BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028028
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 87/164 (53%), Gaps = 1/164 (0%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY TCP A ++R V+ ++ S +R FHDC V CDAS+LLD++
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 93 LSEKEMD-RSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
+SEK + R F ++NIK A+E CPGVVSC D+L L+ + V GGP +
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 152 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVAL 195
GRRD + +P +S + +F+A+G++ LVAL
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVAL 167
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 86/164 (52%), Gaps = 1/164 (0%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY TCP A I+R ++ + S +R FHDC V CDAS+LLD T
Sbjct: 3 LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 93 LSEKEMDRSFG-MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
SEK + R F ++NIK A+E CPGVVSC+D+L L+ V GGP +
Sbjct: 63 QSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLL 122
Query: 152 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVAL 195
GRRD + +P +S+S + +F+A+G++ LVAL
Sbjct: 123 GRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVAL 166
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 104/180 (57%), Gaps = 7/180 (3%)
Query: 31 PGLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTR 90
PGL +FY TCP+AE I+RE V+ ++ A LR FHDC VQ CDAS+LLD +
Sbjct: 7 PGLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSA 66
Query: 91 KTLSEKEMDRSFGMRN--FRYIENIKEAVERECPG-VVSCADILVLSGRDGVVALGGPYI 147
E++ + +R F+ + +I++ +EREC G VVSC+DIL L+ RD VV GGP
Sbjct: 67 TGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDY 126
Query: 148 PLKTGRRDGRK--SRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLVT-TIGLFH 204
+ GRRD R S ++L LP + ++ +L +G+DA LV + TIGL H
Sbjct: 127 RVPLGRRDSRSFASTQDVLSD-LPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAH 185
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 81/164 (49%), Gaps = 1/164 (0%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L NFY CP A I+ V + S LR FHDC VQ CDAS+LLD T
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 93 LSEKEMD-RSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
EK + +R F I+ IK VE CPGVVSCADIL ++ RD VVALGG +
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 152 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVAL 195
GRRD + LP ++S ++ F+ G LV L
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTL 165
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L + Y +CP I+R+QV + K A S +R FHDC V CDASLLLD
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGAD-- 59
Query: 93 LSEK-EMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
SEK + R F I+ IK AVE CPGVVSCADIL L+ RD VV GGP +
Sbjct: 60 -SEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVAL 118
Query: 152 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVAL 195
GR+DG + LP + + ++ +F A+ ++ +VAL
Sbjct: 119 GRKDGLVANQNSANN-LPSPFEPLDAIIAKFVAVNLNITDVVAL 161
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVAL 195
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 120 VPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVAL 167
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVAL 195
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 120 VPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVAL 167
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVAL 195
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL 166
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVAL 195
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL 167
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVAL 195
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL 167
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVAL 195
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL 166
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVAL 195
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL 167
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVAL 195
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL 166
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVAL 195
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL 166
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVAL 195
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL 166
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 89/174 (51%), Gaps = 2/174 (1%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L + FY +CP AE ++++ V + + A +R FHDC V+ CDAS+LLDST
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 93 LSEKE-MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
+EK+ + + +R F I K AVE CP VSCADIL + RD G + +
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 152 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL-VTTIGLFH 204
GRRDG S A +P + + ++ FA + A +V L +IG+ H
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAH 175
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR F DC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVAL 195
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL 167
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 8/168 (4%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S L F DC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVAL 195
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL 166
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 1/164 (0%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY++TCP I+ + S +R FHDC VQ CD S+LL++T
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 93 LSEKE-MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
SE++ + +R + +IK AVE CP VSCADIL ++ V GGP P+
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 152 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVAL 195
GRRD + + Q LP +++ + FA G++ LV L
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTL 165
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++++ P +S AD+ VL+ + +GGP IP GR D + + LPD + +
Sbjct: 77 ETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKT 135
Query: 175 MSVVLERFAAIGIDAPGLVALL-VTTIGLFHQDLT 208
S V E F +G + VAL+ T G H + +
Sbjct: 136 QSHVREVFRRLGFNDQETVALIGAHTCGECHIEFS 170
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++++ P +S AD+ VL+ + +GGP IP GR D + + LPD + +
Sbjct: 77 ETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKT 135
Query: 175 MSVVLERFAAIGIDAPGLVALL-VTTIGLFHQDLT 208
S V E F +G + VAL+ T G H + +
Sbjct: 136 QSHVREVFRRLGFNDQETVALIGAHTCGETHIEFS 170
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++++ P +S AD+ VL+ + +GGP IP GR D + + LPD + +
Sbjct: 76 ETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKT 134
Query: 175 MSVVLERFAAIGIDAPGLVALL-VTTIGLFHQDLT 208
S V E F +G + VAL+ T G H + +
Sbjct: 135 QSHVREVFRRLGFNDQETVALIGAHTCGECHIEFS 169
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 108 RYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQY 167
R +E IKE +VS AD L+G V GGP +P GR D + E
Sbjct: 78 RLLEPIKEQFP-----IVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPP---EGR 129
Query: 168 LPDHNDSMSVVLERFA-AIGIDAPGLVALLVT-TIGLFHQD 206
LPD + + F A+G+ +VAL TIG H++
Sbjct: 130 LPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKE 170
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL 196
+ LPD + V F + ++ +VAL+
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALM 172
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL 196
+ LPD + V F + ++ +VAL+
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALM 174
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLVT-TIGLFHQDLT 208
+ + F A+G+ +VAL TIG H++ +
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKEAS 184
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLVT-TIGLFHQD 206
+ + F A+G+ +VAL TIG H++
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE 182
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLVT-TIGLFHQD 206
+ + F A+G+ +VAL TIG H++
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE 182
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLVT-TIGLFHQD 206
+ + F A+G+ +VAL TIG H++
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE 182
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 33.5 bits (75), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 136
Query: 175 MSVVLERFA-AIGIDAPGLVALLVT-TIGLFHQD 206
+ + F A+G+ +VAL TIG H++
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE 170
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 136
Query: 175 MSVVLERFA-AIGIDAPGLVALLVT-TIGLFHQD 206
+ + F A+G+ +VAL TIG H++
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE 170
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 136
Query: 175 MSVVLERFA-AIGIDAPGLVALLVT-TIGLFHQD 206
+ + F A+G+ +VAL TIG H++
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE 170
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLVT-TIGLFHQD 206
+ + F A+G+ +VAL TIG H++
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE 182
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLVT-TIGLFHQD 206
+ + F A+G+ +VAL TIG H++
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE 182
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLVT-TIGLFHQD 206
+ + F A+G+ +VAL TIG H++
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE 182
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 136
Query: 175 MSVVLERFA-AIGIDAPGLVALLVT-TIGLFHQD 206
+ + F A+G+ +VAL TIG H++
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE 170
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 125 VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLER--F 182
V+ AD+ L+ + GGP IP+K GR D + E LPD R F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 183 AAIGIDAPGLVAL 195
+G++ +VAL
Sbjct: 147 YRMGLNDKEIVAL 159
>pdb|1U2K|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase- Peroxidase Katg Of Escherichia Coli (I41)
pdb|1U2L|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
pdb|1U2L|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
Length = 309
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 113 IKEAVERECPGVVSCADILVLSGRDGVVALGGP-----YIPLKTGRRDGRKSRAEI 163
+ E +++E G S ADI+VL+G GV ++P GR D R+ + +I
Sbjct: 95 VLEKIQKES-GKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDI 149
>pdb|1U2J|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|C Chain C, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|D Chain D, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|E Chain E, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|F Chain F, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|G Chain G, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|H Chain H, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
Length = 326
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 113 IKEAVERECPGVVSCADILVLSGRDGVVALGGP-----YIPLKTGRRDGRKSRAEI 163
+ E +++E G S ADI+VL+G GV ++P GR D R+ + +I
Sbjct: 112 VLEKIQKES-GKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDI 166
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 120 ECPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
CP SCA LV GR G+ AL P +P +T
Sbjct: 3 PCPAPCSCAGTLVDCGRRGLTAL--PALPART 32
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 106 NFRYIENIKEAVERECP-----GVVSCADILVLSGRDGVVAL----GGPYIPLKTGRRDG 156
NF I ++V P +S AD++ +G VAL G P + GR +
Sbjct: 76 NFSANNGIDDSVNNLIPFMQKHNTISAADLVQFAG---AVALSNCPGAPRLEFLAGRPN- 131
Query: 157 RKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAP-GLVALLVT 198
K+ A + + +P+ DS++ +L+RF G P +V+LL +
Sbjct: 132 -KTIAAV-DGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLAS 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,437,438
Number of Sequences: 62578
Number of extensions: 207598
Number of successful extensions: 553
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 43
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)