Query 028028
Match_columns 215
No_of_seqs 139 out of 1252
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 5.4E-67 1.2E-71 469.9 15.0 179 29-211 21-200 (324)
2 cd00693 secretory_peroxidase H 100.0 4.6E-63 9.9E-68 441.9 13.9 179 32-211 1-180 (298)
3 PF00141 peroxidase: Peroxidas 100.0 2.1E-53 4.6E-58 367.4 6.8 155 49-209 1-158 (230)
4 cd00691 ascorbate_peroxidase A 100.0 8.8E-46 1.9E-50 324.0 10.1 156 44-207 11-171 (253)
5 PLN02608 L-ascorbate peroxidas 100.0 2.2E-45 4.7E-50 326.0 10.9 146 47-207 15-169 (289)
6 PLN02364 L-ascorbate peroxidas 100.0 1.2E-44 2.5E-49 316.4 10.4 156 36-206 4-171 (250)
7 PLN02879 L-ascorbate peroxidas 100.0 1.7E-42 3.6E-47 302.6 10.7 145 47-206 18-171 (251)
8 cd00692 ligninase Ligninase an 100.0 3.3E-42 7.1E-47 310.5 11.5 149 45-205 16-181 (328)
9 cd00314 plant_peroxidase_like 100.0 1.7E-41 3.7E-46 295.9 9.2 156 48-211 2-173 (255)
10 cd08201 plant_peroxidase_like_ 100.0 1.5E-41 3.3E-46 297.3 2.5 138 54-208 32-179 (264)
11 cd00649 catalase_peroxidase_1 100.0 3.4E-32 7.5E-37 250.0 8.1 156 46-211 44-255 (409)
12 TIGR00198 cat_per_HPI catalase 100.0 4.5E-31 9.8E-36 256.0 8.6 167 33-210 39-263 (716)
13 PRK15061 catalase/hydroperoxid 100.0 1.3E-28 2.7E-33 238.3 9.0 163 38-210 47-267 (726)
14 cd08200 catalase_peroxidase_2 99.9 6E-24 1.3E-28 188.8 8.9 151 51-207 17-201 (297)
15 TIGR00198 cat_per_HPI catalase 99.8 3.6E-20 7.7E-25 180.4 9.4 150 48-207 429-614 (716)
16 PRK15061 catalase/hydroperoxid 99.8 5.6E-20 1.2E-24 178.5 9.1 150 51-207 442-626 (726)
17 COG0376 KatG Catalase (peroxid 99.7 4.5E-17 9.9E-22 153.2 9.2 150 48-207 71-276 (730)
18 COG0376 KatG Catalase (peroxid 96.9 0.0022 4.8E-08 61.9 6.2 143 51-204 452-627 (730)
19 PF07172 GRP: Glycine rich pro 68.7 4.8 0.0001 30.5 2.6 19 1-19 1-19 (95)
20 PHA03163 hypothetical protein; 65.3 9.4 0.0002 28.7 3.5 38 4-42 8-45 (92)
21 KOG0427 Ubiquitin conjugating 52.1 13 0.00028 30.1 2.4 46 11-75 114-159 (161)
22 PF14919 MTBP_mid: MDM2-bindin 49.0 20 0.00042 33.1 3.4 60 104-193 272-331 (342)
23 PF08782 c-SKI_SMAD_bind: c-SK 36.5 9.7 0.00021 29.1 -0.4 15 71-86 4-18 (96)
24 PTZ00411 transaldolase-like pr 36.1 25 0.00055 32.4 2.1 60 142-201 180-255 (333)
25 PHA03156 hypothetical protein; 34.4 39 0.00086 25.4 2.5 9 34-42 36-44 (90)
26 KOG4065 Uncharacterized conser 33.6 1.2E+02 0.0026 24.3 5.2 61 11-72 7-72 (144)
27 PRK13859 type IV secretion sys 32.7 33 0.00071 23.4 1.7 31 130-160 9-42 (55)
28 KOG3803 Transcription factor c 27.3 38 0.00083 34.2 1.8 36 40-88 670-705 (968)
29 PF04225 OapA: Opacity-associa 26.2 45 0.00097 24.4 1.7 23 176-198 11-33 (85)
30 PF15240 Pro-rich: Proline-ric 24.2 60 0.0013 27.5 2.2 15 8-23 2-16 (179)
31 KOG3563 Forkhead/HNF-3-related 24.2 27 0.00058 32.9 0.1 8 70-77 225-232 (454)
32 COG3763 Uncharacterized protei 22.8 78 0.0017 22.8 2.3 29 48-76 24-52 (71)
33 COG5429 Uncharacterized secret 21.8 1E+02 0.0023 27.4 3.3 31 34-73 44-78 (261)
34 PRK13159 cytochrome c-type bio 21.6 42 0.00092 27.7 0.8 35 3-39 5-39 (155)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=5.4e-67 Score=469.95 Aligned_cols=179 Identities=41% Similarity=0.656 Sum_probs=171.7
Q ss_pred CCCCCCcCcccCCCccHHHHHHHHHHHHHHhCcCCccchhhhhcccccccCCCCceecccCCCcccccccCCCCCcchhH
Q 028028 29 EDPGLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFR 108 (215)
Q Consensus 29 ~~~~L~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~v~GcDgSill~~~~~~~~E~~~~~N~gL~~~~ 108 (215)
++++|+++||+++||++|+||+++|++.++++++++|++|||+||||||+||||||||+++ ..|+++++|.+|+||+
T Consensus 21 ~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~~l~Gf~ 97 (324)
T PLN03030 21 QGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNLLLRGYD 97 (324)
T ss_pred hhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCcCcchHH
Confidence 4567999999999999999999999999999999999999999999999999999999864 3699999999999999
Q ss_pred HHHHHHHHHHhhCCCCcchhhHhhhhhcccccccCCCceeeeCCCCCCCCCchhhhccCCCCCCCCHHHHHHHHHhcCCC
Q 028028 109 YIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 188 (215)
Q Consensus 109 ~i~~iK~~le~~cp~~VScADiialAar~av~~~GGP~~~V~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~ 188 (215)
+|+.||+++|++||++|||||||++||||+|+++|||.|+|++||||+++|.+.++. +||.|+.++++|++.|+++||+
T Consensus 98 ~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~ 176 (324)
T PLN03030 98 VIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLN 176 (324)
T ss_pred HHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999998877664 8999999999999999999999
Q ss_pred chhhhhhccc-cccccccCCcccc
Q 028028 189 APGLVALLVT-TIGLFHQDLTVLA 211 (215)
Q Consensus 189 ~~dlVALsGa-TiG~~hc~~f~~~ 211 (215)
.+|||+|||| |||++||.+|..|
T Consensus 177 ~~DlVaLsGAHTiG~ahC~~f~~R 200 (324)
T PLN03030 177 TQDLVTLVGGHTIGTTACQFFRYR 200 (324)
T ss_pred HHHheeeeeccccceeeeeccccc
Confidence 9999999999 9999999999865
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4.6e-63 Score=441.87 Aligned_cols=179 Identities=45% Similarity=0.666 Sum_probs=173.0
Q ss_pred CCCcCcccCCCccHHHHHHHHHHHHHHhCcCCccchhhhhcccccccCCCCceecccCCCcccccccCCCCCcchhHHHH
Q 028028 32 GLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIE 111 (215)
Q Consensus 32 ~L~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~v~GcDgSill~~~~~~~~E~~~~~N~gL~~~~~i~ 111 (215)
||+++||+++||++|+||+++|++.++++++++|++|||+||||||+||||||+|+++.++..|+++++|.||+||++|+
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~ 80 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVID 80 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHH
Confidence 69999999999999999999999999999999999999999999999999999999887778999999999999999999
Q ss_pred HHHHHHHhhCCCCcchhhHhhhhhcccccccCCCceeeeCCCCCCCCCchhhhccCCCCCCCCHHHHHHHHHhcCCCchh
Q 028028 112 NIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPG 191 (215)
Q Consensus 112 ~iK~~le~~cp~~VScADiialAar~av~~~GGP~~~V~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d 191 (215)
+||+++|++||++|||||||++|+|+||+++|||.|+|++||+|++++.+..+ ++||.|+.+++++++.|+++||+++|
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~d 159 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVTD 159 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHHH
Confidence 99999999999999999999999999999999999999999999998877655 78999999999999999999999999
Q ss_pred hhhhccc-cccccccCCcccc
Q 028028 192 LVALLVT-TIGLFHQDLTVLA 211 (215)
Q Consensus 192 lVALsGa-TiG~~hc~~f~~~ 211 (215)
||||+|| |||++||.+|..|
T Consensus 160 ~VaL~GaHTiG~~hc~~f~~R 180 (298)
T cd00693 160 LVALSGAHTIGRAHCSSFSDR 180 (298)
T ss_pred heeecccceeeeeeccccccc
Confidence 9999999 9999999999876
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=2.1e-53 Score=367.38 Aligned_cols=155 Identities=43% Similarity=0.651 Sum_probs=145.1
Q ss_pred HHHHHHHHHHhCcCCccchhhhhcccccc-cCCCCceecccCCCcccccccCCCCCcc-hhHHHHHHHHHHHhhCCCCcc
Q 028028 49 IREQVKLLYKRHKNTAFSWLRNIFHDCAV-QSCDASLLLDSTRKTLSEKEMDRSFGMR-NFRYIENIKEAVERECPGVVS 126 (215)
Q Consensus 49 V~~~v~~~~~~~~~~a~~llRL~FHDc~v-~GcDgSill~~~~~~~~E~~~~~N~gL~-~~~~i~~iK~~le~~cp~~VS 126 (215)
||++|++.++++++++|++|||+|||||+ +||||||++. ..|+++++|.||+ ++++|+.||+++|++||++||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS 75 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVS 75 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCCC
Confidence 79999999999999999999999999999 9999999983 4799999999997 999999999999999999999
Q ss_pred hhhHhhhhhcccccccCCCceeeeCCCCCCCCCchhhhccCCCCCCCCHHHHHHHHHhcCCCchhhhhhccc-ccccccc
Q 028028 127 CADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLVT-TIGLFHQ 205 (215)
Q Consensus 127 cADiialAar~av~~~GGP~~~V~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGa-TiG~~hc 205 (215)
|||||++|+|+||+.+|||.|+|++||+|+.++++.++ .+||.|+.+++++++.|+++|||++|||||+|+ |||++||
T Consensus 76 ~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c 154 (230)
T PF00141_consen 76 CADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHC 154 (230)
T ss_dssp HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESG
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceeccccccccee
Confidence 99999999999999999999999999999999999877 789999999999999999999999999999999 9999999
Q ss_pred CCcc
Q 028028 206 DLTV 209 (215)
Q Consensus 206 ~~f~ 209 (215)
.+|.
T Consensus 155 ~~f~ 158 (230)
T PF00141_consen 155 SSFS 158 (230)
T ss_dssp GCTG
T ss_pred cccc
Confidence 9888
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=8.8e-46 Score=324.00 Aligned_cols=156 Identities=25% Similarity=0.349 Sum_probs=142.4
Q ss_pred cHHHHHHHHHHHHHHhCcCCccchhhhhcccccccCCCCceecccC---CCcccccccCCCCCc-chhHHHHHHHHHHHh
Q 028028 44 QAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDST---RKTLSEKEMDRSFGM-RNFRYIENIKEAVER 119 (215)
Q Consensus 44 ~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~v~GcDgSill~~~---~~~~~E~~~~~N~gL-~~~~~i~~iK~~le~ 119 (215)
..++||+++|++.++ ++.++|++|||+|||||+ ||+|++.+++ ..+.+|+++++|.|| ++|++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 457899999999999 999999999999999984 7777766432 233579999999999 8999999999987
Q ss_pred hCCCCcchhhHhhhhhcccccccCCCceeeeCCCCCCCCCchhhhccCCCCCCCCHHHHHHHHHhcCCCchhhhhhccc-
Q 028028 120 ECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLVT- 198 (215)
Q Consensus 120 ~cp~~VScADiialAar~av~~~GGP~~~V~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGa- 198 (215)
++|||||||++|+|+||+.+|||.|+|++||+|+.++....++++||.|+.+++++++.|+++||+++|||||+|+
T Consensus 86 ---~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaH 162 (253)
T cd00691 86 ---PDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAH 162 (253)
T ss_pred ---CCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccc
Confidence 4899999999999999999999999999999999999876677889999999999999999999999999999999
Q ss_pred cccccccCC
Q 028028 199 TIGLFHQDL 207 (215)
Q Consensus 199 TiG~~hc~~ 207 (215)
|||++||..
T Consensus 163 TiG~a~c~~ 171 (253)
T cd00691 163 TLGRCHKER 171 (253)
T ss_pred eeecccccC
Confidence 999999965
No 5
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=2.2e-45 Score=326.03 Aligned_cols=146 Identities=25% Similarity=0.344 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHhCcCCccchhhhhccccc-------ccCCCCceecccCCCcccccccCCCCCc-chhHHHHHHHHHHH
Q 028028 47 DIIREQVKLLYKRHKNTAFSWLRNIFHDCA-------VQSCDASLLLDSTRKTLSEKEMDRSFGM-RNFRYIENIKEAVE 118 (215)
Q Consensus 47 ~iV~~~v~~~~~~~~~~a~~llRL~FHDc~-------v~GcDgSill~~~~~~~~E~~~~~N~gL-~~~~~i~~iK~~le 118 (215)
+.+++++++ +.+++.++|.+|||+||||| ++||||||+++ .|+++++|.|| +++++|++||+++
T Consensus 15 ~~~~~~~~~-~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~~- 86 (289)
T PLN02608 15 EKARRDLRA-LIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAKH- 86 (289)
T ss_pred HHHHHHHHH-HHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccchHHHHHHHHHHHHHc-
Confidence 456677754 66789999999999999999 89999999984 59999999999 5999999999987
Q ss_pred hhCCCCcchhhHhhhhhcccccccCCCceeeeCCCCCCCCCchhhhccCCCCCCCCHHHHHHHHHhcCCCchhhhhhccc
Q 028028 119 RECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLVT 198 (215)
Q Consensus 119 ~~cp~~VScADiialAar~av~~~GGP~~~V~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGa 198 (215)
++|||||||++|+|+||+++|||.|+|++||+|++++++ +++||.|+.+++++++.|+++|||++|||||+||
T Consensus 87 ----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGA 159 (289)
T PLN02608 87 ----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGG 159 (289)
T ss_pred ----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhccc
Confidence 589999999999999999999999999999999999864 4689999999999999999999999999999999
Q ss_pred -cccccccCC
Q 028028 199 -TIGLFHQDL 207 (215)
Q Consensus 199 -TiG~~hc~~ 207 (215)
|||++||..
T Consensus 160 HTiG~ahc~r 169 (289)
T PLN02608 160 HTLGRAHPER 169 (289)
T ss_pred cccccccccC
Confidence 999999973
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.2e-44 Score=316.36 Aligned_cols=156 Identities=28% Similarity=0.433 Sum_probs=142.8
Q ss_pred Cccc--CCCccHHHHHHHHHHHHHHhCcCCccchhhhhcc-----ccccc--CCCCceecccCCCcccccccCCCCCc-c
Q 028028 36 NFYK--DTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFH-----DCAVQ--SCDASLLLDSTRKTLSEKEMDRSFGM-R 105 (215)
Q Consensus 36 ~fY~--~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FH-----Dc~v~--GcDgSill~~~~~~~~E~~~~~N~gL-~ 105 (215)
+||. +-||++++.+++.+++.+ .+++++|.+|||+|| ||+++ ||||||.+ ..|+++++|.|| +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~~ 76 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIHI 76 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHHH
Confidence 5665 347889999999999988 779999999999999 88876 99999954 369999999999 7
Q ss_pred hhHHHHHHHHHHHhhCCCCcchhhHhhhhhcccccccCCCceeeeCCCCCCCCCchhhhccCCCCCCCCHHHHHHHHHh-
Q 028028 106 NFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAA- 184 (215)
Q Consensus 106 ~~~~i~~iK~~le~~cp~~VScADiialAar~av~~~GGP~~~V~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~- 184 (215)
+|++|+.||+++ ++|||||||+||+|+||+++|||.|+|++||+|++++++ +++||.|+.++++|++.|++
T Consensus 77 ~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~~ 148 (250)
T PLN02364 77 ALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAKQ 148 (250)
T ss_pred HHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHHh
Confidence 999999999998 689999999999999999999999999999999999875 46799999999999999997
Q ss_pred cCCCchhhhhhccc-cccccccC
Q 028028 185 IGIDAPGLVALLVT-TIGLFHQD 206 (215)
Q Consensus 185 ~Gl~~~dlVALsGa-TiG~~hc~ 206 (215)
+|||++|||||+|| |||++||.
T Consensus 149 ~Gl~~~d~VaLsGaHTiG~~hc~ 171 (250)
T PLN02364 149 MGLSDKDIVALSGAHTLGRCHKD 171 (250)
T ss_pred cCCCHHHheeeecceeeccccCC
Confidence 59999999999999 99999994
No 7
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1.7e-42 Score=302.65 Aligned_cols=145 Identities=26% Similarity=0.377 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHhCcCCccchhhhhcccccc-------cCCCCceecccCCCcccccccCCCCCcc-hhHHHHHHHHHHH
Q 028028 47 DIIREQVKLLYKRHKNTAFSWLRNIFHDCAV-------QSCDASLLLDSTRKTLSEKEMDRSFGMR-NFRYIENIKEAVE 118 (215)
Q Consensus 47 ~iV~~~v~~~~~~~~~~a~~llRL~FHDc~v-------~GcDgSill~~~~~~~~E~~~~~N~gL~-~~~~i~~iK~~le 118 (215)
+-+++.+.+.+ ++..++|.+|||+||||.+ |||||||+++ .|+++++|.||+ ++++|+.||+++
T Consensus 18 ~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~gL~~~~~~i~~iK~~~- 89 (251)
T PLN02879 18 QRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANNGLDIAVRLLDPIKELF- 89 (251)
T ss_pred HHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcCChHHHHHHHHHHHHHc-
Confidence 34567777776 4579999999999999974 8999999873 599999999997 999999999988
Q ss_pred hhCCCCcchhhHhhhhhcccccccCCCceeeeCCCCCCCCCchhhhccCCCCCCCCHHHHHHHHHhcCCCchhhhhhccc
Q 028028 119 RECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLVT 198 (215)
Q Consensus 119 ~~cp~~VScADiialAar~av~~~GGP~~~V~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGa 198 (215)
++|||||||+||+|+||+.+|||.|+|++||+|+..+++ +++||.|+.+++++++.|+++||+++|||||+||
T Consensus 90 ----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~---~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGa 162 (251)
T PLN02879 90 ----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP---EGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGG 162 (251)
T ss_pred ----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecc
Confidence 689999999999999999999999999999999998865 5689999999999999999999999999999999
Q ss_pred -cccccccC
Q 028028 199 -TIGLFHQD 206 (215)
Q Consensus 199 -TiG~~hc~ 206 (215)
|||++||.
T Consensus 163 HTiG~ah~~ 171 (251)
T PLN02879 163 HTLGRCHKE 171 (251)
T ss_pred ccccccccc
Confidence 99999996
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.3e-42 Score=310.48 Aligned_cols=149 Identities=25% Similarity=0.355 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHhCc---CCccchhhhhcccccc------------cCCCCceecccCCCcccccccCCCCCcchhHH
Q 028028 45 AEDIIREQVKLLYKRHK---NTAFSWLRNIFHDCAV------------QSCDASLLLDSTRKTLSEKEMDRSFGMRNFRY 109 (215)
Q Consensus 45 ~e~iV~~~v~~~~~~~~---~~a~~llRL~FHDc~v------------~GcDgSill~~~~~~~~E~~~~~N~gL~~~~~ 109 (215)
+|..|++++++.+..+. ..++.+|||+||||++ +|||||||++.+ .|+++++|.||+ ++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~gL~--~v 89 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIGLD--EI 89 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCCHH--HH
Confidence 36789999999998554 4667799999999996 899999999753 699999999998 99
Q ss_pred HHHHHHHHHhhCCCCcchhhHhhhhhcccccc-cCCCceeeeCCCCCCCCCchhhhccCCCCCCCCHHHHHHHHHhcCCC
Q 028028 110 IENIKEAVERECPGVVSCADILVLSGRDGVVA-LGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 188 (215)
Q Consensus 110 i~~iK~~le~~cp~~VScADiialAar~av~~-~GGP~~~V~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~ 188 (215)
|+.+|..+|++| |||||||+||+|+||+. .|||.|+|++||+|++++.+ +++||.|+.+++++++.|+++||+
T Consensus 90 vd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~---~g~LP~p~~sv~~l~~~F~~~Gf~ 163 (328)
T cd00692 90 VEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAP---DGLVPEPFDSVDKILARFADAGFS 163 (328)
T ss_pred HHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCC
Confidence 999999999998 99999999999999995 69999999999999999865 468999999999999999999999
Q ss_pred chhhhhhccc-ccccccc
Q 028028 189 APGLVALLVT-TIGLFHQ 205 (215)
Q Consensus 189 ~~dlVALsGa-TiG~~hc 205 (215)
++|||||+|| |||++|.
T Consensus 164 ~~E~VaLsGAHTiG~a~~ 181 (328)
T cd00692 164 PDELVALLAAHSVAAQDF 181 (328)
T ss_pred HHHHhhhcccccccccCC
Confidence 9999999999 9999994
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.7e-41 Score=295.87 Aligned_cols=156 Identities=31% Similarity=0.437 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHhCcCCccchhhhhccccccc--------CCCCceecccCCCcccccccCCCCCc-chhHHHHHHHHHHH
Q 028028 48 IIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ--------SCDASLLLDSTRKTLSEKEMDRSFGM-RNFRYIENIKEAVE 118 (215)
Q Consensus 48 iV~~~v~~~~~~~~~~a~~llRL~FHDc~v~--------GcDgSill~~~~~~~~E~~~~~N~gL-~~~~~i~~iK~~le 118 (215)
.|++.|++.+.+++.+++++|||+||||++. ||||||+++. |+++++|.|| +++++|+.||.++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~------e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEP------ELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccc------cccCcccccHHHHHHHHHHHHHHcC
Confidence 5788999999999999999999999999996 9999999963 9999999997 89999999999998
Q ss_pred hhCCCCcchhhHhhhhhccccccc--CCCceeeeCCCCCCCCCc--hhhhccCCCCCCCCHHHHHHHHHhcCCCchhhhh
Q 028028 119 RECPGVVSCADILVLSGRDGVVAL--GGPYIPLKTGRRDGRKSR--AEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVA 194 (215)
Q Consensus 119 ~~cp~~VScADiialAar~av~~~--GGP~~~V~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVA 194 (215)
. |++|||||||++|+++||+.+ |||.|++++||+|+..++ ...+.+++|.|+.+++++++.|+++||+++||||
T Consensus 76 ~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VA 153 (255)
T cd00314 76 G--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVA 153 (255)
T ss_pred C--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHh
Confidence 8 899999999999999999999 999999999999999663 2233567888999999999999999999999999
Q ss_pred hc-cc-cc-cccccCCcccc
Q 028028 195 LL-VT-TI-GLFHQDLTVLA 211 (215)
Q Consensus 195 Ls-Ga-Ti-G~~hc~~f~~~ 211 (215)
|+ |+ || |++||..+..+
T Consensus 154 L~~GaHti~G~~~~~~~~~~ 173 (255)
T cd00314 154 LSAGAHTLGGKNHGDLLNYE 173 (255)
T ss_pred hccCCeeccCcccCCCCCcc
Confidence 99 99 99 99999998654
No 10
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1.5e-41 Score=297.30 Aligned_cols=138 Identities=24% Similarity=0.371 Sum_probs=120.5
Q ss_pred HHHHHhCcCCccchhhhhccccc-------ccCCCCceecccCCCcccccc-cCCCCCcchhHHHHHHHHHHHhhCCCCc
Q 028028 54 KLLYKRHKNTAFSWLRNIFHDCA-------VQSCDASLLLDSTRKTLSEKE-MDRSFGMRNFRYIENIKEAVERECPGVV 125 (215)
Q Consensus 54 ~~~~~~~~~~a~~llRL~FHDc~-------v~GcDgSill~~~~~~~~E~~-~~~N~gL~~~~~i~~iK~~le~~cp~~V 125 (215)
......++++++++|||+||||| ++||||||+++.+ .+|+. ...|.+|++|+.|+. ..|
T Consensus 32 ~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~~l~~~~~i~~----------~~V 98 (264)
T cd08201 32 DCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNTTLNFFVNFYS----------PRS 98 (264)
T ss_pred ccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhhccccceeecc----------Ccc
Confidence 33444788999999999999999 8999999999743 35766 445567777776543 269
Q ss_pred chhhHhhhhhcccccccCCCceeeeCCCCCCCCCchhhhccCCCCCCCCHHHHHHHHHhcCCCchhhhhhcc-c-ccccc
Q 028028 126 SCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLV-T-TIGLF 203 (215)
Q Consensus 126 ScADiialAar~av~~~GGP~~~V~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsG-a-TiG~~ 203 (215)
|||||||||+|+||+.+|||.|+|++||+|++.+++. .||.|+.++++|++.|+++||+++|||+||| + |||++
T Consensus 99 ScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~a 174 (264)
T cd08201 99 SMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGV 174 (264)
T ss_pred CHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeec
Confidence 9999999999999999999999999999999988763 4999999999999999999999999999996 8 99999
Q ss_pred ccCCc
Q 028028 204 HQDLT 208 (215)
Q Consensus 204 hc~~f 208 (215)
||..|
T Consensus 175 hc~~f 179 (264)
T cd08201 175 HSEDF 179 (264)
T ss_pred ccccc
Confidence 99987
No 11
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=99.97 E-value=3.4e-32 Score=249.97 Aligned_cols=156 Identities=18% Similarity=0.213 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHhC--------cCCccchhhhhcccccc-------cCCC-CceecccCCCcccccccCCCCCc-chhH
Q 028028 46 EDIIREQVKLLYKRH--------KNTAFSWLRNIFHDCAV-------QSCD-ASLLLDSTRKTLSEKEMDRSFGM-RNFR 108 (215)
Q Consensus 46 e~iV~~~v~~~~~~~--------~~~a~~llRL~FHDc~v-------~GcD-gSill~~~~~~~~E~~~~~N~gL-~~~~ 108 (215)
.+.|++++++++.+. ..++|.+|||+|||+.+ ||++ |+|.++ +|++++.|.|| ++..
T Consensus 44 ~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------pe~~~~~N~gL~~a~~ 117 (409)
T cd00649 44 LEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------PLNSWPDNVNLDKARR 117 (409)
T ss_pred HHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------cccCcHhhhhHHHHHH
Confidence 368899999999865 37999999999999996 7897 788875 59999999999 6899
Q ss_pred HHHHHHHHHHhhCCCCcchhhHhhhhhcccccccCCCceeeeCCCCCCCCCchh--------------------------
Q 028028 109 YIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAE-------------------------- 162 (215)
Q Consensus 109 ~i~~iK~~le~~cp~~VScADiialAar~av~~~GGP~~~V~~GR~D~~~s~~~-------------------------- 162 (215)
+++.||+++ |..||+||+|+||+.+||+.+|||.|++..||.|...+...
T Consensus 118 ~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~ 193 (409)
T cd00649 118 LLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLA 193 (409)
T ss_pred HHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchh
Confidence 999999987 45799999999999999999999999999999999754320
Q ss_pred -----------hhccCCCCCCCCHHHHHHHHHhcCCCchhhhhh-ccc-cccccccCCcccc
Q 028028 163 -----------ILEQYLPDHNDSMSVVLERFAAIGIDAPGLVAL-LVT-TIGLFHQDLTVLA 211 (215)
Q Consensus 163 -----------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVAL-sGa-TiG~~hc~~f~~~ 211 (215)
+-+..+|.|..++++|++.|.++|||.+||||| +|| |||++||..|..|
T Consensus 194 a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~r 255 (409)
T cd00649 194 AVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASH 255 (409)
T ss_pred hhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCccccccc
Confidence 112269999999999999999999999999999 599 9999999988654
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.97 E-value=4.5e-31 Score=256.05 Aligned_cols=167 Identities=19% Similarity=0.239 Sum_probs=138.9
Q ss_pred CCcCc-ccCCCccH-HHHHHHHHHHHHHhC--------cCCccchhhhhcccccc-------cCC-CCceecccCCCccc
Q 028028 33 LVMNF-YKDTCPQA-EDIIREQVKLLYKRH--------KNTAFSWLRNIFHDCAV-------QSC-DASLLLDSTRKTLS 94 (215)
Q Consensus 33 L~~~f-Y~~sCP~~-e~iV~~~v~~~~~~~--------~~~a~~llRL~FHDc~v-------~Gc-DgSill~~~~~~~~ 94 (215)
+..+| |.+.+-+. .+.|++++++++.+. ..++|.+|||+||++.+ ||| .|+|.+. +
T Consensus 39 ~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------P 112 (716)
T TIGR00198 39 MGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------P 112 (716)
T ss_pred CCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------c
Confidence 44343 44444433 357999999999875 36999999999999997 788 5888875 5
Q ss_pred ccccCCCCCc-chhHHHHHHHHHHHhhCCCCcchhhHhhhhhcccccccCCCceeeeCCCCCCCCCc-------------
Q 028028 95 EKEMDRSFGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSR------------- 160 (215)
Q Consensus 95 E~~~~~N~gL-~~~~~i~~iK~~le~~cp~~VScADiialAar~av~~~GGP~~~V~~GR~D~~~s~------------- 160 (215)
|++++.|.+| ++..+++.||+ +||+.|||||||+||+++||+.+|||.|++.+||+|+..+.
T Consensus 113 ~~sw~~N~~Ldka~~lL~pIk~----kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~ 188 (716)
T TIGR00198 113 LNSWPDNVNLDKARRLLWPIKK----KYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLT 188 (716)
T ss_pred ccCchhhhhHHHHHHHHHHHHH----HCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhh
Confidence 9999999999 57888888887 47899999999999999999999999999999999994321
Q ss_pred ------------------------hhhhccCCCCCCCCHHHHHHHHHhcCCCchhhhhhc-cc-cccccccCCccc
Q 028028 161 ------------------------AEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL-VT-TIGLFHQDLTVL 210 (215)
Q Consensus 161 ------------------------~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALs-Ga-TiG~~hc~~f~~ 210 (215)
+.. ...+|.|..++++|++.|.++|||.+|||||+ |+ |||++||.+|..
T Consensus 189 ~~~~~~~~l~~p~a~~~~Gliyvnpeg-~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~ 263 (716)
T TIGR00198 189 SSREDRESLENPLAATEMGLIYVNPEG-PDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAE 263 (716)
T ss_pred ccccccccccccchhhhccccccCccc-ccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccc
Confidence 111 22699999999999999999999999999996 99 999999998864
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.95 E-value=1.3e-28 Score=238.27 Aligned_cols=163 Identities=17% Similarity=0.227 Sum_probs=137.6
Q ss_pred ccCCCccH-HHHHHHHHHHHHHhC--------cCCccchhhhhcccccc-------cCCC-CceecccCCCcccccccCC
Q 028028 38 YKDTCPQA-EDIIREQVKLLYKRH--------KNTAFSWLRNIFHDCAV-------QSCD-ASLLLDSTRKTLSEKEMDR 100 (215)
Q Consensus 38 Y~~sCP~~-e~iV~~~v~~~~~~~--------~~~a~~llRL~FHDc~v-------~GcD-gSill~~~~~~~~E~~~~~ 100 (215)
|++.+-.. .+.|++++++.+.+. ..++|.+|||+||++.+ |||+ |+|.+. +|++++.
T Consensus 47 y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~------pe~~w~~ 120 (726)
T PRK15061 47 YAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA------PLNSWPD 120 (726)
T ss_pred HHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc------ccccchh
Confidence 44444333 357999999999865 36999999999999996 7886 788774 5999999
Q ss_pred CCCc-chhHHHHHHHHHHHhhCCCCcchhhHhhhhhcccccccCCCceeeeCCCCCCCCCchh-----------------
Q 028028 101 SFGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAE----------------- 162 (215)
Q Consensus 101 N~gL-~~~~~i~~iK~~le~~cp~~VScADiialAar~av~~~GGP~~~V~~GR~D~~~s~~~----------------- 162 (215)
|.|| ++..+++.||+++ |..||+||+|+||+..|||.+|||.|++..||.|...+...
T Consensus 121 N~gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~ 196 (726)
T PRK15061 121 NVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYS 196 (726)
T ss_pred hhhHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccc
Confidence 9999 6899999999987 45799999999999999999999999999999998654321
Q ss_pred ---------------------hhccCCCCCCCCHHHHHHHHHhcCCCchhhhhhc-cc-cccccccCCccc
Q 028028 163 ---------------------ILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL-VT-TIGLFHQDLTVL 210 (215)
Q Consensus 163 ---------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALs-Ga-TiG~~hc~~f~~ 210 (215)
+-+..+|.|..++.+|++.|.+||||.+|||||+ |+ |||++||..|..
T Consensus 197 ~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~ 267 (726)
T PRK15061 197 GERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDAS 267 (726)
T ss_pred cccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccc
Confidence 0012379999999999999999999999999995 99 999999998754
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.90 E-value=6e-24 Score=188.78 Aligned_cols=151 Identities=16% Similarity=0.271 Sum_probs=123.8
Q ss_pred HHHHHHHHhCcCCccchhhhhcccccc-------cCCCCc-eecccCCCcccccccCCCCC--c-chhHHHHHHHHHHHh
Q 028028 51 EQVKLLYKRHKNTAFSWLRNIFHDCAV-------QSCDAS-LLLDSTRKTLSEKEMDRSFG--M-RNFRYIENIKEAVER 119 (215)
Q Consensus 51 ~~v~~~~~~~~~~a~~llRL~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N~g--L-~~~~~i~~iK~~le~ 119 (215)
+.+++.+.+....++.++|++||++.+ ||++|+ |.+. +|++++.|.+ | +.+.++++||+++..
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~------pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA------PQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc------cccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 678888888889999999999999996 899999 6664 6999999998 8 589999999998832
Q ss_pred -hCC-CCcchhhHhhhhhcccccccCC-----CceeeeCCCCCCCCCchhh--hccCCCCCC------------CCHHHH
Q 028028 120 -ECP-GVVSCADILVLSGRDGVVALGG-----PYIPLKTGRRDGRKSRAEI--LEQYLPDHN------------DSMSVV 178 (215)
Q Consensus 120 -~cp-~~VScADiialAar~av~~~GG-----P~~~V~~GR~D~~~s~~~~--~~~~lP~p~------------~~~~~l 178 (215)
+-+ ..||+||+|+||+..|||.+|| |.|++.+||.|...+.... -....|.+. ...+.|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 222 2799999999999999999999 9999999999998753211 011334332 234789
Q ss_pred HHHHHhcCCCchhhhhhccc--cccccccCC
Q 028028 179 LERFAAIGIDAPGLVALLVT--TIGLFHQDL 207 (215)
Q Consensus 179 ~~~F~~~Gl~~~dlVALsGa--TiG~~hc~~ 207 (215)
+..|.++|||++|||||+|+ ++|.+|..+
T Consensus 171 rd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s 201 (297)
T cd08200 171 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGS 201 (297)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCC
Confidence 99999999999999999999 799998654
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.81 E-value=3.6e-20 Score=180.41 Aligned_cols=150 Identities=18% Similarity=0.294 Sum_probs=119.1
Q ss_pred HHHHHHHH---HHHhCcCCccchhhhhcccccc-------cCCCCc-eecccCCCcccccccCCC--CCc-chhHHHHHH
Q 028028 48 IIREQVKL---LYKRHKNTAFSWLRNIFHDCAV-------QSCDAS-LLLDSTRKTLSEKEMDRS--FGM-RNFRYIENI 113 (215)
Q Consensus 48 iV~~~v~~---~~~~~~~~a~~llRL~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N--~gL-~~~~~i~~i 113 (215)
.|+++|.. .+.+..-.++.++|++||++.+ ||++|+ |.+. +|++++.| .|| +.+.++++|
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL~~vl~~Le~I 502 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRLAKVLAVLEKI 502 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHHHHHHHHHHHH
Confidence 44555555 3556667889999999999996 899999 7764 69999999 899 689999999
Q ss_pred HHHHHhhCCCCcchhhHhhhhhccccccc---CCC--ceeeeCCCCCCCCCchhhhccCCCC---------------CCC
Q 028028 114 KEAVERECPGVVSCADILVLSGRDGVVAL---GGP--YIPLKTGRRDGRKSRAEILEQYLPD---------------HND 173 (215)
Q Consensus 114 K~~le~~cp~~VScADiialAar~av~~~---GGP--~~~V~~GR~D~~~s~~~~~~~~lP~---------------p~~ 173 (215)
|+++.. ..||+||+|+||+..|||.+ ||| .+++.+||.|...... +++...|. ...
T Consensus 503 k~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~ 578 (716)
T TIGR00198 503 QAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVT 578 (716)
T ss_pred HHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCC
Confidence 998731 27999999999999999999 898 5788899999976532 22222221 122
Q ss_pred CHHHHHHHHHhcCCCchhhhhhccc--cccccccCC
Q 028028 174 SMSVVLERFAAIGIDAPGLVALLVT--TIGLFHQDL 207 (215)
Q Consensus 174 ~~~~l~~~F~~~Gl~~~dlVALsGa--TiG~~hc~~ 207 (215)
....|+..|.++|||++|||||+|+ ++|++|..+
T Consensus 579 ~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s 614 (716)
T TIGR00198 579 PEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGS 614 (716)
T ss_pred HHHHHHHHHHhCCCChHHHHheecchhhccccCCCC
Confidence 3566889999999999999999998 999999754
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.81 E-value=5.6e-20 Score=178.51 Aligned_cols=150 Identities=16% Similarity=0.270 Sum_probs=123.7
Q ss_pred HHHHHHHHhCcCCccchhhhhcccccc-------cCCCCc-eecccCCCcccccccCCCC--Cc-chhHHHHHHHHHHHh
Q 028028 51 EQVKLLYKRHKNTAFSWLRNIFHDCAV-------QSCDAS-LLLDSTRKTLSEKEMDRSF--GM-RNFRYIENIKEAVER 119 (215)
Q Consensus 51 ~~v~~~~~~~~~~a~~llRL~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N~--gL-~~~~~i~~iK~~le~ 119 (215)
..++..+....-..+.++|++||++.+ ||++|+ |.|. +|++++.|+ +| +.+.+++.||+++..
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 567777888788899999999999996 899999 7775 599999998 88 589999999999853
Q ss_pred h-CC-CCcchhhHhhhhhccccccc---CC--CceeeeCCCCCCCCCchhhhc---cCCCCCC------------CCHHH
Q 028028 120 E-CP-GVVSCADILVLSGRDGVVAL---GG--PYIPLKTGRRDGRKSRAEILE---QYLPDHN------------DSMSV 177 (215)
Q Consensus 120 ~-cp-~~VScADiialAar~av~~~---GG--P~~~V~~GR~D~~~s~~~~~~---~~lP~p~------------~~~~~ 177 (215)
. -. ..||+||+|+||+..|||.+ || |.+++..||.|...... +++ ..+|... .....
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~ 594 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEEL 594 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHH
Confidence 2 22 46999999999999999998 58 99999999999976432 222 2456432 23478
Q ss_pred HHHHHHhcCCCchhhhhhccc--cccccccCC
Q 028028 178 VLERFAAIGIDAPGLVALLVT--TIGLFHQDL 207 (215)
Q Consensus 178 l~~~F~~~Gl~~~dlVALsGa--TiG~~hc~~ 207 (215)
|+..|.++|||++|||||+|+ ++|..|-.+
T Consensus 595 L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S 626 (726)
T PRK15061 595 LVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS 626 (726)
T ss_pred HHHHHHhCCCChHHHhheecchhhcccCCCCC
Confidence 999999999999999999999 899988654
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.5e-17 Score=153.18 Aligned_cols=150 Identities=18% Similarity=0.232 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHhCc--------CCccchhhhhcccccc-------cCCC-CceecccCCCcccccccCCCCCc-chhHHH
Q 028028 48 IIREQVKLLYKRHK--------NTAFSWLRNIFHDCAV-------QSCD-ASLLLDSTRKTLSEKEMDRSFGM-RNFRYI 110 (215)
Q Consensus 48 iV~~~v~~~~~~~~--------~~a~~llRL~FHDc~v-------~GcD-gSill~~~~~~~~E~~~~~N~gL-~~~~~i 110 (215)
.|+..++..+.+.. ..+|.+|||+||-+++ +|.. |.. +|.++...|.|.+| +++.++
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~q------RFaPlnSWPDN~nLDKarRLL 144 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQ------RFAPLNSWPDNANLDKARRLL 144 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCce------ecccccCCCcccchHHHHHHh
Confidence 55566666666542 3899999999999986 3433 333 34578899999999 699999
Q ss_pred HHHHHHHHhhCCCCcchhhHhhhhhcccccccCCCceeeeCCCCCCCCCchh----------------------------
Q 028028 111 ENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAE---------------------------- 162 (215)
Q Consensus 111 ~~iK~~le~~cp~~VScADiialAar~av~~~GGP~~~V~~GR~D~~~s~~~---------------------------- 162 (215)
..||+++ +..+|+||++.|++.+|++.+|++.|.+..||.|--.+...
T Consensus 145 WPIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaav 220 (730)
T COG0376 145 WPIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAV 220 (730)
T ss_pred hhHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhh
Confidence 9999998 56899999999999999999999999999999997665540
Q ss_pred ---------hhccCCCCCCCCHHHHHHHHHhcCCCchhhhhhccc--cccccccCC
Q 028028 163 ---------ILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLVT--TIGLFHQDL 207 (215)
Q Consensus 163 ---------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGa--TiG~~hc~~ 207 (215)
+-++..|.|-.+..+++..|++++++.+|+|||++. |+|++|...
T Consensus 221 qMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag 276 (730)
T COG0376 221 QMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAG 276 (730)
T ss_pred eeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCC
Confidence 113458999999999999999999999999999975 999999875
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.0022 Score=61.85 Aligned_cols=143 Identities=16% Similarity=0.279 Sum_probs=95.1
Q ss_pred HHHHHHHHhCcCCccchhhhhcccccc-------cCCCCcee-cccCCCcccccccCCCCC--c-chhHHHHHHHHHHHh
Q 028028 51 EQVKLLYKRHKNTAFSWLRNIFHDCAV-------QSCDASLL-LDSTRKTLSEKEMDRSFG--M-RNFRYIENIKEAVER 119 (215)
Q Consensus 51 ~~v~~~~~~~~~~a~~llRL~FHDc~v-------~GcDgSil-l~~~~~~~~E~~~~~N~g--L-~~~~~i~~iK~~le~ 119 (215)
..++..+....-....++--+|--+.+ +|.+|.-+ |. +-++.+.|.. | +-+.+++.|++.+.
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fn- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFN- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 456666666666677777777777654 67887654 43 4677777743 3 45777777777764
Q ss_pred hCCCCcchhhHhhhhhccccccc---CCCceee--eCCCCCCCCCchhhhccC-C--CC------------CCCCHHHHH
Q 028028 120 ECPGVVSCADILVLSGRDGVVAL---GGPYIPL--KTGRRDGRKSRAEILEQY-L--PD------------HNDSMSVVL 179 (215)
Q Consensus 120 ~cp~~VScADiialAar~av~~~---GGP~~~V--~~GR~D~~~s~~~~~~~~-l--P~------------p~~~~~~l~ 179 (215)
..||.||+|+|++..+|+.. .|-.+.| -.||.|....-. +++.- . |- .-..-.-|+
T Consensus 525 ---kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqt-Dv~sf~~LeP~aDGfRNy~~~~~~~~pe~~Lv 600 (730)
T COG0376 525 ---KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQT-DVESFAVLEPIADGFRNYVKKDYVLTPEELLV 600 (730)
T ss_pred ---CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhc-chhhhhcccccchhhhhhccCCCcCCHHHHHH
Confidence 46999999999999999874 6665544 569999865321 11110 1 11 111223355
Q ss_pred HHHHhcCCCchhhhhhccc--cccccc
Q 028028 180 ERFAAIGIDAPGLVALLVT--TIGLFH 204 (215)
Q Consensus 180 ~~F~~~Gl~~~dlVALsGa--TiG~~h 204 (215)
.+=.-.+|+.-||++|.|. .+|.-+
T Consensus 601 DkAqlL~LtapemtVLiGGlRvLg~n~ 627 (730)
T COG0376 601 DKAQLLTLTAPEMTVLIGGLRVLGANY 627 (730)
T ss_pred HHHHHhccCCccceEEEcceEeeccCC
Confidence 6666679999999999998 776543
No 19
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=68.70 E-value=4.8 Score=30.48 Aligned_cols=19 Identities=37% Similarity=0.350 Sum_probs=10.0
Q ss_pred CcchHHHHHHHHHHHHHHH
Q 028028 1 MGTKAVFLLLALLSFSAVS 19 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (215)
|+++..|||.++|+.+|++
T Consensus 1 MaSK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLI 19 (95)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 8877755444444433333
No 20
>PHA03163 hypothetical protein; Provisional
Probab=65.25 E-value=9.4 Score=28.75 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHhhhcccccCCCCCCCcCcccCCC
Q 028028 4 KAVFLLLALLSFSAVSLRSALAENEEDPGLVMNFYKDTC 42 (215)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~fY~~sC 42 (215)
+-|+++ +.+|++=-+.-..-....+.++-..+||+.+|
T Consensus 8 ~~i~~l-i~lcl~~nv~~~~~~~n~t~p~~~~~FYs~~C 45 (92)
T PHA03163 8 HGIFLL-ICLCLLDNVSQVLCQNNSTTPHDFDMFHQYDC 45 (92)
T ss_pred hhHHHH-HHHHHhhhhHHHHHhcCCCCCCCCcccccCCC
Confidence 345666 77777533322221244466778889999999
No 21
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=52.08 E-value=13 Score=30.15 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCcCcccCCCccHHHHHHHHHHHHHHhCcCCccchhhhhcccc
Q 028028 11 ALLSFSAVSLRSALAENEEDPGLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDC 75 (215)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~L~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc 75 (215)
-..|+.+++-.+| ..+.-..-..++|-++|-+. ..|.=-|-||||=
T Consensus 114 ~SvClSIlSMLSS--s~eKqrP~Dn~~Yvk~C~~g-----------------rsPk~TrWwfHDD 159 (161)
T KOG0427|consen 114 QSVCLSILSMLSS--SKEKQRPTDNDRYVKNCKNG-----------------RSPKETRWWFHDD 159 (161)
T ss_pred HHHHHHHHHHHcc--CccccCCCccchhhhhccCC-----------------CCcccceeeeccC
Confidence 4567666665554 22233346778999999763 2455568999983
No 22
>PF14919 MTBP_mid: MDM2-binding
Probab=48.95 E-value=20 Score=33.13 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=42.2
Q ss_pred cchhHHHHHHHHHHHhhCCCCcchhhHhhhhhcccccccCCCceeeeCCCCCCCCCchhhhccCCCCCCCCHHHHHHHHH
Q 028028 104 MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFA 183 (215)
Q Consensus 104 L~~~~~i~~iK~~le~~cp~~VScADiialAar~av~~~GGP~~~V~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~ 183 (215)
|..+|.++++|.+.... ..+ | .-.-.+|++|+...+.. -.+..+|+++|.
T Consensus 272 LQNlEn~ek~kQK~R~~---~l~----------------~--SseqLLG~Kdg~r~s~t---------LLDAkELLK~FT 321 (342)
T PF14919_consen 272 LQNLENFEKAKQKMRTG---SLP----------------R--SSEQLLGHKDGQRDSVT---------LLDAKELLKYFT 321 (342)
T ss_pred HHHHHHHHHHHHHHhcc---cCC----------------C--CHHHhcCCCCCCCCCcc---------cccHHHHHhhcC
Confidence 45788899999887431 100 1 11446899999776543 247889999999
Q ss_pred hcCCCchhhh
Q 028028 184 AIGIDAPGLV 193 (215)
Q Consensus 184 ~~Gl~~~dlV 193 (215)
.-|+-..|+-
T Consensus 322 ~dGlPvgDLQ 331 (342)
T PF14919_consen 322 SDGLPVGDLQ 331 (342)
T ss_pred CCCcccCcCc
Confidence 9999988864
No 23
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=36.55 E-value=9.7 Score=29.06 Aligned_cols=15 Identities=27% Similarity=0.930 Sum_probs=10.2
Q ss_pred hcccccccCCCCceec
Q 028028 71 IFHDCAVQSCDASLLL 86 (215)
Q Consensus 71 ~FHDc~v~GcDgSill 86 (215)
.+|+|| +||.|+...
T Consensus 4 V~HeC~-g~c~G~f~P 18 (96)
T PF08782_consen 4 VYHECF-GGCRGSFIP 18 (96)
T ss_dssp EEE-ST-T-EEEEE-G
T ss_pred eEEeec-CccceEech
Confidence 589998 899999874
No 24
>PTZ00411 transaldolase-like protein; Provisional
Probab=36.13 E-value=25 Score=32.39 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=37.6
Q ss_pred cCCCceeeeCCCCCCCCCchhhhccCCCC---CCCCHHHHHHHHHhcCC----------Cchhhhhhccc---ccc
Q 028028 142 LGGPYIPLKTGRRDGRKSRAEILEQYLPD---HNDSMSVVLERFAAIGI----------DAPGLVALLVT---TIG 201 (215)
Q Consensus 142 ~GGP~~~V~~GR~D~~~s~~~~~~~~lP~---p~~~~~~l~~~F~~~Gl----------~~~dlVALsGa---TiG 201 (215)
.|-.++..++||.+...-.+.......+. +-..+.++.++|++.|+ +.+|+.+|.|+ ||.
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~lTi~ 255 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKLTIS 255 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEEeCC
Confidence 47788999999985532222111111111 12357788899998887 45677888888 655
No 25
>PHA03156 hypothetical protein; Provisional
Probab=34.38 E-value=39 Score=25.41 Aligned_cols=9 Identities=44% Similarity=1.091 Sum_probs=8.3
Q ss_pred CcCcccCCC
Q 028028 34 VMNFYKDTC 42 (215)
Q Consensus 34 ~~~fY~~sC 42 (215)
..+||+.+|
T Consensus 36 ~~~FY~~~C 44 (90)
T PHA03156 36 NNNFYSNSC 44 (90)
T ss_pred CCCccccCc
Confidence 689999999
No 26
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.62 E-value=1.2e+02 Score=24.29 Aligned_cols=61 Identities=16% Similarity=0.109 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhcccccCCC----C-CCCcCcccCCCccHHHHHHHHHHHHHHhCcCCccchhhhhc
Q 028028 11 ALLSFSAVSLRSALAENEED----P-GLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIF 72 (215)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~----~-~L~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~F 72 (215)
+..|+||.+|..-++....+ + .=+++|-.+.--+ |.-|++.+...+.+...+.|.=+|+++
T Consensus 7 i~tc~lL~~f~aqga~feep~as~aqpgs~~~~~~~vhD-eeHIkeHLegki~~~a~mtpeqlqfHY 72 (144)
T KOG4065|consen 7 ISTCFLLLVFEAQGAKFEEPAASFAQPGSMGLDKKEVHD-EEHIKEHLEGKIEKVAKMTPEQLQFHY 72 (144)
T ss_pred HHHHHHHHHHhcChhhhcCchhhhcCCcccccccccccc-HHHHHHHHhcccchhhhCCHHHHhhhh
Confidence 55688888876543333111 1 2345565555444 445667888888777788999888766
No 27
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=32.74 E-value=33 Score=23.36 Aligned_cols=31 Identities=35% Similarity=0.606 Sum_probs=22.8
Q ss_pred Hhhhhh---cccccccCCCceeeeCCCCCCCCCc
Q 028028 130 ILVLSG---RDGVVALGGPYIPLKTGRRDGRKSR 160 (215)
Q Consensus 130 iialAa---r~av~~~GGP~~~V~~GR~D~~~s~ 160 (215)
++++|+ .|-...+.||.+++-+||.--..|+
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptpsD 42 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPSD 42 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChhh
Confidence 455555 4556778999999999998765544
No 28
>KOG3803 consensus Transcription factor containing C2HC type Zn finger [Transcription]
Probab=27.29 E-value=38 Score=34.18 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=25.1
Q ss_pred CCCccHHHHHHHHHHHHHHhCcCCccchhhhhcccccccCCCCceeccc
Q 028028 40 DTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDS 88 (215)
Q Consensus 40 ~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~v~GcDgSill~~ 88 (215)
+-||-+|+++|..+...-++ --|-+-|||||=-+.+
T Consensus 670 sgcpladks~Rslma~~sqe-------------LkCPTPGCDGSGHiTG 705 (968)
T KOG3803|consen 670 SGCPLADKSLRSLMAAGSQE-------------LKCPTPGCDGSGHITG 705 (968)
T ss_pred cCCchhHHHHHHHHhccccc-------------ccCCCCCCCCCCcccc
Confidence 35999999887766543222 1377899999987653
No 29
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=26.24 E-value=45 Score=24.42 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCCchhhhhhccc
Q 028028 176 SVVLERFAAIGIDAPGLVALLVT 198 (215)
Q Consensus 176 ~~l~~~F~~~Gl~~~dlVALsGa 198 (215)
+.|-..|++.||+.+||-.|+-+
T Consensus 11 DtLs~iF~~~gls~~dl~~v~~~ 33 (85)
T PF04225_consen 11 DTLSTIFRRAGLSASDLYAVLEA 33 (85)
T ss_dssp --HHHHHHHTT--HHHHHHHHHH
T ss_pred CcHHHHHHHcCCCHHHHHHHHhc
Confidence 56788999999999999998864
No 30
>PF15240 Pro-rich: Proline-rich
Probab=24.16 E-value=60 Score=27.46 Aligned_cols=15 Identities=53% Similarity=0.658 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhhc
Q 028028 8 LLLALLSFSAVSLRSA 23 (215)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (215)
|+ |+|+..|++|+++
T Consensus 2 Ll-VLLSvALLALSSA 16 (179)
T PF15240_consen 2 LL-VLLSVALLALSSA 16 (179)
T ss_pred hh-HHHHHHHHHhhhc
Confidence 44 6777777777775
No 31
>KOG3563 consensus Forkhead/HNF-3-related transcription factor [Transcription]
Probab=24.15 E-value=27 Score=32.87 Aligned_cols=8 Identities=50% Similarity=0.862 Sum_probs=7.5
Q ss_pred hhcccccc
Q 028028 70 NIFHDCAV 77 (215)
Q Consensus 70 L~FHDc~v 77 (215)
|-|.||||
T Consensus 225 LSFNDCFV 232 (454)
T KOG3563|consen 225 LSFNDCFV 232 (454)
T ss_pred ccccceee
Confidence 88999998
No 32
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.80 E-value=78 Score=22.83 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCcCCccchhhhhccccc
Q 028028 48 IIREQVKLLYKRHKNTAFSWLRNIFHDCA 76 (215)
Q Consensus 48 iV~~~v~~~~~~~~~~a~~llRL~FHDc~ 76 (215)
+.|+.+++.+++||..-...||+.+--.+
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~qmG 52 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQMG 52 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence 88999999999999999999998876654
No 33
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=21.84 E-value=1e+02 Score=27.39 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=17.9
Q ss_pred CcCccc----CCCccHHHHHHHHHHHHHHhCcCCccchhhhhcc
Q 028028 34 VMNFYK----DTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFH 73 (215)
Q Consensus 34 ~~~fY~----~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FH 73 (215)
.+..|. +|||.+-... ..+.+++. +|=|.||
T Consensus 44 VVELfTSQGCsSCPPAd~~l-----~k~a~~~~----vlALsyh 78 (261)
T COG5429 44 VVELFTSQGCSSCPPADANL-----AKLADDPG----VLALSYH 78 (261)
T ss_pred EEEEeecCCcCCCChHHHHH-----HHhccCCC----EEEEEEe
Confidence 345666 6899985443 33344444 5556666
No 34
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.56 E-value=42 Score=27.71 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHHHHHhhhcccccCCCCCCCcCccc
Q 028028 3 TKAVFLLLALLSFSAVSLRSALAENEEDPGLVMNFYK 39 (215)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~fY~ 39 (215)
+++++++ ++++++.+..+.+++-.+-...+.+ ||.
T Consensus 5 r~rRl~~-v~~~~~~~~~a~~Lv~~al~~n~~y-F~t 39 (155)
T PRK13159 5 RKQRLWL-VIGVLTAAALAVTLIVLALQRNMSY-LFT 39 (155)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHhhhCceE-EEC
Confidence 3445554 3444333333333333333344543 665
Done!