BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028030
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DRN|A Chain A, The Crystal Structure Of Bcp1 From Sulfolobus Sulfataricus
pdb|3DRN|B Chain B, The Crystal Structure Of Bcp1 From Sulfolobus Sulfataricus
Length = 161
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 93/147 (63%), Gaps = 4/147 (2%)
Query: 68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKK 126
V G P F G +SLS + GK +V+YFYP D+TPG T++A AFRD+++ K
Sbjct: 2 VKVGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKD 61
Query: 127 AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILD 186
VIG+S DD +SHK F +KY+LP+ L+SD K+R+ +G F LP R T+++D
Sbjct: 62 YDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKG-FI--LPARITFVID 118
Query: 187 KNGVVQLIYNNQFQPEKHIDETLKFLQ 213
K G+++ IYN+Q P H++E LK L+
Sbjct: 119 KKGIIRHIYNSQMNPANHVNEALKALK 145
>pdb|2YWN|A Chain A, Crystal Structure Of Peroxiredoxin-Like Protein From
Sulfolobus Tokodaii
pdb|4G2E|A Chain A, Crystal Structure Of A Dimeric Prxq From Sulfolobus
Tokodaii
Length = 157
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 6/130 (4%)
Query: 68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
V G+ P F L D E + V LS KGK VV+ FYPA T CTK+ C FRDS KF +
Sbjct: 4 VEIGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV 63
Query: 128 GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPG-----RQT 182
A V+GIS D S+KAF + +L +T+LSD +V K++ V + F +LPG R
Sbjct: 64 NAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWE-FPALPGYVLAKRAV 122
Query: 183 YILDKNGVVQ 192
+++DK G V+
Sbjct: 123 FVIDKEGKVR 132
>pdb|3HJP|A Chain A, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
pdb|3HJP|B Chain B, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
pdb|3HJP|C Chain C, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
pdb|3HJP|D Chain D, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
Length = 164
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 13/134 (9%)
Query: 68 VSKGQAPPSFTLKDQEGRNVSL-SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK 126
V G+ P L D + + V + S FKGK VV+ FYPA T TK+ FRDS KF +
Sbjct: 2 VEIGEKAPEIELVDTDLKKVKIPSDFKGKVVVLAFYPAAFTSVSTKEMSTFRDSMAKFNE 61
Query: 127 AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLP-------- 178
A VIGIS D S+KAF ++ ++ +T++SD + K +GV G LP
Sbjct: 62 VNAVVIGISVDPPFSNKAFKEQNKINFTIVSDFNREAVKAYGVA----GELPILKGYVLA 117
Query: 179 GRQTYILDKNGVVQ 192
R +++DKNG+V+
Sbjct: 118 KRSVFVIDKNGIVR 131
>pdb|4GQC|A Chain A, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q
Enzyme In Fully- Folded And Locally-unfolded
Conformations
pdb|4GQC|B Chain B, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q
Enzyme In Fully- Folded And Locally-unfolded
Conformations
pdb|4GQC|C Chain C, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q
Enzyme In Fully- Folded And Locally-unfolded
Conformations
pdb|4GQC|D Chain D, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q
Enzyme In Fully- Folded And Locally-unfolded
Conformations
Length = 164
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 68 VSKGQAPPSFTLKDQEGRNVSLSKF--KGKPVVVYFYPADETPGCTKQACAFRDSYEKFK 125
V G+ P FTL +Q+ V+L + +G+P V+ F+PA +P CTK+ C FRD + +
Sbjct: 5 VELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLE 64
Query: 126 KAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSL---PGRQT 182
KA AEV+ IS D K F + RL + LLSD +V K + V + L R
Sbjct: 65 KANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAV 124
Query: 183 YILDKNGVV 191
+I+ +G V
Sbjct: 125 FIVKPDGTV 133
>pdb|2CX3|A Chain A, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-1 Crystal)
pdb|2CX3|B Chain B, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-1 Crystal)
pdb|2CX3|C Chain C, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-1 Crystal)
pdb|2CX3|D Chain D, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-1 Crystal)
pdb|2CX4|A Chain A, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|B Chain B, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|C Chain C, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|D Chain D, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|E Chain E, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|F Chain F, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|G Chain G, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|H Chain H, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|4GQF|A Chain A, Aeropyrum Pernix Peroxiredoxin Q Enzyme In The Locally
Unfolded Conformation
pdb|4GQF|B Chain B, Aeropyrum Pernix Peroxiredoxin Q Enzyme In The Locally
Unfolded Conformation
Length = 164
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 68 VSKGQAPPSFTLKDQEGRNVSLSKF--KGKPVVVYFYPADETPGCTKQACAFRDSYEKFK 125
V G+ P FTL +Q+ V+L + +G+P V+ F+PA +P CTK+ C FRD + +
Sbjct: 5 VELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKXAQLE 64
Query: 126 KAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV-PADFFG--SLPGRQT 182
KA AEV+ IS D K F + RL + LLSD +V K + V D G + R
Sbjct: 65 KANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKXVAKRAV 124
Query: 183 YILDKNGVV 191
+I+ +G V
Sbjct: 125 FIVKPDGTV 133
>pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin,
Hbp23.
pdb|1QQ2|B Chain B, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin,
Hbp23
Length = 199
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 65 SAKVSKGQAPPSF----TLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 120
S G PSF + D + +++SLS +KGK VV +FYP D T C + AF D
Sbjct: 3 SGNAKIGHPAPSFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDR 62
Query: 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGV-PAD 172
E+FKK +VIG S D SH A+ + + L+SD + +++GV AD
Sbjct: 63 AEEFKKLNCQVIGASVDSHFSHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKAD 122
Query: 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
+ R +I+D G+++ I N + +DE L+ +Q+
Sbjct: 123 --EGISFRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQA 162
>pdb|2RII|A Chain A, Crystal Structure Of Human Peroxiredoxin I In Complex With
Sulfiredoxin
pdb|2RII|B Chain B, Crystal Structure Of Human Peroxiredoxin I In Complex With
Sulfiredoxin
Length = 199
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 14/162 (8%)
Query: 65 SAKVSKGQAPPSF----TLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 120
S G P+F + D + +++SLS +KGK VV +FYP D T C + AF D
Sbjct: 3 SGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDR 62
Query: 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGV-PAD 172
E+FKK ++VIG S D H A+ + + L+SD + +++GV AD
Sbjct: 63 AEEFKKLNSQVIGASVDSHFEHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKAD 122
Query: 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
+ R +I+D G+++ I N + +DETL+ +Q+
Sbjct: 123 --EGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQA 162
>pdb|1ZYE|A Chain A, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|B Chain B, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|C Chain C, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|D Chain D, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|E Chain E, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|F Chain F, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|G Chain G, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|H Chain H, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|I Chain I, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|J Chain J, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|K Chain K, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|L Chain L, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
Length = 220
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 83 EGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH 142
E + +SL FKGK +V++FYP D T C + AF D +F EV+ +S D SH
Sbjct: 45 EFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSH 104
Query: 143 KAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY 195
A+ R + LLSD ++ +++GV + G L R +I+D NGV++ +
Sbjct: 105 LAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG-LALRGLFIIDPNGVIKHLS 163
Query: 196 NNQFQPEKHIDETLKFLQS 214
N + ++ETL+ +++
Sbjct: 164 VNDLPVGRSVEETLRLVKA 182
>pdb|2PN8|A Chain A, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|B Chain B, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|C Chain C, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|D Chain D, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|E Chain E, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|F Chain F, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|G Chain G, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|H Chain H, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|I Chain I, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|J Chain J, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
Length = 211
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 17/175 (9%)
Query: 49 SSNLPIPSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETP 108
SS + + + + S+ A +G A + D E + + L+ ++GK +V +FYP D T
Sbjct: 8 SSGVDLGTENLYFQSMPAPYWEGTA-----VIDGEFKELKLTDYRGKYLVFFFYPLDFTF 62
Query: 109 GCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK---------YRLPYTLLSDE 159
C + AF D E+F+ EV+ S D +H A+ R+P LLSD
Sbjct: 63 VCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIP--LLSDL 120
Query: 160 GNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
+++ K++GV + G R +I+D G+++ I N + +DETL+ +Q+
Sbjct: 121 THQISKDYGVYLEDSGHTL-RGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQA 174
>pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|B Chain B, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|C Chain C, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|D Chain D, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|E Chain E, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|F Chain F, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|G Chain G, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|H Chain H, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|I Chain I, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|J Chain J, Thioredoxin Peroxidase B From Red Blood Cells
Length = 197
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 11/160 (6%)
Query: 65 SAKVSKGQAPPSF---TLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY 121
S G+ P F + D + V LS +KGK VV++FYP D T + AF +
Sbjct: 2 SGNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVXPTEIIAFSNRA 61
Query: 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFF 174
E F+K G EV+G+S D +H A+ R L LL+D ++ +++GV
Sbjct: 62 EDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDE 121
Query: 175 GSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
G + R +I+D GV++ I N + +DE L+ +Q+
Sbjct: 122 G-IAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQA 160
>pdb|3TKP|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
The Reduced Form
pdb|3TKP|B Chain B, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
The Reduced Form
pdb|3TKP|C Chain C, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
The Reduced Form
pdb|3TKP|D Chain D, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
The Reduced Form
pdb|3TKP|E Chain E, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
The Reduced Form
pdb|3TKQ|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With Mixed Conformation
pdb|3TKQ|B Chain B, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With Mixed Conformation
pdb|3TKQ|C Chain C, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With Mixed Conformation
pdb|3TKQ|D Chain D, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With Mixed Conformation
pdb|3TKQ|E Chain E, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With Mixed Conformation
pdb|3TKS|E Chain E, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
Three Different Redox States
Length = 246
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 81 DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140
D E + + L+ ++GK +V +FYP D T C + AF D E+F+ EV+ S D
Sbjct: 70 DGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQF 129
Query: 141 SHKAFAKK---------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
+H A+ R+P LLSD +++ K++GV + G R +I+D G++
Sbjct: 130 THLAWINTPRRQGGLGPIRIP--LLSDLTHQISKDYGVYLEDSGHTL-RGLFIIDDKGIL 186
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
+ I N + +DETL+ +Q+
Sbjct: 187 RQITLNDLPVGRSVDETLRLVQA 209
>pdb|3ZTL|A Chain A, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|B Chain B, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|C Chain C, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|D Chain D, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|E Chain E, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|F Chain F, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|G Chain G, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|H Chain H, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|I Chain I, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|J Chain J, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
Length = 222
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 13/152 (8%)
Query: 70 KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGA 129
KGQA + + E + + L ++GK VV++FYPAD T C + AF D E+F
Sbjct: 50 KGQA-----VINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNC 104
Query: 130 EVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
+VI S D SH A+ R + LL+D ++ K +GV + G+ R
Sbjct: 105 QVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGN-AFRGL 163
Query: 183 YILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
+I+D NG+++ I N + +DETL+ L +
Sbjct: 164 FIIDPNGILRQITINDKPVGRSVDETLRLLDA 195
>pdb|3TJK|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Reduced Form
pdb|3TJK|B Chain B, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Reduced Form
pdb|3TJK|C Chain C, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Reduced Form
pdb|3TJK|D Chain D, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Reduced Form
pdb|3TJK|E Chain E, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Reduced Form
Length = 254
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 81 DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140
D E + + L+ ++GK +V +FYP D T C + AF D E+F+ EV+ S D
Sbjct: 78 DGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQF 137
Query: 141 SHKAFAKK---------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
+H A+ R+P LLSD +++ K++GV + G R +I+D G++
Sbjct: 138 THLAWINTPRRQGGLGPIRIP--LLSDLTHQISKDYGVYLEDSGHTL-RGLFIIDDKGIL 194
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
+ I N + +DETL+ +Q+
Sbjct: 195 RQITLNDLPVGRSVDETLRLVQA 217
>pdb|3TJF|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Reduced Form
pdb|3TJF|B Chain B, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Reduced Form
pdb|3TJF|C Chain C, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Reduced Form
pdb|3TJF|D Chain D, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Reduced Form
pdb|3TJF|E Chain E, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Reduced Form
pdb|3TJG|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Oxidized Form
pdb|3TJG|B Chain B, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Oxidized Form
pdb|3TJG|C Chain C, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Oxidized Form
pdb|3TJG|D Chain D, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Oxidized Form
pdb|3TJG|E Chain E, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Oxidized Form
Length = 254
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 81 DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140
D E + + L+ ++GK +V +FYP D T C + AF D E+F+ EV+ S D
Sbjct: 78 DGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQF 137
Query: 141 SHKAFAKK---------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
+H A+ R+P LLSD +++ K++GV + G R +I+D G++
Sbjct: 138 THLAWINTPRRQGGLGPIRIP--LLSDLTHQISKDYGVYLEDSGHTL-RGLFIIDDKGIL 194
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
+ I N + +DETL+ +Q+
Sbjct: 195 RQITLNDLPVGRSVDETLRLVQA 217
>pdb|3TJB|A Chain A, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv
pdb|3TJB|B Chain B, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv
pdb|3TJB|C Chain C, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv
pdb|3TJB|D Chain D, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv
pdb|3TJB|E Chain E, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv
Length = 254
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 81 DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140
D E + + L+ ++GK +V +FYP D T C + AF D E+F+ EV+ S D
Sbjct: 78 DGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQF 137
Query: 141 SHKAFAKK---------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
+H A+ R+P LLSD +++ K++GV + G R +I+D G++
Sbjct: 138 THLAWINTPRRQGGLGPIRIP--LLSDLTHQISKDYGVYLEDSGHTL-RGLFIIDDKGIL 194
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
+ I N + +DETL+ +Q+
Sbjct: 195 RQITLNDLPVGRSVDETLRLVQA 217
>pdb|3ZVJ|A Chain A, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|B Chain B, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|C Chain C, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|E Chain E, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|F Chain F, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|G Chain G, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|H Chain H, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|I Chain I, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|J Chain J, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|K Chain K, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|L Chain L, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|M Chain M, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|N Chain N, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|O Chain O, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|P Chain P, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|Q Chain Q, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|R Chain R, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|S Chain S, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|T Chain T, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
Length = 219
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 13/152 (8%)
Query: 70 KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGA 129
KGQA + + E + + L ++GK VV++FYPAD T C + AF D E+F
Sbjct: 47 KGQA-----VINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNC 101
Query: 130 EVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
+VI S D SH A+ R + LL+D ++ K +GV + G+ R
Sbjct: 102 QVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGN-AFRGL 160
Query: 183 YILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
+I+D NG+++ I N + +DETL+ L +
Sbjct: 161 FIIDPNGILRQITINDKPVGRSVDETLRLLDA 192
>pdb|3ZVJ|D Chain D, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
Length = 219
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 13/152 (8%)
Query: 70 KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGA 129
KGQA + + E + + L ++GK VV++FYPAD T C + AF D E+F
Sbjct: 47 KGQA-----VINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNC 101
Query: 130 EVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
+VI S D SH A+ R + LL+D ++ K +GV + G+ R
Sbjct: 102 QVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGN-AFRGL 160
Query: 183 YILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
+I+D NG+++ I N + +DETL+ L +
Sbjct: 161 FIIDPNGILRQITLNDKPVGRSVDETLRLLDA 192
>pdb|3TKR|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|I Chain I, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|G Chain G, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|C Chain C, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|F Chain F, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|D Chain D, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|B Chain B, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|H Chain H, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|E Chain E, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|J Chain J, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
Length = 246
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 81 DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140
D E + + L+ ++GK +V +FYP D T C + AF D E+F+ EV+ S D
Sbjct: 70 DGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQF 129
Query: 141 SHKAFAKK---------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
H A+ R+P LLSD +++ K++GV + G R +I+D G++
Sbjct: 130 EHLAWINTPRRQGGLGPIRIP--LLSDLTHQISKDYGVYLEDSGHTL-RGLFIIDDKGIL 186
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
+ I N + +DETL+ +Q+
Sbjct: 187 RQITLNDLPVGRSVDETLRLVQA 209
>pdb|2Z9S|A Chain A, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I,
Cys52ser Mutant
pdb|2Z9S|B Chain B, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I,
Cys52ser Mutant
pdb|2Z9S|C Chain C, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I,
Cys52ser Mutant
pdb|2Z9S|D Chain D, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I,
Cys52ser Mutant
pdb|2Z9S|E Chain E, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I,
Cys52ser Mutant
pdb|2Z9S|F Chain F, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I,
Cys52ser Mutant
pdb|2Z9S|G Chain G, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I,
Cys52ser Mutant
pdb|2Z9S|H Chain H, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I,
Cys52ser Mutant
pdb|2Z9S|I Chain I, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I,
Cys52ser Mutant
pdb|2Z9S|J Chain J, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I,
Cys52ser Mutant
Length = 199
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 14/162 (8%)
Query: 65 SAKVSKGQAPPSF----TLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 120
S G PSF + D + +++SLS +KGK VV +FYP D T + AF D
Sbjct: 3 SGNAKIGHPAPSFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVSPTEIIAFSDR 62
Query: 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGV-PAD 172
E+FKK +VIG S D H A+ + + L+SD + +++GV AD
Sbjct: 63 AEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKAD 122
Query: 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
+ R +I+D G+++ I N + +DE L+ +Q+
Sbjct: 123 --EGISFRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQA 162
>pdb|2A4V|A Chain A, Crystal Structure Of A Truncated Mutant Of Yeast Nuclear
Thiol Peroxidase
Length = 159
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 71 GQAPPSFTLKDQEGRNVSLSKF-KGKPVVVYF-YPADETPGCTKQACAFRDSYEKFKKAG 128
G P +L +++ ++SL K + VVV+F YP TPG T+QA FRD+Y++ K+
Sbjct: 10 GDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA 69
Query: 129 AEVIGISGDDSSSHKAFAKKYRLPYTLLSD 158
A V G+S D +S K F K LPY LLSD
Sbjct: 70 A-VFGLSADSVTSQKKFQSKQNLPYHLLSD 98
>pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|B Chain B, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|C Chain C, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|D Chain D, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|E Chain E, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
Length = 240
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 8/139 (5%)
Query: 83 EGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH 142
E + + LS ++GK +V +FYP D T C + AF D +F+ EV+ S D +H
Sbjct: 66 EFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTH 125
Query: 143 KAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY 195
A+ R + LLSD +++ K++GV + G R +I+D+ GV++ I
Sbjct: 126 LAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTL-RGLFIIDEKGVLRQIT 184
Query: 196 NNQFQPEKHIDETLKFLQS 214
N + +DETL+ +Q+
Sbjct: 185 MNDLPVGRSVDETLRLVQA 203
>pdb|3HY2|A Chain A, Crystal Structure Of Sulfiredoxin In Complex With
Peroxiredoxin I And Atp:mg2+
pdb|3HY2|B Chain B, Crystal Structure Of Sulfiredoxin In Complex With
Peroxiredoxin I And Atp:mg2+
Length = 206
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
Query: 65 SAKVSKGQAPPSF----TLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 120
S G P+F + D + +++SLS +KGK VV +FYP D T + AF D
Sbjct: 3 SGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVDPTEIIAFSDR 62
Query: 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGV-PAD 172
E+FKK ++VIG S D H + + + L+SD + +++GV AD
Sbjct: 63 AEEFKKLNSQVIGASVDSHFEHLEWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKAD 122
Query: 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
+ R +I+D G+++ I N + +DETL+ +Q+
Sbjct: 123 --EGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQA 162
>pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I
Length = 192
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 70 KGQAPPSFTLKDQEGRN----VSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKF 124
+GQAP SF + G N VSLS F GK V++YFYP D T C + A + + F
Sbjct: 3 QGQAP-SFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSF 61
Query: 125 KKAGAEVIGISGDDSSSHKAFAKK-------YRLPYTLLSDEGNKVRKEWGVPADFFGSL 177
K+ E++G S D +H A+ K + +TL+SD + + + V F S+
Sbjct: 62 KERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVL--FNESV 119
Query: 178 PGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
R ++DK GVVQ + N + +DE L+ + +
Sbjct: 120 ALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDA 156
>pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|B Chain B, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|C Chain C, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|D Chain D, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|E Chain E, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
Length = 219
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 85 RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA 144
+ +SLS +KGK VV++FYP D T C + AF DS +F + EV+ S D +H
Sbjct: 47 KKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQ 106
Query: 145 FAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197
+ + R + +L+D+ + + +GV + G + R +I+D +G+++ I N
Sbjct: 107 WTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQG-VAYRGLFIIDPHGMLRQITVN 165
Query: 198 QFQPEKHIDETLKFLQS 214
+ ++E L+ L++
Sbjct: 166 DMPVGRSVEEVLRLLEA 182
>pdb|3TKS|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
Three Different Redox States
pdb|3TKS|B Chain B, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
Three Different Redox States
pdb|3TKS|C Chain C, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
Three Different Redox States
pdb|3TKS|D Chain D, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
Three Different Redox States
Length = 246
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 81 DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140
D E + + L+ ++GK +V +FYP D T + AF D E+F+ EV+ S D
Sbjct: 70 DGEFKELKLTDYRGKYLVFFFYPLDFTFVXPTEIIAFGDRLEEFRSINTEVVACSVDSQF 129
Query: 141 SHKAFAKK---------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
+H A+ R+P LLSD +++ K++GV + G R +I+D G++
Sbjct: 130 THLAWINTPRRQGGLGPIRIP--LLSDLTHQISKDYGVYLEDSGHTL-RGLFIIDDKGIL 186
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
+ I N + +DETL+ +Q+
Sbjct: 187 RQITLNDLPVGRSVDETLRLVQA 209
>pdb|3TJJ|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Sulfenylated Form
pdb|3TJJ|B Chain B, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Sulfenylated Form
pdb|3TJJ|C Chain C, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Sulfenylated Form
pdb|3TJJ|D Chain D, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Sulfenylated Form
pdb|3TJJ|E Chain E, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Sulfenylated Form
Length = 254
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 81 DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140
D E + + L+ ++GK +V +FYP D T + AF D E+F+ EV+ S D
Sbjct: 78 DGEFKELKLTDYRGKYLVFFFYPLDFTFVXPTEIIAFGDRLEEFRSINTEVVACSVDSQF 137
Query: 141 SHKAFAKK---------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
+H A+ R+P LLSD +++ K++GV + G R +I+D G++
Sbjct: 138 THLAWINTPRRQGGLGPIRIP--LLSDLTHQISKDYGVYLEDSGHTL-RGLFIIDDKGIL 194
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
+ I N + +DETL+ +Q+
Sbjct: 195 RQITLNDLPVGRSVDETLRLVQA 217
>pdb|2H66|A Chain A, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|B Chain B, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|C Chain C, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|D Chain D, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|E Chain E, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|F Chain F, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|G Chain G, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|H Chain H, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|I Chain I, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|J Chain J, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2I81|A Chain A, Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin,
Reduced
pdb|2I81|B Chain B, Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin,
Reduced
pdb|2I81|C Chain C, Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin,
Reduced
pdb|2I81|D Chain D, Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin,
Reduced
pdb|2I81|E Chain E, Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin,
Reduced
Length = 213
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Query: 71 GQAPPSFTLKDQEGRN----VSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFK 125
G+ P F + G N V+L++F GK V++YFYP D T C + A + + F
Sbjct: 24 GKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFH 83
Query: 126 KAGAEVIGISGDDSSSHKAFAKK-------YRLPYTLLSDEGNKVRKEWGVPADFFGSLP 178
+ E++G S D +H A+ K + +TLLSD + K++ V D S+
Sbjct: 84 ERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFD--DSVS 141
Query: 179 GRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
R ++D NG+VQ + N + +DE L+ + +
Sbjct: 142 LRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDA 177
>pdb|3GKK|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of
Xanthomonas Campestris Bacterioferritin Comigratory
Protein From The Trapped IntermediateLIGAND COMPLEX
STRUCTURES
Length = 163
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 84 GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK 143
G +L G +V+YFYP D TPGCT + F +F KAGA+++G+S D SH
Sbjct: 25 GTQTTLRAHAGHWLVIYFYPKDSTPGCTTEGLDFNALLPEFDKAGAKILGVSRDSVKSHD 84
Query: 144 AFAKKYRLPYTLLSDEGNKVRKEWGV--PADFFG-SLPG--RQTYILDKNGVVQLIYNNQ 198
F K + L+SD + + + V + +G + G R T++L G V + +
Sbjct: 85 NFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-RK 143
Query: 199 FQPEKHIDETLKFLQS 214
+ H D L L++
Sbjct: 144 VKVAGHADAVLAALKA 159
>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|B Chain B, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|C Chain C, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|D Chain D, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|E Chain E, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|F Chain F, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|G Chain G, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|H Chain H, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|I Chain I, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|J Chain J, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
Length = 249
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
Query: 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
+GK V++ +PAD TP CT + +F YE F++ G ++IG+S D SH K + +++
Sbjct: 32 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 91
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
R+P+ +++D V + G+ + R +I+D GV++ + + + +D
Sbjct: 92 IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVD 151
Query: 207 ETLKFLQS 214
E L+ +++
Sbjct: 152 EILRIVKA 159
>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
Length = 250
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
Query: 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
+GK V++ +PAD TP CT + +F YE F++ G ++IG+S D SH K + +++
Sbjct: 33 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 92
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
R+P+ +++D V + G+ + R +I+D GV++ + + + +D
Sbjct: 93 IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVD 152
Query: 207 ETLKFLQS 214
E L+ +++
Sbjct: 153 EILRIVKA 160
>pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|B Chain B, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|C Chain C, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|D Chain D, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|E Chain E, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|F Chain F, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|G Chain G, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|H Chain H, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|I Chain I, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|J Chain J, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
Length = 249
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
Query: 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
+GK V++ +PAD TP CT + +F YE F++ G ++IG+S D SH K + +++
Sbjct: 32 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 91
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
R+P+ +++D V + G+ + R +I+D GV++ + + + +D
Sbjct: 92 IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVD 151
Query: 207 ETLKFLQS 214
E L+ +++
Sbjct: 152 EILRIVKA 159
>pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|B Chain B, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|C Chain C, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|D Chain D, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|E Chain E, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|F Chain F, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|G Chain G, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|H Chain H, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|I Chain I, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|J Chain J, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
Length = 202
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 85 RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA 144
+ V+L+ +KGK +V++FYP D T C + C F D ++F G EV+ S D SH A
Sbjct: 27 KKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLA 86
Query: 145 FAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197
+ R + +L+D+ + K +GV + G + R +I+D ++ I N
Sbjct: 87 WTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDG-VAYRGLFIIDPKQNLRQITVN 145
Query: 198 QFQPEKHIDETLKFLQS 214
+ +DE L+ +++
Sbjct: 146 DLPVGRDVDEALRLVKA 162
>pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|B Chain B, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|C Chain C, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|D Chain D, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|E Chain E, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|F Chain F, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|G Chain G, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|H Chain H, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|I Chain I, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|J Chain J, Thioredoxin Peroxidase From Aeropyrum Pernix K1
Length = 249
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
+GK V++ +PAD TP CT + +F YE F++ G ++IG+S D SH K + +++
Sbjct: 32 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 91
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
R+P+ +++D V + G+ + R +I+D GV++ + + +D
Sbjct: 92 IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTXLYYPXELGRLVD 151
Query: 207 ETLKFLQS 214
E L+ +++
Sbjct: 152 EILRIVKA 159
>pdb|3GKN|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of
Xanthomonas Campestris Bacterioferritin Comigratory
Protein From The Trapped Intermediate/ligand Complex
Structures
pdb|3GKN|B Chain B, Insights Into The Alkyl Peroxide Reduction Activity Of
Xanthomonas Campestris Bacterioferritin Comigratory
Protein From The Trapped Intermediate/ligand Complex
Structures
Length = 163
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 84 GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK 143
G +L G +V+YFYP D TPG T + F +F KAGA+++G+S D SH
Sbjct: 25 GTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHD 84
Query: 144 AFAKKYRLPYTLLSDEGNKVRKEWGV--PADFFG-SLPG--RQTYILDKNGVVQLIYNNQ 198
F K + L+SD + + + V + +G + G R T++L G V + +
Sbjct: 85 NFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-RK 143
Query: 199 FQPEKHIDETLKFLQS 214
+ H D L L++
Sbjct: 144 VKVAGHADAVLAALKA 159
>pdb|3GKM|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of
Xanthomonas Campestris Bacterioferritin Comigratory
Protein From The Trapped IntermediateLIGAND COMPLEX
STRUCTURES
Length = 163
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 84 GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK 143
G +L G +V+YFYP D TPG T + F +F KAGA+++G+S D SH
Sbjct: 25 GTQTTLRAHAGHWLVIYFYPKDSTPGSTTEGLDFNALLPEFDKAGAKILGVSRDSVKSHD 84
Query: 144 AFAKKYRLPYTLLSDEGNKVRKEWGV--PADFFG-SLPG--RQTYILDKNGVVQLIYNNQ 198
F+ K + L+SD + + + V + +G + G R T++L G V + +
Sbjct: 85 NFSAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-RK 143
Query: 199 FQPEKHIDETLKFLQS 214
+ H D L L++
Sbjct: 144 VKVAGHADAVLAALKA 159
>pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|B Chain B, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|C Chain C, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|D Chain D, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|E Chain E, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|F Chain F, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|G Chain G, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|H Chain H, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|I Chain I, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|J Chain J, Tryparedoxin Peroxidase From Crithidia Fasciculata
Length = 188
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Query: 85 RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA 144
+ VSLS +KGK VV++FYP D T C + F D ++F + EVI S D SH
Sbjct: 27 KKVSLSSYKGKYVVLFFYPXDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQ 86
Query: 145 FAKKYRLPYTL-------LSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197
+ R L L+D+ + + +GV D + R +I+D NG ++ I N
Sbjct: 87 WTSVDRKKGGLGPXAIPXLADKTKAIARAYGV-LDEDSGVAYRGVFIIDPNGKLRQIIIN 145
Query: 198 QFQPEKHIDETLKFLQS 214
++++E ++ +++
Sbjct: 146 DXPIGRNVEEVIRLVEA 162
>pdb|4EO3|A Chain A, Peroxiredoxin Nitroreductase Fusion Enzyme
pdb|4EO3|B Chain B, Peroxiredoxin Nitroreductase Fusion Enzyme
Length = 322
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 18/137 (13%)
Query: 77 FTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAF-RDSYEKFKKAGAEVIGIS 135
F L EG+ + GK +++F+P T G T++A F R+++EK A+V+GIS
Sbjct: 7 FELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSRENFEK-----AQVVGIS 61
Query: 136 GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPG----RQTYILDKNGVV 191
D + K F +K L TLLSD G+ +FF L R T+++D+ G V
Sbjct: 62 RDSVEALKRFKEKNDLKVTLLSDPE-------GILHEFFNVLENGKTVRSTFLIDRWGFV 114
Query: 192 QLIYNNQFQPEKHIDET 208
+ + + + E H+ E
Sbjct: 115 RKEW-RRVKVEGHVQEV 130
>pdb|3A2W|A Chain A, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|B Chain B, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|C Chain C, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|D Chain D, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|E Chain E, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|F Chain F, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|G Chain G, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|H Chain H, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|I Chain I, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|J Chain J, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2X|A Chain A, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|B Chain B, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|C Chain C, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|D Chain D, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|E Chain E, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|F Chain F, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|G Chain G, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|H Chain H, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|I Chain I, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|J Chain J, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
Length = 249
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
+GK V++ +PAD TP T + +F YE F++ G ++IG+S D SH K + +++
Sbjct: 32 QGKWFVLFSHPADFTPVSTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 91
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
R+P+ +++D V + G+ + R +I+D GV++ + + + +D
Sbjct: 92 IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVD 151
Query: 207 ETLKFLQS 214
E L+ +++
Sbjct: 152 EILRIVKA 159
>pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2NVL|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
Length = 250
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
+GK V++ +PAD TP T + +F YE F++ G ++IG+S D SH K + +++
Sbjct: 33 QGKWFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 92
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
R+P+ +++D V + G+ + R +I+D GV++ + + + +D
Sbjct: 93 IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVD 152
Query: 207 ETLKFLQS 214
E L+ +++
Sbjct: 153 EILRIVKA 160
>pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|B Chain B, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|C Chain C, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|D Chain D, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|E Chain E, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|F Chain F, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|G Chain G, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|H Chain H, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|I Chain I, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|J Chain J, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
Length = 249
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
+GK V++ +PAD TP T + +F YE F++ G ++IG+S D SH K + +++
Sbjct: 32 QGKWFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 91
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
R+P+ +++D V + G+ + R +I+D GV++ + + + +D
Sbjct: 92 IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVD 151
Query: 207 ETLKFLQS 214
E L+ +++
Sbjct: 152 EILRIVKA 159
>pdb|2C0D|A Chain A, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From
Plasmodium Falciparum
pdb|2C0D|B Chain B, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From
Plasmodium Falciparum
Length = 221
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 10/143 (6%)
Query: 80 KDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
K+ E NV LS F G K + FYP + T C + F + F+ E++GIS D
Sbjct: 41 KNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDS 100
Query: 139 SSSHKAFAKK-------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
SH A+ + +TL+SD + K + V D S R +I+DKNG V
Sbjct: 101 VYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYD--NSFALRGLFIIDKNGCV 158
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
+ N +++ E L+ + S
Sbjct: 159 RHQTVNDLPIGRNVQEVLRTIDS 181
>pdb|2CV4|A Chain A, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|B Chain B, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|C Chain C, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|D Chain D, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|E Chain E, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|F Chain F, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|G Chain G, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|H Chain H, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|I Chain I, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|J Chain J, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
Length = 250
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Query: 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
+GK V++ +PAD TP T + +F YE F++ G ++IG+S D SH K + +++
Sbjct: 33 QGKWFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 92
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
R+P+ +++D V + G+ + R +I+D GV++ + + +D
Sbjct: 93 IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTXLYYPXELGRLVD 152
Query: 207 ETLKFLQS 214
E L+ +++
Sbjct: 153 EILRIVKA 160
>pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|E Chain E, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|F Chain F, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|G Chain G, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|H Chain H, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|I Chain I, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|J Chain J, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
Length = 216
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 87 VSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA 146
VSL K+KGK VV+ F P T + AF ++ +KF++ GA+V+ S D S A+
Sbjct: 45 VSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWT 104
Query: 147 KKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQF 199
R + LL+D + + +++GV + G + R +I+D GV++ I N
Sbjct: 105 NIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEG-VALRGLFIIDPKGVIRHITINDL 163
Query: 200 QPEKHIDETLKFLQS 214
+++DE L+ +++
Sbjct: 164 PVGRNVDEALRLVEA 178
>pdb|1WE0|A Chain A, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|B Chain B, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|C Chain C, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|D Chain D, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|E Chain E, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|F Chain F, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|G Chain G, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|H Chain H, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|I Chain I, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|J Chain J, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
Length = 187
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 86 NVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF 145
V+ + KGK +V FYPAD + C + + Y + KK G EV +S D HKA+
Sbjct: 23 EVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAW 82
Query: 146 AKKY----RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197
+ + Y ++ D + +++ V + G L R T+I+D +GV+Q I N
Sbjct: 83 HENSPAVGSIEYIMIGDPSQTISRQFDVLNEETG-LADRGTFIIDPDGVIQAIEIN 137
>pdb|1XXU|A Chain A, Crystal Structure Of Ahpe From Mycrobacterium
Tuberculosis, A 1-Cys Peroxiredoxin
pdb|1XXU|B Chain B, Crystal Structure Of Ahpe From Mycrobacterium
Tuberculosis, A 1-Cys Peroxiredoxin
pdb|1XXU|C Chain C, Crystal Structure Of Ahpe From Mycrobacterium
Tuberculosis, A 1-Cys Peroxiredoxin
pdb|1XXU|D Chain D, Crystal Structure Of Ahpe From Mycrobacterium
Tuberculosis, A 1-Cys Peroxiredoxin
Length = 153
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
Query: 68 VSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKK 126
++ G P FTL+DQ + V+L ++G K V++ F+P T C + RD +F+
Sbjct: 2 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN 61
Query: 127 AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSD--EGNKVRKEWGVPADFFGSLPGRQTYI 184
+ + IS +HK +A + + LLSD V + +GV + G + R T++
Sbjct: 62 DDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAG-IANRGTFV 120
Query: 185 LDKNGVVQLIYNNQFQPEKHIDETL 209
+D++G+++ + QP + D+ L
Sbjct: 121 VDRSGIIR--FAEMKQPGEVRDQRL 143
>pdb|3IXR|A Chain A, Crystal Structure Of Xylella Fastidiosa Prxq C47s Mutant
Length = 179
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK 147
+LS + + +V+YFYP D TPG + + F +F++ A V+G+S D SH +F
Sbjct: 45 TLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCA 104
Query: 148 KYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDK 187
K + L+SD + K + V + ++ GRQ +++
Sbjct: 105 KQGFTFPLVSDSDAILCKAFDVIKE--KTMYGRQVIGIER 142
>pdb|2BMX|A Chain A, Mycobacterium Tuberculosis Ahpc
pdb|2BMX|B Chain B, Mycobacterium Tuberculosis Ahpc
pdb|2BMX|C Chain C, Mycobacterium Tuberculosis Ahpc
Length = 195
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR--- 150
GK VV+F+P D T C + AF ++F+ A+++G+S D +H + ++
Sbjct: 45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLK 104
Query: 151 -LPYTLLSDEGNKVRKEWGV-PADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDET 208
LP+ LSD ++ + GV AD + R T+I+D N +Q + +++DE
Sbjct: 105 TLPFPXLSDIKRELSQAAGVLNAD---GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEV 161
Query: 209 LKFLQS 214
L+ L +
Sbjct: 162 LRVLDA 167
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
S+G P+F L+D G+ + LS KGK V + F+ P C K+ + Y+ FK G
Sbjct: 1 SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFW-GTWCPHCKKEFPYMANQYKHFKSQG 59
Query: 129 AEVIGIS-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPGRQTYI 184
E++ ++ G+ + F K Y + + ++ D +V + V P F + G+ +
Sbjct: 60 VEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV 119
Query: 185 LDKNGVVQLI--YNNQFQP 201
+ +I Y N +P
Sbjct: 120 VTGTMTESMIHDYMNLIKP 138
>pdb|1XVW|A Chain A, Crystal Structure Of Ahpe From Mycobacterium Tuberculosis,
A 1-Cys Peroxiredoxin
pdb|1XVW|B Chain B, Crystal Structure Of Ahpe From Mycobacterium Tuberculosis,
A 1-Cys Peroxiredoxin
Length = 160
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 6/148 (4%)
Query: 65 SAKVSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEK 123
S ++ G P FTL+DQ + V+L ++G K V++ F+P T + RD +
Sbjct: 6 SHMLNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGIXQGELDQLRDHLPE 65
Query: 124 FKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSD--EGNKVRKEWGVPADFFGSLPGRQ 181
F+ + + IS +HK +A + + LLSD V + +GV + G + R
Sbjct: 66 FENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAG-IANRG 124
Query: 182 TYILDKNGVVQLIYNNQFQPEKHIDETL 209
T+++D++G+++ + QP + D+ L
Sbjct: 125 TFVVDRSGIIR--FAEMKQPGEVRDQRL 150
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
S+G P+F L+D G+ + LS KGK V + F+ P C KQ + Y+ FK G
Sbjct: 1 SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-CKKQFPYMANQYKHFKSQG 59
Query: 129 AEVIGIS-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPGRQTYI 184
E++ ++ G+ + F K Y + + ++ D +V + V P F + G+ +
Sbjct: 60 VEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV 119
Query: 185 LDKNGVVQLI--YNNQFQP 201
+ +I Y N +P
Sbjct: 120 VTGTMTESMIHDYMNLIKP 138
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
S+G P+F L+D G+ + LS KGK V + F+ P C K+ + Y+ FK G
Sbjct: 1 SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEP-CKKEFPYMANQYKHFKSQG 59
Query: 129 AEVIGIS-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPGRQTYI 184
E++ ++ G+ + F K Y + + ++ D +V + V P F + G+ +
Sbjct: 60 VEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV 119
Query: 185 LDKNGVVQLI--YNNQFQP 201
+ +I Y N +P
Sbjct: 120 VTGTMTESMIHDYMNLIKP 138
>pdb|3EMP|A Chain A, Crystal Structure Of The S-Acetanilide Modified Form Of
C165s Ahpc
pdb|3EMP|B Chain B, Crystal Structure Of The S-Acetanilide Modified Form Of
C165s Ahpc
pdb|3EMP|C Chain C, Crystal Structure Of The S-Acetanilide Modified Form Of
C165s Ahpc
pdb|3EMP|D Chain D, Crystal Structure Of The S-Acetanilide Modified Form Of
C165s Ahpc
pdb|3EMP|E Chain E, Crystal Structure Of The S-Acetanilide Modified Form Of
C165s Ahpc
Length = 186
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 79 LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
K+ E V+ +G+ V +FYPAD T C + D YE+ +K G +V +S D
Sbjct: 15 FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 74
Query: 139 SSSHKAFAKK----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194
+HKA+ ++ Y ++ D + + + + G L R T+++D G++Q I
Sbjct: 75 HFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAI 133
>pdb|1YEP|A Chain A, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Olgomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEP|B Chain B, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Olgomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEP|C Chain C, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Olgomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEP|D Chain D, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Olgomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEP|E Chain E, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Olgomerization In Ahpc, A
Bacterial Peroxiredoxin
Length = 186
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 79 LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
K+ E V+ +G+ V +FYPAD T C + D YE+ +K G +V +S D
Sbjct: 15 FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 74
Query: 139 SSSHKAFAKK----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194
+HKA+ ++ Y ++ D + + + + G L R T+++D G++Q I
Sbjct: 75 HFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAI 133
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
S+G P+F L+D G+ + LS KGK V + F+ P C K+ + Y+ FK G
Sbjct: 1 SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-CKKEFPYMANQYKHFKSQG 59
Query: 129 AEVIGIS-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPGRQTYI 184
E++ ++ G+ + F K Y + + ++ D +V + V P F + G+ +
Sbjct: 60 VEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV 119
Query: 185 LDKNGVVQLI--YNNQFQP 201
+ +I Y N +P
Sbjct: 120 VTGTMTESMIHDYMNLIKP 138
>pdb|1YEX|A Chain A, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEX|B Chain B, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEX|C Chain C, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEX|D Chain D, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEX|E Chain E, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin
Length = 186
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 79 LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
K+ E V+ +G+ V +FYPAD T C + D YE+ +K G +V +S D
Sbjct: 15 FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 74
Query: 139 SSSHKAFAKK----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194
HKA+ ++ Y ++ D + + + + G L R T+++D G++Q I
Sbjct: 75 HFDHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAI 133
>pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|B Chain B, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|C Chain C, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|D Chain D, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|E Chain E, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|F Chain F, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|G Chain G, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|H Chain H, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|I Chain I, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|J Chain J, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin
Length = 186
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 79 LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
K+ E V+ +G+ V +FYPAD T C + D YE+ +K G +V +S D
Sbjct: 15 FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 74
Query: 139 SSSHKAFAKK----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194
HKA+ ++ Y ++ D + + + + G L R T+++D G++Q I
Sbjct: 75 HFVHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAI 133
>pdb|1YF0|A Chain A, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF0|B Chain B, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF0|C Chain C, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF0|D Chain D, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF0|E Chain E, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin
Length = 186
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 79 LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
K+ E V+ +G+ V +FYPAD T C + D YE+ +K G +V +S D
Sbjct: 15 FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 74
Query: 139 SSSHKAFAKK----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194
HKA+ ++ Y ++ D + + + + G L R T+++D G++Q I
Sbjct: 75 HFIHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAI 133
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
S+G P+F L+D G+ + LS KGK V + F+ P C K+ + Y+ FK G
Sbjct: 1 SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-CKKEFPYXANQYKHFKSQG 59
Query: 129 AEVIGIS-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 169
E++ ++ G+ + F K Y + + ++ D +V + V
Sbjct: 60 VEIVAVNVGESKIAVHNFXKSYGVNFPVVLDTDRQVLDAYDV 101
>pdb|2H1G|A Chain A, Resa C74aC77A
pdb|2H1G|B Chain B, Resa C74aC77A
Length = 143
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
S+G P+F L+D G+ + LS KGK V + F+ P K+ + Y+ FK G
Sbjct: 1 SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEP-AKKEFPYMANQYKHFKSQG 59
Query: 129 AEVIGIS-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPGRQTYI 184
E++ ++ G+ + F K Y + + ++ D +V + V P F + G+ +
Sbjct: 60 VEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV 119
Query: 185 LDKNGVVQLI--YNNQFQP 201
+ +I Y N +P
Sbjct: 120 VTGTMTESMIHDYMNLIKP 138
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
V G P+F L G N SL++++GK V+V F+ A P C + + + F K
Sbjct: 15 VRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFW-ASWCPYCRDEXPSXDRLVKSFPKG 73
Query: 128 GAEVIGISGDDSSSHKAFAKKYR---LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYI 184
V+ + + K F +KYR + + LSD +V++ +G LP T+I
Sbjct: 74 DLVVLAV-----NVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGA-----NRLP--DTFI 121
Query: 185 LDKNGVVQ 192
+D+ G+++
Sbjct: 122 VDRKGIIR 129
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
S+G P+F L+D G+ + LS KGK V + F+ P K+ + Y+ FK G
Sbjct: 1 SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-AKKEFPYMANQYKHFKSQG 59
Query: 129 AEVIGIS-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPGRQTYI 184
E++ ++ G+ + F K Y + + ++ D +V + V P F + G+ +
Sbjct: 60 VEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV 119
Query: 185 LDKNGVVQLI--YNNQFQP 201
+ +I Y N +P
Sbjct: 120 VTGTMTESMIHDYMNLIKP 138
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 75 PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGI 134
P+F L+D G+ + LS KGK V + F+ C K+ + Y+ FK G E++ +
Sbjct: 4 PNFVLEDTNGKRIELSDLKGKGVFLNFW-GTWCEHCKKEFPYMANQYKHFKSQGVEIVAV 62
Query: 135 S-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPGRQTYILDKNGV 190
+ G+ + F K Y + + ++ D +V + V P F + G+ ++
Sbjct: 63 NVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMT 122
Query: 191 VQLI--YNNQFQP 201
+I Y N +P
Sbjct: 123 ESMIHDYMNLIKP 135
>pdb|1N8J|A Chain A, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|B Chain B, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|C Chain C, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|D Chain D, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|E Chain E, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|F Chain F, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|G Chain G, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|H Chain H, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|I Chain I, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|J Chain J, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|K Chain K, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|L Chain L, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|M Chain M, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|N Chain N, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|O Chain O, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|P Chain P, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|Q Chain Q, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|R Chain R, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|S Chain S, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|T Chain T, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
Length = 186
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 79 LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
K+ E V+ +G+ V +FYPAD T + D YE+ +K G +V +S D
Sbjct: 15 FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDT 74
Query: 139 SSSHKAFAKK----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194
+HKA+ ++ Y ++ D + + + + G L R T+++D G++Q I
Sbjct: 75 HFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAI 133
>pdb|1ZOF|A Chain A, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc)
From Helicobacter Pylori
pdb|1ZOF|B Chain B, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc)
From Helicobacter Pylori
pdb|1ZOF|C Chain C, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc)
From Helicobacter Pylori
pdb|1ZOF|D Chain D, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc)
From Helicobacter Pylori
pdb|1ZOF|E Chain E, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc)
From Helicobacter Pylori
pdb|1ZOF|F Chain F, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc)
From Helicobacter Pylori
pdb|1ZOF|G Chain G, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc)
From Helicobacter Pylori
pdb|1ZOF|H Chain H, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc)
From Helicobacter Pylori
pdb|1ZOF|I Chain I, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc)
From Helicobacter Pylori
pdb|1ZOF|J Chain J, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc)
From Helicobacter Pylori
Length = 198
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 69/148 (46%), Gaps = 10/148 (6%)
Query: 75 PSFTLKDQEGRNVSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG 133
P+ ++ + LSK GK V+++F+P D T C + AF + F + G VIG
Sbjct: 13 PAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIG 72
Query: 134 ISGDDSSSHKAFAKK-------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILD 186
+S D H A+ ++ + +++D + +++ V F ++ R +++D
Sbjct: 73 VSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVL--FEEAIALRGAFLID 130
Query: 187 KNGVVQLIYNNQFQPEKHIDETLKFLQS 214
KN V+ N ++ DE L+ + +
Sbjct: 131 KNMKVRHAVINDLPLGRNADEMLRMVDA 158
>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From
Neisseria Meningitidis
Length = 153
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 75 PSFTLKDQEGRNVSLSKFKGKPVVV-YFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG 133
P+F+L D G+ VS + +GK ++ +++P+ PGC + + +K +V+
Sbjct: 9 PAFSLPDLHGKTVSNADLQGKVTLINFWFPS--CPGCVSEMPKIIKTANDYKNKNFQVLA 66
Query: 134 ISG--DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYIL 185
++ D S + + K Y LP+T++ D V + +G L G++ IL
Sbjct: 67 VAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEIL 120
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
++ G P+ T D +G +VSL+ FKGK V+V F+ A C K+ +Y FK
Sbjct: 3 LATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAG-CSWCRKETPYLLKTYNAFKDK 61
Query: 128 GAEVIGISGD 137
G + G+S D
Sbjct: 62 GFTIYGVSTD 71
>pdb|2VL9|A Chain A, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|B Chain B, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|C Chain C, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|D Chain D, Oxidized Form Of Human Peroxiredoxin 5
Length = 173
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 65 SAKVSKGQAPPSFTLKDQE-GRNVSLSK-FKGKPVVVYFYPADETPGCTKQAC-AFRDSY 121
SA + G A P+ + + E G V+L++ FKGK V++ P TPGC+K F +
Sbjct: 12 SAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQA 71
Query: 122 EKFKKAGAEVIG--------ISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD- 172
E K G +V+ ++G+ +HKA K LL+D KE + D
Sbjct: 72 EALKAKGVQVVASLSVNDAFVTGEWGRAHKAEGK-----VRLLADPTGAFGKETDLLLDD 126
Query: 173 ----FFGSLPGRQTYILDKNGVVQLI 194
FG+ ++ ++ ++G+V+ +
Sbjct: 127 SLVSIFGNRRLKRFSMVVQDGIVKAL 152
>pdb|2VL2|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL2|B Chain B, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
Length = 172
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 65 SAKVSKGQAPPSFTLKDQE-GRNVSLSK-FKGKPVVVYFYPADETPGCTKQAC-AFRDSY 121
SA + G A P+ + + E G V+L++ FKGK V++ P TPGC+K F +
Sbjct: 11 SAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQA 70
Query: 122 EKFKKAGAEVIG--------ISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD- 172
E K G +V+ ++G+ +HKA K LL+D KE + D
Sbjct: 71 EALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGK-----VRLLADPTGAFGKETDLLLDD 125
Query: 173 ----FFGSLPGRQTYILDKNGVVQLI 194
FG+ ++ ++ ++G+V+ +
Sbjct: 126 SLVSIFGNRRLKRFSMVVQDGIVKAL 151
>pdb|3MNG|A Chain A, Wild Type Human Prxv With Dtt Bound As A Competitive
Inhibitor
Length = 173
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 65 SAKVSKGQAPPSFTLKDQE-GRNVSLSK-FKGKPVVVYFYPADETPGCTKQAC-AFRDSY 121
SA + G A P+ + + E G V+L++ FKGK V++ P TPGC+K F +
Sbjct: 12 SAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQA 71
Query: 122 EKFKKAGAEVIG--------ISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD- 172
E K G +V+ ++G+ +HKA K LL+D KE + D
Sbjct: 72 EALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGK-----VRLLADPTGAFGKETDLLLDD 126
Query: 173 ----FFGSLPGRQTYILDKNGVVQLI 194
FG+ ++ ++ ++G+V+ +
Sbjct: 127 SLVSIFGNRRLKRFSMVVQDGIVKAL 152
>pdb|1OC3|A Chain A, Human Peroxiredoxin 5
pdb|1OC3|B Chain B, Human Peroxiredoxin 5
pdb|1OC3|C Chain C, Human Peroxiredoxin 5
pdb|2VL2|C Chain C, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|B Chain B, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|C Chain C, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
Length = 172
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 65 SAKVSKGQAPPSFTLKDQE-GRNVSLSK-FKGKPVVVYFYPADETPGCTKQAC-AFRDSY 121
SA + G A P+ + + E G V+L++ FKGK V++ P TPGC+K F +
Sbjct: 11 SAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQA 70
Query: 122 EKFKKAGAEVIG--------ISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD- 172
E K G +V+ ++G+ +HKA K LL+D KE + D
Sbjct: 71 EALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGK-----VRLLADPTGAFGKETDLLLDD 125
Query: 173 ----FFGSLPGRQTYILDKNGVVQLI 194
FG+ ++ ++ ++G+V+ +
Sbjct: 126 SLVSIFGNRRLKRFSMVVQDGIVKAL 151
>pdb|1HD2|A Chain A, Human Peroxiredoxin 5
pdb|1H4O|A Chain A, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|B Chain B, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|C Chain C, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|D Chain D, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|E Chain E, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|F Chain F, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|G Chain G, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|H Chain H, Monoclinic Form Of Human Peroxiredoxin 5
Length = 161
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 21/145 (14%)
Query: 66 AKVSKGQAPPSFTLKDQE-GRNVSLSK-FKGKPVVVYFYPADETPGCTKQAC-AFRDSYE 122
A + G A P+ + + E G V+L++ FKGK V++ P TPGC+K F + E
Sbjct: 1 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAE 60
Query: 123 KFKKAGAEVIG--------ISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD-- 172
K G +V+ ++G+ +HKA K LL+D KE + D
Sbjct: 61 ALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGK-----VRLLADPTGAFGKETDLLLDDS 115
Query: 173 ---FFGSLPGRQTYILDKNGVVQLI 194
FG+ ++ ++ ++G+V+ +
Sbjct: 116 LVSIFGNRRLKRFSMVVQDGIVKAL 140
>pdb|1XVQ|A Chain A, Crystal Structure Of Thiol Peroxidase From Mycobacterium
Tuberculosis
Length = 175
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 71 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
G P+FTL + +S +F+GK V++ +P+ +TP C A + R E+ +GA
Sbjct: 21 GSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVC---ATSVRTFDERAAASGAT 77
Query: 131 VIGISGDDSSSHKAF 145
V+ +S D + K F
Sbjct: 78 VLXVSKDLPFAQKRF 92
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 26/162 (16%)
Query: 63 SISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAF--RDS 120
S+ V G+ P FT+ +G+ V+LS +GK V++ F + G ++ F +D
Sbjct: 2 SLGYIVRIGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTAS--WCGVCRKEMPFIEKDI 59
Query: 121 YEKFK-KAGAEVIGISGDDSSSHK-AFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLP 178
+ K K A +IGI D+ AFAK + Y L D G AD F
Sbjct: 60 WLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPG----------ADIFAKYA 109
Query: 179 GR-----QTYILDKNG-VVQL--IYNNQ--FQPEKHIDETLK 210
R + ++D+ G +V+L +YN + + I+E LK
Sbjct: 110 LRDAGITRNVLIDREGKIVKLTRLYNEEEFASLVQQINEMLK 151
>pdb|1URM|A Chain A, Human Peroxiredoxin 5, C47s Mutant
Length = 172
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 65 SAKVSKGQAPPSFTLKDQE-GRNVSLSK-FKGKPVVVYFYPADETPGCTKQAC-AFRDSY 121
SA + G A P+ + + E G V+L++ FKGK V++ P TPG +K F +
Sbjct: 11 SAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGSSKTHLPGFVEQA 70
Query: 122 EKFKKAGAEVIG--------ISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD- 172
E K G +V+ ++G+ +HKA K LL+D KE + D
Sbjct: 71 EALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGK-----VRLLADPTGAFGKETDLLLDD 125
Query: 173 ----FFGSLPGRQTYILDKNGVVQLI 194
FG+ ++ ++ ++G+V+ +
Sbjct: 126 SLVSIFGNRRLKRFSMVVQDGIVKAL 151
>pdb|2V2G|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form
pdb|2V2G|B Chain B, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form
pdb|2V2G|C Chain C, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form
pdb|2V2G|D Chain D, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form
pdb|2V32|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V32|B Chain B, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V32|C Chain C, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V32|D Chain D, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V41|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|B Chain B, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|C Chain C, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|D Chain D, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|E Chain E, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|F Chain F, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|G Chain G, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|H Chain H, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin
6 Of Arenicola Marina. Orthorhombic Form
Length = 233
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR------- 150
V++ +P D TP T + FKK G ++I +S D+ + HK +++ +
Sbjct: 33 VLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKG 92
Query: 151 -LPYTLLSDEGNKVRKEWGV 169
+PY +++DE ++ + G+
Sbjct: 93 DMPYPIIADETRELAVKLGM 112
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 75 PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGA----E 130
P FTL G V LS KG+ V+V F+ A P C ++ S + A A
Sbjct: 9 PDFTLNTLNGEVVKLSDLKGQVVIVNFW-ATWCPPCREEI----PSXXRLNAAXAGKPFR 63
Query: 131 VIGISGDDSS--SHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKN 188
+ +S D+ + + F +K +L D +V K +G+ +T+++D++
Sbjct: 64 XLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGK-------LYGTTGVPETFVIDRH 116
Query: 189 GVV 191
GV+
Sbjct: 117 GVI 119
>pdb|1Y25|A Chain A, Structure Of Mycobacterial Thiol Peroxidase Tpx
pdb|1Y25|B Chain B, Structure Of Mycobacterial Thiol Peroxidase Tpx
Length = 165
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 71 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
G P+FTL + +S +F+GK V++ +P+ +TP A + R E+ +GA
Sbjct: 21 GSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTP---VSATSVRTFDERAAASGAT 77
Query: 131 VIGISGDDSSSHKAF 145
V+ +S D + K F
Sbjct: 78 VLCVSKDLPFAQKRF 92
>pdb|2XPD|A Chain A, Reduced Thiol Peroxidase (Tpx) From Yersinia
Pseudotuberculosis
pdb|2XPD|B Chain B, Reduced Thiol Peroxidase (Tpx) From Yersinia
Pseudotuberculosis
pdb|2XPD|C Chain C, Reduced Thiol Peroxidase (Tpx) From Yersinia
Pseudotuberculosis
pdb|2XPD|D Chain D, Reduced Thiol Peroxidase (Tpx) From Yersinia
Pseudotuberculosis
pdb|2XPD|E Chain E, Reduced Thiol Peroxidase (Tpx) From Yersinia
Pseudotuberculosis
pdb|2XPD|F Chain F, Reduced Thiol Peroxidase (Tpx) From Yersinia
Pseudotuberculosis
pdb|2XPE|A Chain A, Oxidised Thiol Peroxidase (Tpx) From Yersinia
Pseudotuberculosis
pdb|2XPE|B Chain B, Oxidised Thiol Peroxidase (Tpx) From Yersinia
Pseudotuberculosis
pdb|3ZRD|A Chain A, Oxidised Thiol Peroxidase (Tpx) From Yersinia
Pseudotuberculosis
pdb|3ZRD|B Chain B, Oxidised Thiol Peroxidase (Tpx) From Yersinia
Pseudotuberculosis
pdb|3ZRE|A Chain A, Reduced Thiol Peroxidase (Tpx) From Yersinia
Pseudotuberculosis
Length = 200
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 22/165 (13%)
Query: 62 TSISAKVSK-GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 120
S++ K+ + G FTL ++ +V+LS F GK V+ +P+ +T C S
Sbjct: 45 VSVAGKLPQIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAA-------S 97
Query: 121 YEKFKKAGAE-----VIGISGDDSSSHKAFAKKYRLP--YTLLSDEGNKVRKEWGVPADF 173
KF + E V+ IS D + F L TL + G ++ +GV
Sbjct: 98 VRKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAITE 157
Query: 174 --FGSLPGRQTYILDKNGVVQLIYN---NQFQPEKHIDETLKFLQ 213
L R +LD G +IY+ N+ E + D L L+
Sbjct: 158 GPLAGLTARAVVVLD--GQDNVIYSELVNEITTEPNYDAALAALK 200
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like
Protein Bvu_1432 From Bacteroides Vulgatus
Length = 152
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 79 LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
LKD +G SL+ KGK V++ F + A R+ Y K+ G E+ IS D
Sbjct: 20 LKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHN-LALRELYNKYASQGFEIYQISL-D 77
Query: 139 SSSHKAFAKKYRLPYTLLSD 158
H LP+ + D
Sbjct: 78 GDEHFWKTSADNLPWVCVRD 97
>pdb|3KH7|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Reduced Ccmg From Pseudomonas Aeruginosa
pdb|3KH9|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Oxidized Ccmg From Pseudomonas Aeruginosa
Length = 176
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 75 PSFTLKDQE--GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVI 132
P+F L + R ++ + KGKP +V + P C + + + G +
Sbjct: 37 PAFDLPSVQDPARRLTEADLKGKPALVNVW-GTWCPSCRVE----HPELTRLAEQGVVIY 91
Query: 133 GIS-GDDSSSHKAFAKKYRLPYTL-LSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGV 190
GI+ DD+++ + + PY L +SD + + GV +G+ +TY++DK G+
Sbjct: 92 GINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGV----YGA---PETYLIDKQGI 144
Query: 191 V---------QLIYNNQFQP--EKHIDE 207
+ Q ++ Q P ++ +DE
Sbjct: 145 IRHKIVGVVDQKVWREQLAPLYQQLLDE 172
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 77 FTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEV--IGI 134
FT G + +GKP V++F+ P C +A S + A V +GI
Sbjct: 7 FTATTLSGAPFDGASLQGKPAVLWFW-TPWCPFCNAEA----PSLSQVAAANPAVTFVGI 61
Query: 135 SG-DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170
+ D + ++F KY L +T L+D + + VP
Sbjct: 62 ATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVP 98
>pdb|1XCC|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|1XCC|B Chain B, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|1XCC|C Chain C, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|1XCC|D Chain D, 1-Cys Peroxidoxin From Plasmodium Yoelli
Length = 220
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR 150
+++ +P D TP CT + +E F K ++IG S + SH + + +
Sbjct: 35 ILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIK 87
>pdb|1ON4|A Chain A, Solution Structure Of Soluble Domain Of Sco1 From Bacillus
Subtilis
Length = 174
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 77 FTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS- 135
FT ++Q+G+NVSL KG+ + F + C D +K K +V IS
Sbjct: 16 FTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISF 75
Query: 136 -----GDDSSSHKAFAKKYRLPY 153
D K FA Y L +
Sbjct: 76 SVDPENDKPKQLKKFAANYPLSF 98
>pdb|1XZO|A Chain A, Identification Of A Disulfide Switch In Bssco, A Member Of
The Sco Family Of Cytochrome C Oxidase Assembly Proteins
pdb|1XZO|B Chain B, Identification Of A Disulfide Switch In Bssco, A Member Of
The Sco Family Of Cytochrome C Oxidase Assembly Proteins
Length = 174
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 77 FTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS- 135
FT ++Q+G+NVSL KG+ + F + C D +K K +V IS
Sbjct: 16 FTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISF 75
Query: 136 -----GDDSSSHKAFAKKYRLPY 153
D K FA Y L +
Sbjct: 76 SVDPENDKPKQLKKFAANYPLSF 98
>pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|C Chain C, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|D Chain D, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5R|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
pdb|2P5R|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
Length = 170
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 76 SFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG 133
FT+KD + +V LS FKGK V++ A + YEK+K G E++
Sbjct: 14 DFTVKDAKENDVDLSIFKGK-VLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILA 70
>pdb|2JSY|A Chain A, Solution Structure Of Tpx In The Oxidized State
pdb|2JSZ|A Chain A, Solution Structure Of Tpx In The Reduced State
Length = 167
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 62 TSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY 121
T + +V G P FT+ SL+ KGK ++ P+ +T C Q F +
Sbjct: 12 TLVGQEVKVGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNE-- 69
Query: 122 EKFKKAGAEVIGISGD 137
E K V IS D
Sbjct: 70 EAAKLGDVNVYTISAD 85
>pdb|3FKF|A Chain A, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|B Chain B, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|C Chain C, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|D Chain D, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
Length = 148
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 65 SAKVSKGQAPPSFTLKDQEGRNVSLS--KFKGKPVVVYFYPA--DETPGCTKQACAFRDS 120
+AKV+ G++ P F+L +++G +S S +F+ + +++ F+ + D P +
Sbjct: 2 NAKVTVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKE 61
Query: 121 YEKFKKAGAEVIGISGD-DSSSHKAFAKKYRLPYTLLSD 158
Y+K K +GIS D D + + KK L + + D
Sbjct: 62 YKKNKNFAX--LGISLDIDREAWETAIKKDTLSWDQVCD 98
>pdb|3HVX|A Chain A, Escherichia Coli Thiol Peroxidase (Tpx) Resolving Cysteine
To Serine Mutant (C95s) With An Intermolecular Disulfide
Bond
pdb|3HVX|B Chain B, Escherichia Coli Thiol Peroxidase (Tpx) Resolving Cysteine
To Serine Mutant (C95s) With An Intermolecular Disulfide
Bond
pdb|3HVX|C Chain C, Escherichia Coli Thiol Peroxidase (Tpx) Resolving Cysteine
To Serine Mutant (C95s) With An Intermolecular Disulfide
Bond
pdb|3HVX|D Chain D, Escherichia Coli Thiol Peroxidase (Tpx) Resolving Cysteine
To Serine Mutant (C95s) With An Intermolecular Disulfide
Bond
Length = 167
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Query: 71 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
G +FTL ++ +V+L +F GK V+ +P+ +T C S KF + E
Sbjct: 21 GSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAA-------SVRKFNQLATE 73
Query: 131 -----VIGISGDDSSSHKAF--AKKYRLPYTLLSDEGNKVRKEWGVP-ADF-FGSLPGRQ 181
V+ IS D + F A+ TL + + + +GV AD L R
Sbjct: 74 IDNTVVLSISADLPFAQSRFSGAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARA 133
Query: 182 TYILDKN 188
++D+N
Sbjct: 134 VVVIDEN 140
>pdb|1QXH|A Chain A, Crystal Structure Of Escherichia Coli Thiol Peroxidase In
The Oxidized State
pdb|1QXH|B Chain B, Crystal Structure Of Escherichia Coli Thiol Peroxidase In
The Oxidized State
pdb|3HVS|A Chain A, Escherichia Coli Thiol Peroxidase (Tpx) Wild Type
Disulfide Form
pdb|3HVS|B Chain B, Escherichia Coli Thiol Peroxidase (Tpx) Wild Type
Disulfide Form
pdb|3I43|A Chain A, Escherichia Coli Thiol Peroxidase (Tpx) Wild Type
Disulfide Form
pdb|3I43|B Chain B, Escherichia Coli Thiol Peroxidase (Tpx) Wild Type
Disulfide Form
Length = 167
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Query: 71 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
G +FTL ++ +V+L +F GK V+ +P+ +T C S KF + E
Sbjct: 21 GSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAA-------SVRKFNQLATE 73
Query: 131 -----VIGISGDDSSSHKAF--AKKYRLPYTLLSDEGNKVRKEWGVP-ADF-FGSLPGRQ 181
V+ IS D + F A+ TL + + + +GV AD L R
Sbjct: 74 IDNTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARA 133
Query: 182 TYILDKN 188
++D+N
Sbjct: 134 VVVIDEN 140
>pdb|2YJH|A Chain A, Thiol Peroxidase From Yersinia Psuedotuberculosis,
Inactive Mutant C61s
Length = 200
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 22/165 (13%)
Query: 62 TSISAKVSK-GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 120
S++ K+ + G FTL ++ +V+LS F GK V+ +P+ +T G + S
Sbjct: 45 VSVAGKLPQIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDT-GVSAA------S 97
Query: 121 YEKFKKAGAE-----VIGISGDDSSSHKAFAKKYRLP--YTLLSDEGNKVRKEWGVPADF 173
KF + E V+ IS D + F L TL + G ++ +GV
Sbjct: 98 VRKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAITE 157
Query: 174 --FGSLPGRQTYILDKNGVVQLIYN---NQFQPEKHIDETLKFLQ 213
L R +LD G +IY+ N+ E + D L L+
Sbjct: 158 GPLAGLTARAVVVLD--GQDNVIYSELVNEITTEPNYDAALAALK 200
>pdb|3CYN|A Chain A, The Structure Of Human Gpx8
pdb|3CYN|B Chain B, The Structure Of Human Gpx8
pdb|3CYN|C Chain C, The Structure Of Human Gpx8
Length = 189
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 76 SFTLKDQEGRNVSLSKFKGKPVVVYFYPAD 105
+F +KD +GR VSL K+KGK +V +D
Sbjct: 29 AFEVKDAKGRTVSLEKYKGKVSLVVNVASD 58
>pdb|3KEB|A Chain A, Thiol Peroxidase From Chromobacterium Violaceum
pdb|3KEB|B Chain B, Thiol Peroxidase From Chromobacterium Violaceum
pdb|3KEB|C Chain C, Thiol Peroxidase From Chromobacterium Violaceum
pdb|3KEB|D Chain D, Thiol Peroxidase From Chromobacterium Violaceum
Length = 224
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 12/107 (11%)
Query: 70 KGQAPPSFTLKDQEGRNVSLSKFKGKP-VVVYFYPADETPGC----TKQACAFRDSYEKF 124
KG PSF L D + + +L F P ++V DE ++ F DS+
Sbjct: 24 KGDYLPSFXLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSWPHL 83
Query: 125 KKAGAEVIGISGDDSSSHKAFAKKYRLP-YTLLSD-EGNKVRKEWGV 169
K +I I+ D SS ++ LP LLS G K +GV
Sbjct: 84 K-----LIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHKRYGV 125
>pdb|3KIJ|A Chain A, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|B Chain B, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|C Chain C, Crystal Structure Of The Human Pdi-Peroxidase
Length = 180
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 76 SFTLKDQEGRNVSLSKFKGKPVVVYFYPAD 105
+F +KD +GR VSL K+KGK +V +D
Sbjct: 20 AFEVKDAKGRTVSLEKYKGKVSLVVNVASD 49
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNK------VRKEWGVPADFFG 175
E+ +K G E++G+ G+ S+ + A + +L D+ + E+G +D +
Sbjct: 215 ERTRKGGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQRRVLPAIAYLEGEYGY-SDLYL 273
Query: 176 SLPGRQTYILDKNGVVQLIYNNQFQPEKH 204
+P IL NG+ ++I EK
Sbjct: 274 GVP----VILGGNGIEKIIELELLADEKE 298
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 76 SFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS 135
SF+ D G+ VSL+ KGK + + + P C + A ++ EK+ + +S
Sbjct: 12 SFSYPDINGKTVSLADLKGKYIYIDVWATWCGP-CRGELPALKELEEKYAGKDIHFVSLS 70
Query: 136 GD 137
D
Sbjct: 71 CD 72
>pdb|3TB2|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|3TB2|B Chain B, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|3TB2|C Chain C, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|3TB2|D Chain D, 1-Cys Peroxidoxin From Plasmodium Yoelli
Length = 220
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR 150
+++ +P D TP T + +E F K ++IG S + SH + + +
Sbjct: 35 ILFSHPNDFTPVXTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIK 87
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 18/94 (19%)
Query: 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRL--------PYTLLSDEGNKVRKE--WGVP- 170
+ F G E G+ D S K FA + TL +E NK+ WG+
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324
Query: 171 -------ADFFGSLPGRQTYILDKNGVVQLIYNN 197
+F GS+ R LDK V+ L YN+
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358
>pdb|3TS3|A Chain A, Crystal Structure Of The Projection Domain Of The Turkey
Astrovirus Capsid Protein At 1.5 Angstrom Resolution
pdb|3TS3|B Chain B, Crystal Structure Of The Projection Domain Of The Turkey
Astrovirus Capsid Protein At 1.5 Angstrom Resolution
pdb|3TS3|C Chain C, Crystal Structure Of The Projection Domain Of The Turkey
Astrovirus Capsid Protein At 1.5 Angstrom Resolution
pdb|3TS3|D Chain D, Crystal Structure Of The Projection Domain Of The Turkey
Astrovirus Capsid Protein At 1.5 Angstrom Resolution
Length = 208
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/59 (20%), Positives = 24/59 (40%)
Query: 55 PSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQ 113
P +T+ + +++ + P ++ D GR +L + F+ E PG Q
Sbjct: 122 PGTTNLDEQLKQRLNLAEGDPVISMGDTNGRRAALFYRTSDEKYILFFSTTEDPGAQYQ 180
>pdb|2BE9|A Chain A, Crystal Structure Of The Ctp-Liganded (T-State) Aspartate
Transcarbamoylase From The Extremely Thermophilic
Archaeon Sulfolobus Acidocaldarius
Length = 300
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 21/90 (23%)
Query: 60 FKTSISA-KVSKGQAPPSFTLKDQEGRNVSLSK--FKGKPV-VVYFYPADETPGCTKQAC 115
K ISA S+ + F L D+ +N++ ++ GK + + +F P+ T
Sbjct: 2 LKHIISAYNFSRDELEDIFALTDKYSKNLNDTRKILSGKTISIAFFEPSTRT-------- 53
Query: 116 AFRDSYEKFKKA----GAEVIGISGDDSSS 141
Y F+KA G +VIG SG++S+S
Sbjct: 54 -----YLSFQKAIINLGGDVIGFSGEESTS 78
>pdb|1PG5|A Chain A, Crystal Structure Of The Unligated (t-state) Aspartate
Transcarbamoylase From The Extremely Thermophilic
Archaeon Sulfolobus Acidocaldarius
Length = 299
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 21/90 (23%)
Query: 60 FKTSISA-KVSKGQAPPSFTLKDQEGRNVSLSK--FKGKPV-VVYFYPADETPGCTKQAC 115
K ISA S+ + F L D+ +N++ ++ GK + + +F P+ T
Sbjct: 1 LKHIISAYNFSRDELEDIFALTDKYSKNLNDTRKILSGKTISIAFFEPSTRT-------- 52
Query: 116 AFRDSYEKFKKA----GAEVIGISGDDSSS 141
Y F+KA G +VIG SG++S+S
Sbjct: 53 -----YLSFQKAIINLGGDVIGFSGEESTS 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,039,176
Number of Sequences: 62578
Number of extensions: 246787
Number of successful extensions: 701
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 108
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)