Query 028027
Match_columns 215
No_of_seqs 316 out of 1887
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 07:49:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 5.1E-23 1.8E-27 145.9 11.8 83 50-132 16-98 (99)
2 2lxi_A RNA-binding protein 10; 99.9 1.1E-22 3.8E-27 141.9 6.8 86 53-138 1-88 (91)
3 3s8s_A Histone-lysine N-methyl 99.9 2.1E-21 7E-26 140.2 12.4 83 51-133 4-86 (110)
4 3bs9_A Nucleolysin TIA-1 isofo 99.9 3E-21 1E-25 132.8 11.5 83 51-133 4-86 (87)
5 2dgo_A Cytotoxic granule-assoc 99.9 1.4E-20 4.7E-25 136.3 15.2 90 49-138 11-100 (115)
6 3md1_A Nuclear and cytoplasmic 99.9 6.5E-21 2.2E-25 130.0 12.2 82 53-134 1-82 (83)
7 2dgs_A DAZ-associated protein 99.9 1.1E-20 3.7E-25 133.3 13.2 87 50-137 7-93 (99)
8 2dnz_A Probable RNA-binding pr 99.9 1.3E-20 4.5E-25 131.8 12.8 86 51-136 3-88 (95)
9 2do4_A Squamous cell carcinoma 99.8 2.2E-20 7.6E-25 131.9 13.9 84 51-135 15-98 (100)
10 2cq0_A Eukaryotic translation 99.8 1.3E-20 4.6E-25 133.8 12.7 87 50-136 12-98 (103)
11 2dnm_A SRP46 splicing factor; 99.8 7.6E-21 2.6E-25 135.1 11.4 88 49-136 9-96 (103)
12 2lkz_A RNA-binding protein 5; 99.8 2.9E-21 1E-25 135.8 9.1 82 51-132 7-94 (95)
13 1x5u_A Splicing factor 3B subu 99.8 1.3E-20 4.4E-25 134.2 12.4 87 50-136 12-98 (105)
14 1whw_A Hypothetical protein ri 99.8 1.7E-20 5.8E-25 132.2 12.7 86 51-136 6-91 (99)
15 3mdf_A Peptidyl-prolyl CIS-tra 99.8 8.7E-21 3E-25 129.9 10.7 81 51-131 5-85 (85)
16 2cpz_A CUG triplet repeat RNA- 99.8 1.4E-20 4.9E-25 136.3 12.2 87 50-136 22-108 (115)
17 2x1f_A MRNA 3'-END-processing 99.8 1.2E-20 4.2E-25 132.4 11.4 84 52-135 1-84 (96)
18 1x5t_A Splicing factor 3B subu 99.8 1E-20 3.5E-25 132.6 10.8 86 51-136 3-89 (96)
19 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.7E-20 5.7E-25 133.0 11.4 87 51-137 10-96 (102)
20 2e5h_A Zinc finger CCHC-type a 99.8 2.2E-20 7.5E-25 130.4 11.7 82 50-131 13-94 (94)
21 4f25_A Polyadenylate-binding p 99.8 1.5E-20 5.2E-25 136.5 11.3 83 52-136 4-86 (115)
22 2jrs_A RNA-binding protein 39; 99.8 3.3E-20 1.1E-24 133.3 12.9 85 50-134 23-107 (108)
23 2cqc_A Arginine/serine-rich sp 99.8 2.1E-20 7E-25 130.7 11.4 83 50-132 12-94 (95)
24 1p27_B RNA-binding protein 8A; 99.8 1.4E-20 4.8E-25 134.3 10.8 84 51-134 21-104 (106)
25 3p5t_L Cleavage and polyadenyl 99.8 2.1E-21 7E-26 134.9 6.1 83 54-136 2-86 (90)
26 1x4h_A RNA-binding protein 28; 99.8 3E-20 1E-24 133.6 12.5 88 50-137 12-105 (111)
27 2cph_A RNA binding motif prote 99.8 2.9E-20 9.9E-25 132.8 12.3 88 49-136 11-100 (107)
28 2cqd_A RNA-binding region cont 99.8 7.4E-20 2.5E-24 132.7 14.6 86 50-136 14-99 (116)
29 2la6_A RNA-binding protein FUS 99.8 2.2E-20 7.4E-25 131.9 11.4 84 48-131 8-99 (99)
30 1x5s_A Cold-inducible RNA-bind 99.8 2E-20 6.8E-25 132.6 10.8 87 50-136 9-95 (102)
31 1oo0_B CG8781-PA, drosophila Y 99.8 1.9E-20 6.6E-25 134.5 10.9 86 50-135 23-108 (110)
32 2fy1_A RNA-binding motif prote 99.8 3.8E-20 1.3E-24 134.6 12.5 86 51-137 5-90 (116)
33 2d9p_A Polyadenylate-binding p 99.8 4E-20 1.4E-24 131.3 12.4 86 50-137 12-97 (103)
34 1wi8_A EIF-4B, eukaryotic tran 99.8 4.4E-20 1.5E-24 131.4 12.6 86 50-137 12-98 (104)
35 2dng_A Eukaryotic translation 99.8 6.9E-20 2.3E-24 130.2 13.5 85 50-136 12-96 (103)
36 2dnh_A Bruno-like 5, RNA bindi 99.8 5.2E-20 1.8E-24 131.1 12.7 85 51-136 13-100 (105)
37 3ns6_A Eukaryotic translation 99.8 3.5E-21 1.2E-25 136.5 6.4 82 51-132 4-92 (100)
38 1u6f_A Tcubp1, RNA-binding pro 99.8 5.8E-20 2E-24 137.4 13.3 92 48-139 37-128 (139)
39 2cpe_A RNA-binding protein EWS 99.8 4E-20 1.4E-24 133.5 11.8 88 49-136 11-106 (113)
40 4a8x_A RNA-binding protein wit 99.8 3.2E-20 1.1E-24 127.8 10.7 83 52-134 3-86 (88)
41 2dgp_A Bruno-like 4, RNA bindi 99.8 3.3E-20 1.1E-24 132.3 11.0 88 49-136 9-99 (106)
42 2khc_A Testis-specific RNP-typ 99.8 1.1E-19 3.9E-24 132.1 14.1 83 49-131 36-118 (118)
43 2cpf_A RNA binding motif prote 99.8 3E-20 1E-24 130.7 10.4 86 51-136 3-91 (98)
44 2div_A TRNA selenocysteine ass 99.8 3.2E-20 1.1E-24 130.8 10.3 84 51-134 7-95 (99)
45 2do0_A HnRNP M, heterogeneous 99.8 2.9E-19 9.8E-24 129.1 15.1 86 50-136 12-97 (114)
46 2rs2_A Musashi-1, RNA-binding 99.8 5.1E-20 1.8E-24 132.5 11.0 87 49-136 21-107 (109)
47 2cq3_A RNA-binding protein 9; 99.8 2.9E-19 1E-23 126.8 14.7 87 48-136 10-96 (103)
48 3ulh_A THO complex subunit 4; 99.8 9.5E-20 3.3E-24 130.1 12.2 82 49-131 25-106 (107)
49 3s7r_A Heterogeneous nuclear r 99.8 9.4E-20 3.2E-24 125.4 11.5 80 50-130 8-87 (87)
50 2dhg_A TRNA selenocysteine ass 99.8 5.2E-20 1.8E-24 130.9 10.5 86 51-137 7-94 (104)
51 3ex7_B RNA-binding protein 8A; 99.8 4.2E-20 1.4E-24 135.9 10.1 88 50-137 19-106 (126)
52 2dgx_A KIAA0430 protein; RRM d 99.8 8.7E-20 3E-24 128.2 11.2 84 50-136 6-93 (96)
53 3ucg_A Polyadenylate-binding p 99.8 7.9E-20 2.7E-24 126.1 10.8 81 52-133 5-85 (89)
54 2kxn_B Transformer-2 protein h 99.8 4.3E-20 1.5E-24 136.9 9.9 85 50-134 43-127 (129)
55 3n9u_C Cleavage and polyadenyl 99.8 5E-20 1.7E-24 140.9 10.5 81 52-132 54-136 (156)
56 2dgv_A HnRNP M, heterogeneous 99.8 9.5E-20 3.3E-24 126.6 11.0 84 51-136 6-89 (92)
57 2dh8_A DAZ-associated protein 99.8 6.8E-20 2.3E-24 130.5 10.2 87 50-137 13-99 (105)
58 2dgw_A Probable RNA-binding pr 99.8 2.2E-19 7.6E-24 124.6 12.4 83 49-134 6-88 (91)
59 2ywk_A Putative RNA-binding pr 99.8 9.2E-20 3.1E-24 127.4 10.5 82 50-132 13-94 (95)
60 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.2E-19 1.1E-23 126.6 13.3 85 50-136 12-96 (103)
61 1s79_A Lupus LA protein; RRM, 99.8 4.1E-20 1.4E-24 131.8 8.6 79 51-131 9-87 (103)
62 1p1t_A Cleavage stimulation fa 99.8 2.3E-20 7.7E-25 132.7 7.0 85 51-135 6-90 (104)
63 2cqg_A TDP-43, TAR DNA-binding 99.8 3.7E-19 1.3E-23 126.3 13.3 85 50-136 12-96 (103)
64 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.6E-19 9E-24 136.4 13.3 87 51-137 37-123 (156)
65 2cqp_A RNA-binding protein 12; 99.8 8.3E-20 2.8E-24 128.4 9.7 83 51-133 13-95 (98)
66 2lea_A Serine/arginine-rich sp 99.8 3.5E-20 1.2E-24 138.4 8.0 90 48-137 42-131 (135)
67 2cq4_A RNA binding motif prote 99.8 4E-20 1.4E-24 133.7 8.1 82 51-133 23-104 (114)
68 2kn4_A Immunoglobulin G-bindin 99.8 2E-19 6.7E-24 137.2 12.1 87 50-136 67-153 (158)
69 1x4b_A Heterogeneous nuclear r 99.8 1.7E-19 5.7E-24 130.8 11.0 86 51-137 25-110 (116)
70 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.8E-20 1.3E-24 131.0 7.2 84 49-134 15-99 (100)
71 2kt5_A RNA and export factor-b 99.8 3.2E-19 1.1E-23 130.9 12.4 87 49-136 31-117 (124)
72 2m2b_A RNA-binding protein 10; 99.8 7.1E-20 2.4E-24 135.8 8.9 86 50-136 20-111 (131)
73 1x5o_A RNA binding motif, sing 99.8 6.9E-19 2.3E-23 127.1 13.8 84 49-133 21-112 (114)
74 1x4e_A RNA binding motif, sing 99.8 2.7E-20 9.2E-25 127.6 5.8 80 51-130 3-82 (85)
75 2jwn_A Embryonic polyadenylate 99.8 1.1E-19 3.6E-24 133.3 9.3 83 51-134 34-116 (124)
76 1x4a_A Splicing factor, argini 99.8 9.5E-19 3.3E-23 125.5 14.1 85 50-137 19-103 (109)
77 2ek1_A RNA-binding protein 12; 99.8 7.5E-20 2.6E-24 127.9 8.1 82 51-132 13-94 (95)
78 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.5E-19 8.4E-24 138.0 11.3 87 50-136 69-155 (165)
79 2err_A Ataxin-2-binding protei 99.8 2.8E-19 9.5E-24 128.5 10.7 84 48-133 24-107 (109)
80 2mss_A Protein (musashi1); RNA 99.8 5.3E-20 1.8E-24 123.2 6.2 75 55-130 1-75 (75)
81 1fj7_A Nucleolin RBD1, protein 99.8 3E-20 1E-24 131.5 4.7 85 50-136 14-98 (101)
82 2nlw_A Eukaryotic translation 99.8 2.9E-19 9.9E-24 127.6 9.8 81 51-133 13-100 (105)
83 2dis_A Unnamed protein product 99.8 2.3E-19 8E-24 128.5 9.3 86 51-136 6-95 (109)
84 2ki2_A SS-DNA binding protein 99.8 2.7E-20 9.3E-25 128.9 4.1 82 54-136 2-83 (90)
85 1wg5_A Heterogeneous nuclear r 99.8 5.5E-19 1.9E-23 125.9 11.0 85 49-135 11-96 (104)
86 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.4E-19 1.5E-23 132.3 10.9 82 49-130 59-140 (140)
87 1uaw_A Mouse-musashi-1; RNP-ty 99.8 8.4E-20 2.9E-24 122.6 6.2 76 54-130 1-76 (77)
88 2cpi_A CCR4-NOT transcription 99.8 2.4E-19 8.2E-24 129.3 9.0 84 51-134 13-102 (111)
89 1sjq_A Polypyrimidine tract-bi 99.8 3E-19 1E-23 127.4 8.9 80 51-136 14-95 (105)
90 2j8a_A Histone-lysine N-methyl 99.8 1.3E-18 4.4E-23 127.3 12.4 77 54-130 3-93 (136)
91 2ad9_A Polypyrimidine tract-bi 99.8 7.9E-19 2.7E-23 128.1 11.2 82 50-137 28-111 (119)
92 1wel_A RNA-binding protein 12; 99.8 2.1E-19 7.3E-24 132.0 8.2 84 48-132 20-103 (124)
93 2cq1_A PTB-like protein L; RRM 99.8 2E-18 6.9E-23 122.5 12.9 80 51-136 13-94 (101)
94 2fc9_A NCL protein; structure 99.8 1.8E-18 6.2E-23 122.2 12.6 81 51-135 13-93 (101)
95 1wez_A HnRNP H', FTP-3, hetero 99.8 1E-18 3.4E-23 124.3 11.0 82 51-135 13-94 (102)
96 2fc8_A NCL protein; structure 99.8 2.1E-18 7.3E-23 122.0 12.6 84 50-136 12-95 (102)
97 2cpx_A Hypothetical protein FL 99.8 2.8E-19 9.5E-24 129.3 8.1 88 50-137 22-109 (115)
98 2cpy_A RNA-binding protein 12; 99.8 3.6E-19 1.2E-23 128.9 8.7 82 51-134 13-95 (114)
99 2dnq_A RNA-binding protein 4B; 99.8 2E-18 6.9E-23 119.5 11.8 80 50-137 5-84 (90)
100 2db1_A Heterogeneous nuclear r 99.8 1.1E-18 3.8E-23 127.2 11.0 82 49-132 13-97 (118)
101 1x4c_A Splicing factor, argini 99.8 2.8E-18 9.5E-23 123.0 12.8 80 50-136 12-96 (108)
102 2wbr_A GW182, gawky, LD47780P; 99.8 5.6E-19 1.9E-23 121.2 8.5 75 51-131 5-79 (89)
103 3r27_A HnRNP L, heterogeneous 99.8 1.6E-18 5.6E-23 122.5 11.0 78 51-134 19-98 (100)
104 2a3j_A U1 small nuclear ribonu 99.8 8.5E-19 2.9E-23 129.5 9.8 82 51-135 27-112 (127)
105 1why_A Hypothetical protein ri 99.8 2.8E-18 9.5E-23 120.5 11.9 79 51-135 15-95 (97)
106 2hgl_A HNRPF protein, heteroge 99.8 4.5E-19 1.5E-23 132.5 8.2 83 48-132 39-124 (136)
107 1nu4_A U1A RNA binding domain; 99.8 6E-19 2.1E-23 123.7 8.2 83 50-135 5-91 (97)
108 2dgu_A Heterogeneous nuclear r 99.8 4.8E-18 1.6E-22 120.6 12.7 82 51-140 9-90 (103)
109 1x4d_A Matrin 3; structural ge 99.8 1.2E-18 4E-23 123.9 9.4 78 51-134 13-93 (102)
110 2krb_A Eukaryotic translation 99.8 3.2E-19 1.1E-23 121.3 6.2 73 53-127 1-80 (81)
111 1fjc_A Nucleolin RBD2, protein 99.8 9E-19 3.1E-23 122.6 8.6 83 48-135 11-93 (96)
112 2jvo_A Nucleolar protein 3; nu 99.8 2E-18 6.7E-23 124.0 10.4 80 49-136 27-106 (108)
113 3md3_A Nuclear and cytoplasmic 99.8 3.7E-18 1.3E-22 129.8 12.6 101 31-131 62-165 (166)
114 2dgt_A RNA-binding protein 30; 99.8 6.4E-18 2.2E-22 117.5 12.6 79 50-136 7-85 (92)
115 2lmi_A GRSF-1, G-rich sequence 99.8 2.4E-19 8.4E-24 128.4 5.4 82 49-132 7-91 (107)
116 2e5j_A Methenyltetrahydrofolat 99.8 3.2E-18 1.1E-22 120.3 10.8 80 50-134 16-95 (97)
117 2lcw_A RNA-binding protein FUS 99.6 2.7E-20 9.1E-25 135.2 0.0 88 50-137 4-99 (116)
118 2dnp_A RNA-binding protein 14; 99.8 3.9E-18 1.3E-22 118.1 10.9 79 50-136 6-84 (90)
119 1x4g_A Nucleolysin TIAR; struc 99.8 3.7E-18 1.3E-22 122.4 11.1 81 50-136 22-102 (109)
120 3q2s_C Cleavage and polyadenyl 99.8 7.9E-19 2.7E-23 142.2 8.4 81 52-132 67-149 (229)
121 3lqv_A PRE-mRNA branch site pr 99.8 2.5E-18 8.6E-23 124.3 10.0 80 51-133 6-85 (115)
122 2hvz_A Splicing factor, argini 99.8 1.5E-18 5.2E-23 122.7 8.6 78 54-136 1-78 (101)
123 2g4b_A Splicing factor U2AF 65 99.8 2.1E-18 7.1E-23 132.3 10.0 101 30-130 70-171 (172)
124 1iqt_A AUF1, heterogeneous nuc 99.8 2.8E-19 9.4E-24 119.6 4.4 75 55-130 1-75 (75)
125 2la4_A Nuclear and cytoplasmic 99.8 2E-18 6.7E-23 122.1 9.0 77 51-133 25-101 (101)
126 2xnq_A Nuclear polyadenylated 99.8 6.3E-18 2.1E-22 119.0 11.4 78 48-133 17-95 (97)
127 2ytc_A PRE-mRNA-splicing facto 99.8 4.1E-18 1.4E-22 116.5 10.2 76 50-131 9-85 (85)
128 2cpj_A Non-POU domain-containi 99.8 4.5E-18 1.5E-22 119.8 10.6 79 51-135 13-91 (99)
129 4f02_A Polyadenylate-binding p 99.8 4.5E-18 1.5E-22 135.9 11.9 84 51-134 13-96 (213)
130 2dnn_A RNA-binding protein 12; 99.8 3.7E-18 1.3E-22 122.8 9.9 79 51-132 14-92 (109)
131 1wex_A Hypothetical protein (r 99.8 4.8E-18 1.6E-22 121.2 10.4 80 51-136 13-94 (104)
132 2cpd_A Apobec-1 stimulating pr 99.8 2.3E-17 7.7E-22 116.2 13.8 78 50-135 12-91 (99)
133 1wf1_A RNA-binding protein RAL 99.8 1.1E-17 3.6E-22 120.2 12.1 77 50-134 24-101 (110)
134 2jvr_A Nucleolar protein 3; RN 99.8 2.4E-18 8E-23 124.2 8.6 79 51-133 26-105 (111)
135 1fxl_A Paraneoplastic encephal 99.8 1.1E-17 3.6E-22 127.4 12.2 83 53-135 2-84 (167)
136 2xs2_A Deleted in azoospermia- 99.8 1.2E-18 4.2E-23 123.4 6.4 82 51-135 7-88 (102)
137 2kvi_A Nuclear polyadenylated 99.7 4.2E-18 1.4E-22 119.5 9.0 79 50-136 7-86 (96)
138 3egn_A RNA-binding protein 40; 99.7 7.8E-19 2.7E-23 131.9 5.4 86 50-136 42-133 (143)
139 1b7f_A Protein (SXL-lethal pro 99.7 9.2E-18 3.1E-22 128.1 11.3 84 52-135 2-85 (168)
140 2i2y_A Fusion protein consists 99.7 7.8E-18 2.7E-22 127.4 10.2 81 49-134 69-149 (150)
141 2cqh_A IGF-II mRNA-binding pro 99.7 7E-18 2.4E-22 117.4 9.1 79 51-136 6-86 (93)
142 2f3j_A RNA and export factor b 99.7 7.7E-18 2.6E-22 131.2 10.2 85 50-135 85-169 (177)
143 1whx_A Hypothetical protein ri 99.7 5E-18 1.7E-22 122.4 8.5 78 51-134 8-85 (111)
144 1x4f_A Matrin 3; structural ge 99.7 9.1E-18 3.1E-22 121.1 9.8 79 51-135 23-104 (112)
145 2qfj_A FBP-interacting repress 99.7 1.7E-17 5.7E-22 131.8 12.2 86 51-136 123-208 (216)
146 2e5g_A U6 snRNA-specific termi 99.7 2.3E-17 8E-22 115.1 10.8 80 51-136 6-85 (94)
147 2e44_A Insulin-like growth fac 99.7 1.1E-17 3.8E-22 117.0 8.9 80 51-134 13-93 (96)
148 2dha_A FLJ20171 protein; RRM d 99.7 4.2E-18 1.5E-22 125.1 6.6 80 51-132 21-104 (123)
149 3pgw_S U1-70K; protein-RNA com 99.7 2.6E-17 9E-22 144.9 12.9 85 51-135 100-184 (437)
150 2yh0_A Splicing factor U2AF 65 99.7 3.6E-17 1.2E-21 128.1 11.8 85 51-135 112-196 (198)
151 2hgn_A Heterogeneous nuclear r 99.7 2.4E-18 8.3E-23 129.0 4.6 84 50-136 43-126 (139)
152 1l3k_A Heterogeneous nuclear r 99.7 2.8E-17 9.5E-22 128.6 10.9 84 50-134 10-93 (196)
153 1x5p_A Negative elongation fac 99.7 1.1E-16 3.8E-21 112.3 12.8 78 51-136 13-90 (97)
154 1b7f_A Protein (SXL-lethal pro 99.7 2.6E-17 8.9E-22 125.6 10.3 100 31-130 66-168 (168)
155 2hgm_A HNRPF protein, heteroge 99.7 1E-17 3.5E-22 123.4 7.4 81 49-132 38-120 (126)
156 3d2w_A TAR DNA-binding protein 99.7 3.6E-17 1.2E-21 113.3 9.7 77 50-135 8-86 (89)
157 1sjr_A Polypyrimidine tract-bi 99.7 3.5E-17 1.2E-21 125.3 10.4 82 51-136 44-127 (164)
158 2cjk_A Nuclear polyadenylated 99.7 1.2E-17 4.1E-22 127.5 7.8 98 35-133 68-166 (167)
159 1wg1_A KIAA1579 protein, homol 99.7 3.5E-17 1.2E-21 112.9 9.4 76 52-134 4-79 (88)
160 1l3k_A Heterogeneous nuclear r 99.7 4.8E-17 1.7E-21 127.2 11.3 86 51-137 102-187 (196)
161 3zzy_A Polypyrimidine tract-bi 99.7 1.2E-16 4.2E-21 118.0 12.0 80 52-136 27-109 (130)
162 1fxl_A Paraneoplastic encephal 99.7 3.6E-17 1.2E-21 124.4 9.2 100 31-130 65-167 (167)
163 3md3_A Nuclear and cytoplasmic 99.7 6.6E-17 2.3E-21 122.8 10.6 81 54-135 1-81 (166)
164 2e5i_A Heterogeneous nuclear r 99.7 1.7E-16 5.8E-21 116.5 12.2 77 54-136 26-105 (124)
165 2cq2_A Hypothetical protein LO 99.7 5.5E-17 1.9E-21 117.2 9.1 79 51-135 23-108 (114)
166 3sde_A Paraspeckle component 1 99.7 1.9E-16 6.6E-21 130.2 13.6 99 30-134 78-180 (261)
167 4f02_A Polyadenylate-binding p 99.7 8.6E-17 2.9E-21 128.4 10.9 81 51-133 101-181 (213)
168 3beg_B Splicing factor, argini 99.7 4.3E-17 1.5E-21 118.2 8.2 78 51-135 14-96 (115)
169 2dnl_A Cytoplasmic polyadenyla 99.7 3.9E-17 1.3E-21 118.1 7.9 79 51-132 6-87 (114)
170 2diu_A KIAA0430 protein; struc 99.7 1E-16 3.6E-21 111.0 9.0 72 54-135 10-86 (96)
171 3tyt_A Heterogeneous nuclear r 99.7 2.4E-16 8.3E-21 125.4 11.5 79 51-134 2-81 (205)
172 2qfj_A FBP-interacting repress 99.7 1.5E-16 5E-21 126.3 9.8 83 51-133 26-108 (216)
173 1fje_B Nucleolin RBD12, protei 99.7 2.8E-16 9.4E-21 121.0 10.9 98 31-133 74-174 (175)
174 2pe8_A Splicing factor 45; RRM 99.7 6.1E-16 2.1E-20 110.4 11.3 82 51-132 6-93 (105)
175 3nmr_A Cugbp ELAV-like family 99.7 2.6E-16 8.9E-21 120.6 10.0 80 51-131 93-175 (175)
176 3smz_A Protein raver-1, ribonu 99.7 1.7E-16 5.7E-21 131.6 9.5 101 31-136 78-178 (284)
177 3nmr_A Cugbp ELAV-like family 99.7 3.1E-16 1E-20 120.2 10.1 83 52-134 2-89 (175)
178 2voo_A Lupus LA protein; RNA-b 99.7 3.7E-16 1.3E-20 123.3 10.8 79 52-132 108-186 (193)
179 2bz2_A Negative elongation fac 99.7 3.2E-16 1.1E-20 114.7 9.7 78 50-135 36-113 (121)
180 2cjk_A Nuclear polyadenylated 99.7 1.7E-16 5.8E-21 121.0 8.6 80 52-133 2-81 (167)
181 1wf0_A TDP-43, TAR DNA-binding 99.7 1.6E-16 5.4E-21 109.4 7.3 79 51-136 3-81 (88)
182 2hzc_A Splicing factor U2AF 65 99.7 2.6E-16 8.8E-21 107.9 8.2 71 51-128 4-85 (87)
183 3smz_A Protein raver-1, ribonu 99.7 4.8E-16 1.6E-20 128.8 10.4 85 50-135 181-266 (284)
184 3pgw_A U1-A; protein-RNA compl 99.6 9.1E-16 3.1E-20 127.0 11.8 83 50-135 6-92 (282)
185 2ghp_A U4/U6 snRNA-associated 99.6 5.3E-16 1.8E-20 129.0 10.1 83 50-133 207-291 (292)
186 3u1l_A PRE-mRNA-splicing facto 99.6 8.1E-16 2.8E-20 124.9 8.5 80 50-135 131-231 (240)
187 2adc_A Polypyrimidine tract-bi 99.6 1.9E-15 6.5E-20 121.8 10.1 82 47-133 28-110 (229)
188 2ghp_A U4/U6 snRNA-associated 99.6 2.2E-15 7.6E-20 125.2 8.2 98 31-135 101-199 (292)
189 1fje_B Nucleolin RBD12, protei 99.6 5.5E-16 1.9E-20 119.3 4.0 84 50-135 10-93 (175)
190 2dit_A HIV TAT specific factor 99.6 1.8E-14 6.1E-19 103.7 11.7 81 51-135 13-104 (112)
191 3sde_A Paraspeckle component 1 99.6 9.5E-15 3.2E-19 120.0 11.2 78 50-133 19-96 (261)
192 1qm9_A Polypyrimidine tract-bi 99.6 3.1E-15 1.1E-19 117.4 7.9 77 52-133 2-79 (198)
193 3pgw_A U1-A; protein-RNA compl 99.6 1.3E-14 4.5E-19 119.9 11.4 76 51-131 205-281 (282)
194 1jmt_A Splicing factor U2AF 35 99.6 1.8E-15 6.3E-20 107.7 4.5 72 58-130 20-103 (104)
195 3tyt_A Heterogeneous nuclear r 99.6 6E-15 2E-19 117.4 7.8 78 51-130 121-204 (205)
196 3v4m_A Splicing factor U2AF 65 99.6 1.7E-14 5.8E-19 102.9 9.2 83 51-133 3-97 (105)
197 1qm9_A Polypyrimidine tract-bi 99.5 1.4E-14 4.8E-19 113.7 8.3 78 51-133 118-197 (198)
198 3ue2_A Poly(U)-binding-splicin 99.5 4.2E-14 1.5E-18 102.9 10.1 81 52-132 19-108 (118)
199 2adc_A Polypyrimidine tract-bi 99.5 3.8E-14 1.3E-18 114.2 10.0 78 51-133 149-228 (229)
200 2g4b_A Splicing factor U2AF 65 99.5 5.8E-14 2E-18 107.3 9.2 76 52-134 3-89 (172)
201 2yh0_A Splicing factor U2AF 65 99.5 1E-13 3.5E-18 108.3 9.5 76 52-134 3-89 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 8.7E-13 3E-17 93.1 11.0 67 63-136 27-93 (100)
203 3s6e_A RNA-binding protein 39; 99.4 2.5E-12 8.4E-17 92.9 10.2 78 51-132 5-92 (114)
204 3tht_A Alkylated DNA repair pr 99.4 1E-12 3.5E-17 111.9 9.1 75 51-131 16-97 (345)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 1.1E-11 3.8E-16 85.0 8.3 74 51-133 5-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.2 3.5E-11 1.2E-15 87.4 8.7 75 51-131 16-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 1.9E-10 6.5E-15 79.3 6.3 72 51-131 13-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 8.4E-10 2.9E-14 88.1 8.2 68 65-132 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.7 1E-07 3.5E-12 67.1 8.9 74 50-129 18-96 (117)
210 1wey_A Calcipressin 1; structu 97.8 6.6E-05 2.3E-09 52.4 7.5 76 52-133 4-84 (104)
211 2dhx_A Poly (ADP-ribose) polym 97.8 0.00065 2.2E-08 47.2 11.5 76 52-136 7-87 (104)
212 1uw4_A UPF3X; nonsense mediate 97.7 0.00038 1.3E-08 47.6 8.9 68 54-121 2-71 (91)
213 1whv_A Poly(A)-specific ribonu 97.6 0.00023 8E-09 48.9 7.4 56 52-116 15-70 (100)
214 3ctr_A Poly(A)-specific ribonu 97.5 0.00027 9.1E-09 48.8 5.9 54 54-116 7-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.3 0.0016 5.5E-08 46.6 8.8 74 50-131 21-95 (119)
216 2l08_A Regulator of nonsense t 96.5 0.0037 1.2E-07 43.0 4.9 69 53-121 9-79 (97)
217 3p3d_A Nucleoporin 53; structu 96.5 0.0037 1.3E-07 45.4 4.9 79 51-131 5-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 96.5 0.0013 4.3E-08 57.9 2.9 55 53-113 53-107 (464)
219 2kn4_A Immunoglobulin G-bindin 95.9 0.0082 2.8E-07 44.4 4.4 35 82-118 2-36 (158)
220 2i2y_A Fusion protein consists 95.3 0.0095 3.3E-07 43.8 2.9 41 91-132 9-50 (150)
221 3d45_A Poly(A)-specific ribonu 92.6 0.34 1.1E-05 43.0 7.7 55 53-116 440-494 (507)
222 2g0c_A ATP-dependent RNA helic 73.7 9.1 0.00031 24.1 5.6 68 55-131 2-75 (76)
223 4e8u_A Putative uncharacterize 63.2 19 0.00066 27.0 6.1 57 54-113 13-81 (172)
224 3pgw_S U1-70K; protein-RNA com 45.6 7.6 0.00026 33.5 1.5 15 69-83 8-22 (437)
225 2v94_A RPS24, 30S ribosomal pr 27.1 1.3E+02 0.0046 20.4 5.2 47 63-110 37-88 (107)
226 3a98_B Engulfment and cell mot 26.7 84 0.0029 24.0 4.5 32 182-213 167-199 (203)
227 3fut_A Dimethyladenosine trans 25.7 56 0.0019 26.0 3.5 34 54-88 111-144 (271)
228 3uzu_A Ribosomal RNA small sub 25.0 34 0.0011 27.4 2.1 35 54-88 115-149 (279)
229 4bby_A Alkyldihydroxyacetoneph 23.3 73 0.0025 28.8 4.2 55 60-115 350-408 (658)
230 4eyt_A Telomerase associated p 20.1 2E+02 0.0068 19.0 7.7 56 52-115 11-66 (129)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=5.1e-23 Score=145.85 Aligned_cols=83 Identities=23% Similarity=0.490 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
...+++|||+|||+++|+++|+++|++||.|.+|.+++++.+|.++|||||+|.+.++|..|+..|||..|+|+.|+|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred eCC
Q 028027 130 IPP 132 (215)
Q Consensus 130 a~~ 132 (215)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 2
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=141.90 Aligned_cols=86 Identities=21% Similarity=0.418 Sum_probs=78.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC-CceeCCeEEEEEEe
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH-GYLLFEHILQVHLI 130 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~-g~~l~g~~l~V~~a 130 (215)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++.||.++|||||+|.+.++|..|++.++ +..++|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999998874 56799999999999
Q ss_pred CCCCCCCC
Q 028027 131 PPEHVHPK 138 (215)
Q Consensus 131 ~~~~~~~~ 138 (215)
.+++....
T Consensus 81 ~~~~~~~~ 88 (91)
T 2lxi_A 81 DPKPKINE 88 (91)
T ss_dssp CSCCCCSC
T ss_pred CCCCCCCC
Confidence 88766543
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=140.17 Aligned_cols=83 Identities=12% Similarity=0.182 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.+.++|||+|||+.+++++|+++|++||.|.+|.|++++.||.++|||||+|.+.++|+.|+..|||..|+|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 028027 131 PPE 133 (215)
Q Consensus 131 ~~~ 133 (215)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 643
No 4
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=132.80 Aligned_cols=83 Identities=23% Similarity=0.385 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.+.++|||+|||+++++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 56789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCC
Q 028027 131 PPE 133 (215)
Q Consensus 131 ~~~ 133 (215)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 765
No 5
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=1.4e-20 Score=136.32 Aligned_cols=90 Identities=23% Similarity=0.393 Sum_probs=83.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
+..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.|+..|||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34667999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeCCCCCCCC
Q 028027 129 LIPPEHVHPK 138 (215)
Q Consensus 129 ~a~~~~~~~~ 138 (215)
++.+....+.
T Consensus 91 ~a~~~~~~~~ 100 (115)
T 2dgo_A 91 WATRKPPAPK 100 (115)
T ss_dssp ESSCCCCCSC
T ss_pred EccCCCCCCc
Confidence 9988765543
No 6
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=6.5e-21 Score=129.96 Aligned_cols=82 Identities=20% Similarity=0.360 Sum_probs=78.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~ 132 (215)
+.+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|+.|+..|||..++|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CC
Q 028027 133 EH 134 (215)
Q Consensus 133 ~~ 134 (215)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 7
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=133.32 Aligned_cols=87 Identities=23% Similarity=0.508 Sum_probs=81.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+. ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4567999999999999999999999999999999999998899999999999999999999998 999999999999999
Q ss_pred eCCCCCCC
Q 028027 130 IPPEHVHP 137 (215)
Q Consensus 130 a~~~~~~~ 137 (215)
+.+.....
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 98876543
No 8
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=131.75 Aligned_cols=86 Identities=26% Similarity=0.512 Sum_probs=81.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.++++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 028027 131 PPEHVH 136 (215)
Q Consensus 131 ~~~~~~ 136 (215)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876554
No 9
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-20 Score=131.93 Aligned_cols=84 Identities=21% Similarity=0.438 Sum_probs=79.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 567899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 028027 131 PPEHV 135 (215)
Q Consensus 131 ~~~~~ 135 (215)
.+...
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87654
No 10
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=133.80 Aligned_cols=87 Identities=29% Similarity=0.479 Sum_probs=82.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 35679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.+....
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9876554
No 11
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.6e-21 Score=135.08 Aligned_cols=88 Identities=20% Similarity=0.295 Sum_probs=82.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
...+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|+.|+..|||..|+|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34667999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 028027 129 LIPPEHVH 136 (215)
Q Consensus 129 ~a~~~~~~ 136 (215)
++.+....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99876543
No 12
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=135.80 Aligned_cols=82 Identities=12% Similarity=0.282 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCC--eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc----eeCCeE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGA--IKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY----LLFEHI 124 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~--v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~----~l~g~~ 124 (215)
..-.+|||+|||+++|+++|+++|++||. |.+|++++|+.||.++|||||+|.+.++|..|++.|||. .|+|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45689999999999999999999999995 678999999999999999999999999999999999996 599999
Q ss_pred EEEEEeCC
Q 028027 125 LQVHLIPP 132 (215)
Q Consensus 125 l~V~~a~~ 132 (215)
|.|+||++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 13
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=134.24 Aligned_cols=87 Identities=22% Similarity=0.396 Sum_probs=82.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.+....
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9887554
No 14
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-20 Score=132.22 Aligned_cols=86 Identities=20% Similarity=0.321 Sum_probs=81.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 028027 131 PPEHVH 136 (215)
Q Consensus 131 ~~~~~~ 136 (215)
.+....
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 887654
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=8.7e-21 Score=129.91 Aligned_cols=81 Identities=30% Similarity=0.495 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..++|+.|+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56799999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred C
Q 028027 131 P 131 (215)
Q Consensus 131 ~ 131 (215)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 16
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=1.4e-20 Score=136.33 Aligned_cols=87 Identities=24% Similarity=0.479 Sum_probs=82.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+++++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|+.|+..||+..|+|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.+....
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9876554
No 17
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.2e-20 Score=132.38 Aligned_cols=84 Identities=27% Similarity=0.497 Sum_probs=79.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
++++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..++|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 028027 132 PEHV 135 (215)
Q Consensus 132 ~~~~ 135 (215)
+...
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 18
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=132.57 Aligned_cols=86 Identities=27% Similarity=0.454 Sum_probs=81.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEE-EEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRL-RIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
.+.++|||+|||+.+++++|+.+|++||.|..+ .++.++.+|.++|||||+|.+.++|+.|+..|||..|+|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.+....
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9887654
No 19
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=132.99 Aligned_cols=87 Identities=29% Similarity=0.497 Sum_probs=82.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 56789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 028027 131 PPEHVHP 137 (215)
Q Consensus 131 ~~~~~~~ 137 (215)
.+.....
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8876543
No 20
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=130.36 Aligned_cols=82 Identities=22% Similarity=0.481 Sum_probs=78.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 35678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred eC
Q 028027 130 IP 131 (215)
Q Consensus 130 a~ 131 (215)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=1.5e-20 Score=136.46 Aligned_cols=83 Identities=24% Similarity=0.409 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
..++|||+|||+++++++|+++|++||.|.+|.|+++. +.++|||||+|.+.++|+.|+..|||..|+|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999985 5589999999999999999999999999999999999998
Q ss_pred CCCCC
Q 028027 132 PEHVH 136 (215)
Q Consensus 132 ~~~~~ 136 (215)
++..+
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 76543
No 22
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=3.3e-20 Score=133.29 Aligned_cols=85 Identities=26% Similarity=0.530 Sum_probs=80.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
...+++|||+|||+.+++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCCCC
Q 028027 130 IPPEH 134 (215)
Q Consensus 130 a~~~~ 134 (215)
+.++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 97754
No 23
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=130.66 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=78.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCC
Q 028027 130 IPP 132 (215)
Q Consensus 130 a~~ 132 (215)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 24
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=134.27 Aligned_cols=84 Identities=17% Similarity=0.358 Sum_probs=79.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.+.++|||+|||+.+++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|+.|+..|||..|+|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 55689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCCC
Q 028027 131 PPEH 134 (215)
Q Consensus 131 ~~~~ 134 (215)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7654
No 25
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=2.1e-21 Score=134.92 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=72.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCC--CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFG--AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
.+|||+|||+++++++|+++|++|| .|.++.++.++.+|.++|||||+|.+.++|+.|+..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999899999999999999999999999999999999999999988
Q ss_pred CCCCC
Q 028027 132 PEHVH 136 (215)
Q Consensus 132 ~~~~~ 136 (215)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76443
No 26
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3e-20 Score=133.56 Aligned_cols=88 Identities=24% Similarity=0.333 Sum_probs=82.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC------CceeCCe
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH------GYLLFEH 123 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~------g~~l~g~ 123 (215)
....++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|| +..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3567899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEeCCCCCCC
Q 028027 124 ILQVHLIPPEHVHP 137 (215)
Q Consensus 124 ~l~V~~a~~~~~~~ 137 (215)
.|.|.++.++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999998875543
No 27
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.9e-20 Score=132.78 Aligned_cols=88 Identities=24% Similarity=0.462 Sum_probs=82.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeec-CCCCCcccEEEEEEcCHHHHHHHHHHh-CCceeCCeEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARN-KKTGQSKHFGFIEFNDPEVAEVVADAM-HGYLLFEHILQ 126 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~-~~tg~~~g~afV~F~~~~~a~~ai~~l-~g~~l~g~~l~ 126 (215)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+ +.+|.++|||||+|.+.++|..|+..| |+..|+|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999998 789999999999999999999999999 99999999999
Q ss_pred EEEeCCCCCC
Q 028027 127 VHLIPPEHVH 136 (215)
Q Consensus 127 V~~a~~~~~~ 136 (215)
|.++.+....
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999887554
No 28
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.4e-20 Score=132.74 Aligned_cols=86 Identities=20% Similarity=0.376 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.|+..|++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999998 89999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.+....
T Consensus 93 a~~~~~~ 99 (116)
T 2cqd_A 93 AYLGAKP 99 (116)
T ss_dssp STTTCCC
T ss_pred cccCCCc
Confidence 9765443
No 29
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=131.85 Aligned_cols=84 Identities=18% Similarity=0.340 Sum_probs=79.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCce
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR--------LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL 119 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~ 119 (215)
++....++|||+|||+++++++|+++|++||.|.. +.++.++.+|.++|||||+|.+.++|+.|+..|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34467799999999999999999999999999999 9999998899999999999999999999999999999
Q ss_pred eCCeEEEEEEeC
Q 028027 120 LFEHILQVHLIP 131 (215)
Q Consensus 120 l~g~~l~V~~a~ 131 (215)
|+|+.|+|.+|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 30
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=132.60 Aligned_cols=87 Identities=21% Similarity=0.408 Sum_probs=82.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..||+..|+|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876554
No 31
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1.9e-20 Score=134.52 Aligned_cols=86 Identities=22% Similarity=0.386 Sum_probs=80.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+.+++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCCCCC
Q 028027 130 IPPEHV 135 (215)
Q Consensus 130 a~~~~~ 135 (215)
+.+...
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 976543
No 32
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-20 Score=134.62 Aligned_cols=86 Identities=26% Similarity=0.464 Sum_probs=80.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+++++++|+++|++||.|..|.++.+. +|.++|||||+|.+.++|+.|+..|||..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 557899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 028027 131 PPEHVHP 137 (215)
Q Consensus 131 ~~~~~~~ 137 (215)
.+.....
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 8765443
No 33
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4e-20 Score=131.29 Aligned_cols=86 Identities=27% Similarity=0.471 Sum_probs=80.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+.+++++|+++|++||.|..|.++.+ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 457889999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 028027 130 IPPEHVHP 137 (215)
Q Consensus 130 a~~~~~~~ 137 (215)
+.+...+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 98876543
No 34
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.4e-20 Score=131.37 Aligned_cols=86 Identities=19% Similarity=0.356 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKT-GQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~t-g~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
....++|||+|||+.+++++|+++|+.|| |..|.|+.++.+ |.++|||||+|.+.++|+.|| .||+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35679999999999999999999999999 999999999877 999999999999999999999 999999999999999
Q ss_pred EeCCCCCCC
Q 028027 129 LIPPEHVHP 137 (215)
Q Consensus 129 ~a~~~~~~~ 137 (215)
++.++....
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 998876543
No 35
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=6.9e-20 Score=130.16 Aligned_cols=85 Identities=22% Similarity=0.460 Sum_probs=79.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+.+++++|+++|++|| |..|.++.++.+|.++|||||+|.+.++|..|+ .|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 35679999999999999999999999997 999999999989999999999999999999999 8999999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9876544
No 36
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=5.2e-20 Score=131.10 Aligned_cols=85 Identities=22% Similarity=0.415 Sum_probs=80.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC---eEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE---HILQV 127 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g---~~l~V 127 (215)
...++|||+|||+.+++++|+.+|++||.|..|.|+.++ +|.++|||||+|.+.++|..|+..|||..+.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457999999999999999999999999999999999997 89999999999999999999999999999988 99999
Q ss_pred EEeCCCCCC
Q 028027 128 HLIPPEHVH 136 (215)
Q Consensus 128 ~~a~~~~~~ 136 (215)
.++.+...+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999887654
No 37
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=3.5e-21 Score=136.45 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCC------CCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC-e
Q 028027 51 NKATVLYIGRIPH------GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE-H 123 (215)
Q Consensus 51 ~~~~~l~V~nLp~------~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g-~ 123 (215)
...++|||+|||+ .+++++|+++|++||.|.+|.|++++.||.++|||||+|.+.++|..|+..|||..|+| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999999899999999999999999999999999999999 9
Q ss_pred EEEEEEeCC
Q 028027 124 ILQVHLIPP 132 (215)
Q Consensus 124 ~l~V~~a~~ 132 (215)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999864
No 38
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=5.8e-20 Score=137.36 Aligned_cols=92 Identities=24% Similarity=0.514 Sum_probs=84.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
+.....++|||+|||+++++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCC
Q 028027 128 HLIPPEHVHPKL 139 (215)
Q Consensus 128 ~~a~~~~~~~~~ 139 (215)
.++.+...++..
T Consensus 117 ~~a~~~~~~~~~ 128 (139)
T 1u6f_A 117 ALAASGHQRPGI 128 (139)
T ss_dssp EESSCCCCCCCS
T ss_pred EECCCCCCCCCC
Confidence 999987665433
No 39
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4e-20 Score=133.48 Aligned_cols=88 Identities=20% Similarity=0.328 Sum_probs=82.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCee--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIK--------RLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL 120 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l 120 (215)
.....++|||+|||+.+++++|+++|++||.|. .|.|+.++.+|.++|||||+|.+.++|..|+..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 346779999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCeEEEEEEeCCCCCC
Q 028027 121 FEHILQVHLIPPEHVH 136 (215)
Q Consensus 121 ~g~~l~V~~a~~~~~~ 136 (215)
.|+.|+|.++.+....
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999876554
No 40
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=127.78 Aligned_cols=83 Identities=23% Similarity=0.412 Sum_probs=77.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCC-cccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ-SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~-~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.+++|||+|||+++++++|+++|++||.|..+.++.+..++. ++|||||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999887666 8999999999999999999999999999999999999
Q ss_pred CCCC
Q 028027 131 PPEH 134 (215)
Q Consensus 131 ~~~~ 134 (215)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=3.3e-20 Score=132.33 Aligned_cols=88 Identities=27% Similarity=0.445 Sum_probs=81.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee---CCeEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL---FEHIL 125 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l---~g~~l 125 (215)
+..+.++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 346679999999999999999999999999999999999988999999999999999999999999999987 89999
Q ss_pred EEEEeCCCCCC
Q 028027 126 QVHLIPPEHVH 136 (215)
Q Consensus 126 ~V~~a~~~~~~ 136 (215)
.|.++.+....
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999876543
No 42
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.1e-19 Score=132.07 Aligned_cols=83 Identities=29% Similarity=0.529 Sum_probs=78.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
+..+.++|||+|||+++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|+.|+..|||..|+|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34667999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeC
Q 028027 129 LIP 131 (215)
Q Consensus 129 ~a~ 131 (215)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=130.71 Aligned_cols=86 Identities=27% Similarity=0.423 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCC---CCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKK---TGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~---tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
.+.++|||+|||+++++++|+++|++||.|..|.++.++. |+.++|||||+|.+.++|..|+..|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999999875 6689999999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q 028027 128 HLIPPEHVH 136 (215)
Q Consensus 128 ~~a~~~~~~ 136 (215)
.++.+....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 44
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=130.83 Aligned_cols=84 Identities=23% Similarity=0.339 Sum_probs=79.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCee-EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeE----E
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIK-RLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI----L 125 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~-~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~----l 125 (215)
...++|||+|||+++++++|+++|++||.|. .|.++.++.+|.++|||||+|.+.++|+.|+..|||..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4678999999999999999999999999999 9999999889999999999999999999999999999999999 9
Q ss_pred EEEEeCCCC
Q 028027 126 QVHLIPPEH 134 (215)
Q Consensus 126 ~V~~a~~~~ 134 (215)
+|.++.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999997654
No 45
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.9e-19 Score=129.08 Aligned_cols=86 Identities=20% Similarity=0.317 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+.+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3557899999999999999999999999999999999997 799999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+......
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9765443
No 46
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=5.1e-20 Score=132.45 Aligned_cols=87 Identities=21% Similarity=0.381 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
...+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..+ +..|+|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999889999999999999999999999876 599999999999
Q ss_pred EeCCCCCC
Q 028027 129 LIPPEHVH 136 (215)
Q Consensus 129 ~a~~~~~~ 136 (215)
++.++...
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99887654
No 47
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.9e-19 Score=126.80 Aligned_cols=87 Identities=24% Similarity=0.450 Sum_probs=79.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
......++|||+|||+.+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|..|+..|||..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3346779999999999999999999999999999999999853 38999999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q 028027 128 HLIPPEHVH 136 (215)
Q Consensus 128 ~~a~~~~~~ 136 (215)
.++.+....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999887554
No 48
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=9.5e-20 Score=130.14 Aligned_cols=82 Identities=18% Similarity=0.343 Sum_probs=78.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
+....++|||+|||+.+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34667999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EeC
Q 028027 129 LIP 131 (215)
Q Consensus 129 ~a~ 131 (215)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 49
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=9.4e-20 Score=125.41 Aligned_cols=80 Identities=25% Similarity=0.462 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+. +++..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999999998899999999999999999999995 588899999999987
Q ss_pred e
Q 028027 130 I 130 (215)
Q Consensus 130 a 130 (215)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 50
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=130.87 Aligned_cols=86 Identities=17% Similarity=0.351 Sum_probs=80.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhcc-CCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCce-eCCeEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQ-FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL-LFEHILQVH 128 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~-l~g~~l~V~ 128 (215)
...++|||+|||+.+++++|+++|++ ||.|..|.|+.++ +|.++|||||+|.+.++|..|+..|||.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 56789999999999999999999999 9999999999998 99999999999999999999999999999 999999999
Q ss_pred EeCCCCCCC
Q 028027 129 LIPPEHVHP 137 (215)
Q Consensus 129 ~a~~~~~~~ 137 (215)
++.+.....
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998765543
No 51
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=4.2e-20 Score=135.85 Aligned_cols=88 Identities=16% Similarity=0.325 Sum_probs=82.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 35578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 028027 130 IPPEHVHP 137 (215)
Q Consensus 130 a~~~~~~~ 137 (215)
+.+.....
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 98765543
No 52
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.7e-20 Score=128.17 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQ----AFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l 125 (215)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.++.++.+ +|||||+|.+.++|+.|+..|||..|+|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3567899999999999999999 99999999999999998754 8999999999999999999999999999999
Q ss_pred EEEEeCCCCCC
Q 028027 126 QVHLIPPEHVH 136 (215)
Q Consensus 126 ~V~~a~~~~~~ 136 (215)
+|.++.+....
T Consensus 83 ~V~~a~~~~~~ 93 (96)
T 2dgx_A 83 LVSLATGASGP 93 (96)
T ss_dssp EEEECCCSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999876543
No 53
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=7.9e-20 Score=126.14 Aligned_cols=81 Identities=27% Similarity=0.460 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|+.|+ .|||..++|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999889999999999999999999999 999999999999999987
Q ss_pred CC
Q 028027 132 PE 133 (215)
Q Consensus 132 ~~ 133 (215)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 54
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=4.3e-20 Score=136.87 Aligned_cols=85 Identities=18% Similarity=0.308 Sum_probs=80.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|+.|+..|||..|+|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCCCC
Q 028027 130 IPPEH 134 (215)
Q Consensus 130 a~~~~ 134 (215)
+.++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98754
No 55
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=140.88 Aligned_cols=81 Identities=16% Similarity=0.307 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCC--CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFG--AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..++|||+|||+++++++|+++|+.|| .|..|.|+.++.+|.++|||||+|.+.++|+.||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eCC
Q 028027 130 IPP 132 (215)
Q Consensus 130 a~~ 132 (215)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 854
No 56
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=9.5e-20 Score=126.59 Aligned_cols=84 Identities=25% Similarity=0.384 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+++++|+.+|++||.|..|.++.+ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56789999999999999999999999999999999984 8999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 028027 131 PPEHVH 136 (215)
Q Consensus 131 ~~~~~~ 136 (215)
.+....
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 876543
No 57
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.8e-20 Score=130.55 Aligned_cols=87 Identities=24% Similarity=0.487 Sum_probs=81.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|+.|+.. ++..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 35679999999999999999999999999999999999988999999999999999999999988 99999999999999
Q ss_pred eCCCCCCC
Q 028027 130 IPPEHVHP 137 (215)
Q Consensus 130 a~~~~~~~ 137 (215)
+.++...+
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 98776543
No 58
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.2e-19 Score=124.61 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=77.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
+....++|||+|||+.+++++|+++|+.| .|..|.++.+ .+|.++|||||+|.+.++|..|+. |||..|+|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 9999999999 699999999999999999999999 99999999999999
Q ss_pred EeCCCC
Q 028027 129 LIPPEH 134 (215)
Q Consensus 129 ~a~~~~ 134 (215)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998764
No 59
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=9.2e-20 Score=127.41 Aligned_cols=82 Identities=21% Similarity=0.458 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+.+++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 3567899999999999999999999999999999999997 599999999999999999999999999999999999999
Q ss_pred eCC
Q 028027 130 IPP 132 (215)
Q Consensus 130 a~~ 132 (215)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 60
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-19 Score=126.60 Aligned_cols=85 Identities=20% Similarity=0.359 Sum_probs=77.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+.+++++|+.+|++||.|..|.|+.++ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 4567999999999999999999999999999999999985 33689999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9876543
No 61
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-20 Score=131.80 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+++|+++|+++|++||.|.+|.|++++. |.++|||||+|.+.++|..|+. ++|..|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4568999999999999999999999999999999999985 9999999999999999999998 8999999999999986
Q ss_pred C
Q 028027 131 P 131 (215)
Q Consensus 131 ~ 131 (215)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 4
No 62
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-20 Score=132.68 Aligned_cols=85 Identities=25% Similarity=0.477 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 028027 131 PPEHV 135 (215)
Q Consensus 131 ~~~~~ 135 (215)
.+...
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 76543
No 63
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.7e-19 Score=126.29 Aligned_cols=85 Identities=25% Similarity=0.441 Sum_probs=78.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|..|+. +++.|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4567899999999999999999999999999999999998899999999999999999999997 57899999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9886554
No 64
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=2.6e-19 Score=136.43 Aligned_cols=87 Identities=22% Similarity=0.308 Sum_probs=82.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||..||+..|+|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 56799999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 028027 131 PPEHVHP 137 (215)
Q Consensus 131 ~~~~~~~ 137 (215)
.+.....
T Consensus 117 ~~~~~~~ 123 (156)
T 1h2v_Z 117 AGFKEGR 123 (156)
T ss_dssp SCCCTTC
T ss_pred CCCCCcC
Confidence 8765443
No 65
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=8.3e-20 Score=128.45 Aligned_cols=83 Identities=12% Similarity=0.166 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|+.|+..|||..|+|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45689999999999999999999999999998888888889999999999999999999999999999999999999998
Q ss_pred CCC
Q 028027 131 PPE 133 (215)
Q Consensus 131 ~~~ 133 (215)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 66
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=3.5e-20 Score=138.40 Aligned_cols=90 Identities=26% Similarity=0.377 Sum_probs=83.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
++....++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.|+..|||..|+|+.|.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeCCCCCCC
Q 028027 128 HLIPPEHVHP 137 (215)
Q Consensus 128 ~~a~~~~~~~ 137 (215)
.++.+.....
T Consensus 122 ~~a~~~~~~~ 131 (135)
T 2lea_A 122 QMARYGRPPD 131 (135)
T ss_dssp EECCCCCCCT
T ss_pred EECCCCCCCc
Confidence 9998765543
No 67
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4e-20 Score=133.73 Aligned_cols=82 Identities=18% Similarity=0.399 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.|+ .|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45689999999999999999999999999999999999988999999999999999999999 99999999999999998
Q ss_pred CCC
Q 028027 131 PPE 133 (215)
Q Consensus 131 ~~~ 133 (215)
.+.
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 654
No 68
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=2e-19 Score=137.20 Aligned_cols=87 Identities=25% Similarity=0.379 Sum_probs=81.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.+....
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9876544
No 69
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=130.85 Aligned_cols=86 Identities=15% Similarity=0.322 Sum_probs=80.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|..||.. ++..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4568999999999999999999999999999999999988999999999999999999999987 999999999999999
Q ss_pred CCCCCCC
Q 028027 131 PPEHVHP 137 (215)
Q Consensus 131 ~~~~~~~ 137 (215)
.++....
T Consensus 104 ~~~~~~~ 110 (116)
T 1x4b_A 104 VAREESG 110 (116)
T ss_dssp SSCCCCC
T ss_pred CCCccCC
Confidence 8876543
No 70
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=3.8e-20 Score=131.00 Aligned_cols=84 Identities=19% Similarity=0.369 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecC-CCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNK-KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
.....++|||+|||+++++++|+++|+.|| |..|.++.++ .+|.++|||||+|.+.++|..|+ .|||..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 346779999999999999999999999999 9999999997 58999999999999999999999 89999999999999
Q ss_pred EEeCCCC
Q 028027 128 HLIPPEH 134 (215)
Q Consensus 128 ~~a~~~~ 134 (215)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997753
No 71
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=3.2e-19 Score=130.89 Aligned_cols=87 Identities=17% Similarity=0.311 Sum_probs=81.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
.....++|||+|||+.+++++|+++|+.||.|..|.++.+. +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34667899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 028027 129 LIPPEHVH 136 (215)
Q Consensus 129 ~a~~~~~~ 136 (215)
++.+....
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99876554
No 72
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=7.1e-20 Score=135.84 Aligned_cols=86 Identities=10% Similarity=0.219 Sum_probs=79.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeE--EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc----eeCCe
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR--LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY----LLFEH 123 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~--v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~----~l~g~ 123 (215)
....++|||+|||+++++++|+++|++||.|.. |+|++++.+|.++|||||+|.+. +|..|+..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEEeCCCCCC
Q 028027 124 ILQVHLIPPEHVH 136 (215)
Q Consensus 124 ~l~V~~a~~~~~~ 136 (215)
.|.|.++.+....
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876443
No 73
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.9e-19 Score=127.13 Aligned_cols=84 Identities=26% Similarity=0.468 Sum_probs=78.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee--------
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL-------- 120 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l-------- 120 (215)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|..|+..|||..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred CCeEEEEEEeCCC
Q 028027 121 FEHILQVHLIPPE 133 (215)
Q Consensus 121 ~g~~l~V~~a~~~ 133 (215)
.++.|.|.|+.+.
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999764
No 74
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-20 Score=127.61 Aligned_cols=80 Identities=19% Similarity=0.368 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.++++|||+|||+++++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|+|.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999887654
No 75
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=1.1e-19 Score=133.34 Aligned_cols=83 Identities=23% Similarity=0.425 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+ .|||..|+|+.|.|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35689999999999999999999999999999999999889999999999999999999999 89999999999999998
Q ss_pred CCCC
Q 028027 131 PPEH 134 (215)
Q Consensus 131 ~~~~ 134 (215)
.+..
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7653
No 76
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.5e-19 Score=125.46 Aligned_cols=85 Identities=25% Similarity=0.425 Sum_probs=77.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+.+++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|+.|+..||+..|+|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999954 456899999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 028027 130 IPPEHVHP 137 (215)
Q Consensus 130 a~~~~~~~ 137 (215)
+.+.....
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4a_A 96 PRSGRGTG 103 (109)
T ss_dssp CCCCCCCC
T ss_pred cccCCCCC
Confidence 98865543
No 77
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=7.5e-20 Score=127.88 Aligned_cols=82 Identities=12% Similarity=0.160 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|+.|+..||+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 44689999999999999999999999999999988888889999999999999999999999999999999999999987
Q ss_pred CC
Q 028027 131 PP 132 (215)
Q Consensus 131 ~~ 132 (215)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 78
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=2.5e-19 Score=137.99 Aligned_cols=87 Identities=22% Similarity=0.384 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.+....
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9776543
No 79
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=128.54 Aligned_cols=84 Identities=25% Similarity=0.456 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
......++|||+|||..+++++|+++|++||.|..|.++.+. +.++|||||+|.+.++|+.|+..|||..|+|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344678999999999999999999999999999999999884 458999999999999999999999999999999999
Q ss_pred EEeCCC
Q 028027 128 HLIPPE 133 (215)
Q Consensus 128 ~~a~~~ 133 (215)
.++.++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999765
No 80
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=5.3e-20 Score=123.18 Aligned_cols=75 Identities=19% Similarity=0.464 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 55 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
+|||+|||+++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|+.|+. |||..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999997 9999999999999875
No 81
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=3e-20 Score=131.52 Aligned_cols=85 Identities=18% Similarity=0.298 Sum_probs=77.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+++++++|+.+|++||.|.. .++.+..+|.++|||||+|.+.++|+.|+. |||..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346789999999999999999999999999888 666666789999999999999999999998 999999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9876554
No 82
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=127.57 Aligned_cols=81 Identities=22% Similarity=0.390 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCC------cHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCe-
Q 028027 51 NKATVLYIGRIPHGF------YEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH- 123 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~------te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~- 123 (215)
...++|||+|||+.+ ++++|+.+|++||.|..|.+++ .+|.++|||||+|.+.++|..|+..|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 456899999999999 8899999999999999999883 5899999999999999999999999999999998
Q ss_pred EEEEEEeCCC
Q 028027 124 ILQVHLIPPE 133 (215)
Q Consensus 124 ~l~V~~a~~~ 133 (215)
.|.|.++.+.
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998754
No 83
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=128.53 Aligned_cols=86 Identities=17% Similarity=0.281 Sum_probs=79.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCC-eeEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CceeCCeEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGA-IKRLRIA-RNKKTGQSKHFGFIEFNDPEVAEVVADAMH--GYLLFEHILQ 126 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~-~~~~tg~~~g~afV~F~~~~~a~~ai~~l~--g~~l~g~~l~ 126 (215)
.+.++|||+|||+.+++++|+++|++||. |..|.++ .+..+|.++|||||+|.+.++|..|+..|+ +..++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 788889999999999999999999999996 5899999999
Q ss_pred EEEeCCCCCC
Q 028027 127 VHLIPPEHVH 136 (215)
Q Consensus 127 V~~a~~~~~~ 136 (215)
|.++.+....
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999886553
No 84
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=2.7e-20 Score=128.93 Aligned_cols=82 Identities=18% Similarity=0.413 Sum_probs=74.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCCC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~~ 133 (215)
++|||+|||+++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.+ |..|+..|||..++|+.|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999889999999999999999 99999999999999999999999876
Q ss_pred CCC
Q 028027 134 HVH 136 (215)
Q Consensus 134 ~~~ 136 (215)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 443
No 85
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.5e-19 Score=125.90 Aligned_cols=85 Identities=18% Similarity=0.304 Sum_probs=77.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR-LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
+....++|||+|||+.+++++|+++|++||.|.. |.|+.+ .+|+++|||||+|.+.++|+.||.. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999987 889888 6999999999999999999999987 999999999999
Q ss_pred EEeCCCCC
Q 028027 128 HLIPPEHV 135 (215)
Q Consensus 128 ~~a~~~~~ 135 (215)
.++.+...
T Consensus 89 ~~~~~~~~ 96 (104)
T 1wg5_A 89 FKSSRAEV 96 (104)
T ss_dssp EEECTTTS
T ss_pred EECCHHHH
Confidence 99876543
No 86
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=4.4e-19 Score=132.35 Aligned_cols=82 Identities=29% Similarity=0.483 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34678999999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred Ee
Q 028027 129 LI 130 (215)
Q Consensus 129 ~a 130 (215)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 87
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.4e-20 Score=122.64 Aligned_cols=76 Identities=22% Similarity=0.412 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
++|||+|||+++++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|..|+..++ ..++|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999999 9999999999986
No 88
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=129.25 Aligned_cols=84 Identities=12% Similarity=0.256 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHH---HHhccCCCeeEEEEeecCCCC---CcccEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQ---AFFSQFGAIKRLRIARNKKTG---QSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 124 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~---~~F~~~G~v~~v~i~~~~~tg---~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~ 124 (215)
...++|||+|||+.+++++|+ ++|++||.|..|.++.+..++ .++|||||+|.+.++|+.|+..|||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 446789999999999999999 999999999999999887654 55699999999999999999999999999999
Q ss_pred EEEEEeCCCC
Q 028027 125 LQVHLIPPEH 134 (215)
Q Consensus 125 l~V~~a~~~~ 134 (215)
|.|.++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998775
No 89
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3e-19 Score=127.40 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--ceeCCeEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHG--YLLFEHILQVH 128 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g--~~l~g~~l~V~ 128 (215)
.+.++|||+|||+.+++++|+++|++||.|.+|.|+++ +|||||+|.+.++|..|+..|++ ..|.|+.|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 56789999999999999999999999999999999875 59999999999999999998864 78999999999
Q ss_pred EeCCCCCC
Q 028027 129 LIPPEHVH 136 (215)
Q Consensus 129 ~a~~~~~~ 136 (215)
++.++...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99876554
No 90
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.3e-18 Score=127.31 Aligned_cols=77 Identities=12% Similarity=0.231 Sum_probs=70.6
Q ss_pred cEEEEcCC----CCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcC----HHH----HHHHHH--HhCCce
Q 028027 54 TVLYIGRI----PHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFND----PEV----AEVVAD--AMHGYL 119 (215)
Q Consensus 54 ~~l~V~nL----p~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~----~~~----a~~ai~--~l~g~~ 119 (215)
..|||+|| |+.+++.+|+.+|++||+|.+|.++.|+.||.++|||||+|.+ .+. |..|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 322 788888 789999
Q ss_pred eCCeEEEEEEe
Q 028027 120 LFEHILQVHLI 130 (215)
Q Consensus 120 l~g~~l~V~~a 130 (215)
|+|+.|+|.+-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999985
No 91
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.9e-19 Score=128.07 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--ceeCCeEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHG--YLLFEHILQV 127 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g--~~l~g~~l~V 127 (215)
..++++|||+|||+.+++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|..|+..|++ ..|.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 356789999999999999999999999999999999876 59999999999999999998874 6899999999
Q ss_pred EEeCCCCCCC
Q 028027 128 HLIPPEHVHP 137 (215)
Q Consensus 128 ~~a~~~~~~~ 137 (215)
.++.++....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9998766553
No 92
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=131.96 Aligned_cols=84 Identities=18% Similarity=0.272 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
.+....++|||+|||+.+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345677999999999999999999999999999886666666699999999999999999999998 9999999999999
Q ss_pred EEeCC
Q 028027 128 HLIPP 132 (215)
Q Consensus 128 ~~a~~ 132 (215)
.++.+
T Consensus 99 ~~a~~ 103 (124)
T 1wel_A 99 HPITK 103 (124)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99854
No 93
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2e-18 Score=122.54 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh--CCceeCCeEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM--HGYLLFEHILQVH 128 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l--~g~~l~g~~l~V~ 128 (215)
.+.++|||+|||+.+++++|+.+|++||.|..|.++.+ +|||||+|.+.++|..|+..| ++..|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 56789999999999999999999999999999988865 699999999999999999977 4678999999999
Q ss_pred EeCCCCCC
Q 028027 129 LIPPEHVH 136 (215)
Q Consensus 129 ~a~~~~~~ 136 (215)
++.++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 99876554
No 94
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=122.24 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.+.++|||+|||+.+++++|+++|++||.| .++.+ .+|.++|||||+|.+.++|+.|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 567999999999999999999999999987 56666 58999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 028027 131 PPEHV 135 (215)
Q Consensus 131 ~~~~~ 135 (215)
.+...
T Consensus 89 ~~~~~ 93 (101)
T 2fc9_A 89 GPRGS 93 (101)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87644
No 95
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=124.27 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+++++|+++|++||.+ .|.|+.++ +|+++|||||+|.+.++|+.|| .+|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 456899999999999999999999999955 99999997 9999999999999999999999 57999999999999998
Q ss_pred CCCCC
Q 028027 131 PPEHV 135 (215)
Q Consensus 131 ~~~~~ 135 (215)
.+...
T Consensus 90 ~~~~~ 94 (102)
T 1wez_A 90 STAGT 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76553
No 96
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.1e-18 Score=122.01 Aligned_cols=84 Identities=24% Similarity=0.379 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+.+++++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999874 677888888999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9887654
No 97
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-19 Score=129.34 Aligned_cols=88 Identities=23% Similarity=0.369 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+.+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35678999999999999999999999999984432222222788999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 028027 130 IPPEHVHP 137 (215)
Q Consensus 130 a~~~~~~~ 137 (215)
+.+.....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 98865543
No 98
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.6e-19 Score=128.90 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCe-eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAI-KRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v-~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
.+.++|||+|||+.+++++|+++|+.||.| ..|.|+.++ +|.++|||||+|.+.++|+.||.. |+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 567899999999999999999999999999 899999998 999999999999999999999976 99999999999999
Q ss_pred eCCCC
Q 028027 130 IPPEH 134 (215)
Q Consensus 130 a~~~~ 134 (215)
+.+..
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87653
No 99
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=119.53 Aligned_cols=80 Identities=25% Similarity=0.458 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+++++++|+++|++||.|..|.++ +|||||+|.+.++|+.|+..|||..|+|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3567999999999999999999999999999999987 47999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 028027 130 IPPEHVHP 137 (215)
Q Consensus 130 a~~~~~~~ 137 (215)
+.+.....
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98866543
No 100
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=1.1e-18 Score=127.18 Aligned_cols=82 Identities=11% Similarity=0.174 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCC---eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGA---IKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l 125 (215)
+....++|||+|||+++|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|+.||. ||+..|+|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999999 89999999974 9999999999999999999998 99999999999
Q ss_pred EEEEeCC
Q 028027 126 QVHLIPP 132 (215)
Q Consensus 126 ~V~~a~~ 132 (215)
.|.++.+
T Consensus 91 ~V~~a~~ 97 (118)
T 2db1_A 91 EVFKSHR 97 (118)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9999854
No 101
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=122.99 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC-----eE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE-----HI 124 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g-----~~ 124 (215)
....++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|+.||..|||..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 356789999999999999999999999999999999876 799999999999999999999999999 99
Q ss_pred EEEEEeCCCCCC
Q 028027 125 LQVHLIPPEHVH 136 (215)
Q Consensus 125 l~V~~a~~~~~~ 136 (215)
|.|.++.++...
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999886544
No 102
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=5.6e-19 Score=121.24 Aligned_cols=75 Identities=9% Similarity=0.115 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
..+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|..|++.||+..++|+.|+|.+|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3567899999999999999999999999999999865 5799999999999999999999999999999999998
Q ss_pred C
Q 028027 131 P 131 (215)
Q Consensus 131 ~ 131 (215)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 103
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=122.46 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCce--eCCeEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL--LFEHILQVH 128 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~--l~g~~l~V~ 128 (215)
.++++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+|.+.++|..|+..|++.. |.|+.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 56789999999999999999999999999999999854 5899999999999999999999875 889999999
Q ss_pred EeCCCC
Q 028027 129 LIPPEH 134 (215)
Q Consensus 129 ~a~~~~ 134 (215)
+++++.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998754
No 104
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=129.52 Aligned_cols=82 Identities=20% Similarity=0.287 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQ----AFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~ 126 (215)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +|.++|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 456899999999999999876 6999999999987743 788999999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q 028027 127 VHLIPPEHV 135 (215)
Q Consensus 127 V~~a~~~~~ 135 (215)
|.|+.++..
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999987643
No 105
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=120.49 Aligned_cols=79 Identities=20% Similarity=0.411 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC--CeEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF--EHILQVH 128 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~--g~~l~V~ 128 (215)
.+.++|||+|||+.+++++|+++|++||.|..|.+..+ +|||||+|.+.++|+.|+..|||..|. |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45689999999999999999999999999999998754 589999999999999999999999999 9999999
Q ss_pred EeCCCCC
Q 028027 129 LIPPEHV 135 (215)
Q Consensus 129 ~a~~~~~ 135 (215)
++.++..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9987643
No 106
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=4.5e-19 Score=132.49 Aligned_cols=83 Identities=12% Similarity=0.186 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCC---eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGA---IKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 124 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~ 124 (215)
++....++|||+|||+++|+++|+++|++||. |..|.|++++. |+++|||||+|.+.++|+.||. ||+..|+|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 44567899999999999999999999999999 89999999985 9999999999999999999998 9999999999
Q ss_pred EEEEEeCC
Q 028027 125 LQVHLIPP 132 (215)
Q Consensus 125 l~V~~a~~ 132 (215)
|.|.++.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99998753
No 107
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=6e-19 Score=123.69 Aligned_cols=83 Identities=18% Similarity=0.418 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQ----AFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l 125 (215)
..+.++|||+|||+.+++++|+ .+|++||.|..|.++. +|.++|||||+|.+.++|..|+..|||..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3567899999999999999999 9999999999998873 67888999999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q 028027 126 QVHLIPPEHV 135 (215)
Q Consensus 126 ~V~~a~~~~~ 135 (215)
.|.++.+...
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987643
No 108
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=4.8e-18 Score=120.62 Aligned_cols=82 Identities=24% Similarity=0.423 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.+.++|||+|||+.+++++|+++|++||.|..|.++ ++||||+|.+.++|..|+..||+..|+|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456899999999999999999999999999999886 359999999999999999999999999999999999
Q ss_pred CCCCCCCCCc
Q 028027 131 PPEHVHPKLW 140 (215)
Q Consensus 131 ~~~~~~~~~~ 140 (215)
.+........
T Consensus 81 ~~~~~~~~~~ 90 (103)
T 2dgu_A 81 KPPDQKRKER 90 (103)
T ss_dssp CCCCCCCCCC
T ss_pred CCCcccchhh
Confidence 8876654443
No 109
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=123.93 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc--eeCCeEEEE
Q 028027 51 NKATVLYIGRIPH-GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY--LLFEHILQV 127 (215)
Q Consensus 51 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~--~l~g~~l~V 127 (215)
.++++|||+|||+ .+++++|+.+|++||.|.+|.|++++ |||||+|.+.++|..|+..||+. .|.|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 99999999999999999999998763 79999999999999999999864 599999999
Q ss_pred EEeCCCC
Q 028027 128 HLIPPEH 134 (215)
Q Consensus 128 ~~a~~~~ 134 (215)
.++....
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998643
No 110
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-19 Score=121.31 Aligned_cols=73 Identities=23% Similarity=0.432 Sum_probs=68.1
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCe-EE
Q 028027 53 ATVLYIGRIPHGF------YEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-IL 125 (215)
Q Consensus 53 ~~~l~V~nLp~~~------te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~-~l 125 (215)
+++|||+|||+.+ ++++|+.+|++||.|..|.+++ .+|.++|||||+|.+.++|..|+..|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 7899999999999999999883 5899999999999999999999999999999999 88
Q ss_pred EE
Q 028027 126 QV 127 (215)
Q Consensus 126 ~V 127 (215)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 111
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=9e-19 Score=122.63 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
....+.++|||+|||+.+++++|+.+|++||.|..+ ..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 334567999999999999999999999999988766 237899999999999999999999999999999999999
Q ss_pred EEeCCCCC
Q 028027 128 HLIPPEHV 135 (215)
Q Consensus 128 ~~a~~~~~ 135 (215)
.++.++..
T Consensus 86 ~~a~~~~~ 93 (96)
T 1fjc_A 86 YYTGEKGG 93 (96)
T ss_dssp EECSSSCC
T ss_pred EEcCCCCC
Confidence 99987644
No 112
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=2e-18 Score=123.98 Aligned_cols=80 Identities=25% Similarity=0.413 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
.....++|||+|||+.+++++|+.+|++||.|..|.++ +|||||+|.+.++|..|+..|||..++|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34677999999999999999999999999999999987 5899999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 028027 129 LIPPEHVH 136 (215)
Q Consensus 129 ~a~~~~~~ 136 (215)
++.+...+
T Consensus 99 ~a~~~~~r 106 (108)
T 2jvo_A 99 YSKLPAKR 106 (108)
T ss_dssp SCSCCC--
T ss_pred EecCCCCC
Confidence 99876543
No 113
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.7e-18 Score=129.79 Aligned_cols=101 Identities=17% Similarity=0.281 Sum_probs=86.3
Q ss_pred CCcccCCCCCCCCC---CCCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHH
Q 028027 31 DFLPLEGGPGRKLT---EEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEV 107 (215)
Q Consensus 31 d~~~~~g~p~r~~~---~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~ 107 (215)
++..+.|++++... .........++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++
T Consensus 62 ~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 141 (166)
T 3md3_A 62 NGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 141 (166)
T ss_dssp TTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHH
T ss_pred CCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 34445555444322 222344667899999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEEeC
Q 028027 108 AEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 108 a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
|..|+..|||..++|+.|.|.|++
T Consensus 142 A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 142 AQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHHhCCCccCCcEEEEEecC
Confidence 999999999999999999999985
No 114
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=6.4e-18 Score=117.48 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+.+++++|+++|++||.|..|.+++ +||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45679999999999999999999999999999999873 4999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.+....
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9876554
No 115
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-19 Score=128.38 Aligned_cols=82 Identities=15% Similarity=0.222 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCC---eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGA---IKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l 125 (215)
+....++|||+|||+++++++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|..||. +|+..|+|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3467789999999999999999999999998 89999999985 9999999999999999999998 99999999999
Q ss_pred EEEEeCC
Q 028027 126 QVHLIPP 132 (215)
Q Consensus 126 ~V~~a~~ 132 (215)
.|.++.+
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9998764
No 116
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=120.26 Aligned_cols=80 Identities=19% Similarity=0.393 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+.+++++|+.+|++||.|. +.++. +.++|||||+|.+.++|+.|+..|||..|+|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35578999999999999999999999999996 66664 35789999999999999999999999999999999999
Q ss_pred eCCCC
Q 028027 130 IPPEH 134 (215)
Q Consensus 130 a~~~~ 134 (215)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98754
No 117
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=2.7e-20 Score=135.15 Aligned_cols=88 Identities=17% Similarity=0.316 Sum_probs=81.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR--------LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~ 121 (215)
..+.++|||+|||+.+++++|+++|++||.|.. |.++.++.+|.++|||||+|.+.++|..|+..|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 356789999999999999999999999999998 899999889999999999999999999999999999999
Q ss_pred CeEEEEEEeCCCCCCC
Q 028027 122 EHILQVHLIPPEHVHP 137 (215)
Q Consensus 122 g~~l~V~~a~~~~~~~ 137 (215)
|+.|.|.++.++....
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999998876543
No 118
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.9e-18 Score=118.09 Aligned_cols=79 Identities=11% Similarity=0.306 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+.+++++|+.+|++||.|..|.+++ +||||+|.+.++|+.|+..|||..|+|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999973 4999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.+....
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 119
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.7e-18 Score=122.39 Aligned_cols=81 Identities=23% Similarity=0.380 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+.+++++|+.+|++||.|..|.++.+ +|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 456789999999999999999999999999999999876 58999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.+....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9876543
No 120
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=7.9e-19 Score=142.19 Aligned_cols=81 Identities=20% Similarity=0.305 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCC--CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFG--AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..++|||+|||+++|+++|+++|++|| .|..|.|++++.+|+++|||||+|.+.++|+.||..||+..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eCC
Q 028027 130 IPP 132 (215)
Q Consensus 130 a~~ 132 (215)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 121
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=2.5e-18 Score=124.33 Aligned_cols=80 Identities=20% Similarity=0.423 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
..+++|||+|||+.+++++|+.+|++||.|..|.++.+ +.++|||||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 56789999999999999999999999999999999865 455899999999999999999999999999999999998
Q ss_pred CCC
Q 028027 131 PPE 133 (215)
Q Consensus 131 ~~~ 133 (215)
.+.
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 654
No 122
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=122.67 Aligned_cols=78 Identities=28% Similarity=0.496 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCCC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~~ 133 (215)
++|||+|||+++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|..|+..|||..++|+.|.|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 57999999999999999999999999999999876 6799999999999999999999999999999999999886
Q ss_pred CCC
Q 028027 134 HVH 136 (215)
Q Consensus 134 ~~~ 136 (215)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 123
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.76 E-value=2.1e-18 Score=132.34 Aligned_cols=101 Identities=22% Similarity=0.393 Sum_probs=87.2
Q ss_pred CCCcccCCCCCCCCCCCC-CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHH
Q 028027 30 ADFLPLEGGPGRKLTEEK-PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVA 108 (215)
Q Consensus 30 ~d~~~~~g~p~r~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a 108 (215)
.++..+.|++++...... .+....++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|
T Consensus 70 ~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A 149 (172)
T 2g4b_A 70 FDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 149 (172)
T ss_dssp GTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHH
T ss_pred hCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 345556666655443322 2335578999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEEe
Q 028027 109 EVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 109 ~~ai~~l~g~~l~g~~l~V~~a 130 (215)
..|+..|||..++|+.|.|.+|
T Consensus 150 ~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 150 DQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHcCCCEECCeEEEEEeC
Confidence 9999999999999999999987
No 124
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=2.8e-19 Score=119.56 Aligned_cols=75 Identities=16% Similarity=0.384 Sum_probs=71.3
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 55 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
+|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+. +++..++|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998899999999999999999999997 4899999999999875
No 125
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=2e-18 Score=122.06 Aligned_cols=77 Identities=26% Similarity=0.362 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+++++++|+.+|++||.|.++.+.. ++|||||+|.+.++|..|+..|||..++|+.|+|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4568999999999999999999999999999999873 4699999999999999999999999999999999998
Q ss_pred CCC
Q 028027 131 PPE 133 (215)
Q Consensus 131 ~~~ 133 (215)
.++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 126
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=6.3e-18 Score=118.97 Aligned_cols=78 Identities=22% Similarity=0.453 Sum_probs=71.1
Q ss_pred CCCCCCcEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 028027 48 PLVNKATVLYIGRIPH-GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (215)
Q Consensus 48 ~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~ 126 (215)
.+..+.++|||+|||+ .+++++|+.+|++||.|..|.+. +|||||+|.+.++|..|+..|||..++|+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3446789999999998 99999999999999999999883 68999999999999999999999999999999
Q ss_pred EEEeCCC
Q 028027 127 VHLIPPE 133 (215)
Q Consensus 127 V~~a~~~ 133 (215)
|.++.+.
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998764
No 127
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=116.54 Aligned_cols=76 Identities=25% Similarity=0.451 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh-CCceeCCeEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM-HGYLLFEHILQVH 128 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l-~g~~l~g~~l~V~ 128 (215)
....++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..| +|..++|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 356789999999999999999999999999999999874 589999999999999999988 9999999999999
Q ss_pred EeC
Q 028027 129 LIP 131 (215)
Q Consensus 129 ~a~ 131 (215)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 128
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.5e-18 Score=119.83 Aligned_cols=79 Identities=24% Similarity=0.468 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.+.++|||+|||+.+++++|+.+|++||.|..|.++.+ +|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 56789999999999999999999999999999999865 589999999999999999999999999999999999
Q ss_pred CCCCC
Q 028027 131 PPEHV 135 (215)
Q Consensus 131 ~~~~~ 135 (215)
.+...
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 87543
No 129
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=4.5e-18 Score=135.87 Aligned_cols=84 Identities=21% Similarity=0.330 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.+.++|||+|||+++++++|+++|++||.|.+|.|++++.+|.++|||||+|.+.++|..|+..+|+..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 028027 131 PPEH 134 (215)
Q Consensus 131 ~~~~ 134 (215)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 6543
No 130
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=122.85 Aligned_cols=79 Identities=13% Similarity=0.319 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.+.++|||+|||+.+++++|+++|+.| .|..|.|+.++ +|+++|||||+|.+.++|+.|| .||+..|+|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 445799999999999999999999999 89999999997 5999999999999999999999 69999999999999887
Q ss_pred CC
Q 028027 131 PP 132 (215)
Q Consensus 131 ~~ 132 (215)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 131
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.8e-18 Score=121.24 Aligned_cols=80 Identities=11% Similarity=0.171 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc--eeCCeEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY--LLFEHILQVH 128 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~--~l~g~~l~V~ 128 (215)
.+.++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..|++. .|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999999999998764 589999999999999999988764 5999999999
Q ss_pred EeCCCCCC
Q 028027 129 LIPPEHVH 136 (215)
Q Consensus 129 ~a~~~~~~ 136 (215)
++.++...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99876544
No 132
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-17 Score=116.21 Aligned_cols=78 Identities=22% Similarity=0.418 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccC--CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQF--GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
....++|||+|||+.+++++|+.+|++| |.|..|.++ +|||||+|.+.++|..|+..|||..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3567899999999999999999999999 999998764 479999999999999999999999999999999
Q ss_pred EEeCCCCC
Q 028027 128 HLIPPEHV 135 (215)
Q Consensus 128 ~~a~~~~~ 135 (215)
.++.+...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 133
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=1.1e-17 Score=120.20 Aligned_cols=77 Identities=14% Similarity=0.387 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 50 VNKATVLYIGRIPHG-FYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
....++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.++|+.|+..|||..|+|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345689999999999 999999999999999999988 46899999999999999999999999999999999
Q ss_pred EeCCCC
Q 028027 129 LIPPEH 134 (215)
Q Consensus 129 ~a~~~~ 134 (215)
++.+..
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997543
No 134
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=2.4e-18 Score=124.23 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
...++|||+|||+.+++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|+.|+..|||..|+|+.|.|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4568999999999999999999999999 899998853 34789999999999999999999999999999999999
Q ss_pred eCCC
Q 028027 130 IPPE 133 (215)
Q Consensus 130 a~~~ 133 (215)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8654
No 135
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=1.1e-17 Score=127.36 Aligned_cols=83 Identities=28% Similarity=0.552 Sum_probs=79.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~ 132 (215)
.++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..++|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CCC
Q 028027 133 EHV 135 (215)
Q Consensus 133 ~~~ 135 (215)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 136
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=1.2e-18 Score=123.35 Aligned_cols=82 Identities=21% Similarity=0.441 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
..+++|||+|||+++++++|+.+|++||.|..|.++.++ +|.++|||||+|.+.++|+.|+. ++..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 456899999999999999999999999999999999998 99999999999999999999997 999999999999998
Q ss_pred CCCCC
Q 028027 131 PPEHV 135 (215)
Q Consensus 131 ~~~~~ 135 (215)
.+...
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 76543
No 137
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.2e-18 Score=119.45 Aligned_cols=79 Identities=22% Similarity=0.469 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 50 VNKATVLYIGRIPH-GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 50 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
..+.++|||+|||+ .+++++|+.+|++||.|..|.+. +|||||+|.+.++|..|+..|||..+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35678999999999 99999999999999999999884 5899999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 028027 129 LIPPEHVH 136 (215)
Q Consensus 129 ~a~~~~~~ 136 (215)
++.+....
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876543
No 138
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.75 E-value=7.8e-19 Score=131.92 Aligned_cols=86 Identities=19% Similarity=0.324 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEE------EEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRL------RIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 123 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v------~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~ 123 (215)
..+.++|||+|||+.+++++|+.+|++||.|..+ .+.. ..+|.++|||||+|.+.++|..|+..|||..|+|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 3567899999999999999999999999998764 1111 23789999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCC
Q 028027 124 ILQVHLIPPEHVH 136 (215)
Q Consensus 124 ~l~V~~a~~~~~~ 136 (215)
.|.|.++.+...+
T Consensus 121 ~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 PMVVQFARSARPK 133 (143)
T ss_dssp ECEEEECCCSCC-
T ss_pred EEEEEECCCCCCc
Confidence 9999999775443
No 139
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=9.2e-18 Score=128.10 Aligned_cols=84 Identities=25% Similarity=0.434 Sum_probs=79.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
+.++|||+|||+++++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|..|+..|+|..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 028027 132 PEHV 135 (215)
Q Consensus 132 ~~~~ 135 (215)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7643
No 140
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=7.8e-18 Score=127.41 Aligned_cols=81 Identities=25% Similarity=0.433 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
.....++|||+|||+.+++++|+.+|++||.|..|.++.+ ++|||||+|.+.++|..|+..|||..|+|+.|+|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999999876 47999999999999999999999999999999999
Q ss_pred EeCCCC
Q 028027 129 LIPPEH 134 (215)
Q Consensus 129 ~a~~~~ 134 (215)
++.++.
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 997753
No 141
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7e-18 Score=117.43 Aligned_cols=79 Identities=15% Similarity=0.338 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCC-eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC-ceeCCeEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGA-IKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHG-YLLFEHILQVH 128 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g-~~l~g~~l~V~ 128 (215)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|..|+..||| ..|+|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45689999999999999999999999999 6666552 368999999999999999999999 99999999999
Q ss_pred EeCCCCCC
Q 028027 129 LIPPEHVH 136 (215)
Q Consensus 129 ~a~~~~~~ 136 (215)
++.++..+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99886554
No 142
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.74 E-value=7.7e-18 Score=131.24 Aligned_cols=85 Identities=18% Similarity=0.343 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+.+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3557899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred eCCCCC
Q 028027 130 IPPEHV 135 (215)
Q Consensus 130 a~~~~~ 135 (215)
+.+...
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 976543
No 143
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5e-18 Score=122.39 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+++++|+.+|++||.|..|.++. ++|||||+|.+.++|+.|+..|||..|+|+.|.|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999998874 4589999999999999999999999999999999999
Q ss_pred CCCC
Q 028027 131 PPEH 134 (215)
Q Consensus 131 ~~~~ 134 (215)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7643
No 144
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.1e-18 Score=121.14 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--ceeCCeEEEE
Q 028027 51 NKATVLYIGRIPHG-FYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHG--YLLFEHILQV 127 (215)
Q Consensus 51 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g--~~l~g~~l~V 127 (215)
.++++|||+|||++ +++++|+++|++||.|.+|.|++. +|||||+|.+.++|..|+..|++ ..|.|+.|+|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 45789999999998 999999999999999999999754 58999999999999999998864 5699999999
Q ss_pred EEeCCCCC
Q 028027 128 HLIPPEHV 135 (215)
Q Consensus 128 ~~a~~~~~ 135 (215)
.++.....
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99976543
No 145
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=1.7e-17 Score=131.77 Aligned_cols=86 Identities=22% Similarity=0.436 Sum_probs=81.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 028027 131 PPEHVH 136 (215)
Q Consensus 131 ~~~~~~ 136 (215)
.+....
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 876543
No 146
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=115.11 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+++++++|+.+|++||.|..| +.++.+|. ||||+|.+.++|..|+. |||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345799999999999999999999999999987 55555665 99999999999999999 9999999999999988
Q ss_pred CCCCCC
Q 028027 131 PPEHVH 136 (215)
Q Consensus 131 ~~~~~~ 136 (215)
.++...
T Consensus 80 ~~~~~~ 85 (94)
T 2e5g_A 80 EQKEFQ 85 (94)
T ss_dssp CCSCCC
T ss_pred CcCCCC
Confidence 765443
No 147
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=117.03 Aligned_cols=80 Identities=20% Similarity=0.377 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEE-EEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRL-RIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
...++|||+|||+.+++++|+.+|++||.|..| .++.++.+| .|||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999999999999999 588876554 399999999999999999999999999999999
Q ss_pred eCCCC
Q 028027 130 IPPEH 134 (215)
Q Consensus 130 a~~~~ 134 (215)
+.+..
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98763
No 148
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-18 Score=125.07 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCe----eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAI----KRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v----~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~ 126 (215)
.+.++|||+|||+++|+++|+++|++||.| ..|.|+.+. +|+++|||||+|.+.++|+.||.. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 567899999999999999999999999975 689999985 999999999999999999999975 99999999999
Q ss_pred EEEeCC
Q 028027 127 VHLIPP 132 (215)
Q Consensus 127 V~~a~~ 132 (215)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988743
No 149
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.73 E-value=2.6e-17 Score=144.88 Aligned_cols=85 Identities=19% Similarity=0.360 Sum_probs=80.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+|+++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 028027 131 PPEHV 135 (215)
Q Consensus 131 ~~~~~ 135 (215)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87543
No 150
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.72 E-value=3.6e-17 Score=128.13 Aligned_cols=85 Identities=24% Similarity=0.463 Sum_probs=80.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 028027 131 PPEHV 135 (215)
Q Consensus 131 ~~~~~ 135 (215)
.+...
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 151
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=2.4e-18 Score=128.96 Aligned_cols=84 Identities=15% Similarity=0.183 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+++|+++|+++|++|| |..|.|+.++ +|+++|||||+|.+.++|+.|| .+|+..|+|+.|.|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 35678999999999999999999999999 6799999997 5999999999999999999999 7899999999999999
Q ss_pred eCCCCCC
Q 028027 130 IPPEHVH 136 (215)
Q Consensus 130 a~~~~~~ 136 (215)
+.+....
T Consensus 120 a~~~~~~ 126 (139)
T 2hgn_A 120 NSTTGAS 126 (139)
T ss_dssp CCCSCC-
T ss_pred CCCCCCC
Confidence 8776543
No 152
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=2.8e-17 Score=128.58 Aligned_cols=84 Identities=17% Similarity=0.352 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|..|+.. ++..++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 35678999999999999999999999999999999999988999999999999999999999975 99999999999999
Q ss_pred eCCCC
Q 028027 130 IPPEH 134 (215)
Q Consensus 130 a~~~~ 134 (215)
+.+..
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 87654
No 153
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-16 Score=112.26 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|| .+++++|+.+|++||.|..|.+. .++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46789999996 89999999999999999999884 45689999999999999999999999999999999999
Q ss_pred CCCCCC
Q 028027 131 PPEHVH 136 (215)
Q Consensus 131 ~~~~~~ 136 (215)
.+....
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876543
No 154
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=2.6e-17 Score=125.57 Aligned_cols=100 Identities=21% Similarity=0.342 Sum_probs=85.0
Q ss_pred CCcccCCCCCCCCCCC-CCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHH
Q 028027 31 DFLPLEGGPGRKLTEE-KPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAE 109 (215)
Q Consensus 31 d~~~~~g~p~r~~~~~-~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~ 109 (215)
++..+.|++++..... .......++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.
T Consensus 66 ~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 66 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp TTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 4445556655443322 223456789999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHhCCceeCC--eEEEEEEe
Q 028027 110 VVADAMHGYLLFE--HILQVHLI 130 (215)
Q Consensus 110 ~ai~~l~g~~l~g--~~l~V~~a 130 (215)
.|+..|||..++| +.|.|.+|
T Consensus 146 ~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 146 EAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999988 99999885
No 155
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=1e-17 Score=123.44 Aligned_cols=81 Identities=19% Similarity=0.292 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhccCCCee--EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 028027 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIK--RLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (215)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~--~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~ 126 (215)
+....++|||+|||+.+|+++|+++|++| .|. .|.|+.++. |+++|||||+|.+.++|+.||. +++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999999999 566 899999985 9999999999999999999997 478999999999
Q ss_pred EEEeCC
Q 028027 127 VHLIPP 132 (215)
Q Consensus 127 V~~a~~ 132 (215)
|..+.+
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998754
No 156
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.72 E-value=3.6e-17 Score=113.30 Aligned_cols=77 Identities=23% Similarity=0.478 Sum_probs=63.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCce--eCCeEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL--LFEHILQV 127 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~--l~g~~l~V 127 (215)
..+.++|||+|||+++++++|+++|++||.|.+|.++.+ ++|||||+|.+.++|+. +++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 467899999999999999999999999999999999874 68999999999999883 45654 56999999
Q ss_pred EEeCCCCC
Q 028027 128 HLIPPEHV 135 (215)
Q Consensus 128 ~~a~~~~~ 135 (215)
.++.++..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99987643
No 157
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=3.5e-17 Score=125.32 Aligned_cols=82 Identities=11% Similarity=0.262 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC--eEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE--HILQVH 128 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g--~~l~V~ 128 (215)
....+|||+||++.+++++|+++|++||.|.+|.+.... ++|||||+|.+.++|+.|+..|||..|.| +.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 445679999999999999999999999999999986532 56899999999999999999999999965 999999
Q ss_pred EeCCCCCC
Q 028027 129 LIPPEHVH 136 (215)
Q Consensus 129 ~a~~~~~~ 136 (215)
|+++....
T Consensus 120 ~Ak~~~l~ 127 (164)
T 1sjr_A 120 FSKLTSLN 127 (164)
T ss_dssp ECSSSSCC
T ss_pred EecCCccc
Confidence 99987543
No 158
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=1.2e-17 Score=127.47 Aligned_cols=98 Identities=23% Similarity=0.400 Sum_probs=84.2
Q ss_pred cCCCCCCCCCCCC-CCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 028027 35 LEGGPGRKLTEEK-PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113 (215)
Q Consensus 35 ~~g~p~r~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~ 113 (215)
+.|++++...... ......++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+.
T Consensus 68 ~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 68 LDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp ETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred cCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 4555554433221 123456799999999999999999999999999999999998899999999999999999999997
Q ss_pred HhCCceeCCeEEEEEEeCCC
Q 028027 114 AMHGYLLFEHILQVHLIPPE 133 (215)
Q Consensus 114 ~l~g~~l~g~~l~V~~a~~~ 133 (215)
++|..++|+.|.|.++.|+
T Consensus 148 -~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 148 -NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp -CSEECSSSSCEEEEECCCC
T ss_pred -CCCEEeCCeEEEEeecCCC
Confidence 8999999999999999875
No 159
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=3.5e-17 Score=112.90 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
..++|||+|||+.+++++|+++|++| .|..+.+. .++|||||+|.+.++|+.|+..|||..++|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99999884 567999999999999999999999999999999999986
Q ss_pred CCC
Q 028027 132 PEH 134 (215)
Q Consensus 132 ~~~ 134 (215)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 643
No 160
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=4.8e-17 Score=127.20 Aligned_cols=86 Identities=17% Similarity=0.373 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+++++|+++|+.||.|..|.++.+..+|.++|||||+|.+.++|..|+.. +|..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 4568999999999999999999999999999999999988999999999999999999999976 899999999999999
Q ss_pred CCCCCCC
Q 028027 131 PPEHVHP 137 (215)
Q Consensus 131 ~~~~~~~ 137 (215)
.++....
T Consensus 181 ~~k~~~~ 187 (196)
T 1l3k_A 181 LSKQEMA 187 (196)
T ss_dssp C------
T ss_pred CChhHhc
Confidence 8876543
No 161
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=1.2e-16 Score=117.98 Aligned_cols=80 Identities=13% Similarity=0.304 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccE-EEEEEcCHHHHHHHHHHhCCceeCC--eEEEEE
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHF-GFIEFNDPEVAEVVADAMHGYLLFE--HILQVH 128 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~-afV~F~~~~~a~~ai~~l~g~~l~g--~~l~V~ 128 (215)
..-.|||+||++.+|+++|+++|++||.|.+|.+.... +|| |||+|.+.++|..|+..|||..|.| +.|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34568899999999999999999999999999887642 577 9999999999999999999999988 999999
Q ss_pred EeCCCCCC
Q 028027 129 LIPPEHVH 136 (215)
Q Consensus 129 ~a~~~~~~ 136 (215)
|+++....
T Consensus 102 ~ak~~~l~ 109 (130)
T 3zzy_A 102 FSKLTSLN 109 (130)
T ss_dssp ECSCSSCC
T ss_pred ecCCCcee
Confidence 99887543
No 162
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=3.6e-17 Score=124.40 Aligned_cols=100 Identities=25% Similarity=0.358 Sum_probs=83.8
Q ss_pred CCcccCCCCCCCCCCC-CCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHH
Q 028027 31 DFLPLEGGPGRKLTEE-KPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAE 109 (215)
Q Consensus 31 d~~~~~g~p~r~~~~~-~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~ 109 (215)
++..+.|++++..... .......++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.
T Consensus 65 ~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~ 144 (167)
T 1fxl_A 65 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 144 (167)
T ss_dssp TTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHH
Confidence 4455566655443322 223356789999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHhCCceeCCeE--EEEEEe
Q 028027 110 VVADAMHGYLLFEHI--LQVHLI 130 (215)
Q Consensus 110 ~ai~~l~g~~l~g~~--l~V~~a 130 (215)
.|+..|||..++|+. |.|.||
T Consensus 145 ~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 145 EAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCccCCCccceEEEeC
Confidence 999999999999975 788775
No 163
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=6.6e-17 Score=122.81 Aligned_cols=81 Identities=19% Similarity=0.449 Sum_probs=75.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCCC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~~ 133 (215)
++|||+|||+++++++|+++|++||.|.+|.++.++ +|.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999997 6889999999999999999999999999999999999998765
Q ss_pred CC
Q 028027 134 HV 135 (215)
Q Consensus 134 ~~ 135 (215)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 164
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1.7e-16 Score=116.52 Aligned_cols=77 Identities=16% Similarity=0.268 Sum_probs=68.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccE-EEEEEcCHHHHHHHHHHhCCceeCC--eEEEEEEe
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHF-GFIEFNDPEVAEVVADAMHGYLLFE--HILQVHLI 130 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~-afV~F~~~~~a~~ai~~l~g~~l~g--~~l~V~~a 130 (215)
-.|||+||++.+++++|+.+|++||.|..|.+... + || |||+|.+.++|..|+..|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~----Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--N----GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--S----SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--C----CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34689999999999999999999999999998652 2 76 9999999999999999999999987 68999999
Q ss_pred CCCCCC
Q 028027 131 PPEHVH 136 (215)
Q Consensus 131 ~~~~~~ 136 (215)
++....
T Consensus 100 k~~~l~ 105 (124)
T 2e5i_A 100 RPTRLN 105 (124)
T ss_dssp SCSCCC
T ss_pred cCCcce
Confidence 887644
No 165
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.5e-17 Score=117.25 Aligned_cols=79 Identities=14% Similarity=0.282 Sum_probs=70.6
Q ss_pred CCCcEEEE--cCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee-----CCe
Q 028027 51 NKATVLYI--GRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL-----FEH 123 (215)
Q Consensus 51 ~~~~~l~V--~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l-----~g~ 123 (215)
.+.++||| |||++.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|+.|+..|||..+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45688999 779999999999999999999999987643 68999999999999999999999988 689
Q ss_pred EEEEEEeCCCCC
Q 028027 124 ILQVHLIPPEHV 135 (215)
Q Consensus 124 ~l~V~~a~~~~~ 135 (215)
.|.|.++...+.
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 999999976544
No 166
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.70 E-value=1.9e-16 Score=130.16 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=83.7
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHH
Q 028027 30 ADFLPLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAE 109 (215)
Q Consensus 30 ~d~~~~~g~p~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~ 109 (215)
.++..+.|+++++... .+.++|||+|||+.+++++|+++|+.||.|..|.++.+. +|.++|||||+|.+.++|.
T Consensus 78 l~g~~i~g~~l~v~~a-----~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~ 151 (261)
T 3sde_A 78 LDGTILKSRPLRIRFA-----THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPAR 151 (261)
T ss_dssp HTTCEETTEECEEEEC-----CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHH
T ss_pred cCCcEECCceeEeeec-----ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHH
Confidence 3455566666654433 346899999999999999999999999999999999994 9999999999999999999
Q ss_pred HHHHHhC-CceeC---CeEEEEEEeCCCC
Q 028027 110 VVADAMH-GYLLF---EHILQVHLIPPEH 134 (215)
Q Consensus 110 ~ai~~l~-g~~l~---g~~l~V~~a~~~~ 134 (215)
.|+..|| +..+. |++|.|.++.+..
T Consensus 152 ~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 152 KALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9999994 55555 9999999987653
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=8.6e-17 Score=128.39 Aligned_cols=81 Identities=25% Similarity=0.421 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+++++|+++|+.||.|..|.|+++. +.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 101 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 101 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 356789999999999999999999999999999999984 558999999999999999999999999999999999998
Q ss_pred CCC
Q 028027 131 PPE 133 (215)
Q Consensus 131 ~~~ 133 (215)
.++
T Consensus 179 ~~~ 181 (213)
T 4f02_A 179 KSR 181 (213)
T ss_dssp CCH
T ss_pred CCC
Confidence 654
No 168
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=4.3e-17 Score=118.15 Aligned_cols=78 Identities=13% Similarity=0.194 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeE-----E
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI-----L 125 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~-----l 125 (215)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|+.||..|||..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999999765 89999999999999999999999999988 7
Q ss_pred EEEEeCCCCC
Q 028027 126 QVHLIPPEHV 135 (215)
Q Consensus 126 ~V~~a~~~~~ 135 (215)
.|..+.+...
T Consensus 87 ~v~~~~~~~~ 96 (115)
T 3beg_B 87 RVKVDGPRSP 96 (115)
T ss_dssp EEEECC----
T ss_pred EeccCCCCCC
Confidence 8887766543
No 169
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=118.14 Aligned_cols=79 Identities=18% Similarity=0.328 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCC---CCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKT---GQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~t---g~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
...++|||+|||+.+++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|+.|+..|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4568999999999999999999999999999 888887766 7999999999999999999999984 377887777
Q ss_pred EEeCC
Q 028027 128 HLIPP 132 (215)
Q Consensus 128 ~~a~~ 132 (215)
..+.+
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 65543
No 170
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=111.04 Aligned_cols=72 Identities=21% Similarity=0.343 Sum_probs=65.4
Q ss_pred cEEEEcCCCCCCcHHH----HHHHhccC-CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 54 TVLYIGRIPHGFYEKE----MQAFFSQF-GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~----L~~~F~~~-G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
+.|||+|||+.+++++ |+++|++| |.|.+| +| |+|||.|.+.++|..|++.|+|..+.|+.|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 4499999999999988 56899999 599998 44 999999999999999999999999999999999
Q ss_pred EeCCCCC
Q 028027 129 LIPPEHV 135 (215)
Q Consensus 129 ~a~~~~~ 135 (215)
+|+..+.
T Consensus 80 ~A~~~sd 86 (96)
T 2diu_A 80 FTPKNRE 86 (96)
T ss_dssp SSCCSCC
T ss_pred ecCCCcc
Confidence 9987654
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.68 E-value=2.4e-16 Score=125.44 Aligned_cols=79 Identities=11% Similarity=0.264 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCC-CCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 51 NKATVLYIGRIP-HGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 51 ~~~~~l~V~nLp-~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
.++++|||+||| +.+++++|+++|++||.|.+|.++.++ +|||||+|.+.++|+.|+..|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 356899999999 899999999999999999999998753 69999999999999999999999999999999999
Q ss_pred eCCCC
Q 028027 130 IPPEH 134 (215)
Q Consensus 130 a~~~~ 134 (215)
+....
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 87543
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=1.5e-16 Score=126.28 Aligned_cols=83 Identities=24% Similarity=0.393 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+++++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred CCC
Q 028027 131 PPE 133 (215)
Q Consensus 131 ~~~ 133 (215)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 543
No 173
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=2.8e-16 Score=120.96 Aligned_cols=98 Identities=18% Similarity=0.206 Sum_probs=80.6
Q ss_pred CCcccCCCCCCCCCC---CCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHH
Q 028027 31 DFLPLEGGPGRKLTE---EKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEV 107 (215)
Q Consensus 31 d~~~~~g~p~r~~~~---~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~ 107 (215)
++..+.|+++++... ........++|||+|||+.+++++|+++|++||.|..+ ..+|.++|||||+|.+.++
T Consensus 74 ~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~ 148 (175)
T 1fje_B 74 TGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEAD 148 (175)
T ss_dssp GGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHH
T ss_pred CCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHH
Confidence 344455554443222 22334567899999999999999999999999988766 3589999999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEEeCCC
Q 028027 108 AEVVADAMHGYLLFEHILQVHLIPPE 133 (215)
Q Consensus 108 a~~ai~~l~g~~l~g~~l~V~~a~~~ 133 (215)
|..|+..|||..|+|+.|.|.++.++
T Consensus 149 A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 149 AEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999875
No 174
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=6.1e-16 Score=110.43 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=73.1
Q ss_pred CCCcEEEEcCCCC-----CCcHHHHHHHhccCCCeeEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 028027 51 NKATVLYIGRIPH-----GFYEKEMQAFFSQFGAIKRLRIARNKKT-GQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 124 (215)
Q Consensus 51 ~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~v~~v~i~~~~~t-g~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~ 124 (215)
.++++|+|.||.. .-++++|++.|++||.|.+|.|++++.+ +.++|||||+|.+.++|..|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 2378999999999999999999998644 689999999999999999999999999999999
Q ss_pred EEEEEeCC
Q 028027 125 LQVHLIPP 132 (215)
Q Consensus 125 l~V~~a~~ 132 (215)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 175
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=2.6e-16 Score=120.63 Aligned_cols=80 Identities=28% Similarity=0.457 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC---CeEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF---EHILQV 127 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~---g~~l~V 127 (215)
...++|||+|||+.+++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|..|+..|||..+. |+.|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 467899999999999999999999999999999999996 7999999999999999999999999998766 499999
Q ss_pred EEeC
Q 028027 128 HLIP 131 (215)
Q Consensus 128 ~~a~ 131 (215)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9973
No 176
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.67 E-value=1.7e-16 Score=131.56 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=88.2
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHH
Q 028027 31 DFLPLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEV 110 (215)
Q Consensus 31 d~~~~~g~p~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ 110 (215)
++..+.|++++... ....++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..
T Consensus 78 ~~~~~~g~~i~v~~-----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 152 (284)
T 3smz_A 78 HQSRLRERELSVQL-----QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAAR 152 (284)
T ss_dssp TTCEETTEECEEEE-----CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCeeCCeEEEEEe-----cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHH
Confidence 44455666554432 2456899999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHhCCceeCCeEEEEEEeCCCCCC
Q 028027 111 VADAMHGYLLFEHILQVHLIPPEHVH 136 (215)
Q Consensus 111 ai~~l~g~~l~g~~l~V~~a~~~~~~ 136 (215)
|+..|+|..++|+.|.|.++.+....
T Consensus 153 A~~~l~~~~~~g~~i~v~~a~~~~~~ 178 (284)
T 3smz_A 153 AKSDLLGKPLGPRTLYVHWTDAGQLT 178 (284)
T ss_dssp HHHHHTTCEETTEECEEEECCGGGCC
T ss_pred HHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 99999999999999999999876543
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=3.1e-16 Score=120.23 Aligned_cols=83 Identities=25% Similarity=0.535 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCC--CcccEEEEEEcCHHHHHHHHHHhCCceeC---CeEEE
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTG--QSKHFGFIEFNDPEVAEVVADAMHGYLLF---EHILQ 126 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg--~~~g~afV~F~~~~~a~~ai~~l~g~~l~---g~~l~ 126 (215)
+.++|||+|||+++++++|+++|++||.|.+|.+++++.+| .++|||||+|.+.++|..|+..|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998776 89999999999999999999999998765 67788
Q ss_pred EEEeCCCC
Q 028027 127 VHLIPPEH 134 (215)
Q Consensus 127 V~~a~~~~ 134 (215)
+.++.+..
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88776544
No 178
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=3.7e-16 Score=123.30 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
..++|||+|||+.+++++|+.+|++||.|..|+++++. +|.++|||||+|.+.++|..|+..+ +..++|+.|.|.++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35899999999999999999999999999999999986 6999999999999999999999765 459999999999875
Q ss_pred C
Q 028027 132 P 132 (215)
Q Consensus 132 ~ 132 (215)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 179
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=3.2e-16 Score=114.69 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|| .+++++|+.+|++||.|..|.+. .++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999996 69999999999999999999886 3569999999999999999999999999999999999
Q ss_pred eCCCCC
Q 028027 130 IPPEHV 135 (215)
Q Consensus 130 a~~~~~ 135 (215)
+.+...
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 987644
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=1.7e-16 Score=121.02 Aligned_cols=80 Identities=23% Similarity=0.549 Sum_probs=74.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~ 131 (215)
++++|||+|||+++++++|+++|++||.|.+|.+++++.+|.++|||||+|.+.++|..|+. ++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999998899999999999999999999997 4678999999999876
Q ss_pred CC
Q 028027 132 PE 133 (215)
Q Consensus 132 ~~ 133 (215)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 181
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=109.45 Aligned_cols=79 Identities=22% Similarity=0.488 Sum_probs=66.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
...++|||+|||+.+++++|+.+|++||.|..|.++.+ ++|||||+|.+.++|+.++.. ...+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35689999999999999999999999999999999765 579999999999999764321 34568999999999
Q ss_pred CCCCCC
Q 028027 131 PPEHVH 136 (215)
Q Consensus 131 ~~~~~~ 136 (215)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 182
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=2.6e-16 Score=107.85 Aligned_cols=71 Identities=30% Similarity=0.603 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccC----C-------CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCce
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQF----G-------AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL 119 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~ 119 (215)
...++|||+|||+++++++|+++|++| | .|.++.+..+ +|||||+|.+.++|..|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356899999999999999999999999 8 8999988765 589999999999999999 999999
Q ss_pred eCCeEEEEE
Q 028027 120 LFEHILQVH 128 (215)
Q Consensus 120 l~g~~l~V~ 128 (215)
++|+.|+|+
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999999987
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.65 E-value=4.8e-16 Score=128.78 Aligned_cols=85 Identities=24% Similarity=0.330 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCCC-cHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 50 VNKATVLYIGRIPHGF-YEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~-te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
....++|||+|||+.+ ++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3567899999999995 999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred EeCCCCC
Q 028027 129 LIPPEHV 135 (215)
Q Consensus 129 ~a~~~~~ 135 (215)
++.+...
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9977543
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.65 E-value=9.1e-16 Score=126.97 Aligned_cols=83 Identities=19% Similarity=0.423 Sum_probs=76.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQ----AFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l 125 (215)
..+.++|||+|||+.+++++|+ ++|+.||.|..|.+++ +|.++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999976 8999999999998875 78899999999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q 028027 126 QVHLIPPEHV 135 (215)
Q Consensus 126 ~V~~a~~~~~ 135 (215)
.|.++.....
T Consensus 83 ~v~~a~~~~~ 92 (282)
T 3pgw_A 83 RIQYAKTDSD 92 (282)
T ss_pred EEEEeccCcc
Confidence 9999976543
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.64 E-value=5.3e-16 Score=129.01 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhccCCCeeEEEEeecCC-CCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 028027 50 VNKATVLYIGRIPHG-FYEKEMQAFFSQFGAIKRLRIARNKK-TGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~-tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V 127 (215)
....++|||+|||+. +++++|+++|+.||.|..|.++.+.. ||.++|||||+|.+.++|..|+ .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 456789999999999 99999999999999999999999875 5999999999999999999999 99999999999999
Q ss_pred EEeCCC
Q 028027 128 HLIPPE 133 (215)
Q Consensus 128 ~~a~~~ 133 (215)
.|+.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999875
No 186
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=8.1e-16 Score=124.86 Aligned_cols=80 Identities=29% Similarity=0.424 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCC---------cHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 028027 50 VNKATVLYIGRIPHGF---------YEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL 120 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l 120 (215)
....++|||+||+..+ ++++|+.+|++||.|.+|.|+.+ +|||||+|.+.++|+.|+..|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 79999999999999999999864 69999999999999999999999999
Q ss_pred ------------CCeEEEEEEeCCCCC
Q 028027 121 ------------FEHILQVHLIPPEHV 135 (215)
Q Consensus 121 ------------~g~~l~V~~a~~~~~ 135 (215)
.|+.|.|.||.+.+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.62 E-value=1.9e-15 Score=121.82 Aligned_cols=82 Identities=17% Similarity=0.305 Sum_probs=75.6
Q ss_pred CCCCCCCcEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 028027 47 KPLVNKATVLYIGRIPH-GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (215)
Q Consensus 47 ~~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l 125 (215)
..+..+.++|||+|||+ .+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 28 ~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 28 GLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp GGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34456789999999999 99999999999999999999998875 6899999999999999999999999999999
Q ss_pred EEEEeCCC
Q 028027 126 QVHLIPPE 133 (215)
Q Consensus 126 ~V~~a~~~ 133 (215)
.|.++.+.
T Consensus 103 ~v~~a~~~ 110 (229)
T 2adc_A 103 RITLSKHQ 110 (229)
T ss_dssp EEECCSCC
T ss_pred EEEEecCc
Confidence 99999765
No 188
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.59 E-value=2.2e-15 Score=125.20 Aligned_cols=98 Identities=11% Similarity=0.215 Sum_probs=79.8
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHH
Q 028027 31 DFLPLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAE 109 (215)
Q Consensus 31 d~~~~~g~p~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~ 109 (215)
++..+.|++++... ...++|||+|||+.+++++|+++|+.|| .|..|.++.+. .|.++|||||+|.+.++|.
T Consensus 101 ~~~~~~g~~i~v~~------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~ 173 (292)
T 2ghp_A 101 THKVVGQNEIIVSH------LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDAR 173 (292)
T ss_dssp TTCEETTEECEEEE------CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHH
T ss_pred CCcEeCCcEEEEEE------CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHH
Confidence 55566666665433 2578999999999999999999999999 99999999987 5889999999999999999
Q ss_pred HHHHHhCCceeCCeEEEEEEeCCCCC
Q 028027 110 VVADAMHGYLLFEHILQVHLIPPEHV 135 (215)
Q Consensus 110 ~ai~~l~g~~l~g~~l~V~~a~~~~~ 135 (215)
.|+..|||..++|+.|.|.++.+...
T Consensus 174 ~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 174 YCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp HHHHHHTTCEETTEECEEEECCCC--
T ss_pred HHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 99999999999999999999987644
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=5.5e-16 Score=119.28 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
..+.++|||+|||+++++++|+++|..||.+..+ ++.+..+|.++|||||+|.+.++|..|+ .|||..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 4567999999999999999999999999987663 3344458899999999999999999999 5999999999999999
Q ss_pred eCCCCC
Q 028027 130 IPPEHV 135 (215)
Q Consensus 130 a~~~~~ 135 (215)
+.+...
T Consensus 88 ~~~~~~ 93 (175)
T 1fje_B 88 PKGRDS 93 (175)
T ss_dssp CCCSSC
T ss_pred CCCccc
Confidence 886543
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.8e-14 Score=103.74 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCCCCc-----------HHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCce
Q 028027 51 NKATVLYIGRIPHGFY-----------EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL 119 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~t-----------e~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~ 119 (215)
.++++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|..|+..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4578999999954432 6899999999999999965 443 378999999999999999999999999
Q ss_pred eCCeEEEEEEeCCCCC
Q 028027 120 LFEHILQVHLIPPEHV 135 (215)
Q Consensus 120 l~g~~l~V~~a~~~~~ 135 (215)
|+|+.|.|.++.+...
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999987543
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=9.5e-15 Score=120.02 Aligned_cols=78 Identities=22% Similarity=0.526 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~ 129 (215)
....++|||+|||+++|+++|+.+|+.||.|..|.+.++ +|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 356789999999999999999999999999999999654 58999999999999999999999999999999999
Q ss_pred eCCC
Q 028027 130 IPPE 133 (215)
Q Consensus 130 a~~~ 133 (215)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 8653
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.58 E-value=3.1e-15 Score=117.41 Aligned_cols=77 Identities=18% Similarity=0.360 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 028027 52 KATVLYIGRIPH-GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (215)
Q Consensus 52 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a 130 (215)
.+++|||+|||+ .+++++|+++|++||.|..|.++.++ +|||||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999998874 689999999999999999999999999999999999
Q ss_pred CCC
Q 028027 131 PPE 133 (215)
Q Consensus 131 ~~~ 133 (215)
.+.
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 765
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.57 E-value=1.3e-14 Score=119.93 Aligned_cols=76 Identities=20% Similarity=0.485 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF-EHILQVHL 129 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~-g~~l~V~~ 129 (215)
...++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|+ |+.|+|.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 456889999999999999999999999999999998664 589999999999999999999999999 99999999
Q ss_pred eC
Q 028027 130 IP 131 (215)
Q Consensus 130 a~ 131 (215)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 85
No 194
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.56 E-value=1.8e-15 Score=107.74 Aligned_cols=72 Identities=14% Similarity=0.244 Sum_probs=64.6
Q ss_pred EcCCCCCCcHHHHHHHh------------ccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 028027 58 IGRIPHGFYEKEMQAFF------------SQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (215)
Q Consensus 58 V~nLp~~~te~~L~~~F------------~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l 125 (215)
+.|||+.+++++|++.| ++||.|.+|.|+++. +|.++|||||+|.+.++|..|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777888777666 999999999999986 68999999999999999999999999999999999
Q ss_pred EEEEe
Q 028027 126 QVHLI 130 (215)
Q Consensus 126 ~V~~a 130 (215)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=6e-15 Score=117.35 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCe--eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCe----E
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAI--KRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH----I 124 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v--~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~----~ 124 (215)
.+.++|||+|||+.+++++|+++|++||.| ..+.++.+. |.++|||||+|.+.++|..||..|||+.|.|+ +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 456799999999999999999999999999 899998774 55679999999999999999999999999986 5
Q ss_pred EEEEEe
Q 028027 125 LQVHLI 130 (215)
Q Consensus 125 l~V~~a 130 (215)
+.|.++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=1.7e-14 Score=102.88 Aligned_cols=83 Identities=16% Similarity=0.267 Sum_probs=71.3
Q ss_pred CCCcEEEEcCC--CCCC--------cHHHHHHHhccCCCeeEEEEeecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCc
Q 028027 51 NKATVLYIGRI--PHGF--------YEKEMQAFFSQFGAIKRLRIARNKKT--GQSKHFGFIEFNDPEVAEVVADAMHGY 118 (215)
Q Consensus 51 ~~~~~l~V~nL--p~~~--------te~~L~~~F~~~G~v~~v~i~~~~~t--g~~~g~afV~F~~~~~a~~ai~~l~g~ 118 (215)
.+++.|.|.|+ |..+ .+++|++.|++||.|.+|.|+++..+ +.++|||||+|.+.++|..|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678999998 3333 34789999999999999999988754 468999999999999999999999999
Q ss_pred eeCCeEEEEEEeCCC
Q 028027 119 LLFEHILQVHLIPPE 133 (215)
Q Consensus 119 ~l~g~~l~V~~a~~~ 133 (215)
.++|+.|.|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998653
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=113.67 Aligned_cols=78 Identities=21% Similarity=0.332 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF-EHILQVH 128 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~-g~~l~V~ 128 (215)
.+.++|||+|||..+++++|+++|+.|| .|..+.++.+. +|||||+|.+.++|..|+..|||..++ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 99999996642 689999999999999999999999999 9999999
Q ss_pred EeCCC
Q 028027 129 LIPPE 133 (215)
Q Consensus 129 ~a~~~ 133 (215)
|+++.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99763
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.54 E-value=4.2e-14 Score=102.87 Aligned_cols=81 Identities=19% Similarity=0.248 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCC-----CCcHHHHHHHhccCCCeeEEEEeecCC----CCCcccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 028027 52 KATVLYIGRIPH-----GFYEKEMQAFFSQFGAIKRLRIARNKK----TGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE 122 (215)
Q Consensus 52 ~~~~l~V~nLp~-----~~te~~L~~~F~~~G~v~~v~i~~~~~----tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g 122 (215)
++++|+|.|+-. .-.+++|++.|++||.|.+|.|++++. ++.++||+||+|.+.++|..|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999842 124689999999999999999998864 46788999999999999999999999999999
Q ss_pred eEEEEEEeCC
Q 028027 123 HILQVHLIPP 132 (215)
Q Consensus 123 ~~l~V~~a~~ 132 (215)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.52 E-value=3.8e-14 Score=114.16 Aligned_cols=78 Identities=21% Similarity=0.332 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEE
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF-EHILQVH 128 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~-g~~l~V~ 128 (215)
.+.++|||+|||+.+++++|+++|+.|| .|..|.++.+ .+|||||+|.+.++|..|+..|||..++ |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999998653 2589999999999999999999999999 9999999
Q ss_pred EeCCC
Q 028027 129 LIPPE 133 (215)
Q Consensus 129 ~a~~~ 133 (215)
|+++.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98763
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.51 E-value=5.8e-14 Score=107.34 Aligned_cols=76 Identities=28% Similarity=0.519 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccC----C-------CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQF----G-------AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL 120 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l 120 (215)
+.++|||+|||+++++++|+++|++| | .|.++.+.. ++|||||+|.+.++|..|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 677776654 3699999999999999999 8999999
Q ss_pred CCeEEEEEEeCCCC
Q 028027 121 FEHILQVHLIPPEH 134 (215)
Q Consensus 121 ~g~~l~V~~a~~~~ 134 (215)
.|+.|.|.++.+..
T Consensus 76 ~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTEECEEECCSSCC
T ss_pred cCceeeecCCcccC
Confidence 99999999876654
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=1e-13 Score=108.30 Aligned_cols=76 Identities=29% Similarity=0.521 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccC----C-------CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQF----G-------AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL 120 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l 120 (215)
..++|||+|||+++++++|+++|+.| | .|..+.+ +.++|||||+|.+.++|..|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 5555554 445799999999999999999 8999999
Q ss_pred CCeEEEEEEeCCCC
Q 028027 121 FEHILQVHLIPPEH 134 (215)
Q Consensus 121 ~g~~l~V~~a~~~~ 134 (215)
+|+.|.|.++.+..
T Consensus 76 ~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEEEEECCCCCC
T ss_pred cCceEEEeCCCCCC
Confidence 99999999987653
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=8.7e-13 Score=93.12 Aligned_cols=67 Identities=15% Similarity=0.346 Sum_probs=58.8
Q ss_pred CCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCCCCCC
Q 028027 63 HGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVH 136 (215)
Q Consensus 63 ~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~~~~~ 136 (215)
..+++++|+.+|++||.|..|.|+ +.++|||||+|.+.++|..|+..+++ +.|+.|+|.|+.+....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 568999999999999999999987 36789999999999999999987554 67999999999876543
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.39 E-value=2.5e-12 Score=92.91 Aligned_cols=78 Identities=9% Similarity=0.204 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCCCCC----------cHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 028027 51 NKATVLYIGRIPHGF----------YEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL 120 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~----------te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l 120 (215)
.+++.|.|.|+-..- .+++|++.|++||.|.+|.|.++. ++|||||+|.+.++|..|+..|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456788888873321 235889999999999999997653 489999999999999999999999999
Q ss_pred CCeEEEEEEeCC
Q 028027 121 FEHILQVHLIPP 132 (215)
Q Consensus 121 ~g~~l~V~~a~~ 132 (215)
+|+.|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999854
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=1e-12 Score=111.87 Aligned_cols=75 Identities=12% Similarity=0.298 Sum_probs=64.9
Q ss_pred CCCcEEEEcC--CCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC---Ce--
Q 028027 51 NKATVLYIGR--IPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF---EH-- 123 (215)
Q Consensus 51 ~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~---g~-- 123 (215)
.++.+|||+| |++.+|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|+.|++.|||..+. |+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 5678999999 588999999999999999999987753 3699999999999999999999999873 45
Q ss_pred EEEEEEeC
Q 028027 124 ILQVHLIP 131 (215)
Q Consensus 124 ~l~V~~a~ 131 (215)
.|.|.++.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 57777774
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.1e-11 Score=85.03 Aligned_cols=74 Identities=19% Similarity=0.404 Sum_probs=63.0
Q ss_pred CCCcEEEEcCCCC----CCcH----HHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 028027 51 NKATVLYIGRIPH----GFYE----KEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE 122 (215)
Q Consensus 51 ~~~~~l~V~nLp~----~~te----~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g 122 (215)
++..||+|..++. .+.. .+|...|++||.|..++++.+. +||+|.+.++|.+|+. |||..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4467888887762 3333 6788999999999999998873 8999999999999997 99999999
Q ss_pred eEEEEEEeCCC
Q 028027 123 HILQVHLIPPE 133 (215)
Q Consensus 123 ~~l~V~~a~~~ 133 (215)
+.|+|.++++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998764
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=3.5e-11 Score=87.41 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=67.4
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcC-HHHHHHHHHHhC--CceeCCeEEE
Q 028027 51 NKATVLYIGRIPHG-FYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFND-PEVAEVVADAMH--GYLLFEHILQ 126 (215)
Q Consensus 51 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~-~~~a~~ai~~l~--g~~l~g~~l~ 126 (215)
..++.|||+||++. +++++|+++|++||.|..|.+.++.. .|||.|.+ ..+|..|+..|| +..|.|..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 56889999999999 99999999999999999999988763 59999999 899999999995 6789999998
Q ss_pred EEEeC
Q 028027 127 VHLIP 131 (215)
Q Consensus 127 V~~a~ 131 (215)
+++..
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 88754
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.9e-10 Score=79.28 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=61.5
Q ss_pred CCCcEEEEcCCCCC------CcH---HHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC
Q 028027 51 NKATVLYIGRIPHG------FYE---KEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (215)
Q Consensus 51 ~~~~~l~V~nLp~~------~te---~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~ 121 (215)
++..||+|..++.. ..+ .+|.+.|++||.|..++++.++ +||+|.+.++|.+||. |||..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 44688999988743 232 5688999999999999999874 9999999999999998 9999999
Q ss_pred CeEEEEEEeC
Q 028027 122 EHILQVHLIP 131 (215)
Q Consensus 122 g~~l~V~~a~ 131 (215)
|+.|+|.+..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.01 E-value=8.4e-10 Score=88.14 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=61.2
Q ss_pred CcHHHHHHHhccCCCeeEEEEeecC----CCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 028027 65 FYEKEMQAFFSQFGAIKRLRIARNK----KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (215)
Q Consensus 65 ~te~~L~~~F~~~G~v~~v~i~~~~----~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~~a~~ 132 (215)
-.+++|++.|++||.|.++.++++. .++.++|++||+|.+.++|.+|+..|||..++||.|.|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4568999999999999999998654 3558999999999999999999999999999999999999754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.69 E-value=1e-07 Score=67.09 Aligned_cols=74 Identities=11% Similarity=0.159 Sum_probs=67.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccC-----CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQF-----GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 124 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~-----G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~ 124 (215)
+...++|-+-|||..++...|+.++..+ |.+..+.+..|. +-|+|+|.+...|-+|.-.|+|..|.|+.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 4567889999999999999999999999 999999998885 67999999999999998899999999999
Q ss_pred EEEEE
Q 028027 125 LQVHL 129 (215)
Q Consensus 125 l~V~~ 129 (215)
|+|.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99863
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.84 E-value=6.6e-05 Score=52.40 Aligned_cols=76 Identities=9% Similarity=0.120 Sum_probs=64.0
Q ss_pred CCcEEEEcCCCCCCcH-----HHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 028027 52 KATVLYIGRIPHGFYE-----KEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te-----~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~ 126 (215)
-+++|+|.||+..+-. +.++++|..|+++....+.+.- .-..|.|.+.++|.+|-..|++..++|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 4678999999886522 5779999999999888777653 2468999999999999999999999999999
Q ss_pred EEEeCCC
Q 028027 127 VHLIPPE 133 (215)
Q Consensus 127 V~~a~~~ 133 (215)
|-++.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998754
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=0.00065 Score=47.23 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=61.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhcc-----CCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQ-----FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~-----~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~ 126 (215)
...+|.|.|||+.+.++.|.-+|+. -|+|..+.... +-|+|+|.+...|++++.. ..+.|+|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4578999999999999999999986 25888886633 4789999999999999853 47889999999
Q ss_pred EEEeCCCCCC
Q 028027 127 VHLIPPEHVH 136 (215)
Q Consensus 127 V~~a~~~~~~ 136 (215)
|.-..+....
T Consensus 78 V~P~~~~~~~ 87 (104)
T 2dhx_A 78 LRPAPPRAPA 87 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEcCCCCCcc
Confidence 9876655443
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.66 E-value=0.00038 Score=47.55 Aligned_cols=68 Identities=16% Similarity=0.309 Sum_probs=56.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCC--cccEEEEEEcCHHHHHHHHHHhCCceeC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ--SKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~--~~g~afV~F~~~~~a~~ai~~l~g~~l~ 121 (215)
+.|.|.+||+++|++++.+.++....+....++..+.+.. .-+-|||.|.+.+++....+.++|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4689999999999999999999998877777766543322 3367999999999999999999998764
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.62 E-value=0.00023 Score=48.92 Aligned_cols=56 Identities=18% Similarity=0.465 Sum_probs=47.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH 116 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~ 116 (215)
..+.++| ++|..+...||..+|+.||. ..|.++.|. .|||.|.+++.|..|+..++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3466777 99999999999999999994 467888773 89999999999999998763
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.46 E-value=0.00027 Score=48.80 Aligned_cols=54 Identities=19% Similarity=0.449 Sum_probs=47.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH 116 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~ 116 (215)
+.++| ++|..+...||..+|+.|| -..|.++.|. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45677 9999999999999999999 4577888873 89999999999999998764
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.0016 Score=46.55 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=58.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC-eEEEEE
Q 028027 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE-HILQVH 128 (215)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g-~~l~V~ 128 (215)
....+.|.|-+.|+.. -..+...|++||.|.+..... ...+-.|.|.+..+|++||. .||..|+| -.|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 3456889999999985 466778999999999887621 23699999999999999995 59999985 667777
Q ss_pred EeC
Q 028027 129 LIP 131 (215)
Q Consensus 129 ~a~ 131 (215)
...
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.53 E-value=0.0037 Score=43.03 Aligned_cols=69 Identities=16% Similarity=0.365 Sum_probs=49.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCC--CcccEEEEEEcCHHHHHHHHHHhCCceeC
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTG--QSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg--~~~g~afV~F~~~~~a~~ai~~l~g~~l~ 121 (215)
+-.|.|..||+++||+++.+.++..-.+....++....+. ..-.-|||.|.+.+++..-.+.++|+.+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4569999999999999988877765444332222222111 12256899999999999999999998764
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.50 E-value=0.0037 Score=45.36 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=55.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhccCCCeeE-EEEeec------------CCCC-CcccEEEEEEcCHHHHHHHHHHhC
Q 028027 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR-LRIARN------------KKTG-QSKHFGFIEFNDPEVAEVVADAMH 116 (215)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~------------~~tg-~~~g~afV~F~~~~~a~~ai~~l~ 116 (215)
.....|.|-+.|++.+ ..+-..|++||.|.. +...++ +..+ ...++..|+|.+..+|.+||. .|
T Consensus 5 ~~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 3446678888988655 556678999999866 211110 0000 134688999999999999995 69
Q ss_pred CceeCCeEEEEEEeC
Q 028027 117 GYLLFEHILQVHLIP 131 (215)
Q Consensus 117 g~~l~g~~l~V~~a~ 131 (215)
|..|+|..|-|....
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999988887764
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.48 E-value=0.0013 Score=57.88 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=41.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~ 113 (215)
.++|+|. .|..+++.+|.++|++||+|.++.+-.+. | -||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 4789997 79999999999999999999999887653 3 699999999999887653
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.90 E-value=0.0082 Score=44.42 Aligned_cols=35 Identities=20% Similarity=0.040 Sum_probs=29.0
Q ss_pred EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc
Q 028027 82 RLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY 118 (215)
Q Consensus 82 ~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~ 118 (215)
.+.|+.+. ..++|||||+|.+.++|+.|+..+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 45677774 468999999999999999999888753
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.33 E-value=0.0095 Score=43.79 Aligned_cols=41 Identities=15% Similarity=-0.144 Sum_probs=37.2
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHHh-CCceeCCeEEEEEEeCC
Q 028027 91 TGQSKHFGFIEFNDPEVAEVVADAM-HGYLLFEHILQVHLIPP 132 (215)
Q Consensus 91 tg~~~g~afV~F~~~~~a~~ai~~l-~g~~l~g~~l~V~~a~~ 132 (215)
....+|+++|+|.+.+.|+.|+..| ||..++| .|.+.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4567899999999999999999999 9999999 999998765
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.60 E-value=0.34 Score=43.03 Aligned_cols=55 Identities=18% Similarity=0.449 Sum_probs=46.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028027 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH 116 (215)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~ 116 (215)
+..++|+ +|..+...+|.++|+.||. ..|.++.+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4577776 8889999999999999995 46666655 379999999999999999885
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=73.72 E-value=9.1 Score=24.09 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=40.7
Q ss_pred EEEEc-CCCCCCcHHHHHHHhccCC-----CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 028027 55 VLYIG-RIPHGFYEKEMQAFFSQFG-----AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (215)
Q Consensus 55 ~l~V~-nLp~~~te~~L~~~F~~~G-----~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l~g~~l~g~~l~V~ 128 (215)
++||+ +--..+...+|..++..-+ .|-.+.+.. .|.||+.... .+..++..|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 45554 2233466677777776544 344555532 3889887754 5778888999999999999988
Q ss_pred EeC
Q 028027 129 LIP 131 (215)
Q Consensus 129 ~a~ 131 (215)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 753
No 223
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=63.17 E-value=19 Score=26.96 Aligned_cols=57 Identities=18% Similarity=0.088 Sum_probs=38.4
Q ss_pred cEEEEcCCCC---------CCcHHHHHHHh--ccCCCeeEEEEeecCCCCCcccEEEEEEc-CHHHHHHHHH
Q 028027 54 TVLYIGRIPH---------GFYEKEMQAFF--SQFGAIKRLRIARNKKTGQSKHFGFIEFN-DPEVAEVVAD 113 (215)
Q Consensus 54 ~~l~V~nLp~---------~~te~~L~~~F--~~~G~v~~v~i~~~~~tg~~~g~afV~F~-~~~~a~~ai~ 113 (215)
.++.|-|+|. ..+...|.+.| +.|.++. ++...++ ..+.|++.|.|. +......|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 4566777776 14457889977 9998865 4444443 347899999998 4445555654
No 224
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=45.56 E-value=7.6 Score=33.53 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=12.8
Q ss_pred HHHHHhccCCCeeEE
Q 028027 69 EMQAFFSQFGAIKRL 83 (215)
Q Consensus 69 ~L~~~F~~~G~v~~v 83 (215)
.|..+|.++|+|..|
T Consensus 8 ~L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 8 NLLALFAPRDPIPYL 22 (437)
T ss_pred cHHHhcCCCCCCcCC
Confidence 378899999999877
No 225
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=27.14 E-value=1.3e+02 Score=20.42 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=28.3
Q ss_pred CCCcHHHHHHHhcc-CCC---eeEE-EEeecCCCCCcccEEEEEEcCHHHHHH
Q 028027 63 HGFYEKEMQAFFSQ-FGA---IKRL-RIARNKKTGQSKHFGFIEFNDPEVAEV 110 (215)
Q Consensus 63 ~~~te~~L~~~F~~-~G~---v~~v-~i~~~~~tg~~~g~afV~F~~~~~a~~ 110 (215)
.+.+..+|++-++. |+. +.-| .+...-..|.+.|||.| |.+.+.|..
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677888877654 442 2223 33333345677888876 677777654
No 226
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=26.72 E-value=84 Score=24.00 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCc-ccCCccccCCCCCCcccccc
Q 028027 182 KRRKRIEAAGIE-YECPEIVGNVMPAPKKIKFN 213 (215)
Q Consensus 182 ~~~~kl~~~gi~-~~~~~~~~~~~~~~~~~~~~ 213 (215)
+..-++.-++++ .+.|...+.+|+.|..+.|.
T Consensus 167 ~m~lklrLLdle~v~ip~~~ppip~~P~~~dF~ 199 (203)
T 3a98_B 167 SMEIKLRLLDLENIQIPDAPPPIPKEPSNYDFV 199 (203)
T ss_dssp HHHHHHHTGGGTTCCCCSSCCCCCCCCSCCCCS
T ss_pred HHHHHHHhhcccCCcCCCCCCCCCcCCCCccee
Confidence 444444444444 57899999999999999985
No 227
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.68 E-value=56 Score=26.03 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=26.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeec
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARN 88 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~ 88 (215)
..+.|+|||+.++...|..++.. +.+..+.++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 46789999999999999999977 66666555443
No 228
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=25.01 E-value=34 Score=27.44 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=27.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeec
Q 028027 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARN 88 (215)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~ 88 (215)
..+.|+|||+.++...|..++.....+..+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 45789999999999999999976555666655544
No 229
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=23.30 E-value=73 Score=28.82 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=39.2
Q ss_pred CCCCCCcHHHHHHHhc----cCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028027 60 RIPHGFYEKEMQAFFS----QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115 (215)
Q Consensus 60 nLp~~~te~~L~~~F~----~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l 115 (215)
..+...+-.||..+|- .+|.|+.+.+...+ -.....++++.|.+.++|..++..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 3445555557877773 57889998776554 3445668899999999988887655
No 230
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=20.15 E-value=2e+02 Score=19.04 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=44.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028027 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115 (215)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~tg~~~g~afV~F~~~~~a~~ai~~l 115 (215)
..+-|-|-|+|..+-..++--.....|---.|..+. |-|.|.|.+.+....|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 457788899999999888877777777655665542 57999999999999998766
Done!