86-167 (285)
140 KOG0804 Cytoplasmic Zn-finger 91.9 0.7 1.5E-05 41.0 7.1 68 53-122 74-142 (493)
141 KOG2591 c-Mpl binding protein, 91.3 0.43 9.3E-06 43.4 5.3 72 51-129 173-248 (684)
142 KOG4454 RNA binding protein (R 91.0 0.055 1.2E-06 43.5 -0.4 66 54-120 81-150 (267)
143 KOG4660 Protein Mei2, essentia 90.7 0.51 1.1E-05 42.8 5.2 66 54-119 389-455 (549)
144 KOG4574 RNA-binding protein (c 89.7 0.22 4.8E-06 47.3 2.2 71 59-135 304-376 (1007)
145 KOG2891 Surface glycoprotein [ 89.2 0.38 8.2E-06 40.2 3.0 70 49-118 145-245 (445)
146 KOG2318 Uncharacterized conser 88.7 1.9 4E-05 39.6 7.2 82 50-131 171-306 (650)
147 KOG2193 IGF-II mRNA-binding pr 85.0 0.028 6E-07 49.2 -6.0 79 50-132 77-156 (584)
148 PF11767 SET_assoc: Histone ly 83.8 9.2 0.0002 24.9 6.8 55 64-127 11-65 (66)
149 KOG4483 Uncharacterized conser 76.5 6.1 0.00013 34.8 5.2 56 51-113 389-445 (528)
150 KOG4019 Calcineurin-mediated s 69.2 4 8.8E-05 32.0 2.3 75 53-133 10-90 (193)
151 PF03468 XS: XS domain; Inter 67.5 6.7 0.00015 28.5 3.1 57 54-113 9-75 (116)
152 KOG4676 Splicing factor, argin 67.1 1.2 2.6E-05 38.9 -1.1 63 54-121 152-214 (479)
153 KOG4410 5-formyltetrahydrofola 65.3 25 0.00053 29.8 6.2 47 53-105 330-377 (396)
154 smart00596 PRE_C2HC PRE_C2HC d 63.6 10 0.00023 24.8 3.0 60 68-130 2-62 (69)
155 KOG2295 C2H2 Zn-finger protein 61.6 1.3 2.8E-05 40.4 -2.0 75 51-125 229-303 (648)
156 PF07530 PRE_C2HC: Associated 61.1 20 0.00044 23.3 4.2 61 68-131 2-63 (68)
157 COG0724 RNA-binding proteins ( 59.9 12 0.00025 29.7 3.6 62 50-111 222-283 (306)
158 PF15513 DUF4651: Domain of un 59.2 23 0.00049 22.7 3.9 18 68-85 9-26 (62)
159 PF10567 Nab6_mRNP_bdg: RNA-re 57.4 23 0.00049 30.0 4.8 84 48-131 10-106 (309)
160 KOG1295 Nonsense-mediated deca 49.3 27 0.00058 30.6 4.1 68 53-120 7-77 (376)
161 KOG4365 Uncharacterized conser 47.6 2.8 6.2E-05 37.2 -2.0 78 54-132 4-81 (572)
162 PRK14548 50S ribosomal protein 47.1 77 0.0017 21.6 5.3 56 56-114 23-80 (84)
163 TIGR03636 L23_arch archaeal ri 46.2 87 0.0019 20.9 5.4 56 56-114 16-73 (77)
164 KOG4008 rRNA processing protei 43.3 19 0.00042 29.5 2.2 34 50-83 37-70 (261)
165 PF09707 Cas_Cas2CT1978: CRISP 41.3 58 0.0013 22.3 4.0 47 54-103 26-72 (86)
166 PF07292 NID: Nmi/IFP 35 domai 39.3 21 0.00046 24.6 1.7 25 50-74 49-73 (88)
167 PF02714 DUF221: Domain of unk 39.1 43 0.00093 28.4 3.9 33 98-132 1-33 (325)
168 COG5638 Uncharacterized conser 35.2 1.4E+02 0.0031 26.7 6.4 34 97-130 260-295 (622)
169 PRK11558 putative ssRNA endonu 34.4 72 0.0016 22.4 3.7 49 54-105 28-76 (97)
170 COG5193 LHP1 La protein, small 31.9 23 0.00051 31.3 1.1 60 53-112 174-243 (438)
171 PF15082 DUF4549: Domain of un 30.9 1.3E+02 0.0029 22.5 4.7 47 166-212 9-55 (144)
172 COG0030 KsgA Dimethyladenosine 28.6 71 0.0015 26.7 3.4 36 53-88 95-130 (259)
173 KOG3424 40S ribosomal protein 28.4 1.7E+02 0.0037 21.4 4.8 45 64-109 34-83 (132)
174 PRK11230 glycolate oxidase sub 28.4 2.7E+02 0.0059 25.5 7.4 63 53-116 189-255 (499)
175 KOG0156 Cytochrome P450 CYP2 s 26.2 1.1E+02 0.0025 27.9 4.6 59 57-125 36-97 (489)
176 KOG4213 RNA-binding protein La 25.5 48 0.001 26.1 1.7 57 52-114 110-169 (205)
177 PF05189 RTC_insert: RNA 3'-te 24.6 2.4E+02 0.0053 19.5 5.2 49 55-103 12-65 (103)
178 KOG3702 Nuclear polyadenylated 23.5 87 0.0019 29.6 3.2 72 54-126 512-583 (681)
179 PF11823 DUF3343: Protein of u 22.8 1.3E+02 0.0027 19.5 3.2 25 96-120 2-26 (73)
180 PF00398 RrnaAD: Ribosomal RNA 22.2 82 0.0018 25.9 2.7 29 52-80 96-126 (262)
181 PRK01178 rps24e 30S ribosomal 20.2 3.2E+02 0.007 19.2 5.6 46 64-110 30-80 (99)
No 1
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.85 E-value=3.1e-21 Score=150.01 Aligned_cols=167 Identities=41% Similarity=0.704 Sum_probs=154.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHhccC-CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 028027 45 EEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQF-GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 123 (215)
Q Consensus 45 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~-G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~ 123 (215)
+..+.......+||..+|..+.+..|..+|.+| |.|..+++.+++.||.++|||||+|++.+.|..|.+.||++.|.|+
T Consensus 41 ~~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 41 REKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 445667788899999999999999999999998 7889999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCC-CCCCCCcCCCCCCCCCCChHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCccccC
Q 028027 124 ILQVHLIPPE-HVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIVGN 202 (215)
Q Consensus 124 ~l~V~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~~~kl~~~gi~~~~~~~~~~ 202 (215)
.|.|.+..|. ..+...|.+++..+.+.....+.+...++..+.+++.....+.........+.+.+.||.+.++..++.
T Consensus 121 lL~c~vmppe~~v~~~~~k~~~~~~~~~~~~~~k~~~~~~~~t~~e~~k~~~k~~~~~~~~~~~~~~~~i~~~~~e~~~~ 200 (214)
T KOG4208|consen 121 LLECHVMPPEQKVEKNLKKVSGTPFKPGKTVPIKRLQDNKDLTHEERRKKLVKENKKDAKDDKAVTEAGIEPEVSEPVTK 200 (214)
T ss_pred eeeeEEeCchhhhhhhhhhhcCCcCCCCCcccccccCcccccchHHhhHHHHhhhhhhhcccchhcccCccccccccccc
Confidence 9999999998 788899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCcccc
Q 028027 203 VMPAPKKIK 211 (215)
Q Consensus 203 ~~~~~~~~~ 211 (215)
..+.+..+.
T Consensus 201 ~~~~~~~kk 209 (214)
T KOG4208|consen 201 KVPIKTRKK 209 (214)
T ss_pred cCCCccccc
Confidence 777765544
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=2e-19 Score=136.67 Aligned_cols=94 Identities=26% Similarity=0.470 Sum_probs=85.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
.....+++|||+|||+.+++++|+++|.+||.|.+|.++.++.|+.++|||||+|.+.++|+.|+..||+..|+|+.|+|
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33467789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCcC
Q 028027 128 HLIPPEHVHPKLWR 141 (215)
Q Consensus 128 ~~a~~~~~~~~~~~ 141 (215)
.++.++...+..+.
T Consensus 109 ~~a~~~~~~~~~~~ 122 (144)
T PLN03134 109 NPANDRPSAPRAYG 122 (144)
T ss_pred EeCCcCCCCCCCCC
Confidence 99987766554443
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.75 E-value=1.2e-17 Score=144.09 Aligned_cols=82 Identities=23% Similarity=0.445 Sum_probs=78.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~ 132 (215)
+.+|||+|||+.+++++|+++|++||.|.+|+|++++.||.++|||||+|.+.++|..||..|||..|+|+.|+|.|+..
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 44799999999999999999999999999999999998999999999999999999999999999999999999999876
Q ss_pred CC
Q 028027 133 EH 134 (215)
Q Consensus 133 ~~ 134 (215)
+.
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 54
No 4
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=3.3e-17 Score=130.51 Aligned_cols=85 Identities=27% Similarity=0.492 Sum_probs=81.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
...+..+|.|.||+.+++|++|+++|..||.|..|.|.+|+.||.++|||||.|.+.++|.+||..|||+-++.-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC
Q 028027 129 LIPPE 133 (215)
Q Consensus 129 ~a~~~ 133 (215)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99885
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=4.6e-17 Score=140.05 Aligned_cols=86 Identities=26% Similarity=0.441 Sum_probs=81.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
......++|||+|||+++++++|+++|+.||.|.+|+|+.+..+++++|||||+|.+.++|..||..||+..|.++.|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34567889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeCCC
Q 028027 128 HLIPPE 133 (215)
Q Consensus 128 ~~a~~~ 133 (215)
.++.+.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998764
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.72 E-value=7e-17 Score=106.93 Aligned_cols=70 Identities=36% Similarity=0.719 Sum_probs=67.3
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 028027 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (215)
Q Consensus 56 l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~ 126 (215)
|||+|||+.+++++|+++|++||.|..+.+..+ .++..+|||||+|.+.++|+.|+..|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5899999999999999999999999999999999885
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=5.7e-17 Score=139.82 Aligned_cols=83 Identities=28% Similarity=0.557 Sum_probs=79.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
+.++|||+|||+.+++++|+++|+.||+|.+|+|++++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35789999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred CCC
Q 028027 132 PEH 134 (215)
Q Consensus 132 ~~~ 134 (215)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 654
No 8
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=4.5e-16 Score=141.28 Aligned_cols=83 Identities=23% Similarity=0.383 Sum_probs=78.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
..++|||+|||+.+++++|+++|+.||.|.+|+|.+++.+|.++|||||+|.+.++|..|+..||++.|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred CCC
Q 028027 132 PEH 134 (215)
Q Consensus 132 ~~~ 134 (215)
+.+
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 654
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=7.6e-16 Score=132.53 Aligned_cols=105 Identities=21% Similarity=0.318 Sum_probs=89.2
Q ss_pred CCCCcccCCCCCCCCCCCC-CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHH
Q 028027 29 AADFLPLEGGPGRKLTEEK-PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEV 107 (215)
Q Consensus 29 ~~d~~~~~g~p~r~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~ 107 (215)
.+++..+.++++++..... ......++|||+|||+.+++++|+++|++||.|..|.|++++.+|.++|||||+|.+.++
T Consensus 168 ~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~ 247 (346)
T TIGR01659 168 NLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREE 247 (346)
T ss_pred HcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHH
Confidence 4566777777776543321 223456789999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHhCCceeCC--eEEEEEEeCCC
Q 028027 108 AEVVADAMHGYLLFE--HILQVHLIPPE 133 (215)
Q Consensus 108 a~~ai~~l~g~~l~g--~~l~V~~a~~~ 133 (215)
|+.||..||+..+.+ +.|.|.++...
T Consensus 248 A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 248 AQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 999999999998876 68999998764
No 10
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=3.2e-16 Score=113.53 Aligned_cols=86 Identities=19% Similarity=0.296 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
...+++||||||+..++|++|.++|+.+|+|..|.+-.|+.+-.+.|||||+|.+.++|..|+.-++|+.|+.+.|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 35689999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eCCCCC
Q 028027 130 IPPEHV 135 (215)
Q Consensus 130 a~~~~~ 135 (215)
...-..
T Consensus 113 D~GF~e 118 (153)
T KOG0121|consen 113 DAGFVE 118 (153)
T ss_pred cccchh
Confidence 765433
No 11
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=2.2e-16 Score=125.32 Aligned_cols=80 Identities=24% Similarity=0.451 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
..-++||||||+|.++.+.|+.+|++||+|.+..++.|+.||+++|||||+|.+.++|.+|+.. ..-.|+||+..|.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 3457899999999999999999999999999999999999999999999999999999999965 456799999999886
Q ss_pred C
Q 028027 131 P 131 (215)
Q Consensus 131 ~ 131 (215)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 4
No 12
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=9.3e-16 Score=126.81 Aligned_cols=102 Identities=23% Similarity=0.426 Sum_probs=88.1
Q ss_pred CCCcccCCCCCCCCCCCC-CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHH
Q 028027 30 ADFLPLEGGPGRKLTEEK-PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVA 108 (215)
Q Consensus 30 ~d~~~~~g~p~r~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a 108 (215)
.++..++|-|+...+.+. +....+.+|+|+|||+.+.+-||+.+|.+||.|.+|.|+.+ ...++|||||+|++.++|
T Consensus 72 ~~~~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~da 149 (376)
T KOG0125|consen 72 SNGAPTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADA 149 (376)
T ss_pred cCCCCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhH
Confidence 344566666765555443 33566789999999999999999999999999999999998 456899999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEEeCCC
Q 028027 109 EVVADAMHGYLLFEHILQVHLIPPE 133 (215)
Q Consensus 109 ~~ai~~l~g~~l~g~~l~V~~a~~~ 133 (215)
++|-..|||..+.||+|.|..++++
T Consensus 150 dRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 150 DRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHhhcceeeceEEEEeccchh
Confidence 9999999999999999999999876
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.64 E-value=2e-15 Score=100.39 Aligned_cols=70 Identities=33% Similarity=0.669 Sum_probs=65.0
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 028027 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (215)
Q Consensus 56 l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~ 126 (215)
|||+|||+++++++|+++|+.||.|..+.+..++. |.++|+|||+|.+.++|..|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999975 99999999999999999999999999999999874
No 14
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=4.2e-17 Score=124.71 Aligned_cols=83 Identities=28% Similarity=0.574 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
-.++.-|||||||+.+||.||..+|++||+|..|.+++|+.||+++||||+.|++..+.-.|++.|||..|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eCC
Q 028027 130 IPP 132 (215)
Q Consensus 130 a~~ 132 (215)
...
T Consensus 112 v~~ 114 (219)
T KOG0126|consen 112 VSN 114 (219)
T ss_pred ccc
Confidence 543
No 15
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.61 E-value=4.6e-15 Score=121.08 Aligned_cols=78 Identities=15% Similarity=0.355 Sum_probs=71.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~ 132 (215)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. ++|||||+|.+.++|+.|| .|||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998853 4689999999999999999 5999999999999999875
Q ss_pred CC
Q 028027 133 EH 134 (215)
Q Consensus 133 ~~ 134 (215)
-.
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 43
No 16
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.61 E-value=8.8e-16 Score=119.75 Aligned_cols=83 Identities=28% Similarity=0.423 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
.....+|.|.||.+.++.++|+.+|+.||.|-+|.|++|+.|+.++|||||.|....+|+.|++.|+|..|+|+.|+|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCC
Q 028027 130 IPP 132 (215)
Q Consensus 130 a~~ 132 (215)
|.-
T Consensus 90 ary 92 (256)
T KOG4207|consen 90 ARY 92 (256)
T ss_pred hhc
Confidence 853
No 17
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8e-16 Score=121.05 Aligned_cols=90 Identities=31% Similarity=0.555 Sum_probs=84.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
...-++||||+|...++|..|...|-.||.|..|.++.|.+++++||||||+|...++|.+||+.||+..|.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCC
Q 028027 130 IPPEHVHPKL 139 (215)
Q Consensus 130 a~~~~~~~~~ 139 (215)
+.|.......
T Consensus 87 AkP~kikegs 96 (298)
T KOG0111|consen 87 AKPEKIKEGS 96 (298)
T ss_pred cCCccccCCC
Confidence 9987665433
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=3.7e-15 Score=135.36 Aligned_cols=81 Identities=27% Similarity=0.506 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+++++|+++|..||.|.+|.++.++.+|+++|||||+|.+.++|+.|+..|||..|+|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred C
Q 028027 131 P 131 (215)
Q Consensus 131 ~ 131 (215)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.60 E-value=6.4e-15 Score=133.45 Aligned_cols=98 Identities=23% Similarity=0.442 Sum_probs=83.6
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHH
Q 028027 31 DFLPLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEV 110 (215)
Q Consensus 31 d~~~~~g~p~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ 110 (215)
++...+|+|.... +..+....++|||+|||++++|++|+.+|++||.|.+|+|++| .+|.++|||||+|.+.++|+.
T Consensus 38 ~g~r~~g~Pp~~~--~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~ 114 (578)
T TIGR01648 38 NGQRKYGGPPPGW--SGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKE 114 (578)
T ss_pred CCcccCCCCCCcc--cCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHH
Confidence 4456677766542 3344456799999999999999999999999999999999999 699999999999999999999
Q ss_pred HHHHhCCceeC-CeEEEEEEeC
Q 028027 111 VADAMHGYLLF-EHILQVHLIP 131 (215)
Q Consensus 111 ai~~l~g~~l~-g~~l~V~~a~ 131 (215)
||..||+..|. |+.|.|.++.
T Consensus 115 Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 115 AVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred HHHHcCCCeecCCccccccccc
Confidence 99999999885 7887777653
No 20
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=6.4e-15 Score=120.50 Aligned_cols=84 Identities=24% Similarity=0.424 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.+-+||||+.|+++++|..|+..|+.||+|..|+|+.+..||+++|||||+|.+..++..|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 028027 131 PPEH 134 (215)
Q Consensus 131 ~~~~ 134 (215)
..+.
T Consensus 179 RgRT 182 (335)
T KOG0113|consen 179 RGRT 182 (335)
T ss_pred cccc
Confidence 6543
No 21
>PLN03213 repressor of silencing 3; Provisional
Probab=99.57 E-value=1e-14 Score=126.38 Aligned_cols=79 Identities=15% Similarity=0.318 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCH--HHHHHHHHHhCCceeCCeEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDP--EVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~--~~a~~ai~~l~g~~l~g~~l~V 127 (215)
.....+||||||++.+++++|+.+|+.||.|.+|.|++ ++| ||||||+|.+. .++..||..|||..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34567899999999999999999999999999999994 477 89999999987 6899999999999999999999
Q ss_pred EEeCC
Q 028027 128 HLIPP 132 (215)
Q Consensus 128 ~~a~~ 132 (215)
..|++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 98865
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.57 E-value=1.6e-14 Score=132.12 Aligned_cols=79 Identities=23% Similarity=0.441 Sum_probs=75.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCCC
Q 028027 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (215)
Q Consensus 55 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~~ 133 (215)
+|||+|||+++||++|+++|+.||.|.+|+|+++..|++++|||||+|.+.++|+.|+..||+..|.|+.|+|.|+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 7999999999999999999999999999999999989999999999999999999999999999999999999997643
No 23
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=6e-15 Score=107.91 Aligned_cols=83 Identities=18% Similarity=0.392 Sum_probs=79.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
..+..|||.++...++|++|.+.|..||+|..+++..|+.||-.+|||+|+|++...|+.|+..|||..|.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 028027 131 PPE 133 (215)
Q Consensus 131 ~~~ 133 (215)
--.
T Consensus 150 Fv~ 152 (170)
T KOG0130|consen 150 FVK 152 (170)
T ss_pred Eec
Confidence 543
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.56 E-value=2.9e-14 Score=128.75 Aligned_cols=83 Identities=27% Similarity=0.486 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.+.|..||..|||..|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCC
Q 028027 131 PPE 133 (215)
Q Consensus 131 ~~~ 133 (215)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 654
No 25
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=2.2e-14 Score=122.89 Aligned_cols=88 Identities=23% Similarity=0.477 Sum_probs=81.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC-Ce
Q 028027 45 EEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF-EH 123 (215)
Q Consensus 45 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~-g~ 123 (215)
.+.++...++.||||.||.++.|++|.-+|...|.|..++|+.|+.+|.+||||||+|.+.+.|+.||+.||+++|. |+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 55566678899999999999999999999999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEEeCC
Q 028027 124 ILQVHLIPP 132 (215)
Q Consensus 124 ~l~V~~a~~ 132 (215)
.|.|+.+..
T Consensus 155 ~igvc~Sva 163 (506)
T KOG0117|consen 155 LLGVCVSVA 163 (506)
T ss_pred EeEEEEeee
Confidence 999988754
No 26
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=110.70 Aligned_cols=79 Identities=27% Similarity=0.472 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
-.+.||||||+..+++.+|+..|..||.|..|.|.+++ .|||||+|++..+|+.|+..|+|..|.|..|+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 46889999999999999999999999999999998765 5899999999999999999999999999999999987
Q ss_pred CCCC
Q 028027 132 PEHV 135 (215)
Q Consensus 132 ~~~~ 135 (215)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6544
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.55 E-value=2.7e-14 Score=127.44 Aligned_cols=80 Identities=33% Similarity=0.611 Sum_probs=77.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~ 132 (215)
.++|||+|||..+++++|+.+|+.||.|..|.++.+..+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999988899999999999999999999999999999999999999763
No 28
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.55 E-value=5.7e-14 Score=113.11 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
..+.+|||+||++.+|+++|+++|+.||.|.+|.|+++. ...+||||+|.+.++|+.|+ .|+|..|.++.|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 356899999999999999999999999999999999884 34579999999999999999 79999999999999876
Q ss_pred CCCC
Q 028027 131 PPEH 134 (215)
Q Consensus 131 ~~~~ 134 (215)
..-.
T Consensus 79 ~~y~ 82 (243)
T PLN03121 79 GQYE 82 (243)
T ss_pred cccc
Confidence 5433
No 29
>smart00362 RRM_2 RNA recognition motif.
Probab=99.55 E-value=4.7e-14 Score=92.58 Aligned_cols=72 Identities=35% Similarity=0.678 Sum_probs=67.3
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 55 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
+|||+|||..++.++|+++|.+||.|..+.+..+. +.++|+|||+|.+.+.|+.|+..+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998875 7788999999999999999999999999999998863
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.6e-14 Score=116.79 Aligned_cols=81 Identities=22% Similarity=0.463 Sum_probs=78.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCCC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~~ 133 (215)
.-|||+.|...++-++|++.|..||+|.+++|++|..|++++|||||.|.+.++|+.||..|||..|++|.|+-.||..+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred C
Q 028027 134 H 134 (215)
Q Consensus 134 ~ 134 (215)
.
T Consensus 143 p 143 (321)
T KOG0148|consen 143 P 143 (321)
T ss_pred c
Confidence 5
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=3.4e-14 Score=121.26 Aligned_cols=120 Identities=23% Similarity=0.391 Sum_probs=99.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc-eeCC-
Q 028027 45 EEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY-LLFE- 122 (215)
Q Consensus 45 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~-~l~g- 122 (215)
..+.++.+.-.+|||.||.+++|.||+.+|++||.|.+|.|++|+.||.++|||||.|.+.++|.+|+..|++. .|.|
T Consensus 26 ~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 26 HTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred CCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 33445566678999999999999999999999999999999999999999999999999999999999999885 4655
Q ss_pred -eEEEEEEeCCCCCCCCCcCCCCCCCCCCChHHHHHHHhhhhcCHHHHHHHHHHH
Q 028027 123 -HILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEKI 176 (215)
Q Consensus 123 -~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~e~~~~~~~~ 176 (215)
.+|.|++++.+..+- +...++.....+|.-++.+...+..++
T Consensus 106 ~~pvqvk~Ad~E~er~------------~~e~KLFvg~lsK~~te~evr~iFs~f 148 (510)
T KOG0144|consen 106 HHPVQVKYADGERERI------------VEERKLFVGMLSKQCTENEVREIFSRF 148 (510)
T ss_pred Ccceeecccchhhhcc------------ccchhhhhhhccccccHHHHHHHHHhh
Confidence 678888887765431 233445566778888888888888776
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.54 E-value=1.8e-14 Score=110.42 Aligned_cols=81 Identities=23% Similarity=0.437 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
+...+||||||+..++++.|+++|-+.|+|.++++++++.+..++|||||+|.++++|+-|++.||...|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C
Q 028027 131 P 131 (215)
Q Consensus 131 ~ 131 (215)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 33
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.53 E-value=5.1e-14 Score=128.82 Aligned_cols=82 Identities=27% Similarity=0.500 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+||++.+++++|+++|+.||.|.+|.++.+ .+|.++|||||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 45678999999999999999999999999999999999 58999999999999999999999999999999999999998
Q ss_pred CCC
Q 028027 131 PPE 133 (215)
Q Consensus 131 ~~~ 133 (215)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 754
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=5.7e-14 Score=113.63 Aligned_cols=79 Identities=23% Similarity=0.404 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
..++.++||||||+..++|++|+..|++||.|.+|++..++ ||+||.|.+.|.|..||-.||+..|+|..++|.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 45678999999999999999999999999999999999885 899999999999999999999999999999999
Q ss_pred EeCCC
Q 028027 129 LIPPE 133 (215)
Q Consensus 129 ~a~~~ 133 (215)
|-+..
T Consensus 234 WGKe~ 238 (321)
T KOG0148|consen 234 WGKEG 238 (321)
T ss_pred ccccC
Confidence 97654
No 35
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=6.7e-14 Score=91.46 Aligned_cols=71 Identities=39% Similarity=0.685 Sum_probs=66.9
Q ss_pred EcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 58 IGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 58 V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
|+|||..+++++|+.+|.+||.|..+.+..++.++.++|+|||+|.+.++|..|+..|++..++|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988789999999999999999999999999999999998873
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.52 E-value=8.1e-14 Score=124.34 Aligned_cols=82 Identities=17% Similarity=0.366 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||. |+|..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999899999999999999999999995 899999999999988
Q ss_pred eCC
Q 028027 130 IPP 132 (215)
Q Consensus 130 a~~ 132 (215)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 654
No 37
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.52 E-value=1.1e-14 Score=111.48 Aligned_cols=103 Identities=25% Similarity=0.401 Sum_probs=91.0
Q ss_pred cccCCCCCCCCCCCC--CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEE-EEeecCCCCCcccEEEEEEcCHHHHH
Q 028027 33 LPLEGGPGRKLTEEK--PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRL-RIARNKKTGQSKHFGFIEFNDPEVAE 109 (215)
Q Consensus 33 ~~~~g~p~r~~~~~~--~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~~~tg~~~g~afV~F~~~~~a~ 109 (215)
++|+|+|++....+. ..-..+..|||+||.+.++|..|.+.|+.||.+... .++++..||.++|||||.|.+.+.+.
T Consensus 74 VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 74 VKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred HHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHH
Confidence 789999999877663 223456789999999999999999999999998664 78899889999999999999999999
Q ss_pred HHHHHhCCceeCCeEEEEEEeCCCCC
Q 028027 110 VVADAMHGYLLFEHILQVHLIPPEHV 135 (215)
Q Consensus 110 ~ai~~l~g~~l~g~~l~V~~a~~~~~ 135 (215)
+|+..|||..+..+.++|.++..+..
T Consensus 154 ~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 154 AAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HHHHHhccchhcCCceEEEEEEecCC
Confidence 99999999999999999999875543
No 38
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=6.5e-14 Score=112.87 Aligned_cols=98 Identities=23% Similarity=0.440 Sum_probs=86.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...+.|.|.-||..+|+++|+.+|+..|+|++|++++|+-+|.+.|||||.|.++.+|++|+..|||..|..+.|+|+++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 45577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCCCCC
Q 028027 131 PPEHVHPKLWRGFNPRYKPVD 151 (215)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~ 151 (215)
+|.... .++.+.+....|
T Consensus 119 RPSs~~---Ik~aNLYvSGlP 136 (360)
T KOG0145|consen 119 RPSSDS---IKDANLYVSGLP 136 (360)
T ss_pred cCChhh---hcccceEEecCC
Confidence 886543 234444443333
No 39
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.50 E-value=1.2e-13 Score=112.98 Aligned_cols=80 Identities=33% Similarity=0.679 Sum_probs=77.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~ 132 (215)
.++|||+|||+.+++++|+++|..||.|..+.+..++.+|.++|||||.|.+.++|..|+..++|..|.|+.|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999988999999999999999999999999999999999999999653
No 40
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.9e-13 Score=95.69 Aligned_cols=80 Identities=26% Similarity=0.499 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....+.|||.|||+.+|.++..++|+.||.|..|+|-..+ ..+|-|||.|++..+|..|++.|+|+.+.++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3567889999999999999999999999999999997654 4579999999999999999999999999999999988
Q ss_pred eCC
Q 028027 130 IPP 132 (215)
Q Consensus 130 a~~ 132 (215)
-.+
T Consensus 92 yq~ 94 (124)
T KOG0114|consen 92 YQP 94 (124)
T ss_pred cCH
Confidence 543
No 41
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=2.4e-14 Score=122.22 Aligned_cols=97 Identities=23% Similarity=0.358 Sum_probs=85.1
Q ss_pred CCCCCCCCCCCC--CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028027 39 PGRKLTEEKPLV--NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH 116 (215)
Q Consensus 39 p~r~~~~~~~~~--~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~ 116 (215)
|..+.+++.+.+ .+.+.||||.|+..++|.+++++|++||.|++|.|.++. .|.+||||||.|.+.+.|..||+.||
T Consensus 108 pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 108 PVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred ceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhc
Confidence 666666665443 347899999999999999999999999999999999996 89999999999999999999999999
Q ss_pred Cc-eeCC--eEEEEEEeCCCCCC
Q 028027 117 GY-LLFE--HILQVHLIPPEHVH 136 (215)
Q Consensus 117 g~-~l~g--~~l~V~~a~~~~~~ 136 (215)
|. .+.| .+|.|+||++.+.+
T Consensus 187 g~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 187 GTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred cceeeccCCCceEEEecccCCCc
Confidence 95 4665 68999999987654
No 42
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.48 E-value=1e-13 Score=121.52 Aligned_cols=82 Identities=28% Similarity=0.498 Sum_probs=78.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCCC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~~ 133 (215)
+.|||||||+++++++|..+|+..|.|.+++++.|++||+++||||++|.+.++|..|+..|||..+.|+.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 028027 134 HV 135 (215)
Q Consensus 134 ~~ 135 (215)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 43
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.47 E-value=6.7e-13 Score=87.47 Aligned_cols=74 Identities=36% Similarity=0.671 Sum_probs=68.5
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 55 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
+|+|+|||+.+++++|+.+|..||.|..+.+..+. .+.++|+|||+|.+.++|..|+..+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999886 447789999999999999999999999999999998864
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=9.2e-13 Score=106.26 Aligned_cols=82 Identities=22% Similarity=0.437 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
..++.|||-||.++++|..|+++|++||.|..|++++|..|.+.+|||||.+.+.++|..||..|||+.++++.|.|.+.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 34688999999999999999999999999999999999988999999999999999999999999999999999999986
Q ss_pred CC
Q 028027 131 PP 132 (215)
Q Consensus 131 ~~ 132 (215)
..
T Consensus 356 tn 357 (360)
T KOG0145|consen 356 TN 357 (360)
T ss_pred cC
Confidence 54
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.43 E-value=1.2e-12 Score=117.87 Aligned_cols=79 Identities=23% Similarity=0.416 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 51 NKATVLYIGRIPH-GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 51 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+++|||+|||+ .+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4568999999998 69999999999999999999998874 58999999999999999999999999999999999
Q ss_pred eCCCC
Q 028027 130 IPPEH 134 (215)
Q Consensus 130 a~~~~ 134 (215)
+....
T Consensus 348 s~~~~ 352 (481)
T TIGR01649 348 SKQQN 352 (481)
T ss_pred ccccc
Confidence 86543
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.41 E-value=1.2e-12 Score=117.70 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh--CCceeCCeEEEEEE
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM--HGYLLFEHILQVHL 129 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l--~g~~l~g~~l~V~~ 129 (215)
++++|||+|||+.+++++|+++|++||.|.+|.++.+ +|||||+|.+.++|+.|+..| ++..|+|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999864 479999999999999999864 78899999999999
Q ss_pred eCCC
Q 028027 130 IPPE 133 (215)
Q Consensus 130 a~~~ 133 (215)
+...
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8754
No 47
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1.9e-13 Score=114.72 Aligned_cols=76 Identities=29% Similarity=0.569 Sum_probs=74.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
-++||||.|.+.+.|+.|+..|..||+|.+|.+..|+.|++++|||||+|+-++.|+.|++.|||..++||.|+|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 4889999999999999999999999999999999999999999999999999999999999999999999999987
No 48
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.39 E-value=2e-12 Score=117.34 Aligned_cols=75 Identities=28% Similarity=0.482 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccC--CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQF--GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~--G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..++|||+||++++++++|+++|+.| |.|..|.+++ +||||+|.+.++|..|+..|||..|+|+.|+|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 9999997753 5999999999999999999999999999999999
Q ss_pred eCCCC
Q 028027 130 IPPEH 134 (215)
Q Consensus 130 a~~~~ 134 (215)
+++..
T Consensus 304 Akp~~ 308 (578)
T TIGR01648 304 AKPVD 308 (578)
T ss_pred ccCCC
Confidence 98754
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.5e-12 Score=114.19 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=76.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
+-..|+|.|||+.|...+|..+|+.||.|..|.|++.. .|+.+|||||.|....+|..|++.|||..|+|++|-|.||-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 46889999999999999999999999999999999876 67777999999999999999999999999999999999997
Q ss_pred CCC
Q 028027 132 PEH 134 (215)
Q Consensus 132 ~~~ 134 (215)
++.
T Consensus 195 ~Kd 197 (678)
T KOG0127|consen 195 DKD 197 (678)
T ss_pred ccc
Confidence 653
No 50
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.1e-12 Score=113.66 Aligned_cols=100 Identities=25% Similarity=0.443 Sum_probs=89.0
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHH
Q 028027 29 AADFLPLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVA 108 (215)
Q Consensus 29 ~~d~~~~~g~p~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a 108 (215)
..++..+.|+|+|.......+. .|||.||++.++..+|.++|+.||.|.+|++..+. .| ++|| ||+|.+.+.|
T Consensus 56 ~~n~~~~~~~~~rim~s~rd~~----~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a 128 (369)
T KOG0123|consen 56 TMNFDVLKGKPIRIMWSQRDPS----LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESA 128 (369)
T ss_pred HcCCcccCCcEEEeehhccCCc----eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHH
Confidence 5677889999999887665443 39999999999999999999999999999999996 66 9999 9999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEEeCCCCC
Q 028027 109 EVVADAMHGYLLFEHILQVHLIPPEHV 135 (215)
Q Consensus 109 ~~ai~~l~g~~l~g~~l~V~~a~~~~~ 135 (215)
+.|+..|||..+.|+.|.|.....+..
T Consensus 129 ~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 129 KKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred HHHHHHhcCcccCCCeeEEeeccchhh
Confidence 999999999999999999988766544
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.2e-12 Score=100.85 Aligned_cols=80 Identities=26% Similarity=0.492 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||.++.+.+|+++|.+||.|..|.|..-+ ..-.||||+|++..+|+.||..-+|+.++|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 356899999999999999999999999999999885432 23479999999999999999999999999999999998
Q ss_pred CCC
Q 028027 131 PPE 133 (215)
Q Consensus 131 ~~~ 133 (215)
..-
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 764
No 52
>smart00361 RRM_1 RNA recognition motif.
Probab=99.37 E-value=3.4e-12 Score=85.08 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=55.4
Q ss_pred HHHHHHHhc----cCCCeeEEE-EeecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 67 EKEMQAFFS----QFGAIKRLR-IARNKKT--GQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 67 e~~L~~~F~----~~G~v~~v~-i~~~~~t--g~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
+++|+++|+ .||.|.++. ++.++.+ +.++|||||+|.+.++|..|+..|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 568888888 999999995 6666656 8999999999999999999999999999999999863
No 53
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=8.7e-13 Score=106.78 Aligned_cols=87 Identities=30% Similarity=0.523 Sum_probs=82.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
..+++|.|||-+||..+.+.+|...|-.||.|.+.++..|+.|+.+++||||.|.+..+++.||..|||+.|+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCC
Q 028027 129 LIPPEHV 135 (215)
Q Consensus 129 ~a~~~~~ 135 (215)
+.+|+..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 9887654
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=7e-12 Score=110.05 Aligned_cols=85 Identities=28% Similarity=0.507 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh-----CC-ceeCCe
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM-----HG-YLLFEH 123 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l-----~g-~~l~g~ 123 (215)
.....+|||.|||+++|++.|...|++||+|..+.|+.++.||.++|.|||.|.+..+|+.||..- .| +.|+|+
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 345689999999999999999999999999999999999999999999999999999999999866 34 789999
Q ss_pred EEEEEEeCCCC
Q 028027 124 ILQVHLIPPEH 134 (215)
Q Consensus 124 ~l~V~~a~~~~ 134 (215)
.|.|..+-++.
T Consensus 369 ~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 369 LLKVTLAVTRK 379 (678)
T ss_pred EEeeeeccchH
Confidence 99999987654
No 55
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.35 E-value=8.9e-12 Score=79.27 Aligned_cols=56 Identities=29% Similarity=0.559 Sum_probs=50.8
Q ss_pred HHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 70 MQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 70 L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
|..+|++||.|..+.+..+. +++|||+|.+.++|..|+..|||..++|+.|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 589999999999999999999999999999999986
No 56
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.34 E-value=1.5e-12 Score=114.19 Aligned_cols=79 Identities=28% Similarity=0.615 Sum_probs=75.3
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCCC
Q 028027 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (215)
Q Consensus 55 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~~ 133 (215)
.||||||.+++++++|+.+|..||.|..|.++.+.+||.++|||||+|.+.++|..|+..|||+.|-|+.|+|.....+
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 3999999999999999999999999999999999889999999999999999999999999999999999999886554
No 57
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.2e-12 Score=108.05 Aligned_cols=83 Identities=25% Similarity=0.454 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
.++...|||.-|.+-++.++|.-+|+.||.|.+|.++++..||.+..||||+|.+.++|+.|.-.|++..|+.++|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCC
Q 028027 130 IPP 132 (215)
Q Consensus 130 a~~ 132 (215)
+.+
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 754
No 58
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=4.9e-12 Score=108.63 Aligned_cols=76 Identities=25% Similarity=0.470 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
....|||.||+.++|++.|..+|.+||.|..|..++| ||||.|.+.++|..|++.|||+.|+|..|.|.+|+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3467999999999999999999999999999988765 99999999999999999999999999999999999
Q ss_pred CCCC
Q 028027 132 PEHV 135 (215)
Q Consensus 132 ~~~~ 135 (215)
|...
T Consensus 330 P~~k 333 (506)
T KOG0117|consen 330 PVDK 333 (506)
T ss_pred Chhh
Confidence 8543
No 59
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=4.8e-12 Score=102.50 Aligned_cols=100 Identities=20% Similarity=0.356 Sum_probs=86.1
Q ss_pred CCCCCCCCCCCCCCC-CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028027 37 GGPGRKLTEEKPLVN-KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115 (215)
Q Consensus 37 g~p~r~~~~~~~~~~-~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l 115 (215)
.+|+.++|.+.+... +.+.||||.|...-.|+|++.+|..||.|.+|.+.+.. .|.++|+|||.|.+.-+|+.||..|
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aL 80 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINAL 80 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHh
Confidence 467777776654433 77899999999999999999999999999999999997 8999999999999999999999999
Q ss_pred CCce-eCC--eEEEEEEeCCCCCCC
Q 028027 116 HGYL-LFE--HILQVHLIPPEHVHP 137 (215)
Q Consensus 116 ~g~~-l~g--~~l~V~~a~~~~~~~ 137 (215)
+|.. +.| ..|.|.+++.++.+.
T Consensus 81 HgSqTmpGASSSLVVK~ADTdkER~ 105 (371)
T KOG0146|consen 81 HGSQTMPGASSSLVVKFADTDKERT 105 (371)
T ss_pred cccccCCCCccceEEEeccchHHHH
Confidence 9963 554 679999998876543
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.28 E-value=8.9e-12 Score=101.96 Aligned_cols=73 Identities=29% Similarity=0.581 Sum_probs=69.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCCC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~~ 133 (215)
..|||||||..+++.+|+.+|++||.|..|.|+++ ||||..++...++.||..|+|+.|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36999999999999999999999999999999976 9999999999999999999999999999999998876
Q ss_pred C
Q 028027 134 H 134 (215)
Q Consensus 134 ~ 134 (215)
+
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.22 E-value=1.3e-11 Score=101.00 Aligned_cols=97 Identities=18% Similarity=0.255 Sum_probs=85.4
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHH
Q 028027 28 GAADFLPLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEV 107 (215)
Q Consensus 28 ~~~d~~~~~g~p~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~ 107 (215)
.++++..|+|..+.+..... ....+++|+||||.+.++..+|+..|..||+|..|.|+++ |+||.|.-.++
T Consensus 54 rNLhgYtLhg~nInVeaSks-Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~ed 124 (346)
T KOG0109|consen 54 RNLHGYTLHGVNINVEASKS-KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAED 124 (346)
T ss_pred hhcccceecceEEEEEeccc-cCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccc
Confidence 45778889998776544332 2456789999999999999999999999999999999876 99999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEEeCCC
Q 028027 108 AEVVADAMHGYLLFEHILQVHLIPPE 133 (215)
Q Consensus 108 a~~ai~~l~g~~l~g~~l~V~~a~~~ 133 (215)
|..|+..||+..+.|++++|++++++
T Consensus 125 a~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 125 AVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred hHHHHhcccccccccceeeeeeeccc
Confidence 99999999999999999999998775
No 62
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=3.7e-11 Score=101.13 Aligned_cols=105 Identities=20% Similarity=0.270 Sum_probs=88.4
Q ss_pred CCCCCcccCCCCCCCCCCCCCC------------CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcc
Q 028027 28 GAADFLPLEGGPGRKLTEEKPL------------VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSK 95 (215)
Q Consensus 28 ~~~d~~~~~g~p~r~~~~~~~~------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~ 95 (215)
+..++..+-|+.+.+...+.-+ ...-.+|||..+.++.+++||+.+|..||+|..|.+.+++.++.++
T Consensus 173 EqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~Hk 252 (544)
T KOG0124|consen 173 EQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHK 252 (544)
T ss_pred HHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCcc
Confidence 4556777777766544332211 2345789999999999999999999999999999999999888999
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 028027 96 HFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (215)
Q Consensus 96 g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~ 132 (215)
|||||+|.+..+...|+..||-+.|+|..|+|-.+-.
T Consensus 253 GyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 253 GYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred ceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 9999999999999999999999999999999976543
No 63
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.20 E-value=6.6e-11 Score=93.86 Aligned_cols=83 Identities=22% Similarity=0.432 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHH----HhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQA----FFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~----~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~ 126 (215)
.+..||||.||+..+..++|+. +|++||.|.+|.... |.+.+|-|||.|.+.+.|-.|+..|+|+.+.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999998877 999999999987753 788999999999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q 028027 127 VHLIPPEHVH 136 (215)
Q Consensus 127 V~~a~~~~~~ 136 (215)
|.+|..+...
T Consensus 84 iqyA~s~sdi 93 (221)
T KOG4206|consen 84 IQYAKSDSDI 93 (221)
T ss_pred eecccCccch
Confidence 9999877654
No 64
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.19 E-value=4.9e-11 Score=100.66 Aligned_cols=98 Identities=21% Similarity=0.410 Sum_probs=86.1
Q ss_pred CCCCCCCCCCCCCC----CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 028027 39 PGRKLTEEKPLVNK----ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114 (215)
Q Consensus 39 p~r~~~~~~~~~~~----~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~ 114 (215)
|+++.++..+.... ...|||++||.++++.+++++|.+||.|..+.++.|..+.+++||+||.|.+.+++..++.
T Consensus 79 ~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~- 157 (311)
T KOG4205|consen 79 PKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL- 157 (311)
T ss_pred ceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-
Confidence 55677777766544 4489999999999999999999999999999999999999999999999999999999884
Q ss_pred hCCceeCCeEEEEEEeCCCCCCC
Q 028027 115 MHGYLLFEHILQVHLIPPEHVHP 137 (215)
Q Consensus 115 l~g~~l~g~~l~V~~a~~~~~~~ 137 (215)
..-+.|.|+.+.|..|.|+....
T Consensus 158 ~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 158 QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred cceeeecCceeeEeeccchhhcc
Confidence 57789999999999998876543
No 65
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.14 E-value=1.9e-10 Score=104.03 Aligned_cols=74 Identities=27% Similarity=0.513 Sum_probs=61.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccC------------CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQF------------GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHG 117 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~------------G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g 117 (215)
....++|||||||+.+|+++|.++|.+| +.|..+.+ +..+|||||+|.+.++|..|| .|||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCC
Confidence 3456899999999999999999999875 23444444 344689999999999999999 5999
Q ss_pred ceeCCeEEEEEEe
Q 028027 118 YLLFEHILQVHLI 130 (215)
Q Consensus 118 ~~l~g~~l~V~~a 130 (215)
..|.|..|.|...
T Consensus 245 ~~~~g~~l~v~r~ 257 (509)
T TIGR01642 245 IIYSNVFLKIRRP 257 (509)
T ss_pred eEeeCceeEecCc
Confidence 9999999998643
No 66
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.14 E-value=5.4e-11 Score=100.38 Aligned_cols=85 Identities=25% Similarity=0.442 Sum_probs=76.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
+.++|||++|+|.++++.|+++|.+||+|..|.+++++.+++++||+||+|.+.+.+.+++. ...+.|+|+.|.+.-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999998888874 35678999999999888
Q ss_pred CCCCCC
Q 028027 132 PEHVHP 137 (215)
Q Consensus 132 ~~~~~~ 137 (215)
++....
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 776443
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.12 E-value=1.5e-10 Score=105.21 Aligned_cols=99 Identities=13% Similarity=0.246 Sum_probs=83.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.-++|||||+|+..+++.+|..+|+.||.|.+|.++-. +|||||.+....+|..|+..|+.+.+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 45689999999999999999999999999999988765 489999999999999999999999999999999999
Q ss_pred CCCCCCCCCc--CCCCCCCCCCChHHH
Q 028027 131 PPEHVHPKLW--RGFNPRYKPVDRVQV 155 (215)
Q Consensus 131 ~~~~~~~~~~--~~~~~~~~~~~~~~~ 155 (215)
...-.+..+. ......+.-++|..+
T Consensus 493 ~g~G~kse~k~~wD~~lGVt~IP~~kL 519 (894)
T KOG0132|consen 493 VGKGPKSEYKDYWDVELGVTYIPWEKL 519 (894)
T ss_pred ccCCcchhhhhhhhcccCeeEeehHhc
Confidence 8766555222 223335566788765
No 68
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.11 E-value=2.6e-10 Score=98.03 Aligned_cols=81 Identities=16% Similarity=0.361 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhc-cCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFS-QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
...+.+||.|||+++.+.+|+++|. ..|+|+.|.+..|. +|+++|+|.|+|.+++.+++|++.||.+.+.|+.|.|.-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456799999999999999999996 48999999999995 999999999999999999999999999999999999987
Q ss_pred eCC
Q 028027 130 IPP 132 (215)
Q Consensus 130 a~~ 132 (215)
...
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 544
No 69
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.10 E-value=5e-10 Score=99.09 Aligned_cols=84 Identities=14% Similarity=0.346 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..-++.|||++|+..+.-.+|..+|++||.|.-..++.+-.+...++||||++.+.++|..||..|+.+.|+|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34568899999999999999999999999999999999877888899999999999999999999999999999999988
Q ss_pred eCCC
Q 028027 130 IPPE 133 (215)
Q Consensus 130 a~~~ 133 (215)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 7543
No 70
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=4.5e-10 Score=94.03 Aligned_cols=78 Identities=26% Similarity=0.459 Sum_probs=68.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH-HhCCceeCCeEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD-AMHGYLLFEHILQV 127 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~-~l~g~~l~g~~l~V 127 (215)
......+|||++|-..+++.+|++.|.+||+|.++.+.... ++|||+|.+.++|+.|.. .+|...|+|.+|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 34566899999999999999999999999999999887653 699999999999998885 45656799999999
Q ss_pred EEeCC
Q 028027 128 HLIPP 132 (215)
Q Consensus 128 ~~a~~ 132 (215)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99988
No 71
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=4.2e-10 Score=97.73 Aligned_cols=75 Identities=24% Similarity=0.387 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCCC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~~ 133 (215)
..|||| +++|+.+|.++|+.+|+|.++++++|. | +.|||||.|.++.+|.+||..||...+.|++|++-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 889999999999999999999999997 5 9999999999999999999999999999999999998655
Q ss_pred C
Q 028027 134 H 134 (215)
Q Consensus 134 ~ 134 (215)
.
T Consensus 76 ~ 76 (369)
T KOG0123|consen 76 P 76 (369)
T ss_pred C
Confidence 4
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.02 E-value=1.7e-09 Score=88.12 Aligned_cols=84 Identities=20% Similarity=0.432 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
+..+++|+|.|||+.++++||+++|..||.+..+.+..++ +|.+.|.|-|.|...++|.+|++.++|..++|+.+.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3455789999999999999999999999999999999996 999999999999999999999999999999999999988
Q ss_pred eCCCC
Q 028027 130 IPPEH 134 (215)
Q Consensus 130 a~~~~ 134 (215)
..+..
T Consensus 159 i~~~~ 163 (243)
T KOG0533|consen 159 ISSPS 163 (243)
T ss_pred ecCcc
Confidence 65543
No 73
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.00 E-value=4.4e-09 Score=88.10 Aligned_cols=82 Identities=18% Similarity=0.239 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCee--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIK--------RLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~ 121 (215)
....+.|||+|||.++|.+++..+|+.||.|. .|.|.++. .|..+|-|++.|-..+++..|+..|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34456799999999999999999999999884 37888886 6999999999999999999999999999999
Q ss_pred CeEEEEEEeCC
Q 028027 122 EHILQVHLIPP 132 (215)
Q Consensus 122 g~~l~V~~a~~ 132 (215)
|+.|+|+.|+=
T Consensus 210 g~~~rVerAkf 220 (382)
T KOG1548|consen 210 GKKLRVERAKF 220 (382)
T ss_pred CcEEEEehhhh
Confidence 99999998753
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=4.5e-10 Score=101.40 Aligned_cols=84 Identities=25% Similarity=0.510 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...+.|+|.|||+..+-.+++.+|..||.|.+|+|+.-...+.++|||||+|-++.+|.+|++.|.++-|.||.|.++|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 44678999999999999999999999999999999987567788999999999999999999999998999999999999
Q ss_pred CCCC
Q 028027 131 PPEH 134 (215)
Q Consensus 131 ~~~~ 134 (215)
....
T Consensus 691 ~~d~ 694 (725)
T KOG0110|consen 691 KSDN 694 (725)
T ss_pred ccch
Confidence 7653
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=2.8e-09 Score=96.35 Aligned_cols=78 Identities=27% Similarity=0.501 Sum_probs=70.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCC----CcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTG----QSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg----~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
.++|||.||++.+|.++|...|...|.|.++.|...+ .+ .+.|||||+|.+.++|+.|+..|+|+.|+|+.|.|+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3449999999999999999999999999999887765 33 245999999999999999999999999999999999
Q ss_pred EeC
Q 028027 129 LIP 131 (215)
Q Consensus 129 ~a~ 131 (215)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 987
No 76
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.94 E-value=5.8e-09 Score=94.34 Aligned_cols=105 Identities=19% Similarity=0.301 Sum_probs=84.1
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecC---CCCCcccEEEEEEcC
Q 028027 28 GAADFLPLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNK---KTGQSKHFGFIEFND 104 (215)
Q Consensus 28 ~~~d~~~~~g~p~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~---~tg~~~g~afV~F~~ 104 (215)
+..+..+..+.|......-+...+..+.|||+||++.+++..|...|+.||+|..++|+..+ +....+.+|||.|-+
T Consensus 149 ~r~~~~p~~~~~s~~~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmn 228 (877)
T KOG0151|consen 149 SRFDPLPSRFDPSGRPGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMN 228 (877)
T ss_pred hccCCCccccCCCCCCCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehh
Confidence 44454554555544333333445667889999999999999999999999999999888764 234566899999999
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 028027 105 PEVAEVVADAMHGYLLFEHILQVHLIPP 132 (215)
Q Consensus 105 ~~~a~~ai~~l~g~~l~g~~l~V~~a~~ 132 (215)
..+|++|++.|+|..+.+..+++-|.++
T Consensus 229 R~D~era~k~lqg~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 229 RADAERALKELQGIIVMEYEMKLGWGKA 256 (877)
T ss_pred hhhHHHHHHHhcceeeeeeeeeeccccc
Confidence 9999999999999999999999999854
No 77
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.91 E-value=4.4e-09 Score=84.85 Aligned_cols=79 Identities=20% Similarity=0.436 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
..+...||+|.|...++.+.|-..|.+|-.-....+++++.||+++||+||.|.+..++..|+..|||..++.+.|.++
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 3566889999999999999999999999888888999999999999999999999999999999999999999888754
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.89 E-value=3.8e-09 Score=90.97 Aligned_cols=75 Identities=27% Similarity=0.371 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||.|||.++|+..|++-|..||.|..+.|+ +.|+++| .|.|.++++|++|+..|+|..|+|+.|.|.+.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 456889999999999999999999999999999884 3577776 99999999999999999999999999999873
No 79
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.86 E-value=7.6e-09 Score=84.31 Aligned_cols=85 Identities=20% Similarity=0.366 Sum_probs=78.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
....+...+||+|+.+.+|.+.+...|..||.|..+.+..++.+|.++||+||+|.+.+.++.++. |||..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 445778999999999999999999999999999999999999888999999999999999999997 9999999999999
Q ss_pred EEeCCC
Q 028027 128 HLIPPE 133 (215)
Q Consensus 128 ~~a~~~ 133 (215)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 887554
No 80
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.81 E-value=5.3e-08 Score=77.40 Aligned_cols=86 Identities=16% Similarity=0.294 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeec-CCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC---CeEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARN-KKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF---EHILQ 126 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~-~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~---g~~l~ 126 (215)
...+||||.+||.++...+|+.+|..|-..+.+.+... +.....+-+|||+|.+...|.+|+..|||..++ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 45799999999999999999999999876666655443 222234579999999999999999999999887 78999
Q ss_pred EEEeCCCCCC
Q 028027 127 VHLIPPEHVH 136 (215)
Q Consensus 127 V~~a~~~~~~ 136 (215)
+++++.....
T Consensus 112 iElAKSNtK~ 121 (284)
T KOG1457|consen 112 IELAKSNTKR 121 (284)
T ss_pred eeehhcCccc
Confidence 9999875543
No 81
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.77 E-value=3.4e-08 Score=86.52 Aligned_cols=83 Identities=23% Similarity=0.372 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
.....+|||.|||++++.++|+++|.+||.|....|..-...+...+||||+|.+.+.++.||.+ +-..|+++.|.|+.
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 34556799999999999999999999999999887765432344449999999999999999976 57789999999998
Q ss_pred eCCC
Q 028027 130 IPPE 133 (215)
Q Consensus 130 a~~~ 133 (215)
..+.
T Consensus 364 k~~~ 367 (419)
T KOG0116|consen 364 KRPG 367 (419)
T ss_pred cccc
Confidence 7663
No 82
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.63 E-value=3.2e-07 Score=64.66 Aligned_cols=78 Identities=15% Similarity=0.281 Sum_probs=67.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhcc--CCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC----CeEEEE
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQ--FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF----EHILQV 127 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~--~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~----g~~l~V 127 (215)
+||.|.|||...|.++|.+++.. .|...-+.++.|..++-+.|||||.|.+.+.|..-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988865 367777888889889999999999999999999999999998765 455666
Q ss_pred EEeC
Q 028027 128 HLIP 131 (215)
Q Consensus 128 ~~a~ 131 (215)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=4.9e-08 Score=78.09 Aligned_cols=72 Identities=31% Similarity=0.556 Sum_probs=65.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCCC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~~ 133 (215)
..||||+||+.+.+.+|..+|..||.|..+.+.. ||+||+|.+..+|..|+.-+|+..|.|..+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 3599999999999999999999999999987642 69999999999999999999999999999999998864
No 84
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=2e-08 Score=79.59 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...+||||+|+...++|+-|.++|-+.|+|..|.|..++ .+..+ ||||.|.++.++.-|+..|||..+.+..+.|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 446899999999999999999999999999999998886 66676 9999999999999999999999999988887765
Q ss_pred CC
Q 028027 131 PP 132 (215)
Q Consensus 131 ~~ 132 (215)
..
T Consensus 85 ~G 86 (267)
T KOG4454|consen 85 CG 86 (267)
T ss_pred cC
Confidence 43
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=7.8e-08 Score=85.13 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=65.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~ 126 (215)
....++|+|-|||..+++++|+.+|+.||+|..|+. |-..+|..||+|.+..+|++|++.|++..+.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 356789999999999999999999999999999754 445579999999999999999999999999998887
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.50 E-value=5.7e-07 Score=78.72 Aligned_cols=79 Identities=24% Similarity=0.331 Sum_probs=67.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.....|.+.+|||++|+++|.+||+.|+ |.++.+.+. +|+..|-|||+|.+.++++.|++ .+...++.+-|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 4556789999999999999999999994 777666554 89999999999999999999996 4888899999999776
Q ss_pred CCC
Q 028027 131 PPE 133 (215)
Q Consensus 131 ~~~ 133 (215)
.+.
T Consensus 84 ~~~ 86 (510)
T KOG4211|consen 84 GGA 86 (510)
T ss_pred CCc
Confidence 443
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.43 E-value=2e-07 Score=82.88 Aligned_cols=90 Identities=23% Similarity=0.473 Sum_probs=81.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.....+||++||..+++..+.+++..||.+....++.+..+|.++||||.+|.+......|+..|||..++++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 45578999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCc
Q 028027 131 PPEHVHPKLW 140 (215)
Q Consensus 131 ~~~~~~~~~~ 140 (215)
.........+
T Consensus 367 ~~g~~~~~~~ 376 (500)
T KOG0120|consen 367 IVGASNANVN 376 (500)
T ss_pred hccchhcccc
Confidence 7765544443
No 88
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.36 E-value=1.8e-07 Score=82.77 Aligned_cols=85 Identities=21% Similarity=0.401 Sum_probs=78.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
+++-+.++||+-.|+..+++.+|+++|+.+|.|..|+++.|+.++.++|.|||+|.+.+.+..|| .|.|..+.|-+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 34567789999999999999999999999999999999999999999999999999999999999 78999999999999
Q ss_pred EEeCCC
Q 028027 128 HLIPPE 133 (215)
Q Consensus 128 ~~a~~~ 133 (215)
......
T Consensus 253 q~sEae 258 (549)
T KOG0147|consen 253 QLSEAE 258 (549)
T ss_pred cccHHH
Confidence 876543
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.31 E-value=6e-06 Score=71.01 Aligned_cols=78 Identities=23% Similarity=0.426 Sum_probs=69.6
Q ss_pred CcEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 53 ATVLYIGRIPH-GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 53 ~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
...|.|.||.. .+|.+.|..+|+-||.|.+|.|..++. .-|+|+|.+...|+.|+..|+|..|.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57788888866 589999999999999999999998863 479999999999999999999999999999999987
Q ss_pred CCCC
Q 028027 132 PEHV 135 (215)
Q Consensus 132 ~~~~ 135 (215)
-...
T Consensus 372 H~~v 375 (492)
T KOG1190|consen 372 HTNV 375 (492)
T ss_pred Cccc
Confidence 5443
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.24 E-value=3.5e-06 Score=73.89 Aligned_cols=78 Identities=17% Similarity=0.330 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR-LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....+|.+.+||+.||+++|.+||+..-.|.. |.++.+. .+++.|-|||+|++.+.|+.|+.. |...|+.+-|.|-.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 35678999999999999999999998765555 5566665 788999999999999999999964 77788888888865
Q ss_pred e
Q 028027 130 I 130 (215)
Q Consensus 130 a 130 (215)
+
T Consensus 179 S 179 (510)
T KOG4211|consen 179 S 179 (510)
T ss_pred h
Confidence 4
No 91
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.20 E-value=1.1e-06 Score=74.24 Aligned_cols=85 Identities=22% Similarity=0.398 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCee--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIK--------RLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~ 121 (215)
.....+|||.+||..+++.+|..+|.+||.|. .|.|.++++|+..+|-|.|.|.+...|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34567899999999999999999999999883 3678888999999999999999999999999999999999
Q ss_pred CeEEEEEEeCCCC
Q 028027 122 EHILQVHLIPPEH 134 (215)
Q Consensus 122 g~~l~V~~a~~~~ 134 (215)
|..|.|.++..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998886554
No 92
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.14 E-value=1.4e-06 Score=70.58 Aligned_cols=73 Identities=22% Similarity=0.401 Sum_probs=62.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCC--------CCcc----cEEEEEEcCHHHHHHHHHHhCCce
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKT--------GQSK----HFGFIEFNDPEVAEVVADAMHGYL 119 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~t--------g~~~----g~afV~F~~~~~a~~ai~~l~g~~ 119 (215)
....||+++||+.+....|+++|++||.|-.|.+-....+ |.+. .-|+|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5689999999999999999999999999999988765433 2222 237899999999999999999999
Q ss_pred eCCeE
Q 028027 120 LFEHI 124 (215)
Q Consensus 120 l~g~~ 124 (215)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99965
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.14 E-value=9.2e-06 Score=55.18 Aligned_cols=68 Identities=21% Similarity=0.422 Sum_probs=47.1
Q ss_pred cEEEEcCCCCCCcHHHHH----HHhccCC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 54 TVLYIGRIPHGFYEKEMQ----AFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~----~~F~~~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
+.|||.|||...+...|+ .++..|| .|..| +| +.|+|.|.+.+.|.+|.+.|+|-.+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------SG---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------eC---CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 468999999998887665 4555675 56555 22 689999999999999999999999999999999
Q ss_pred EeC
Q 028027 129 LIP 131 (215)
Q Consensus 129 ~a~ 131 (215)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 94
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.09 E-value=9.5e-06 Score=58.25 Aligned_cols=70 Identities=17% Similarity=0.367 Sum_probs=43.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc-----eeCCeEEEEE
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY-----LLFEHILQVH 128 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~-----~l~g~~l~V~ 128 (215)
+.|+|.+++..++.++|++.|++||.|..|.+.... ..|||.|.+.+.|+.|+..+... .+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 578999999999999999999999999999887653 47999999999999999876543 4445555544
Q ss_pred E
Q 028027 129 L 129 (215)
Q Consensus 129 ~ 129 (215)
+
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 95
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.06 E-value=5.2e-06 Score=69.86 Aligned_cols=85 Identities=14% Similarity=0.371 Sum_probs=75.9
Q ss_pred CCCcEEE-EcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 51 NKATVLY-IGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 51 ~~~~~l~-V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++| |++|+..+++++|+..|..+|.|..++++.+..+|...|||||.|.+...+..++.. ....+.++++.+..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 4455565 999999999999999999999999999999999999999999999999999998866 78889999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
..+....
T Consensus 261 ~~~~~~~ 267 (285)
T KOG4210|consen 261 DEPRPKS 267 (285)
T ss_pred CCCCccc
Confidence 8776544
No 96
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.98 E-value=1.8e-05 Score=66.68 Aligned_cols=79 Identities=20% Similarity=0.414 Sum_probs=61.7
Q ss_pred cEEEEcCCCCCCcHHH----H--HHHhccCCCeeEEEEeecCCC-CCccc-E-EEEEEcCHHHHHHHHHHhCCceeCCeE
Q 028027 54 TVLYIGRIPHGFYEKE----M--QAFFSQFGAIKRLRIARNKKT-GQSKH-F-GFIEFNDPEVAEVVADAMHGYLLFEHI 124 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~----L--~~~F~~~G~v~~v~i~~~~~t-g~~~g-~-afV~F~~~~~a~~ai~~l~g~~l~g~~ 124 (215)
.-+||-+||+.+..++ | .++|++||.|..|.+.+...+ ....+ + .||+|.+.++|.+||...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4589999999876655 2 589999999999877553211 11112 2 399999999999999999999999999
Q ss_pred EEEEEeCC
Q 028027 125 LQVHLIPP 132 (215)
Q Consensus 125 l~V~~a~~ 132 (215)
|+..+-..
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99988654
No 97
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.97 E-value=5.7e-06 Score=69.89 Aligned_cols=75 Identities=13% Similarity=0.243 Sum_probs=66.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCC--CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFG--AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
..+|||||-|++|.+||.+.+...| .+.++++..++.+|+++|||+|...+.......++.|....|+|..-.|-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 4689999999999999999988776 56778888899999999999999999999999999999999999765553
No 98
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.91 E-value=6.1e-05 Score=60.20 Aligned_cols=79 Identities=19% Similarity=0.436 Sum_probs=68.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC-CeEEE
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF-EHILQ 126 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~-g~~l~ 126 (215)
++..+..++|+.|||..++.+.+..+|.+|+....++++... .+.|||+|.+...+..|...+.|..|- ...+.
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~ 215 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQ 215 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEE
Confidence 445677899999999999999999999999999999988764 379999999999999999999998877 77777
Q ss_pred EEEeC
Q 028027 127 VHLIP 131 (215)
Q Consensus 127 V~~a~ 131 (215)
|.++.
T Consensus 216 i~~a~ 220 (221)
T KOG4206|consen 216 ITFAK 220 (221)
T ss_pred ecccC
Confidence 77653
No 99
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.90 E-value=4.1e-05 Score=66.02 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=64.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCe-EEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQVHL 129 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~-~l~V~~ 129 (215)
+++.++.+.|||++++|++|...|..-|-....... -++.+.+|++.+.+.+.|-.|+-.++.+.+++. .|+|++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 355789999999999999999999998865444322 334457999999999999999999999988865 899999
Q ss_pred eCC
Q 028027 130 IPP 132 (215)
Q Consensus 130 a~~ 132 (215)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 864
No 100
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.84 E-value=1.8e-05 Score=63.23 Aligned_cols=64 Identities=23% Similarity=0.433 Sum_probs=53.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~ 121 (215)
.||||.||.+.|+|++|+.+|+.|.....++|... .| -..||++|++.+.|..|+..|.|..|.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 58999999999999999999999976666665322 33 358999999999999999999987654
No 101
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.77 E-value=2.1e-05 Score=63.11 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=65.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
.+....+.++|.+++..+.+.+|...|.++|.+....+ ..+++||+|...++|..|+..|++..+.|+.|.+
T Consensus 94 ~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 94 PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred CcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 34567788999999999999999999999999855433 3469999999999999999999999999999999
Q ss_pred EEe
Q 028027 128 HLI 130 (215)
Q Consensus 128 ~~a 130 (215)
...
T Consensus 166 ~~~ 168 (216)
T KOG0106|consen 166 EKN 168 (216)
T ss_pred ccc
Confidence 543
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.75 E-value=0.00084 Score=57.55 Aligned_cols=82 Identities=18% Similarity=0.312 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcCCCCC-CcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 49 LVNKATVLYIGRIPHG-FYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
...+++.+.|-+|... ++.+.|..+|-.||.|..|.+++.+ + |-|.|++.+....++|+..||+..+.|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-P----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-c----ceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3567789999999886 6668899999999999999999886 3 68999999999999999999999999999999
Q ss_pred EEeCCCCC
Q 028027 128 HLIPPEHV 135 (215)
Q Consensus 128 ~~a~~~~~ 135 (215)
.+++..-.
T Consensus 358 ~~SkQ~~v 365 (494)
T KOG1456|consen 358 CVSKQNFV 365 (494)
T ss_pred eecccccc
Confidence 99876543
No 103
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.69 E-value=0.0001 Score=46.13 Aligned_cols=52 Identities=17% Similarity=0.402 Sum_probs=42.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVA 112 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai 112 (215)
+.|-|.|.+++..+. +...|.+||+|..+.+... ..+.||.|.+..+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 578899999877655 5558889999999887622 358999999999999885
No 104
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00015 Score=64.96 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=65.0
Q ss_pred CCCcEEEEcCCCCCCc------HHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC-Ce
Q 028027 51 NKATVLYIGRIPHGFY------EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF-EH 123 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~t------e~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~-g~ 123 (215)
.-...|+|.|+|---. ..-|..+|+.+|.|..+.++.+.. |..+||.|++|.+..+|+.|++.|||+.|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 4557899999987321 234567899999999999998864 559999999999999999999999999876 67
Q ss_pred EEEEEEeC
Q 028027 124 ILQVHLIP 131 (215)
Q Consensus 124 ~l~V~~a~ 131 (215)
++.|...+
T Consensus 135 tf~v~~f~ 142 (698)
T KOG2314|consen 135 TFFVRLFK 142 (698)
T ss_pred eEEeehhh
Confidence 77776644
No 105
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.52 E-value=0.0004 Score=63.66 Aligned_cols=76 Identities=18% Similarity=0.353 Sum_probs=66.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCe-eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAI-KRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v-~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
.+.|-+.|+|++++-+||.+||..|-.+ -+|.+-++ +.|...|-|.|.|++.+.|.+|...|++..|..+.|.+.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3588999999999999999999999655 34555555 5899999999999999999999999999999999998865
No 106
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.49 E-value=0.00067 Score=48.12 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=51.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEE-EeecC------CCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLR-IARNK------KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 123 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~-i~~~~------~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~ 123 (215)
...+.|.|-+.|+. ....+...|++||.|.+.. +.++. .......+-.|+|.++.+|.+||. .||..|+|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 34567888899998 4567788999999997764 11100 011223689999999999999995 599999885
Q ss_pred -EEEEEEeC
Q 028027 124 -ILQVHLIP 131 (215)
Q Consensus 124 -~l~V~~a~ 131 (215)
.+-|.+++
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 45566653
No 107
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.47 E-value=0.00037 Score=62.46 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=55.1
Q ss_pred HHHHhccCCCeeEEEEeec-C--CCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCCCCCC
Q 028027 70 MQAFFSQFGAIKRLRIARN-K--KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVH 136 (215)
Q Consensus 70 L~~~F~~~G~v~~v~i~~~-~--~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~~~~~ 136 (215)
++.-++.||.|..|.+++. . ...-..|-.||+|.+.++++.|+..|+|..+.|+.|...|......+
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY~ 495 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKYH 495 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHhh
Confidence 3455678999999999887 2 12334578899999999999999999999999999999998765544
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00045 Score=61.29 Aligned_cols=66 Identities=17% Similarity=0.337 Sum_probs=60.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhc-cCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFS-QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~ 114 (215)
+-++.+|||||+||.-++-.+|-.+|. -||.|..+-|-.|++-+-++|-|-|+|.+..+--+||..
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 346778999999999999999999998 599999999999988899999999999999999999864
No 109
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.44 E-value=0.00031 Score=60.25 Aligned_cols=83 Identities=18% Similarity=0.324 Sum_probs=68.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCC-ee--EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGA-IK--RLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 124 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-v~--~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~ 124 (215)
++......|.+.+||+..+-++|..||..|.. |. .|+++.+. .|+..|-|||+|.+.+.|..|+...+...+.++.
T Consensus 275 p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RY 353 (508)
T KOG1365|consen 275 PPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRY 353 (508)
T ss_pred CCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccce
Confidence 33444678999999999999999999998863 33 37777774 8999999999999999999999888888888888
Q ss_pred EEEEEeC
Q 028027 125 LQVHLIP 131 (215)
Q Consensus 125 l~V~~a~ 131 (215)
|.|--+.
T Consensus 354 iEvfp~S 360 (508)
T KOG1365|consen 354 IEVFPCS 360 (508)
T ss_pred EEEeecc
Confidence 8886553
No 110
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.44 E-value=0.00075 Score=50.86 Aligned_cols=74 Identities=18% Similarity=0.342 Sum_probs=52.1
Q ss_pred CCCcEEEEcCCC------CCCcH---HHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC
Q 028027 51 NKATVLYIGRIP------HGFYE---KEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (215)
Q Consensus 51 ~~~~~l~V~nLp------~~~te---~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~ 121 (215)
++..||.|.-+. ..+.+ .+|-+.|..||.+.-+++..+ .-+|+|.+...|-+|+ .|+|..++
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEEC
Confidence 344667676555 12332 256778899999988888654 5799999999999999 58999999
Q ss_pred CeEEEEEEeCCC
Q 028027 122 EHILQVHLIPPE 133 (215)
Q Consensus 122 g~~l~V~~a~~~ 133 (215)
|+.|.|++..|.
T Consensus 96 g~~l~i~LKtpd 107 (146)
T PF08952_consen 96 GRTLKIRLKTPD 107 (146)
T ss_dssp TEEEEEEE----
T ss_pred CEEEEEEeCCcc
Confidence 999999986553
No 111
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.28 E-value=0.0013 Score=55.85 Aligned_cols=79 Identities=10% Similarity=0.188 Sum_probs=62.2
Q ss_pred CCCcEEEEcCCCC----CCc-------HHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCce
Q 028027 51 NKATVLYIGRIPH----GFY-------EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL 119 (215)
Q Consensus 51 ~~~~~l~V~nLp~----~~t-------e~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~ 119 (215)
...++|.+.|+-. ..+ .++|++-...||.|.+|.|.-. .+.|.+-|.|.+.+.|..||..|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 4567888988743 122 2455666789999999977533 245899999999999999999999999
Q ss_pred eCCeEEEEEEeCCC
Q 028027 120 LFEHILQVHLIPPE 133 (215)
Q Consensus 120 l~g~~l~V~~a~~~ 133 (215)
++|+.|...+....
T Consensus 339 fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 339 FDGRQLTASIWDGK 352 (382)
T ss_pred ecceEEEEEEeCCc
Confidence 99999998876544
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0016 Score=57.88 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=54.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecC---CCCCccc---EEEEEEcCHHHHHHHHHHhCCceeCCe
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNK---KTGQSKH---FGFIEFNDPEVAEVVADAMHGYLLFEH 123 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~---~tg~~~g---~afV~F~~~~~a~~ai~~l~g~~l~g~ 123 (215)
..-++.||||+||++++|+.|...|..||.+ .|.++... .--.++| |+|+.|+++..+..-+..+. .++.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~---~~~~ 331 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS---EGEG 331 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh---hccc
Confidence 3567889999999999999999999999985 34555211 1113456 99999999988877665433 2444
Q ss_pred EEEEEEe
Q 028027 124 ILQVHLI 130 (215)
Q Consensus 124 ~l~V~~a 130 (215)
.+.+.++
T Consensus 332 ~~yf~vs 338 (520)
T KOG0129|consen 332 NYYFKVS 338 (520)
T ss_pred ceEEEEe
Confidence 4444443
No 113
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.18 E-value=0.00072 Score=58.12 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=55.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccC----CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQF----GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~----G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l 125 (215)
+.-.|.+.+||+++++.++.+||.+- |....|-++..+ +|+..|-|||.|..+++|+.|+.. |...|+-|.|
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 34568888999999999999999742 344566666654 899999999999999999999965 4444544433
No 114
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.11 E-value=0.00059 Score=59.33 Aligned_cols=71 Identities=15% Similarity=0.277 Sum_probs=58.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeec---CCCC--C--------cccEEEEEEcCHHHHHHHHHH
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARN---KKTG--Q--------SKHFGFIEFNDPEVAEVVADA 114 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~---~~tg--~--------~~g~afV~F~~~~~a~~ai~~ 114 (215)
.++..+++|.+-|||.+-.-+.|..+|+.+|.|..|+|+.. +.++ . .+-+|+|+|...+.|..|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34568999999999999888999999999999999999876 3222 1 245799999999999999988
Q ss_pred hCCc
Q 028027 115 MHGY 118 (215)
Q Consensus 115 l~g~ 118 (215)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 8653
No 115
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.04 E-value=0.0025 Score=49.75 Aligned_cols=73 Identities=8% Similarity=0.136 Sum_probs=61.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC--CeEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF--EHILQV 127 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~--g~~l~V 127 (215)
..+...|.|.+||++.+..+|++.+...|.|....+.+| |++.|+|...++.+-|+..|+...+. |-...+
T Consensus 112 rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yi 184 (241)
T KOG0105|consen 112 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYI 184 (241)
T ss_pred cccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeE
Confidence 345678999999999999999999999999998888777 58999999999999999999886544 444444
Q ss_pred EE
Q 028027 128 HL 129 (215)
Q Consensus 128 ~~ 129 (215)
.+
T Consensus 185 rv 186 (241)
T KOG0105|consen 185 RV 186 (241)
T ss_pred Ee
Confidence 43
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.03 E-value=0.00033 Score=65.38 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~ 132 (215)
...|+|.|.|+..|.+.++.++..+|.++++.++..+ .|+++|.|||.|.+..++..++..++...+....+.|..+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 3579999999999999999999999999999988886 899999999999999999999988888888888888888777
Q ss_pred CCCCCC
Q 028027 133 EHVHPK 138 (215)
Q Consensus 133 ~~~~~~ 138 (215)
....+.
T Consensus 815 ~~~K~k 820 (881)
T KOG0128|consen 815 ERDKKK 820 (881)
T ss_pred cccccc
Confidence 544443
No 117
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.00 E-value=0.0061 Score=41.48 Aligned_cols=55 Identities=20% Similarity=0.454 Sum_probs=42.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH 116 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~ 116 (215)
....+|+ .|..+-..||.++|+.||.| .|.++.+ .-|||.....+.|..++..++
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 3556666 99999999999999999987 5666666 279999999999999998775
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.98 E-value=0.0011 Score=62.48 Aligned_cols=78 Identities=23% Similarity=0.378 Sum_probs=67.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC--eEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE--HILQV 127 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g--~~l~V 127 (215)
....+.+++++|.+++....|...|..||.|..|.+-. | ..||+|.|.+...++.|+..|-|..|+| +.++|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 34567899999999999999999999999999876632 2 2599999999999999999999999986 67999
Q ss_pred EEeCCC
Q 028027 128 HLIPPE 133 (215)
Q Consensus 128 ~~a~~~ 133 (215)
.++.+-
T Consensus 526 dla~~~ 531 (975)
T KOG0112|consen 526 DLASPP 531 (975)
T ss_pred ccccCC
Confidence 988653
No 119
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.79 E-value=0.013 Score=50.36 Aligned_cols=79 Identities=19% Similarity=0.301 Sum_probs=63.0
Q ss_pred CCcEEEEc--CCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC-C-eEEEE
Q 028027 52 KATVLYIG--RIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF-E-HILQV 127 (215)
Q Consensus 52 ~~~~l~V~--nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~-g-~~l~V 127 (215)
....|.+. |--+.+|-+.|..+....|.|.+|.|.+. +| --|.|+|++.+.|++|...|||..|- | ..|+|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 34455544 44456899999999999999999988765 44 36999999999999999999998654 3 67899
Q ss_pred EEeCCCCC
Q 028027 128 HLIPPEHV 135 (215)
Q Consensus 128 ~~a~~~~~ 135 (215)
++|+|.+.
T Consensus 194 eyAkP~rl 201 (494)
T KOG1456|consen 194 EYAKPTRL 201 (494)
T ss_pred EecCccee
Confidence 99988653
No 120
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.74 E-value=0.0085 Score=38.58 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=45.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccC---CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQF---GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~---G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l 115 (215)
+..|+|.|+.. ++.++|..+|..| .....|.++.|. -|-|.|.+.+.|.+||..|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 46799999965 7889999999988 235789999884 6889999999999999754
No 121
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.71 E-value=0.00076 Score=55.01 Aligned_cols=63 Identities=16% Similarity=0.269 Sum_probs=51.5
Q ss_pred HHHHHhc-cCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 028027 69 EMQAFFS-QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (215)
Q Consensus 69 ~L~~~F~-~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~ 132 (215)
+|...|+ +||+|..+.+..+. .-...|-+||.|...++|++|+..||+-.+.|++|...+..-
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 3333444 89999998777664 344578999999999999999999999999999999988643
No 122
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.62 E-value=0.0017 Score=52.98 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=65.1
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHH
Q 028027 28 GAADFLPLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEV 107 (215)
Q Consensus 28 ~~~d~~~~~g~p~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~ 107 (215)
..+|+...-|++.++.-. .. ..|||.||+..++-+.+...|+.||+|....++.|. .+++.+-++|.|...-.
T Consensus 12 ~eLd~~~~~~~~lr~rfa-----~~-a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~ 84 (275)
T KOG0115|consen 12 RELDGRFPKGRSLRVRFA-----MH-AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPN 84 (275)
T ss_pred HhcCCCCCCCCceEEEee-----cc-ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchh
Confidence 455655555555554332 22 679999999999999999999999999887777774 78888999999999999
Q ss_pred HHHHHHHhC
Q 028027 108 AEVVADAMH 116 (215)
Q Consensus 108 a~~ai~~l~ 116 (215)
+..|+..++
T Consensus 85 a~~a~rr~~ 93 (275)
T KOG0115|consen 85 ARKAARRCR 93 (275)
T ss_pred HHHHHHHhc
Confidence 999987763
No 123
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.62 E-value=0.0014 Score=56.96 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=60.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc-eeCCeEEEEEEeCC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY-LLFEHILQVHLIPP 132 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~-~l~g~~l~V~~a~~ 132 (215)
..+|++||.+.++..+|+.+|...-.-.+-.++.. .||+||.+.+...|..|++.++|. .+.|.++.|..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 35899999999999999999976421111122222 279999999999999999999996 69999999998776
Q ss_pred CCCC
Q 028027 133 EHVH 136 (215)
Q Consensus 133 ~~~~ 136 (215)
+..+
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 5443
No 124
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.58 E-value=0.0008 Score=56.89 Aligned_cols=79 Identities=18% Similarity=0.422 Sum_probs=61.6
Q ss_pred cEEEEcCCCCCCcHHHH---HHHhccCCCeeEEEEeecC----CCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 028027 54 TVLYIGRIPHGFYEKEM---QAFFSQFGAIKRLRIARNK----KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L---~~~F~~~G~v~~v~i~~~~----~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~ 126 (215)
.-+||-+|+.....+.+ .++|++||.|..|.+..+. ..+.+ .-++|+|...++|..||...+|+.++|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 44788888877655444 3689999999999887765 12222 2389999999999999999999999999988
Q ss_pred EEEeCCC
Q 028027 127 VHLIPPE 133 (215)
Q Consensus 127 V~~a~~~ 133 (215)
..+..+.
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7776554
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.46 E-value=0.0055 Score=56.49 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=67.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR-LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
......|||..||..+++.++-.+|...-.|++ |.|.+.+ ++..++.|||.|..++++..|+..-+.+.++.+.|+|+
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 345678999999999999999999988777766 7777776 88999999999999888888876666778888899987
Q ss_pred Ee
Q 028027 129 LI 130 (215)
Q Consensus 129 ~a 130 (215)
-.
T Consensus 510 si 511 (944)
T KOG4307|consen 510 SI 511 (944)
T ss_pred ch
Confidence 54
No 126
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.45 E-value=0.0055 Score=52.93 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=60.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCC---CCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKK---TGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~---tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
...|.|.||.+.++.++++.+|...|.|..+.|+-+.. -......|||.|.+...+..|- .|.++.+-++-|.|..
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 45899999999999999999999999999998876421 2334568999999999888876 5666666666666554
Q ss_pred e
Q 028027 130 I 130 (215)
Q Consensus 130 a 130 (215)
+
T Consensus 86 ~ 86 (479)
T KOG4676|consen 86 Y 86 (479)
T ss_pred c
Confidence 3
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.40 E-value=0.00019 Score=66.93 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=59.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~ 121 (215)
.++||+||+..+.+.+|...|..+|.+..+++.-...+++.+|+||+.|...+.+.+|+...+++.++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 57899999999999999999999998888877655568999999999999999999999765555554
No 128
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.30 E-value=0.015 Score=48.46 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=51.4
Q ss_pred HHHHHHhccCCCeeEEEEeecCCCCCcc-cEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 68 KEMQAFFSQFGAIKRLRIARNKKTGQSK-HFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 68 ~~L~~~F~~~G~v~~v~i~~~~~tg~~~-g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
+++.+-+.+||.|..|.|...+...... ---||+|...++|..|+-.|||..|+|+.+...|..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4566778899999999887765333222 236999999999999999999999999999988754
No 129
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.22 E-value=0.006 Score=55.27 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=62.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhc-cCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee---CCeEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFS-QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL---FEHIL 125 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l---~g~~l 125 (215)
...+..|||.||-.-+|..+|+.+++ .+|.|... || |+ .+..|||.|.+.++|.....+|||..+ +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 35678899999999999999999999 56777776 33 22 346899999999999999999999765 46778
Q ss_pred EEEEeCC
Q 028027 126 QVHLIPP 132 (215)
Q Consensus 126 ~V~~a~~ 132 (215)
.+.|...
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 8887643
No 130
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.16 E-value=0.011 Score=46.42 Aligned_cols=82 Identities=21% Similarity=0.245 Sum_probs=50.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhcc-CCCe---eEEEEeecCC-C-CCcccEEEEEEcCHHHHHHHHHHhCCceeCC--
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQ-FGAI---KRLRIARNKK-T-GQSKHFGFIEFNDPEVAEVVADAMHGYLLFE-- 122 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~v---~~v~i~~~~~-t-g~~~g~afV~F~~~~~a~~ai~~l~g~~l~g-- 122 (215)
.....|.|.+||+++|++++.+.++. ++.- ..+.-..... . ...-.-|||.|.+.+++...+..++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 44568999999999999999887776 6654 3333222211 1 1223569999999999999999999976542
Q ss_pred ---eEEEEEEeCC
Q 028027 123 ---HILQVHLIPP 132 (215)
Q Consensus 123 ---~~l~V~~a~~ 132 (215)
....|++|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 3446666654
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.09 E-value=0.0018 Score=61.01 Aligned_cols=82 Identities=13% Similarity=0.259 Sum_probs=68.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
.....++||+|||+..+++.+|+..|..+|.|..|.|-+.+ -+....||||.|.+...+..|+..+.+..|..-.+.+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34567899999999999999999999999999999887653 44455799999999999999998999988776666666
Q ss_pred EeC
Q 028027 129 LIP 131 (215)
Q Consensus 129 ~a~ 131 (215)
+..
T Consensus 447 lG~ 449 (975)
T KOG0112|consen 447 LGQ 449 (975)
T ss_pred ccc
Confidence 654
No 132
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.02 E-value=0.12 Score=37.27 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=48.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccC-CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQF-GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE 122 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~-G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g 122 (215)
...+.+...|+.++-++|..+.+.+ ..|..++|+++. ..++-.+++.|.+...|..-...+||..++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3344454555555556666555554 467888999873 3456678999999999999999999987663
No 133
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.00 E-value=0.032 Score=41.87 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=54.7
Q ss_pred CCCCcEEEEcCCCCCCcH-H---HHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 028027 50 VNKATVLYIGRIPHGFYE-K---EMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te-~---~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l 125 (215)
+++-.||.|.=|..++.. + .+...++.||+|.+|.+.- +.-|.|.|.+..+|-.|+.++.. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 456678888765555432 3 4445577899999996632 34799999999999999988766 5678888
Q ss_pred EEEEeC
Q 028027 126 QVHLIP 131 (215)
Q Consensus 126 ~V~~a~ 131 (215)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888753
No 134
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.10 E-value=0.14 Score=43.11 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=54.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeE-EEEEEeC
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI-LQVHLIP 131 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~-l~V~~a~ 131 (215)
..-|-|-++|+.- -..|...|++||.|...... ..-.+-+|.|.+...|++||. .||..|+|.. |-|.-+.
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 4567777888864 45677899999999876443 223699999999999999995 5999998854 4555544
Q ss_pred CC
Q 028027 132 PE 133 (215)
Q Consensus 132 ~~ 133 (215)
.+
T Consensus 269 Dk 270 (350)
T KOG4285|consen 269 DK 270 (350)
T ss_pred CH
Confidence 43
No 135
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.02 E-value=0.021 Score=52.39 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=62.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
++.++..+|||+|+...+..+-+..++..||.|.++.... |||..|........|+..++-..++|..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 4556778999999999999999999999999987764322 9999999999999999999988999888776
Q ss_pred EE
Q 028027 128 HL 129 (215)
Q Consensus 128 ~~ 129 (215)
..
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 55
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.42 E-value=0.14 Score=40.38 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=45.8
Q ss_pred cHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CceeCCeEEEEEEeCCC
Q 028027 66 YEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH--GYLLFEHILQVHLIPPE 133 (215)
Q Consensus 66 te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~--g~~l~g~~l~V~~a~~~ 133 (215)
....|+.+|..|+.+..+.+...- +-..|.|.+.+.|..|...|+ +..+.|..++|-++.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 347899999999998888776652 467899999999999999999 99999999999988543
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.39 E-value=0.3 Score=32.41 Aligned_cols=67 Identities=25% Similarity=0.386 Sum_probs=38.4
Q ss_pred EEEEc-CCCCCCcHHHHHHHhccCC-----CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 55 VLYIG-RIPHGFYEKEMQAFFSQFG-----AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 55 ~l~V~-nLp~~~te~~L~~~F~~~G-----~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
++||. +=-..++..+|..++...+ .|-.|.+..+ |+||+-... .|..++..|++..+.|+.|.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 34443 2334578888888887664 3456666543 899987754 7888999999999999999998
Q ss_pred Ee
Q 028027 129 LI 130 (215)
Q Consensus 129 ~a 130 (215)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 138
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.14 E-value=0.032 Score=49.38 Aligned_cols=76 Identities=20% Similarity=0.385 Sum_probs=60.1
Q ss_pred CCcEEEEcCCCCCC-cHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 52 KATVLYIGRIPHGF-YEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 52 ~~~~l~V~nLp~~~-te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
+.+.|-+.-+|+.. +-++|...|.+||.|..|.+-... -.|.|+|.+..+|-.|. ..++..|+++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 44555555566654 458899999999999999886552 36899999999997776 46899999999999998
Q ss_pred CCCC
Q 028027 131 PPEH 134 (215)
Q Consensus 131 ~~~~ 134 (215)
.+..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 8744
No 139
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=91.94 E-value=0.13 Score=43.39 Aligned_cols=82 Identities=15% Similarity=0.083 Sum_probs=66.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...+++|++++.+.+.+.++..++..+|.+....+........++|++++.|...+.+..|+...-.+.+.+..+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45788999999999999988888999998877777766668899999999999999999999654445677766665554
Q ss_pred CC
Q 028027 131 PP 132 (215)
Q Consensus 131 ~~ 132 (215)
..
T Consensus 166 ~~ 167 (285)
T KOG4210|consen 166 TR 167 (285)
T ss_pred cc
Confidence 43
No 140
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.86 E-value=0.7 Score=41.00 Aligned_cols=68 Identities=22% Similarity=0.366 Sum_probs=57.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccC-CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQF-GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE 122 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~-G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g 122 (215)
++.|.|-.+|..++-.||-.|...| -.|.+++++++. -..+=..+|.|.+..+|......+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7889999999999999999998765 468999999963 2334467899999999999999999987764
No 141
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.26 E-value=0.43 Score=43.37 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=59.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhcc--CCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--ceeCCeEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQ--FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHG--YLLFEHILQ 126 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~--~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g--~~l~g~~l~ 126 (215)
...+.|.+.-||.++-.++++.+|.. |-.+.+|.+..+. -=||+|++..+|+.|...|.. ..|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 45578999999999999999999975 7788899887663 359999999999999987765 467788776
Q ss_pred EEE
Q 028027 127 VHL 129 (215)
Q Consensus 127 V~~ 129 (215)
.++
T Consensus 246 ARI 248 (684)
T KOG2591|consen 246 ARI 248 (684)
T ss_pred hhh
Confidence 554
No 142
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=91.02 E-value=0.055 Score=43.51 Aligned_cols=66 Identities=26% Similarity=0.470 Sum_probs=54.4
Q ss_pred cEEEEcC----CCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 028027 54 TVLYIGR----IPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL 120 (215)
Q Consensus 54 ~~l~V~n----Lp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l 120 (215)
.+++.|+ |...++++.+...|++-|++..+++.++. .|+++.++|+++.-....-.++....+..+
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 4455666 77789999999999999999999999886 689999999999888777778877766543
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=90.65 E-value=0.51 Score=42.77 Aligned_cols=66 Identities=24% Similarity=0.283 Sum_probs=46.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhc-cCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCce
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFS-QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL 119 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~ 119 (215)
+++.|.|+|...|-..|...-. ..|.-.-+.++.|-.+....|||||.|.+.+.+..+.+++||..
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~ 455 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKK 455 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCc
Confidence 4455555555555444444322 24555666777776566778999999999999999999999974
No 144
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.72 E-value=0.22 Score=47.27 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=58.6
Q ss_pred cCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCce--eCCeEEEEEEeCCCCC
Q 028027 59 GRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL--LFEHILQVHLIPPEHV 135 (215)
Q Consensus 59 ~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~--l~g~~l~V~~a~~~~~ 135 (215)
.|.+-..+...|-.+|+.||.|.+++..++- ..|.|.|.+.+.|-.|++++.|.. .-|-+.+|.++++-+.
T Consensus 304 ~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 304 ENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 3344467778889999999999999887774 489999999999999999999975 4488899999876543
No 145
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=89.17 E-value=0.38 Score=40.16 Aligned_cols=70 Identities=23% Similarity=0.411 Sum_probs=45.2
Q ss_pred CCCCCcEEEEcCCCCC------------CcHHHHHHHhccCCCeeEEEEeec-----CCCCCc-----ccEEE-------
Q 028027 49 LVNKATVLYIGRIPHG------------FYEKEMQAFFSQFGAIKRLRIARN-----KKTGQS-----KHFGF------- 99 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~------------~te~~L~~~F~~~G~v~~v~i~~~-----~~tg~~-----~g~af------- 99 (215)
|...+.|||+.+||-. -+++.|+..|..||.|..|.|+.- .-+|+. .||+|
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffe 224 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFE 224 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHH
Confidence 3455678999988753 467889999999999998877532 124443 33433
Q ss_pred --EEEcCHHHHHHHHHHhCCc
Q 028027 100 --IEFNDPEVAEVVADAMHGY 118 (215)
Q Consensus 100 --V~F~~~~~a~~ai~~l~g~ 118 (215)
|.|-.......|+..|.|.
T Consensus 225 ayvqfmeykgfa~amdalr~~ 245 (445)
T KOG2891|consen 225 AYVQFMEYKGFAQAMDALRGM 245 (445)
T ss_pred HHHHHHHHHhHHHHHHHHhcc
Confidence 3444444455667777664
No 146
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.66 E-value=1.9 Score=39.59 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=61.5
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhccC----CCeeEEEEeecC----------CCCC---------------------
Q 028027 50 VNKATVLYIGRIPHG-FYEKEMQAFFSQF----GAIKRLRIARNK----------KTGQ--------------------- 93 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~v~~v~i~~~~----------~tg~--------------------- 93 (215)
....++|-|-|+.|. +...+|.-+|..| |.|.+|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456788999999996 7778999888866 588888775431 1222
Q ss_pred ----------------cccEEEEEEcCHHHHHHHHHHhCCceeCC--eEEEEEEeC
Q 028027 94 ----------------SKHFGFIEFNDPEVAEVVADAMHGYLLFE--HILQVHLIP 131 (215)
Q Consensus 94 ----------------~~g~afV~F~~~~~a~~ai~~l~g~~l~g--~~l~V~~a~ 131 (215)
.-=||.|+|.+...|..+...++|..+.. ..|-++|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 01279999999999999999999998875 455555543
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=84.96 E-value=0.028 Score=49.23 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=64.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEE-eecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRI-ARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i-~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
...++.+-|.|+|+....+.|..++.+||.|..|.. ..+.+| ...-|+|...+.+..||..++|..+....+.|.
T Consensus 77 kqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 77 KQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred HHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 345667999999999999999999999999998854 334332 234478889999999999999999999888888
Q ss_pred EeCC
Q 028027 129 LIPP 132 (215)
Q Consensus 129 ~a~~ 132 (215)
|...
T Consensus 153 YiPd 156 (584)
T KOG2193|consen 153 YIPD 156 (584)
T ss_pred cCch
Confidence 7543
No 148
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=83.84 E-value=9.2 Score=24.86 Aligned_cols=55 Identities=29% Similarity=0.437 Sum_probs=42.0
Q ss_pred CCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 64 GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 64 ~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
.++-.+++..+..|+- .. |..++ || =||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3567899999999863 33 33443 32 389999999999999999999888877654
No 149
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.53 E-value=6.1 Score=34.80 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=47.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCC-eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGA-IKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~ 113 (215)
.-.+.|-|.++|.....+||...|..||. --.|.|+.+. .+|-.|.+...|..||.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 34578999999999999999999999974 3567787774 89999999999999984
No 150
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=69.16 E-value=4 Score=31.99 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=52.9
Q ss_pred CcEEEEcCCCCCCcH-----HHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCe-EEE
Q 028027 53 ATVLYIGRIPHGFYE-----KEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQ 126 (215)
Q Consensus 53 ~~~l~V~nLp~~~te-----~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~-~l~ 126 (215)
.+++++.+|+..+.. .....+|.+|.+....++.+. .+...|.|.+.+.|..|.-.++++.|.|. .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 456777777765433 233566777766655555544 25667889999999999999999999988 777
Q ss_pred EEEeCCC
Q 028027 127 VHLIPPE 133 (215)
Q Consensus 127 V~~a~~~ 133 (215)
+-++.+.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 7666554
No 151
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=67.53 E-value=6.7 Score=28.49 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=30.6
Q ss_pred cEEEEcCCCCC---------CcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcC-HHHHHHHHH
Q 028027 54 TVLYIGRIPHG---------FYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFND-PEVAEVVAD 113 (215)
Q Consensus 54 ~~l~V~nLp~~---------~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~-~~~a~~ai~ 113 (215)
.++.|-|++.. .+.+.|.+.|+.|..+. +..+.+. ..+.|+++|.|.+ ......|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 34566666443 35578999999998864 5555554 3578999999984 445555653
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=67.07 E-value=1.2 Score=38.92 Aligned_cols=63 Identities=11% Similarity=-0.001 Sum_probs=50.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~ 121 (215)
++++|++|+..+...++-++|..+|.|...++.. |....+|-|.|........|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 7899999999999999999999999998877643 3334577799998888888885 4665554
No 153
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=65.27 E-value=25 Score=29.78 Aligned_cols=47 Identities=9% Similarity=0.117 Sum_probs=35.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCe-eEEEEeecCCCCCcccEEEEEEcCH
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAI-KRLRIARNKKTGQSKHFGFIEFNDP 105 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v-~~v~i~~~~~tg~~~g~afV~F~~~ 105 (215)
.+-||++|||.++.-.||...+...|-+ .++.|.- +.|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCc
Confidence 3569999999999999999999876643 4444422 357899999764
No 154
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=63.56 E-value=10 Score=24.83 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=42.1
Q ss_pred HHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 68 KEMQAFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 68 ~~L~~~F~~~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
..|.+-|...| .+..++-+..+.++.+...-||+.....+... .|+-..|+|.++.|+-.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 35777787777 67888888877677777788888775433222 45566788988888753
No 155
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=61.63 E-value=1.3 Score=40.43 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=55.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l 125 (215)
...++||+.|++++++-++|..++..+-.+..+.+...........+++|+|.-.-....|+-+||+..+....+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 345789999999999999999999988666666554332222344678999997777777888888876655443
No 156
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=61.14 E-value=20 Score=23.33 Aligned_cols=61 Identities=11% Similarity=0.180 Sum_probs=42.1
Q ss_pred HHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 68 KEMQAFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 68 ~~L~~~F~~~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
++|.+.|...| .|..+.-+..+.++.....-||+.....+.. +.++=..|+|..|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCC
Confidence 45667777666 6778877777667777788888887654422 3445567888888887643
No 157
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=59.87 E-value=12 Score=29.72 Aligned_cols=62 Identities=24% Similarity=0.344 Sum_probs=42.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHH
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVV 111 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~a 111 (215)
......+++++++..++...+...|..+|.+....+...........+.++.+.....+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALES 283 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhh
Confidence 35667899999999999999999999999997776665543333444444444433333333
No 158
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=59.19 E-value=23 Score=22.74 Aligned_cols=18 Identities=44% Similarity=0.766 Sum_probs=15.2
Q ss_pred HHHHHHhccCCCeeEEEE
Q 028027 68 KEMQAFFSQFGAIKRLRI 85 (215)
Q Consensus 68 ~~L~~~F~~~G~v~~v~i 85 (215)
.+|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999977654
No 159
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=57.36 E-value=23 Score=30.02 Aligned_cols=84 Identities=11% Similarity=0.182 Sum_probs=59.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecC-------CCCCcccEEEEEEcCHHHHHHH----HHHhC
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNK-------KTGQSKHFGFIEFNDPEVAEVV----ADAMH 116 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-------~tg~~~g~afV~F~~~~~a~~a----i~~l~ 116 (215)
.++-..+.|.+.|+..+++-..+-.-|..||+|++|.++.+. ..........+.|-+.+.|-.. ++.|.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 344566789999999999888888889999999999998764 1123345678889888776542 22233
Q ss_pred C--ceeCCeEEEEEEeC
Q 028027 117 G--YLLFEHILQVHLIP 131 (215)
Q Consensus 117 g--~~l~g~~l~V~~a~ 131 (215)
. ..+....|.|.+..
T Consensus 90 EfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHhcCCcceeEEEEE
Confidence 2 24667778777654
No 160
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=49.33 E-value=27 Score=30.63 Aligned_cols=68 Identities=18% Similarity=0.383 Sum_probs=46.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCC-eeEEEEeecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGA-IKRLRIARNKKT--GQSKHFGFIEFNDPEVAEVVADAMHGYLL 120 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~~~~~t--g~~~g~afV~F~~~~~a~~ai~~l~g~~l 120 (215)
...|.|.+||+..++.++.+-...|-. |....+...... ..-.+.+||.|...++...-...++|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 356889999999999999887776532 222222211101 11246789999999998888888999764
No 161
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.56 E-value=2.8 Score=37.25 Aligned_cols=78 Identities=6% Similarity=-0.116 Sum_probs=57.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~ 132 (215)
...|+..+|...++.++.-.|..||.|..+.+.+--..|-..-.+||.-.. ..+..+|.-+.-..+.|..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 345777889999999999999999999988776654455566677776553 456666666666667777777776643
No 162
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.12 E-value=77 Score=21.59 Aligned_cols=56 Identities=7% Similarity=0.134 Sum_probs=39.9
Q ss_pred EEEcCCCCCCcHHHHHHHhcc-CC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 028027 56 LYIGRIPHGFYEKEMQAFFSQ-FG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114 (215)
Q Consensus 56 l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~ 114 (215)
.|+--++...+..+|+..++. || .|.+|....-+ . ..-=|||++.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHh
Confidence 445557888999999999887 66 56777665543 2 223599999988888776544
No 163
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=46.21 E-value=87 Score=20.94 Aligned_cols=56 Identities=7% Similarity=0.145 Sum_probs=39.5
Q ss_pred EEEcCCCCCCcHHHHHHHhcc-CC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 028027 56 LYIGRIPHGFYEKEMQAFFSQ-FG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114 (215)
Q Consensus 56 l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~ 114 (215)
-|+-.++...+..+|+..++. || .|..|..+.-+ . ..-=|||++...+.|......
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHh
Confidence 456668899999999999887 55 56666655443 2 223589999888777766544
No 164
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=43.34 E-value=19 Score=29.50 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=28.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRL 83 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v 83 (215)
.....++|+-|+|..++++.|..+.+++|-+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3556789999999999999999999999865444
No 165
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=41.27 E-value=58 Score=22.32 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=30.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEc
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFN 103 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~ 103 (215)
.-||||+++..+-+.-...+....+.-.-+-+..+ .. ..||+|-++-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~--~n-eqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD--NN-EQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc--CC-CCCEEEEEeC
Confidence 45999999998887766555554444333333333 22 6789998773
No 166
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=39.27 E-value=21 Score=24.58 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHh
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFF 74 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F 74 (215)
....++|.|.|||....+++|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 4677899999999999999998553
No 167
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=39.14 E-value=43 Score=28.36 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=24.5
Q ss_pred EEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 028027 98 GFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (215)
Q Consensus 98 afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~ 132 (215)
|||+|.+..+|+.|++.+.... +..+.+..|.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 7999999999999998655433 34556766644
No 168
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=35.24 E-value=1.4e+02 Score=26.69 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=26.9
Q ss_pred EEEEEEcCHHHHHHHHHHhCCceeCC--eEEEEEEe
Q 028027 97 FGFIEFNDPEVAEVVADAMHGYLLFE--HILQVHLI 130 (215)
Q Consensus 97 ~afV~F~~~~~a~~ai~~l~g~~l~g--~~l~V~~a 130 (215)
||.|.+.+...+......++|..+.. ..+-+++.
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 78999999999999999999987764 34444444
No 169
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=34.37 E-value=72 Score=22.43 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=29.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCH
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDP 105 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~ 105 (215)
.-||||+++..+-+.-...+-+.++.-.-+-+..+ + ...||+|-++...
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~--~-~eqG~~~~t~G~~ 76 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT--N-TESGFEFQTFGEN 76 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC--C-CCCCcEEEecCCC
Confidence 45999999988776655555454544222323222 2 3348999887643
No 170
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=31.87 E-value=23 Score=31.25 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=48.2
Q ss_pred CcEEEEcCCCCCCcHH--------HHHHHhcc--CCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 028027 53 ATVLYIGRIPHGFYEK--------EMQAFFSQ--FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVA 112 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~--------~L~~~F~~--~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai 112 (215)
.+.+|+.+.....+.+ ++...|.. .+++..+..-++.....++|..|++|.....+++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 4567887777665444 88999988 678888888887667788899999999999999876
No 171
>PF15082 DUF4549: Domain of unknown function (DUF4549)
Probab=30.94 E-value=1.3e+02 Score=22.48 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCccccCCCCCCccccc
Q 028027 166 LEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIVGNVMPAPKKIKF 212 (215)
Q Consensus 166 ~~e~~~~~~~~~~~~~~~~~kl~~~gi~~~~~~~~~~~~~~~~~~~~ 212 (215)
-+....+.+.++++..+++..+++.|+...-+.-.-.--+.|+.++|
T Consensus 9 serv~~lEkeLa~~L~eLK~eiEE~~~l~g~~~r~~SSv~~pKd~~~ 55 (144)
T PF15082_consen 9 SERVQQLEKELAKELYELKNEIEENGMLQGSANRVYSSVQLPKDVSY 55 (144)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccCCcccHHH
Confidence 34556677778888888999999999876544443333456777765
No 172
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=28.59 E-value=71 Score=26.66 Aligned_cols=36 Identities=6% Similarity=0.070 Sum_probs=26.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeec
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARN 88 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~ 88 (215)
.....|+|||++++..-|..++...-.+....++..
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 345779999999999999999877655545555443
No 173
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=28.44 E-value=1.7e+02 Score=21.42 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=26.9
Q ss_pred CCcHHHHHHHhcc-CC----CeeEEEEeecCCCCCcccEEEEEEcCHHHHH
Q 028027 64 GFYEKEMQAFFSQ-FG----AIKRLRIARNKKTGQSKHFGFIEFNDPEVAE 109 (215)
Q Consensus 64 ~~te~~L~~~F~~-~G----~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~ 109 (215)
.++.++|++-++. |- .|.-..+-..-.+|++.|||.| |.+.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 4777888877765 32 2222233334457788899987 56555543
No 174
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=28.41 E-value=2.7e+02 Score=25.47 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=40.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhc----cCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFS----QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH 116 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~----~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~ 116 (215)
+..+.++.-....+..+|..+|. .+|.|+.+.+...+ ........++.|.+.++|..++..+.
T Consensus 189 G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p-~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 189 GEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLP-KPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEc-CCcceEEEEEECCCHHHHHHHHHHHH
Confidence 44455543222233456666664 57889988776654 33445677889999999988887654
No 175
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.15 E-value=1.1e+02 Score=27.87 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=43.0
Q ss_pred EEcCCCCCCcH---HHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 028027 57 YIGRIPHGFYE---KEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (215)
Q Consensus 57 ~V~nLp~~~te---~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l 125 (215)
+||||+.-... ..+..+-.+||+|-.+++-.- -.|...+.+.|+.|+.. ++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 58888764333 455555568999998877332 37788999999999965 7888888775
No 176
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=25.52 E-value=48 Score=26.12 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=36.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhcc-CCCeeEEEEeecCCCC--CcccEEEEEEcCHHHHHHHHHH
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQ-FGAIKRLRIARNKKTG--QSKHFGFIEFNDPEVAEVVADA 114 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~v~~v~i~~~~~tg--~~~g~afV~F~~~~~a~~ai~~ 114 (215)
..+++|.. .|++.|.++..- -|.+..+.+-+.. .+ ..+|--||+|.+.+.|.++++.
T Consensus 110 ~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 110 KERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 34567665 445444444321 1777777665542 33 5678899999999999988764
No 177
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=24.61 E-value=2.4e+02 Score=19.45 Aligned_cols=49 Identities=8% Similarity=0.192 Sum_probs=29.9
Q ss_pred EEEEcCCCCCCcHHHHH---HHhccCCCeeEEEE--eecCCCCCcccEEEEEEc
Q 028027 55 VLYIGRIPHGFYEKEMQ---AFFSQFGAIKRLRI--ARNKKTGQSKHFGFIEFN 103 (215)
Q Consensus 55 ~l~V~nLp~~~te~~L~---~~F~~~G~v~~v~i--~~~~~tg~~~g~afV~F~ 103 (215)
..|+.+||.++.+.++. ..|..++.-..|.. ......+.+.|++.+-+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 46899999998887664 55666664444433 122345667777776654
No 178
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=23.53 E-value=87 Score=29.60 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=55.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~ 126 (215)
.+||+-+-...-+...+...+..++.+....++.....+...+-++++|.....+..|. .|.+..+....+.
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~k 583 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLK 583 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-cccccccccccee
Confidence 38888888777788888888888999988888877778888889999999988876664 4566555544443
No 179
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.83 E-value=1.3e+02 Score=19.49 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=19.8
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCcee
Q 028027 96 HFGFIEFNDPEVAEVVADAMHGYLL 120 (215)
Q Consensus 96 g~afV~F~~~~~a~~ai~~l~g~~l 120 (215)
.+.+|.|.+...|-.|-+.|...-+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 3789999999999988877665444
No 180
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=22.21 E-value=82 Score=25.94 Aligned_cols=29 Identities=17% Similarity=0.526 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhc--cCCCe
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFS--QFGAI 80 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~--~~G~v 80 (215)
....++|+|||+.++..-|..++. .||.+
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred CCceEEEEEecccchHHHHHHHhhccccccc
Confidence 356789999999999999998886 34543
No 181
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=20.18 E-value=3.2e+02 Score=19.19 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=25.1
Q ss_pred CCcHHHHHHHhcc-CCCeeEEEEeec----CCCCCcccEEEEEEcCHHHHHH
Q 028027 64 GFYEKEMQAFFSQ-FGAIKRLRIARN----KKTGQSKHFGFIEFNDPEVAEV 110 (215)
Q Consensus 64 ~~te~~L~~~F~~-~G~v~~v~i~~~----~~tg~~~g~afV~F~~~~~a~~ 110 (215)
+.+..+|++-+.. |+.=.+..++.. -..|.+.|||.| |.+.+.|..
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 5667788776654 553223322222 234566777776 566666544
Done!