Query 028030
Match_columns 215
No_of_seqs 191 out of 1824
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:10:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1225 Bcp Peroxiredoxin [Pos 100.0 3.9E-31 8.4E-36 197.2 17.8 148 66-214 2-154 (157)
2 PLN02399 phospholipid hydroper 100.0 3.5E-29 7.5E-34 200.3 17.8 177 33-212 37-234 (236)
3 PF08534 Redoxin: Redoxin; In 100.0 2.3E-29 5E-34 188.7 15.2 138 69-209 1-146 (146)
4 PRK09437 bcp thioredoxin-depen 100.0 6.6E-29 1.4E-33 188.0 17.5 146 66-214 2-154 (154)
5 cd03018 PRX_AhpE_like Peroxire 100.0 7.4E-29 1.6E-33 186.4 16.9 145 68-213 1-148 (149)
6 TIGR03137 AhpC peroxiredoxin. 100.0 9E-29 1.9E-33 193.0 16.8 145 69-214 3-154 (187)
7 cd03015 PRX_Typ2cys Peroxiredo 100.0 3.3E-28 7.1E-33 187.7 17.6 144 70-214 1-155 (173)
8 PRK10382 alkyl hydroperoxide r 100.0 3.8E-28 8.2E-33 188.8 17.5 146 68-214 2-154 (187)
9 PRK13599 putative peroxiredoxi 100.0 5.2E-28 1.1E-32 192.0 17.5 146 69-214 3-154 (215)
10 PF00578 AhpC-TSA: AhpC/TSA fa 100.0 2.6E-28 5.6E-33 177.7 14.1 123 70-194 1-124 (124)
11 PRK00522 tpx lipid hydroperoxi 100.0 9.8E-28 2.1E-32 183.9 17.6 147 66-214 16-167 (167)
12 PRK13191 putative peroxiredoxi 100.0 8.6E-28 1.9E-32 190.9 17.5 147 67-214 6-159 (215)
13 cd03017 PRX_BCP Peroxiredoxin 100.0 4.7E-28 1E-32 180.1 15.1 135 72-209 1-139 (140)
14 PRK13190 putative peroxiredoxi 100.0 1.6E-27 3.4E-32 188.0 17.0 145 68-214 2-152 (202)
15 PTZ00137 2-Cys peroxiredoxin; 100.0 2.7E-27 5.8E-32 191.7 17.6 147 66-214 66-223 (261)
16 cd03014 PRX_Atyp2cys Peroxired 100.0 2.6E-27 5.6E-32 177.0 16.0 139 69-210 1-142 (143)
17 KOG0855 Alkyl hydroperoxide re 100.0 2.6E-27 5.7E-32 174.5 14.9 204 4-215 7-211 (211)
18 PRK15000 peroxidase; Provision 100.0 4.4E-27 9.4E-32 185.0 17.2 145 69-214 3-160 (200)
19 cd03016 PRX_1cys Peroxiredoxin 100.0 4.5E-27 9.8E-32 185.6 17.2 144 70-214 1-152 (203)
20 PRK13189 peroxiredoxin; Provis 100.0 1.3E-26 2.9E-31 185.0 18.4 147 67-214 8-161 (222)
21 PTZ00056 glutathione peroxidas 99.9 7.7E-27 1.7E-31 183.5 15.4 143 68-212 13-178 (199)
22 PTZ00253 tryparedoxin peroxida 99.9 1.3E-26 2.9E-31 182.5 16.4 147 67-214 5-162 (199)
23 cd02971 PRX_family Peroxiredox 99.9 3.9E-26 8.4E-31 169.7 15.5 135 73-207 1-138 (140)
24 TIGR02540 gpx7 putative glutat 99.9 1.2E-26 2.7E-31 175.4 11.1 127 74-203 2-144 (153)
25 PLN02412 probable glutathione 99.9 4.4E-26 9.4E-31 174.8 14.2 141 72-213 7-165 (167)
26 cd00340 GSH_Peroxidase Glutath 99.9 1.8E-26 3.9E-31 174.4 11.4 122 74-200 2-144 (152)
27 PTZ00256 glutathione peroxidas 99.9 7.2E-26 1.6E-30 176.1 14.2 143 70-213 16-182 (183)
28 PRK03147 thiol-disulfide oxido 99.9 6.2E-25 1.3E-29 169.0 16.5 139 66-213 33-172 (173)
29 PRK15412 thiol:disulfide inter 99.9 2.5E-25 5.4E-30 173.4 14.1 130 67-209 38-172 (185)
30 COG0450 AhpC Peroxiredoxin [Po 99.9 4.9E-25 1.1E-29 167.9 15.3 146 68-214 3-159 (194)
31 cd02970 PRX_like2 Peroxiredoxi 99.9 5.2E-25 1.1E-29 165.1 14.1 125 73-197 1-148 (149)
32 cd03013 PRX5_like Peroxiredoxi 99.9 7.7E-25 1.7E-29 165.8 15.0 130 70-200 1-142 (155)
33 TIGR02661 MauD methylamine deh 99.9 1.2E-24 2.5E-29 170.1 16.2 134 67-214 45-180 (189)
34 cd02969 PRX_like1 Peroxiredoxi 99.9 1.7E-24 3.7E-29 166.5 15.5 117 71-195 1-126 (171)
35 cd03012 TlpA_like_DipZ_like Tl 99.9 7.5E-25 1.6E-29 160.4 11.4 107 84-198 13-125 (126)
36 TIGR00385 dsbE periplasmic pro 99.9 1.9E-24 4.1E-29 166.7 13.7 125 67-203 33-162 (173)
37 cd03010 TlpA_like_DsbE TlpA-li 99.9 4.4E-24 9.5E-29 156.4 13.0 118 72-200 1-122 (127)
38 cd02967 mauD Methylamine utili 99.9 5.2E-23 1.1E-27 147.7 13.4 110 75-195 1-112 (114)
39 cd02968 SCO SCO (an acronym fo 99.9 3.2E-23 6.8E-28 154.4 12.7 124 73-197 1-142 (142)
40 PRK10606 btuE putative glutath 99.9 2.2E-22 4.8E-27 155.7 16.0 139 72-212 3-181 (183)
41 PRK14018 trifunctional thiored 99.9 4.6E-22 1E-26 174.6 16.4 132 68-210 32-170 (521)
42 cd03008 TryX_like_RdCVF Trypar 99.9 1.8E-22 3.9E-27 150.5 11.1 103 85-195 16-129 (146)
43 TIGR01626 ytfJ_HI0045 conserve 99.9 2.4E-22 5.3E-27 154.8 12.0 136 66-214 21-181 (184)
44 cd02966 TlpA_like_family TlpA- 99.9 7.8E-22 1.7E-26 140.2 13.0 114 76-197 1-116 (116)
45 cd03011 TlpA_like_ScsD_MtbDsbE 99.9 1.4E-21 3E-26 142.1 12.2 114 75-202 1-116 (123)
46 PLN02919 haloacid dehalogenase 99.9 1.7E-21 3.6E-26 185.0 13.8 136 66-210 389-533 (1057)
47 cd02964 TryX_like_family Trypa 99.8 2.2E-20 4.9E-25 137.7 11.6 104 85-197 8-118 (132)
48 cd03009 TryX_like_TryX_NRX Try 99.8 7.5E-21 1.6E-25 140.0 9.0 110 79-196 3-117 (131)
49 PRK13728 conjugal transfer pro 99.8 2.3E-19 5.1E-24 137.5 11.6 109 69-203 50-162 (181)
50 COG0386 BtuE Glutathione perox 99.8 7.7E-19 1.7E-23 128.6 13.5 140 72-213 3-161 (162)
51 PF13905 Thioredoxin_8: Thiore 99.8 9.7E-19 2.1E-23 121.5 11.2 90 94-191 1-95 (95)
52 KOG0852 Alkyl hydroperoxide re 99.8 9.8E-18 2.1E-22 125.0 13.2 145 69-214 5-159 (196)
53 KOG0854 Alkyl hydroperoxide re 99.8 1.2E-17 2.5E-22 124.7 12.3 148 66-214 4-166 (224)
54 KOG1651 Glutathione peroxidase 99.7 1.1E-16 2.4E-21 118.6 11.6 142 71-213 11-170 (171)
55 COG2077 Tpx Peroxiredoxin [Pos 99.7 4.9E-16 1.1E-20 113.5 11.9 127 67-196 17-148 (158)
56 PF02630 SCO1-SenC: SCO1/SenC; 99.7 5.1E-16 1.1E-20 119.7 11.5 128 70-197 28-173 (174)
57 TIGR02738 TrbB type-F conjugat 99.7 4.9E-16 1.1E-20 117.0 10.1 93 84-200 44-141 (153)
58 cd02950 TxlA TRX-like protein 99.6 1.1E-15 2.3E-20 114.1 8.2 106 78-212 2-109 (142)
59 COG1999 Uncharacterized protei 99.6 1.5E-14 3.3E-19 114.3 13.9 138 76-213 49-205 (207)
60 cd02985 TRX_CDSP32 TRX family, 99.5 1E-13 2.2E-18 97.8 9.8 78 92-198 13-90 (103)
61 KOG2501 Thioredoxin, nucleored 99.5 1.1E-13 2.3E-18 102.8 9.1 110 77-194 15-131 (157)
62 TIGR02740 TraF-like TraF-like 99.5 8.9E-14 1.9E-18 114.2 6.9 105 84-209 156-261 (271)
63 KOG0910 Thioredoxin-like prote 99.5 3.5E-13 7.6E-18 99.2 8.5 85 93-209 60-144 (150)
64 KOG0541 Alkyl hydroperoxide re 99.4 1.6E-12 3.5E-17 95.4 11.0 148 64-211 5-170 (171)
65 cd02999 PDI_a_ERp44_like PDIa 99.4 1.2E-12 2.7E-17 91.8 9.9 77 90-198 14-90 (100)
66 cd02963 TRX_DnaJ TRX domain, D 99.4 3.8E-12 8.3E-17 91.0 11.8 88 92-213 22-109 (111)
67 cd02951 SoxW SoxW family; SoxW 99.4 9.5E-13 2E-17 96.0 8.4 102 93-212 12-118 (125)
68 KOG2792 Putative cytochrome C 99.4 1.3E-12 2.9E-17 103.4 9.1 139 75-213 120-276 (280)
69 cd02948 TRX_NDPK TRX domain, T 99.4 4.2E-12 9E-17 89.4 10.5 85 93-213 16-100 (102)
70 cd02954 DIM1 Dim1 family; Dim1 99.4 3.5E-12 7.6E-17 91.0 9.8 78 93-201 13-90 (114)
71 PF00255 GSHPx: Glutathione pe 99.4 2.3E-12 5E-17 91.0 8.2 81 75-157 2-91 (108)
72 cd02956 ybbN ybbN protein fami 99.4 8.4E-12 1.8E-16 86.5 10.7 75 93-198 11-85 (96)
73 cd02953 DsbDgamma DsbD gamma f 99.3 7E-12 1.5E-16 88.4 8.0 90 93-212 10-103 (104)
74 COG0678 AHP1 Peroxiredoxin [Po 99.3 3.6E-11 7.8E-16 87.9 11.5 144 68-211 3-164 (165)
75 PRK09381 trxA thioredoxin; Pro 99.3 3.7E-11 8E-16 85.3 9.8 77 93-200 20-96 (109)
76 cd02994 PDI_a_TMX PDIa family, 99.3 8.2E-11 1.8E-15 82.3 10.3 85 93-213 16-100 (101)
77 PF13098 Thioredoxin_2: Thiore 99.2 3.6E-12 7.8E-17 90.9 3.0 96 93-199 4-103 (112)
78 cd03002 PDI_a_MPD1_like PDI fa 99.2 9.3E-11 2E-15 83.1 9.5 88 93-212 17-108 (109)
79 cd03003 PDI_a_ERdj5_N PDIa fam 99.2 2.5E-11 5.4E-16 85.1 6.4 76 93-199 17-92 (101)
80 PHA02278 thioredoxin-like prot 99.2 6E-11 1.3E-15 83.6 8.3 80 93-199 13-92 (103)
81 cd02993 PDI_a_APS_reductase PD 99.2 1.7E-10 3.7E-15 82.1 10.3 88 93-211 20-108 (109)
82 PRK10996 thioredoxin 2; Provis 99.2 1.3E-10 2.9E-15 86.3 10.1 76 93-199 51-126 (139)
83 PLN00410 U5 snRNP protein, DIM 99.2 1.8E-10 4E-15 85.2 10.5 76 93-198 22-98 (142)
84 KOG0907 Thioredoxin [Posttrans 99.2 1.2E-10 2.7E-15 82.2 8.9 73 94-198 21-93 (106)
85 cd03004 PDI_a_ERdj5_C PDIa fam 99.2 2.1E-10 4.6E-15 80.7 10.0 77 93-199 18-94 (104)
86 COG3118 Thioredoxin domain-con 99.2 9.7E-11 2.1E-15 95.2 8.6 86 93-210 42-127 (304)
87 cd03005 PDI_a_ERp46 PDIa famil 99.2 1.8E-10 3.9E-15 80.5 8.9 75 95-199 17-93 (102)
88 cd02949 TRX_NTR TRX domain, no 99.2 4.7E-10 1E-14 78.0 10.6 76 93-199 12-87 (97)
89 cd03000 PDI_a_TMX3 PDIa family 99.2 4.7E-10 1E-14 79.0 10.4 75 93-198 14-90 (104)
90 cd02997 PDI_a_PDIR PDIa family 99.2 5.5E-10 1.2E-14 78.2 10.7 79 93-199 16-95 (104)
91 cd03006 PDI_a_EFP1_N PDIa fami 99.1 2.9E-10 6.3E-15 81.4 8.8 76 93-199 28-104 (113)
92 TIGR01295 PedC_BrcD bacterioci 99.1 5.5E-10 1.2E-14 81.1 10.2 88 93-206 22-117 (122)
93 cd02984 TRX_PICOT TRX domain, 99.1 1E-09 2.2E-14 76.0 10.8 74 94-198 14-87 (97)
94 cd02959 ERp19 Endoplasmic reti 99.1 1.8E-10 4E-15 83.0 6.8 80 91-197 16-95 (117)
95 PF00085 Thioredoxin: Thioredo 99.1 1.5E-09 3.2E-14 75.7 11.3 85 94-213 17-101 (103)
96 cd02996 PDI_a_ERp44 PDIa famil 99.1 1E-09 2.2E-14 77.8 10.3 85 93-211 17-107 (108)
97 TIGR01126 pdi_dom protein disu 99.1 6.3E-10 1.4E-14 77.5 8.7 87 93-213 12-99 (102)
98 cd02986 DLP Dim1 family, Dim1- 99.1 1.7E-09 3.6E-14 76.8 10.7 75 93-198 13-87 (114)
99 cd02962 TMX2 TMX2 family; comp 99.1 7.1E-10 1.5E-14 83.4 9.3 80 93-197 46-126 (152)
100 PF00837 T4_deiodinase: Iodoth 99.1 2.5E-09 5.3E-14 84.9 11.9 137 66-214 71-235 (237)
101 cd02952 TRP14_like Human TRX-r 99.1 4.7E-10 1E-14 80.8 7.0 78 93-193 20-105 (119)
102 PTZ00443 Thioredoxin domain-co 99.1 1.4E-09 3.1E-14 86.7 9.9 76 94-200 52-127 (224)
103 TIGR01068 thioredoxin thioredo 99.1 2E-09 4.4E-14 74.6 9.5 75 94-199 14-88 (101)
104 PTZ00051 thioredoxin; Provisio 99.1 1.6E-09 3.4E-14 75.3 8.9 74 93-198 17-90 (98)
105 cd03065 PDI_b_Calsequestrin_N 99.0 1.3E-09 2.7E-14 78.8 8.2 75 95-200 28-107 (120)
106 cd02998 PDI_a_ERp38 PDIa famil 99.0 2.3E-09 5.1E-14 75.0 8.8 78 93-198 17-95 (105)
107 cd02965 HyaE HyaE family; HyaE 99.0 2.6E-09 5.6E-14 75.8 8.8 76 93-199 26-103 (111)
108 PF09695 YtfJ_HI0045: Bacteria 99.0 1.1E-08 2.4E-13 76.1 12.2 140 68-215 1-160 (160)
109 cd02961 PDI_a_family Protein D 99.0 3.9E-09 8.5E-14 72.8 9.0 77 93-198 14-91 (101)
110 cd03001 PDI_a_P5 PDIa family, 99.0 4.7E-09 1E-13 73.4 8.6 75 94-198 18-92 (103)
111 cd02955 SSP411 TRX domain, SSP 98.9 2.9E-08 6.3E-13 72.1 11.9 99 93-214 14-120 (124)
112 PRK00293 dipZ thiol:disulfide 98.9 5E-09 1.1E-13 94.6 9.5 83 90-199 470-557 (571)
113 cd02957 Phd_like Phosducin (Ph 98.9 7.6E-09 1.7E-13 74.0 8.5 72 94-198 24-95 (113)
114 cd02975 PfPDO_like_N Pyrococcu 98.9 1.6E-08 3.4E-13 72.5 9.6 87 94-212 22-109 (113)
115 cd02992 PDI_a_QSOX PDIa family 98.9 2.7E-08 5.9E-13 71.3 10.4 69 94-189 19-89 (114)
116 cd02989 Phd_like_TxnDC9 Phosdu 98.9 1.8E-08 3.9E-13 72.2 9.3 74 93-198 21-94 (113)
117 cd02947 TRX_family TRX family; 98.8 7.1E-08 1.5E-12 65.1 10.6 73 94-198 10-82 (93)
118 PTZ00102 disulphide isomerase; 98.8 2.7E-08 5.9E-13 88.0 9.8 102 79-213 359-462 (477)
119 cd02995 PDI_a_PDI_a'_C PDIa fa 98.8 5.5E-08 1.2E-12 67.9 9.4 84 94-211 18-103 (104)
120 PF05988 DUF899: Bacterial pro 98.8 3.5E-07 7.5E-12 71.4 14.2 128 68-197 40-174 (211)
121 TIGR00424 APS_reduc 5'-adenyly 98.8 4.6E-08 1E-12 85.6 9.7 91 93-213 370-460 (463)
122 cd02958 UAS UAS family; UAS is 98.8 1.7E-07 3.8E-12 67.0 10.9 93 92-212 15-111 (114)
123 cd02987 Phd_like_Phd Phosducin 98.8 9.6E-08 2.1E-12 73.7 10.1 72 94-198 83-154 (175)
124 KOG0908 Thioredoxin-like prote 98.7 3.6E-08 7.9E-13 78.2 7.0 79 88-198 15-93 (288)
125 TIGR00411 redox_disulf_1 small 98.7 1.3E-07 2.9E-12 63.1 8.9 67 97-198 2-68 (82)
126 PLN02309 5'-adenylylsulfate re 98.7 1.2E-07 2.5E-12 83.1 10.6 90 93-213 364-454 (457)
127 cd02988 Phd_like_VIAF Phosduci 98.6 4.8E-07 1E-11 70.8 10.1 70 94-198 102-171 (192)
128 TIGR00412 redox_disulf_2 small 98.6 3.2E-07 6.9E-12 60.9 7.7 62 98-197 2-63 (76)
129 cd02982 PDI_b'_family Protein 98.6 2.9E-07 6.2E-12 64.3 7.7 70 94-191 12-82 (103)
130 TIGR01130 ER_PDI_fam protein d 98.6 4.8E-07 1E-11 79.5 10.2 77 93-199 17-96 (462)
131 PTZ00062 glutaredoxin; Provisi 98.6 4.6E-07 9.9E-12 71.3 8.9 64 95-198 18-81 (204)
132 PTZ00102 disulphide isomerase; 98.5 6E-07 1.3E-11 79.5 9.6 76 93-199 48-125 (477)
133 PF13728 TraF: F plasmid trans 98.5 3.3E-07 7.2E-12 72.9 7.0 95 88-203 114-209 (215)
134 PF13911 AhpC-TSA_2: AhpC/TSA 98.5 9.4E-07 2E-11 63.3 8.2 81 117-197 2-113 (115)
135 PF05176 ATP-synt_10: ATP10 pr 98.5 3.7E-06 8E-11 68.4 12.2 137 69-213 96-250 (252)
136 cd02960 AGR Anterior Gradient 98.5 1.5E-06 3.2E-11 63.5 8.7 77 93-199 22-100 (130)
137 TIGR02187 GlrX_arch Glutaredox 98.4 1.2E-06 2.6E-11 69.8 8.6 79 91-199 16-98 (215)
138 TIGR02739 TraF type-F conjugat 98.4 9.3E-07 2E-11 71.8 7.8 104 88-212 144-248 (256)
139 PHA02125 thioredoxin-like prot 98.4 5.3E-06 1.2E-10 54.8 9.8 72 98-212 2-73 (75)
140 PRK13703 conjugal pilus assemb 98.3 1.8E-06 4E-11 69.7 7.6 104 88-212 137-241 (248)
141 cd02973 TRX_GRX_like Thioredox 98.3 6.2E-06 1.3E-10 52.9 8.1 64 97-194 2-65 (67)
142 TIGR02187 GlrX_arch Glutaredox 98.3 3.6E-06 7.8E-11 67.0 8.4 83 92-213 131-213 (215)
143 TIGR01130 ER_PDI_fam protein d 98.3 4.4E-06 9.5E-11 73.4 9.5 87 93-214 363-452 (462)
144 smart00594 UAS UAS domain. 98.3 6.7E-06 1.5E-10 59.6 8.9 88 93-212 26-121 (122)
145 KOG4498 Uncharacterized conser 98.3 1E-05 2.2E-10 61.8 9.8 135 80-214 35-196 (197)
146 COG0526 TrxA Thiol-disulfide i 98.3 2.5E-06 5.4E-11 59.4 6.2 48 88-137 26-73 (127)
147 cd01659 TRX_superfamily Thiore 98.2 8.4E-06 1.8E-10 50.3 7.7 63 98-188 1-63 (69)
148 PF14595 Thioredoxin_9: Thiore 98.2 2E-06 4.3E-11 63.0 4.9 76 91-197 38-116 (129)
149 PF04592 SelP_N: Selenoprotein 98.2 2.4E-05 5.1E-10 62.0 11.1 115 71-198 7-129 (238)
150 COG4312 Uncharacterized protei 98.2 2.4E-05 5.3E-10 61.1 10.8 121 76-197 54-199 (247)
151 cd03026 AhpF_NTD_C TRX-GRX-lik 98.2 6.4E-06 1.4E-10 56.3 6.5 71 90-194 8-78 (89)
152 PF13899 Thioredoxin_7: Thiore 98.1 3.7E-05 7.9E-10 51.6 9.4 47 93-141 16-65 (82)
153 KOG0190 Protein disulfide isom 98.1 1.3E-05 2.9E-10 70.3 7.5 85 95-213 43-129 (493)
154 cd02991 UAS_ETEA UAS family, E 98.0 7.9E-05 1.7E-09 53.5 9.0 92 92-214 15-115 (116)
155 COG4232 Thiol:disulfide interc 97.7 5.7E-05 1.2E-09 67.2 6.0 81 92-199 472-555 (569)
156 COG2143 Thioredoxin-related pr 97.7 0.00021 4.6E-09 53.2 7.2 107 92-213 40-149 (182)
157 KOG0191 Thioredoxin/protein di 97.7 0.00016 3.6E-09 62.5 7.8 66 93-188 46-111 (383)
158 COG3054 Predicted transcriptio 97.6 0.00015 3.3E-09 53.5 5.8 141 66-214 21-181 (184)
159 PF06110 DUF953: Eukaryotic pr 97.6 0.00057 1.2E-08 49.1 8.0 77 93-191 18-102 (119)
160 KOG0190 Protein disulfide isom 97.6 0.00023 5E-09 62.7 7.0 41 93-134 383-424 (493)
161 cd03007 PDI_a_ERp29_N PDIa fam 97.5 0.00068 1.5E-08 48.6 7.7 92 93-214 17-114 (116)
162 PF13778 DUF4174: Domain of un 97.4 0.00037 8E-09 50.2 5.6 107 88-213 2-109 (118)
163 PRK10877 protein disulfide iso 97.4 0.0013 2.9E-08 53.0 9.0 101 93-211 106-229 (232)
164 KOG0912 Thiol-disulfide isomer 97.4 0.00074 1.6E-08 55.6 7.5 88 94-213 13-103 (375)
165 PRK11657 dsbG disulfide isomer 97.4 0.00045 9.8E-09 56.3 6.1 89 93-192 116-233 (251)
166 PRK11509 hydrogenase-1 operon 97.3 0.0021 4.6E-08 47.0 8.4 76 97-201 36-113 (132)
167 PF03190 Thioredox_DsbH: Prote 97.3 0.0023 5.1E-08 48.5 8.6 83 92-196 35-120 (163)
168 TIGR02196 GlrX_YruB Glutaredox 97.2 0.0029 6.2E-08 40.5 7.5 34 98-139 2-35 (74)
169 TIGR02200 GlrX_actino Glutared 97.2 0.0015 3.2E-08 42.6 5.8 34 98-139 2-35 (77)
170 PF13192 Thioredoxin_3: Thiore 96.8 0.005 1.1E-07 40.5 6.1 69 104-212 7-75 (76)
171 KOG1731 FAD-dependent sulfhydr 96.8 0.001 2.2E-08 59.0 3.2 44 95-139 58-103 (606)
172 cd03020 DsbA_DsbC_DsbG DsbA fa 96.7 0.0069 1.5E-07 47.4 6.7 87 93-192 76-184 (197)
173 cd03019 DsbA_DsbA DsbA family, 96.5 0.0064 1.4E-07 46.3 5.2 41 93-135 14-54 (178)
174 PF00462 Glutaredoxin: Glutare 96.4 0.028 6E-07 34.9 7.2 42 98-147 1-42 (60)
175 PRK10954 periplasmic protein d 96.3 0.025 5.4E-07 44.7 7.9 41 93-135 36-79 (207)
176 TIGR02180 GRX_euk Glutaredoxin 96.2 0.021 4.6E-07 37.7 6.0 45 98-146 1-46 (84)
177 KOG3425 Uncharacterized conser 96.1 0.016 3.5E-07 41.3 5.4 75 90-186 20-103 (128)
178 KOG0191 Thioredoxin/protein di 96.1 0.026 5.7E-07 48.8 7.7 42 95-137 163-205 (383)
179 cd02979 PHOX_C FAD-dependent P 96.1 0.15 3.4E-06 38.9 11.1 116 71-195 1-152 (167)
180 PRK11200 grxA glutaredoxin 1; 96.0 0.044 9.4E-07 36.7 6.8 38 98-138 3-40 (85)
181 cd02976 NrdH NrdH-redoxin (Nrd 95.9 0.049 1.1E-06 34.5 6.7 33 98-138 2-34 (73)
182 KOG4277 Uncharacterized conser 95.9 0.017 3.8E-07 47.7 5.3 71 95-197 44-117 (468)
183 TIGR02190 GlrX-dom Glutaredoxi 95.9 0.05 1.1E-06 35.9 6.7 38 94-139 6-43 (79)
184 PF13462 Thioredoxin_4: Thiore 95.7 0.04 8.7E-07 41.1 6.5 49 86-136 4-54 (162)
185 PRK10329 glutaredoxin-like pro 95.6 0.081 1.7E-06 35.3 6.9 35 98-140 3-37 (81)
186 cd02066 GRX_family Glutaredoxi 95.5 0.074 1.6E-06 33.5 6.3 42 98-147 2-43 (72)
187 cd03023 DsbA_Com1_like DsbA fa 95.4 0.022 4.8E-07 41.9 4.1 38 93-133 4-41 (154)
188 TIGR02194 GlrX_NrdH Glutaredox 95.3 0.089 1.9E-06 34.0 6.1 33 100-140 3-35 (72)
189 PF11009 DUF2847: Protein of u 95.3 0.17 3.6E-06 35.5 7.7 76 94-195 19-94 (105)
190 cd03419 GRX_GRXh_1_2_like Glut 94.9 0.12 2.5E-06 33.9 5.9 35 98-138 2-36 (82)
191 PF02114 Phosducin: Phosducin; 94.7 0.37 8.1E-06 39.6 9.6 72 94-198 146-217 (265)
192 TIGR03759 conj_TIGR03759 integ 94.7 0.46 9.9E-06 37.1 9.4 83 94-189 108-197 (200)
193 PF07976 Phe_hydrox_dim: Pheno 94.6 0.024 5.2E-07 43.4 2.2 109 63-171 25-166 (169)
194 TIGR02183 GRXA Glutaredoxin, G 94.6 0.16 3.4E-06 34.2 6.0 37 98-137 2-38 (86)
195 TIGR03143 AhpF_homolog putativ 94.4 0.22 4.7E-06 45.3 8.2 79 94-212 476-554 (555)
196 COG0695 GrxC Glutaredoxin and 94.3 0.19 4.2E-06 33.3 5.9 44 98-149 3-48 (80)
197 cd02972 DsbA_family DsbA famil 94.3 0.16 3.4E-06 33.8 5.6 36 98-135 1-36 (98)
198 cd03418 GRX_GRXb_1_3_like Glut 94.3 0.24 5.3E-06 31.8 6.3 33 98-138 2-34 (75)
199 TIGR02189 GlrX-like_plant Glut 93.4 0.18 4E-06 34.9 4.7 32 98-137 10-41 (99)
200 TIGR00365 monothiol glutaredox 93.4 0.5 1.1E-05 32.6 6.8 48 93-147 10-60 (97)
201 cd03029 GRX_hybridPRX5 Glutare 93.0 0.54 1.2E-05 30.1 6.2 33 98-138 3-35 (72)
202 TIGR02181 GRX_bact Glutaredoxi 92.9 0.37 8E-06 31.4 5.4 32 99-138 2-33 (79)
203 KOG3414 Component of the U4/U6 92.9 2.3 5E-05 30.8 9.5 42 93-137 22-64 (142)
204 KOG0914 Thioredoxin-like prote 92.9 0.16 3.5E-06 40.2 4.0 42 94-136 144-185 (265)
205 TIGR00995 3a0901s06TIC22 chlor 92.9 0.8 1.7E-05 37.6 8.2 101 69-178 77-181 (270)
206 PRK15317 alkyl hydroperoxide r 92.6 1 2.2E-05 40.7 9.4 62 93-186 115-176 (517)
207 cd03027 GRX_DEP Glutaredoxin ( 92.5 0.66 1.4E-05 29.8 6.1 33 98-138 3-35 (73)
208 PHA03050 glutaredoxin; Provisi 92.4 0.38 8.3E-06 33.9 5.2 22 98-120 15-36 (108)
209 cd03028 GRX_PICOT_like Glutare 92.4 0.49 1.1E-05 32.0 5.6 46 93-146 6-55 (90)
210 cd03032 ArsC_Spx Arsenate Redu 92.2 0.33 7.2E-06 34.5 4.7 63 101-170 4-70 (115)
211 PF05768 DUF836: Glutaredoxin- 92.1 0.25 5.5E-06 32.7 3.8 39 98-140 2-40 (81)
212 cd03036 ArsC_like Arsenate Red 92.0 0.28 6.2E-06 34.7 4.2 62 102-170 4-69 (111)
213 TIGR01617 arsC_related transcr 91.9 0.53 1.2E-05 33.5 5.5 62 100-169 3-68 (117)
214 cd02983 P5_C P5 family, C-term 91.8 2.1 4.7E-05 31.1 8.7 78 95-199 21-102 (130)
215 PRK01655 spxA transcriptional 91.7 0.32 7E-06 35.5 4.3 63 101-170 4-70 (131)
216 PRK08294 phenol 2-monooxygenas 91.3 1.6 3.5E-05 40.4 9.4 124 65-194 460-614 (634)
217 cd02977 ArsC_family Arsenate R 91.1 0.41 8.9E-06 33.3 4.2 63 100-170 3-69 (105)
218 PLN03098 LPA1 LOW PSII ACCUMUL 91.1 1 2.2E-05 39.7 7.3 72 64-137 266-337 (453)
219 PRK10638 glutaredoxin 3; Provi 91.1 1.2 2.7E-05 29.3 6.4 34 98-139 4-37 (83)
220 KOG0911 Glutaredoxin-related p 90.8 0.48 1E-05 37.7 4.6 61 93-156 16-76 (227)
221 PF08235 LNS2: LNS2 (Lipin/Ned 90.7 2.4 5.2E-05 32.0 8.2 62 79-149 3-67 (157)
222 PRK10824 glutaredoxin-4; Provi 90.4 0.77 1.7E-05 32.8 5.1 47 94-148 14-64 (115)
223 PRK12559 transcriptional regul 90.0 0.71 1.5E-05 33.8 4.7 63 101-170 4-70 (131)
224 TIGR03140 AhpF alkyl hydropero 89.5 1.8 3.9E-05 39.0 7.9 62 93-186 116-177 (515)
225 PF04278 Tic22: Tic22-like fam 89.2 1.7 3.7E-05 36.0 6.9 81 72-159 73-160 (274)
226 COG1651 DsbG Protein-disulfide 89.2 0.91 2E-05 36.5 5.3 53 80-133 70-122 (244)
227 COG3019 Predicted metal-bindin 89.0 5.6 0.00012 29.3 8.6 65 99-197 28-92 (149)
228 PRK13344 spxA transcriptional 89.0 1.2 2.6E-05 32.6 5.3 63 101-170 4-70 (132)
229 COG1331 Highly conserved prote 88.6 0.92 2E-05 41.8 5.3 21 93-114 42-62 (667)
230 COG2179 Predicted hydrolase of 88.5 2.6 5.6E-05 32.2 6.8 46 112-157 46-91 (175)
231 PF13848 Thioredoxin_6: Thiore 87.8 8.3 0.00018 29.0 9.6 88 94-213 94-183 (184)
232 cd03035 ArsC_Yffb Arsenate Red 87.5 1 2.2E-05 31.6 3.9 60 101-169 3-66 (105)
233 PRK06184 hypothetical protein; 87.3 6.9 0.00015 35.0 10.1 94 67-196 385-480 (502)
234 PRK10026 arsenate reductase; P 87.1 2.3 5.1E-05 31.5 5.9 87 101-194 6-107 (141)
235 TIGR03143 AhpF_homolog putativ 86.9 2.9 6.4E-05 38.1 7.6 75 90-195 362-439 (555)
236 PRK06183 mhpA 3-(3-hydroxyphen 86.8 8.2 0.00018 34.9 10.4 117 68-212 411-528 (538)
237 PTZ00062 glutaredoxin; Provisi 86.8 2.8 6E-05 33.1 6.5 49 93-148 111-162 (204)
238 KOG4614 Inner membrane protein 84.1 1.5 3.2E-05 35.2 3.7 34 179-213 248-281 (287)
239 PRK08132 FAD-dependent oxidore 84.0 9.5 0.00021 34.6 9.5 116 67-213 426-542 (547)
240 TIGR03765 ICE_PFL_4695 integra 81.6 14 0.0003 25.9 7.3 68 112-189 35-102 (105)
241 COG4545 Glutaredoxin-related p 81.2 11 0.00025 24.6 6.3 42 99-148 5-47 (85)
242 PF01323 DSBA: DSBA-like thior 80.4 6.9 0.00015 29.8 6.3 40 97-137 1-40 (193)
243 PHA03075 glutaredoxin-like pro 79.9 19 0.00042 25.7 8.3 38 95-133 2-39 (123)
244 PF11072 DUF2859: Protein of u 79.5 18 0.00039 26.8 7.8 68 112-189 73-140 (142)
245 PRK12759 bifunctional gluaredo 77.1 5.4 0.00012 35.0 5.3 40 98-145 4-43 (410)
246 COG1393 ArsC Arsenate reductas 76.2 4.5 9.7E-05 28.9 3.8 65 99-170 3-71 (117)
247 PF02966 DIM1: Mitosis protein 75.5 12 0.00025 27.4 5.7 42 93-137 19-61 (133)
248 KOG2603 Oligosaccharyltransfer 74.4 33 0.00071 28.9 8.8 115 73-214 39-164 (331)
249 cd03073 PDI_b'_ERp72_ERp57 PDI 74.1 28 0.0006 24.5 7.9 90 95-213 15-108 (111)
250 cd03034 ArsC_ArsC Arsenate Red 73.4 5.9 0.00013 27.9 3.8 63 101-170 3-69 (112)
251 PF06764 DUF1223: Protein of u 72.7 26 0.00057 27.6 7.6 52 98-152 1-67 (202)
252 cd03060 GST_N_Omega_like GST_N 72.6 8.7 0.00019 24.2 4.2 16 104-119 6-21 (71)
253 TIGR00099 Cof-subfamily Cof su 71.8 49 0.0011 26.5 9.4 37 121-157 25-61 (256)
254 PF09673 TrbC_Ftype: Type-F co 71.5 26 0.00057 24.7 6.8 63 116-187 12-80 (113)
255 COG1419 FlhF Flagellar GTP-bin 71.5 29 0.00063 30.4 8.2 72 111-190 217-292 (407)
256 COG3769 Predicted hydrolase (H 70.2 22 0.00047 28.6 6.5 43 121-163 32-75 (274)
257 TIGR00014 arsC arsenate reduct 67.7 9.9 0.00022 26.8 3.9 63 101-170 3-70 (114)
258 TIGR02742 TrbC_Ftype type-F co 67.3 34 0.00074 25.0 6.7 65 115-188 12-81 (130)
259 KOG1672 ATP binding protein [P 66.4 23 0.00051 27.7 5.9 73 93-197 83-155 (211)
260 KOG1752 Glutaredoxin and relat 65.7 24 0.00052 24.6 5.5 46 97-148 15-61 (104)
261 smart00775 LNS2 LNS2 domain. T 65.1 8.1 0.00018 29.0 3.2 38 150-192 118-155 (157)
262 KOG1615 Phosphoserine phosphat 63.5 30 0.00064 27.3 6.0 38 115-152 91-128 (227)
263 TIGR01485 SPP_plant-cyano sucr 63.4 21 0.00045 28.7 5.6 44 111-154 20-63 (249)
264 PF08821 CGGC: CGGC domain; I 63.1 33 0.00072 24.1 5.8 64 84-152 25-101 (107)
265 PRK15126 thiamin pyrimidine py 63.1 80 0.0017 25.5 9.8 36 122-157 29-64 (272)
266 PF06053 DUF929: Domain of unk 63.0 7.1 0.00015 31.8 2.7 32 93-125 57-88 (249)
267 cd03041 GST_N_2GST_N GST_N fam 62.9 37 0.00081 21.6 6.3 19 101-119 4-22 (77)
268 PRK10853 putative reductase; P 62.8 19 0.00041 25.7 4.6 47 99-152 2-52 (118)
269 cd03031 GRX_GRX_like Glutaredo 62.5 36 0.00079 25.3 6.2 26 106-138 15-40 (147)
270 PF03960 ArsC: ArsC family; I 61.8 19 0.00042 25.0 4.5 58 104-168 3-64 (110)
271 COG0552 FtsY Signal recognitio 60.5 1.1E+02 0.0023 26.3 9.2 90 93-191 136-233 (340)
272 PF00875 DNA_photolyase: DNA p 60.1 34 0.00074 25.5 5.9 46 112-157 50-95 (165)
273 KOG2507 Ubiquitin regulatory p 58.5 60 0.0013 28.7 7.5 30 177-208 78-107 (506)
274 PRK10976 putative hydrolase; P 58.0 97 0.0021 24.9 8.9 36 122-157 29-64 (266)
275 cd03033 ArsC_15kD Arsenate Red 57.3 37 0.00079 24.0 5.3 44 101-151 4-51 (113)
276 PF03544 TonB_C: Gram-negative 56.3 17 0.00037 23.2 3.3 34 181-214 20-54 (79)
277 cd03059 GST_N_SspA GST_N famil 55.7 12 0.00026 23.4 2.4 15 104-118 6-20 (73)
278 PF06953 ArsD: Arsenical resis 54.5 80 0.0017 22.8 8.7 38 100-137 6-49 (123)
279 KOG0913 Thiol-disulfide isomer 54.4 2.2 4.8E-05 34.2 -1.5 37 93-131 39-75 (248)
280 PF00448 SRP54: SRP54-type pro 54.0 29 0.00064 27.0 4.8 57 98-158 3-64 (196)
281 PF08282 Hydrolase_3: haloacid 53.5 1E+02 0.0022 23.8 8.4 76 110-213 17-92 (254)
282 PF08806 Sep15_SelM: Sep15/Sel 52.9 19 0.00041 23.7 3.0 33 175-209 40-72 (78)
283 PRK10178 D-alanyl-D-alanine di 51.7 1.1E+02 0.0024 23.7 7.5 109 70-195 10-119 (184)
284 cd01460 vWA_midasin VWA_Midasi 51.6 56 0.0012 27.0 6.2 31 109-139 175-205 (266)
285 PRK12359 flavodoxin FldB; Prov 51.3 53 0.0011 25.1 5.6 13 141-153 103-115 (172)
286 cd03067 PDI_b_PDIR_N PDIb fami 50.7 81 0.0018 22.1 5.8 53 96-152 21-73 (112)
287 TIGR01689 EcbF-BcbF capsule bi 50.1 76 0.0016 22.9 6.0 37 121-157 33-84 (126)
288 cd00570 GST_N_family Glutathio 50.1 26 0.00057 20.8 3.3 17 104-120 6-22 (71)
289 TIGR01662 HAD-SF-IIIA HAD-supe 50.1 60 0.0013 22.9 5.6 43 113-155 26-76 (132)
290 cd08356 Glo_EDI_BRP_like_17 Th 49.0 54 0.0012 22.5 5.1 51 131-194 58-111 (113)
291 PF01216 Calsequestrin: Calseq 48.8 1.8E+02 0.0039 25.2 9.2 47 158-213 99-145 (383)
292 PF05116 S6PP: Sucrose-6F-phos 48.7 57 0.0012 26.3 5.8 56 108-163 15-72 (247)
293 TIGR00283 arch_pth2 peptidyl-t 48.3 97 0.0021 22.0 6.7 42 119-160 39-83 (115)
294 TIGR03590 PseG pseudaminic aci 48.3 1.4E+02 0.003 24.5 8.2 32 125-156 50-86 (279)
295 PRK14324 glmM phosphoglucosami 47.5 1.2E+02 0.0025 26.9 8.0 36 139-192 223-258 (446)
296 KOG3363 Uncharacterized conser 46.3 65 0.0014 24.5 5.2 69 128-213 113-188 (196)
297 cd01427 HAD_like Haloacid deha 45.3 55 0.0012 22.4 4.8 40 112-151 24-63 (139)
298 PHA02087 hypothetical protein 45.3 37 0.00081 21.7 3.2 56 130-194 2-59 (83)
299 PRK01158 phosphoglycolate phos 45.3 86 0.0019 24.4 6.3 35 122-156 30-64 (230)
300 PLN02367 lactoylglutathione ly 45.0 1.2E+02 0.0027 24.5 7.0 55 127-197 168-222 (233)
301 PRK01018 50S ribosomal protein 44.7 1E+02 0.0022 21.1 8.0 49 122-170 26-78 (99)
302 COG4820 EutJ Ethanolamine util 44.5 1.1E+02 0.0024 24.5 6.4 108 76-195 42-166 (277)
303 cd07257 THT_oxygenase_C The C- 44.3 1.2E+02 0.0027 22.1 7.7 57 127-197 66-125 (153)
304 PF04723 GRDA: Glycine reducta 44.0 22 0.00048 26.2 2.4 36 97-133 31-73 (150)
305 PF13743 Thioredoxin_5: Thiore 43.8 19 0.00042 27.5 2.2 34 100-135 2-35 (176)
306 PRK00771 signal recognition pa 43.6 2.2E+02 0.0048 25.3 9.0 58 94-155 93-155 (437)
307 cd03072 PDI_b'_ERp44 PDIb' fam 43.2 1.1E+02 0.0024 21.3 6.3 53 110-189 29-84 (111)
308 cd01450 vWFA_subfamily_ECM Von 43.0 1E+02 0.0022 22.0 6.1 48 95-146 103-152 (161)
309 PRK14315 glmM phosphoglucosami 43.0 1.6E+02 0.0034 26.0 8.2 12 181-192 248-259 (448)
310 COG3011 Predicted thiol-disulf 42.8 1.1E+02 0.0024 22.6 5.9 68 94-192 6-73 (137)
311 cd07252 BphC1-RGP6_N_like N-te 42.7 1.1E+02 0.0024 21.0 6.6 18 181-198 101-118 (120)
312 PF04244 DPRP: Deoxyribodipyri 42.6 1.4E+02 0.0031 23.9 7.1 45 114-158 48-99 (224)
313 PLN03042 Lactoylglutathione ly 42.1 1.5E+02 0.0033 22.8 7.1 55 127-197 120-174 (185)
314 COG0561 Cof Predicted hydrolas 41.8 66 0.0014 25.8 5.3 47 113-159 21-67 (264)
315 TIGR00591 phr2 photolyase PhrI 41.7 2.1E+02 0.0046 25.3 8.8 45 112-156 75-119 (454)
316 KOG3170 Conserved phosducin-li 41.3 49 0.0011 26.2 4.0 40 93-135 110-149 (240)
317 cd03037 GST_N_GRX2 GST_N famil 41.2 86 0.0019 19.3 5.0 15 104-118 6-20 (71)
318 TIGR01668 YqeG_hyp_ppase HAD s 41.2 48 0.001 25.0 4.1 42 112-153 43-85 (170)
319 cd03045 GST_N_Delta_Epsilon GS 41.1 25 0.00053 22.0 2.1 16 104-119 6-21 (74)
320 PF01323 DSBA: DSBA-like thior 40.9 39 0.00085 25.5 3.6 52 135-198 119-182 (193)
321 cd05017 SIS_PGI_PMI_1 The memb 40.8 1.2E+02 0.0027 21.1 6.0 33 121-155 63-95 (119)
322 COG1636 Uncharacterized protei 40.8 67 0.0015 25.1 4.7 46 104-155 9-65 (204)
323 PF00702 Hydrolase: haloacid d 40.2 56 0.0012 24.9 4.4 39 114-152 129-167 (215)
324 PF01106 NifU: NifU-like domai 40.2 74 0.0016 20.2 4.2 28 82-111 14-41 (68)
325 cd03025 DsbA_FrnE_like DsbA fa 40.2 33 0.00071 26.0 3.1 33 98-132 3-35 (193)
326 PRK10530 pyridoxal phosphate ( 39.7 1.9E+02 0.0042 23.0 9.1 36 122-157 30-65 (272)
327 TIGR01352 tonB_Cterm TonB fami 39.5 51 0.0011 20.5 3.5 33 181-213 14-47 (74)
328 COG0560 SerB Phosphoserine pho 39.1 1.9E+02 0.0041 22.7 7.8 29 114-142 79-107 (212)
329 TIGR01616 nitro_assoc nitrogen 39.1 1.3E+02 0.0029 21.6 5.9 45 98-150 3-51 (126)
330 cd07238 Glo_EDI_BRP_like_5 Thi 39.1 98 0.0021 20.7 5.2 50 131-195 60-109 (112)
331 PRK12702 mannosyl-3-phosphogly 39.0 1.2E+02 0.0026 25.6 6.3 43 122-164 28-70 (302)
332 PF07411 DUF1508: Domain of un 38.9 42 0.00092 19.8 2.7 33 181-214 7-39 (49)
333 TIGR02463 MPGP_rel mannosyl-3- 38.9 1.1E+02 0.0024 23.7 6.0 41 120-160 24-65 (221)
334 COG1129 MglA ABC-type sugar tr 38.9 2.1E+02 0.0047 25.9 8.2 29 108-136 175-203 (500)
335 PF10673 DUF2487: Protein of u 38.7 69 0.0015 23.8 4.4 18 116-133 72-89 (142)
336 cd08351 ChaP_like ChaP, an enz 38.7 1.2E+02 0.0026 20.9 5.7 17 180-196 104-120 (123)
337 KOG2116 Protein involved in pl 38.1 1.2E+02 0.0025 28.5 6.4 34 115-148 561-597 (738)
338 PF10453 NUFIP1: Nuclear fragi 37.6 23 0.00049 21.8 1.4 23 134-156 15-37 (56)
339 cd03051 GST_N_GTT2_like GST_N 37.5 71 0.0015 19.5 3.9 17 104-120 6-22 (74)
340 PF15092 UPF0728: Uncharacteri 37.0 97 0.0021 20.9 4.4 43 95-137 5-47 (88)
341 PF07315 DUF1462: Protein of u 36.8 1.4E+02 0.003 20.4 5.6 42 107-148 9-60 (93)
342 cd08344 MhqB_like_N N-terminal 36.6 1.3E+02 0.0029 20.2 6.0 18 181-198 93-110 (112)
343 TIGR01675 plant-AP plant acid 36.6 99 0.0021 24.9 5.3 40 113-152 121-163 (229)
344 PRK04322 peptidyl-tRNA hydrola 36.3 1.5E+02 0.0034 20.9 6.8 42 119-160 37-81 (113)
345 PF11211 DUF2997: Protein of u 36.3 86 0.0019 18.5 3.7 17 182-198 2-18 (48)
346 KOG0780 Signal recognition par 35.9 1.8E+02 0.0038 25.8 6.9 93 88-191 93-195 (483)
347 cd03052 GST_N_GDAP1 GST_N fami 35.9 48 0.001 21.0 2.9 11 104-114 6-16 (73)
348 PF02670 DXP_reductoisom: 1-de 35.6 41 0.00089 24.5 2.7 39 121-160 18-57 (129)
349 PLN02382 probable sucrose-phos 35.6 3.1E+02 0.0067 24.1 9.0 42 111-152 28-69 (413)
350 cd08362 BphC5-RrK37_N_like N-t 35.5 1.2E+02 0.0025 20.5 5.1 18 181-198 101-118 (120)
351 TIGR00521 coaBC_dfp phosphopan 35.4 2.6E+02 0.0057 24.4 8.1 72 128-213 315-390 (390)
352 PRK05579 bifunctional phosphop 35.0 1.8E+02 0.0039 25.5 7.1 71 130-212 320-393 (399)
353 TIGR01490 HAD-SF-IB-hyp1 HAD-s 34.9 1.3E+02 0.0028 22.8 5.7 40 113-152 88-127 (202)
354 PHA00649 hypothetical protein 34.9 23 0.0005 22.7 1.1 22 128-149 22-43 (83)
355 TIGR03499 FlhF flagellar biosy 34.7 2.6E+02 0.0056 23.0 9.5 83 95-189 193-282 (282)
356 PLN00139 hypothetical protein; 34.6 87 0.0019 26.5 5.0 49 111-159 149-220 (320)
357 PHA02762 hypothetical protein; 34.5 88 0.0019 19.0 3.5 30 181-212 30-59 (62)
358 PF14062 DUF4253: Domain of un 34.4 1.5E+02 0.0032 20.9 5.4 30 105-137 24-53 (111)
359 PF09419 PGP_phosphatase: Mito 34.3 1.3E+02 0.0028 23.0 5.4 97 71-170 15-130 (168)
360 PF06188 HrpE: HrpE/YscL/FliH 34.2 1.9E+02 0.0041 22.5 6.4 64 116-195 119-183 (191)
361 cd03055 GST_N_Omega GST_N fami 34.1 1E+02 0.0022 20.3 4.4 16 104-119 24-39 (89)
362 PRK09542 manB phosphomannomuta 34.1 1.7E+02 0.0036 25.9 6.9 33 141-191 217-249 (445)
363 PF15632 ATPgrasp_Ter: ATP-gra 33.8 2.6E+02 0.0057 23.8 7.7 97 117-214 79-193 (329)
364 PF12681 Glyoxalase_2: Glyoxal 33.7 1.4E+02 0.003 19.6 5.8 14 181-194 94-107 (108)
365 TIGR01686 FkbH FkbH-like domai 33.5 1.1E+02 0.0024 25.6 5.4 36 113-148 32-67 (320)
366 cd05802 GlmM GlmM is a bacteri 33.3 2.5E+02 0.0054 24.6 7.9 12 181-192 241-252 (434)
367 TIGR01482 SPP-subfamily Sucros 33.3 1.9E+02 0.0041 22.3 6.5 34 122-155 25-58 (225)
368 PF13103 TonB_2: TonB C termin 33.1 1.1E+02 0.0024 19.7 4.5 14 181-194 30-43 (85)
369 PRK13265 glycine/sarcosine/bet 32.9 44 0.00094 24.7 2.4 35 97-132 32-73 (154)
370 PRK00366 ispG 4-hydroxy-3-meth 32.8 46 0.001 28.6 2.9 79 107-214 271-355 (360)
371 PRK05370 argininosuccinate syn 32.7 2E+02 0.0043 25.7 6.9 70 88-167 4-81 (447)
372 cd02990 UAS_FAF1 UAS family, F 32.6 2E+02 0.0044 21.1 10.0 44 163-213 88-134 (136)
373 PRK10887 glmM phosphoglucosami 32.6 2.7E+02 0.0058 24.6 7.9 12 181-192 243-254 (443)
374 cd08353 Glo_EDI_BRP_like_7 Thi 32.6 1.8E+02 0.0039 20.5 6.9 54 127-195 86-139 (142)
375 COG1490 Dtd D-Tyr-tRNAtyr deac 32.4 61 0.0013 23.9 3.1 34 129-162 28-61 (145)
376 TIGR02765 crypto_DASH cryptoch 32.3 1.6E+02 0.0035 25.7 6.5 44 113-156 59-102 (429)
377 PTZ00106 60S ribosomal protein 32.2 1.8E+02 0.0039 20.4 7.8 49 122-170 35-87 (108)
378 PF03460 NIR_SIR_ferr: Nitrite 32.2 1.3E+02 0.0028 18.7 4.5 39 110-148 22-68 (69)
379 TIGR02461 osmo_MPG_phos mannos 32.1 1.7E+02 0.0038 23.1 6.1 39 122-160 25-63 (225)
380 PHA02552 4 head completion pro 32.0 2.2E+02 0.0048 21.4 6.6 28 141-170 122-149 (151)
381 PF13419 HAD_2: Haloacid dehal 31.9 72 0.0016 23.0 3.7 37 116-152 81-117 (176)
382 PF01740 STAS: STAS domain; I 31.8 1.7E+02 0.0037 20.0 6.2 53 95-151 49-101 (117)
383 PF04800 ETC_C1_NDUFA4: ETC co 31.5 61 0.0013 22.5 2.9 29 132-160 51-79 (101)
384 PRK14974 cell division protein 31.5 3.3E+02 0.0072 23.2 8.5 57 94-154 138-199 (336)
385 TIGR01488 HAD-SF-IB Haloacid D 31.5 1.2E+02 0.0026 22.3 4.9 18 141-158 80-97 (177)
386 COG1651 DsbG Protein-disulfide 31.4 36 0.00077 27.1 2.1 28 94-122 118-145 (244)
387 KOG2884 26S proteasome regulat 31.3 2.8E+02 0.0061 22.3 6.9 53 95-151 107-163 (259)
388 KOG2961 Predicted hydrolase (H 31.0 2.1E+02 0.0046 21.7 5.8 78 73-153 21-112 (190)
389 PRK14316 glmM phosphoglucosami 30.9 2.9E+02 0.0063 24.3 7.9 11 181-191 245-255 (448)
390 PF05673 DUF815: Protein of un 30.9 1.2E+02 0.0027 24.7 5.0 57 97-159 55-114 (249)
391 PRK09974 putative regulator Pr 30.8 2E+02 0.0043 20.4 5.9 48 161-214 24-71 (111)
392 cd07267 THT_Oxygenase_N N-term 30.7 1.7E+02 0.0037 19.7 6.9 54 128-197 57-110 (113)
393 cd01452 VWA_26S_proteasome_sub 30.7 1.7E+02 0.0036 22.8 5.6 36 115-150 123-162 (187)
394 PRK11478 putative lyase; Provi 30.6 1.8E+02 0.0039 19.9 6.9 52 128-195 75-127 (129)
395 PF06018 CodY: CodY GAF-like d 30.6 78 0.0017 24.4 3.7 18 181-198 37-54 (177)
396 COG0159 TrpA Tryptophan syntha 30.5 1.4E+02 0.003 24.7 5.3 54 107-160 104-157 (265)
397 PF04551 GcpE: GcpE protein; 30.4 28 0.00061 29.9 1.3 77 107-214 271-357 (359)
398 PRK14318 glmM phosphoglucosami 30.3 3.3E+02 0.0071 24.1 8.1 27 128-154 175-203 (448)
399 KOG0394 Ras-related GTPase [Ge 30.3 96 0.0021 24.3 4.0 53 97-150 76-151 (210)
400 TIGR01455 glmM phosphoglucosam 29.9 3.3E+02 0.0071 24.0 8.0 12 181-192 244-255 (443)
401 PRK10867 signal recognition pa 29.8 4E+02 0.0087 23.7 8.6 58 94-155 98-161 (433)
402 TIGR01680 Veg_Stor_Prot vegeta 29.7 1.5E+02 0.0033 24.6 5.4 40 113-152 146-188 (275)
403 cd08573 GDPD_GDE1 Glycerophosp 29.6 1.6E+02 0.0035 23.8 5.6 33 120-152 220-252 (258)
404 cd02430 PTH2 Peptidyl-tRNA hyd 29.5 2.1E+02 0.0045 20.3 6.7 42 119-160 39-83 (115)
405 cd08350 BLMT_like BLMT, a bleo 29.3 1.7E+02 0.0037 19.9 5.2 51 132-195 62-117 (120)
406 PRK15414 phosphomannomutase Cp 29.3 3.8E+02 0.0083 23.8 8.4 34 141-192 228-261 (456)
407 PF02120 Flg_hook: Flagellar h 29.1 1.6E+02 0.0034 19.0 4.6 44 93-137 34-77 (85)
408 PF03193 DUF258: Protein of un 29.0 1.7E+02 0.0037 22.1 5.2 42 118-159 2-43 (161)
409 COG0269 SgbH 3-hexulose-6-phos 28.6 1.8E+02 0.0039 23.2 5.4 49 109-157 87-137 (217)
410 PF06616 BsuBI_PstI_RE: BsuBI/ 28.5 1.5E+02 0.0032 25.0 5.2 71 69-152 210-281 (306)
411 smart00481 POLIIIAc DNA polyme 28.4 1.5E+02 0.0032 18.2 5.5 37 117-153 17-57 (67)
412 PRK14323 glmM phosphoglucosami 28.4 3E+02 0.0064 24.3 7.5 12 181-192 245-256 (440)
413 PHA02530 pseT polynucleotide k 28.4 2.4E+02 0.0051 23.1 6.6 113 93-215 74-202 (300)
414 PF12687 DUF3801: Protein of u 27.7 1.1E+02 0.0025 24.0 4.2 33 128-160 33-65 (204)
415 COG0248 GppA Exopolyphosphatas 27.4 1.1E+02 0.0025 27.6 4.7 56 116-171 63-123 (492)
416 cd08343 ED_TypeI_classII_C C-t 27.4 2.2E+02 0.0047 19.8 7.0 57 128-198 59-118 (131)
417 PLN02640 glucose-6-phosphate 1 27.3 2.4E+02 0.0052 26.1 6.7 67 69-136 60-129 (573)
418 PRK10291 glyoxalase I; Provisi 26.8 2.2E+02 0.0048 19.7 6.0 56 128-197 65-120 (129)
419 cd07245 Glo_EDI_BRP_like_9 Thi 26.8 1.8E+02 0.004 18.8 6.2 49 129-193 65-113 (114)
420 PRK14317 glmM phosphoglucosami 26.7 3.9E+02 0.0085 23.7 8.0 12 181-192 260-271 (465)
421 PF14427 Pput2613-deam: Pput_2 26.6 87 0.0019 22.2 3.0 32 87-119 59-90 (118)
422 PF05228 CHASE4: CHASE4 domain 26.6 1.1E+02 0.0025 22.2 4.0 14 181-194 52-65 (161)
423 PRK06934 flavodoxin; Provision 26.5 1.3E+02 0.0028 24.1 4.4 9 141-149 209-217 (221)
424 TIGR01486 HAD-SF-IIB-MPGP mann 26.5 2.2E+02 0.0047 22.8 5.9 36 121-156 25-60 (256)
425 COG0415 PhrB Deoxyribodipyrimi 26.4 1.6E+02 0.0036 26.4 5.4 39 114-152 54-92 (461)
426 cd02511 Beta4Glucosyltransfera 26.4 1.8E+02 0.0038 22.7 5.3 57 129-190 27-83 (229)
427 PRK08244 hypothetical protein; 26.3 51 0.0011 29.4 2.4 35 68-102 391-427 (493)
428 PRK01122 potassium-transportin 26.3 1.6E+02 0.0034 27.9 5.5 14 144-157 455-468 (679)
429 PRK14314 glmM phosphoglucosami 26.2 3.1E+02 0.0068 24.2 7.2 12 181-192 249-260 (450)
430 TIGR01491 HAD-SF-IB-PSPlk HAD- 26.0 2.1E+02 0.0046 21.4 5.6 39 114-152 82-120 (201)
431 COG0810 TonB Periplasmic prote 26.0 1.4E+02 0.003 24.0 4.7 46 162-213 171-217 (244)
432 TIGR01487 SPP-like sucrose-pho 26.0 2.6E+02 0.0057 21.5 6.2 35 122-156 28-62 (215)
433 PRK05703 flhF flagellar biosyn 25.9 4.5E+02 0.0099 23.2 8.1 56 127-190 250-310 (424)
434 TIGR00338 serB phosphoserine p 25.9 1.5E+02 0.0032 22.9 4.7 39 114-152 87-125 (219)
435 TIGR03365 Bsubt_queE 7-cyano-7 25.9 3.5E+02 0.0075 21.6 7.8 70 81-155 12-105 (238)
436 PF12710 HAD: haloacid dehalog 25.8 99 0.0022 23.1 3.6 34 119-152 96-129 (192)
437 PF05378 Hydant_A_N: Hydantoin 25.6 1.3E+02 0.0028 23.0 4.1 40 111-150 130-176 (176)
438 PRK14010 potassium-transportin 25.3 1.7E+02 0.0038 27.6 5.6 27 125-151 454-480 (673)
439 cd08357 Glo_EDI_BRP_like_18 Th 25.3 1.6E+02 0.0035 19.9 4.4 14 181-194 109-122 (125)
440 cd08361 PpCmtC_N N-terminal do 25.3 2.4E+02 0.0051 19.5 5.3 18 181-198 103-120 (124)
441 PRK14321 glmM phosphoglucosami 25.2 4.2E+02 0.0091 23.4 7.9 12 181-192 238-249 (449)
442 PRK13601 putative L7Ae-like ri 25.0 2.1E+02 0.0046 18.9 7.4 46 124-170 20-69 (82)
443 PF10281 Ish1: Putative stress 25.0 67 0.0014 17.7 1.8 20 138-157 5-24 (38)
444 COG1523 PulA Type II secretory 24.6 1.7E+02 0.0037 27.8 5.4 36 97-133 243-283 (697)
445 TIGR01449 PGP_bact 2-phosphogl 24.6 1.3E+02 0.0029 22.9 4.2 38 115-152 88-125 (213)
446 TIGR01684 viral_ppase viral ph 24.6 3.1E+02 0.0067 23.1 6.4 38 115-152 149-186 (301)
447 COG5429 Uncharacterized secret 24.6 53 0.0012 26.6 1.8 35 96-135 42-76 (261)
448 PLN02954 phosphoserine phospha 24.5 1.8E+02 0.0039 22.5 5.0 39 114-152 86-124 (224)
449 PF11720 Inhibitor_I78: Peptid 24.4 1.1E+02 0.0025 18.7 3.0 20 177-196 40-59 (60)
450 TIGR03556 photolyase_8HDF deox 24.2 2.6E+02 0.0057 25.0 6.4 43 112-154 52-94 (471)
451 PRK13239 alkylmercury lyase; P 24.0 1.7E+02 0.0036 23.2 4.5 47 138-195 49-95 (206)
452 PF07449 HyaE: Hydrogenase-1 e 24.0 1.3E+02 0.0028 21.2 3.5 31 159-197 70-100 (107)
453 TIGR02471 sucr_syn_bact_C sucr 24.0 2.6E+02 0.0055 22.0 5.8 43 117-160 20-64 (236)
454 PRK09267 flavodoxin FldA; Vali 24.0 2.3E+02 0.005 21.0 5.3 11 142-152 105-115 (169)
455 PRK04596 minC septum formation 24.0 2.2E+02 0.0047 23.3 5.2 56 92-152 48-103 (248)
456 cd03061 GST_N_CLIC GST_N famil 23.8 1E+02 0.0022 20.9 2.9 15 106-120 21-35 (91)
457 PLN02591 tryptophan synthase 23.7 3.4E+02 0.0074 22.1 6.4 44 115-158 93-139 (250)
458 PF12017 Tnp_P_element: Transp 23.7 3.8E+02 0.0082 21.7 6.6 25 115-139 196-220 (236)
459 TIGR01484 HAD-SF-IIB HAD-super 23.6 2.8E+02 0.0061 21.0 5.9 36 115-150 20-55 (204)
460 PF01251 Ribosomal_S7e: Riboso 23.5 94 0.002 24.2 3.0 46 86-133 46-92 (189)
461 PRK05778 2-oxoglutarate ferred 23.3 81 0.0018 26.5 2.8 12 100-111 14-25 (301)
462 PRK13111 trpA tryptophan synth 23.1 2.9E+02 0.0063 22.6 6.0 46 116-161 105-153 (258)
463 PRK12723 flagellar biosynthesi 23.1 5.1E+02 0.011 22.6 9.4 87 95-191 173-266 (388)
464 PHA03398 viral phosphatase sup 23.0 2.8E+02 0.0061 23.4 5.9 38 115-152 151-188 (303)
465 PF14433 SUKH-3: SUKH-3 immuni 23.0 3E+02 0.0065 19.9 6.6 32 181-212 104-136 (142)
466 PF08285 DPM3: Dolichol-phosph 23.0 84 0.0018 21.4 2.3 25 107-131 66-91 (91)
467 PF02852 Pyr_redox_dim: Pyridi 22.9 2.1E+02 0.0044 19.5 4.5 18 179-196 49-67 (110)
468 PRK11031 guanosine pentaphosph 22.9 2E+02 0.0043 26.0 5.4 60 112-171 62-126 (496)
469 PF04134 DUF393: Protein of un 22.8 89 0.0019 21.5 2.6 30 101-134 2-31 (114)
470 TIGR01285 nifN nitrogenase mol 22.8 2.8E+02 0.0062 24.5 6.3 69 138-212 361-429 (432)
471 PF08497 Radical_SAM_N: Radica 22.8 3.2E+02 0.0069 23.0 6.1 33 128-160 16-56 (302)
472 cd01453 vWA_transcription_fact 22.7 3.5E+02 0.0075 20.5 7.5 49 118-167 126-175 (183)
473 TIGR01497 kdpB K+-transporting 22.7 2.2E+02 0.0047 27.0 5.7 28 124-151 458-485 (675)
474 cd07241 Glo_EDI_BRP_like_3 Thi 22.6 2.5E+02 0.0054 18.8 5.6 13 181-193 111-123 (125)
475 COG4837 Uncharacterized protei 22.5 2.7E+02 0.0058 19.2 5.2 51 98-148 7-67 (106)
476 PF02743 Cache_1: Cache domain 22.4 59 0.0013 20.8 1.5 15 180-194 54-68 (81)
477 PRK03669 mannosyl-3-phosphogly 22.3 2.9E+02 0.0062 22.3 5.9 31 122-152 34-64 (271)
478 TIGR01681 HAD-SF-IIIC HAD-supe 22.3 2.9E+02 0.0063 19.5 5.8 39 112-150 29-68 (128)
479 TIGR03831 YgiT_finger YgiT-typ 22.2 41 0.00089 18.9 0.6 20 92-111 20-39 (46)
480 COG0452 Dfp Phosphopantothenoy 22.2 4.9E+02 0.011 22.8 7.5 71 130-213 315-388 (392)
481 cd05805 MPG1_transferase GTP-m 22.2 5.1E+02 0.011 22.7 7.8 29 127-155 167-197 (441)
482 TIGR02743 TraW type-F conjugat 22.1 4E+02 0.0086 21.0 7.2 50 128-192 148-197 (202)
483 TIGR02826 RNR_activ_nrdG3 anae 22.0 77 0.0017 23.5 2.2 71 86-157 6-95 (147)
484 PRK11033 zntA zinc/cadmium/mer 22.0 2.3E+02 0.005 27.0 5.9 41 113-153 569-609 (741)
485 TIGR00612 ispG_gcpE 1-hydroxy- 22.0 5.2E+02 0.011 22.3 7.3 62 94-159 17-79 (346)
486 TIGR01753 flav_short flavodoxi 22.0 2.9E+02 0.0062 19.3 5.4 7 143-149 103-109 (140)
487 PF11303 DUF3105: Protein of u 22.0 2.6E+02 0.0055 20.4 4.9 26 97-125 51-76 (130)
488 COG4615 PvdE ABC-type sideroph 21.9 3.2E+02 0.007 24.4 6.1 51 96-148 469-521 (546)
489 PF13417 GST_N_3: Glutathione 21.8 1.6E+02 0.0034 18.5 3.5 15 104-118 4-18 (75)
490 COG0613 Predicted metal-depend 21.8 1.3E+02 0.0028 24.6 3.7 36 98-136 3-38 (258)
491 cd08352 Glo_EDI_BRP_like_1 Thi 21.7 2.6E+02 0.0055 18.6 6.4 54 127-195 71-124 (125)
492 PF11287 DUF3088: Protein of u 21.7 1.9E+02 0.004 20.6 3.9 41 107-149 24-65 (112)
493 TIGR00064 ftsY signal recognit 21.5 4.6E+02 0.0099 21.5 9.3 57 94-154 70-131 (272)
494 cd03084 phosphohexomutase The 21.4 4.4E+02 0.0096 22.3 7.1 34 141-192 165-198 (355)
495 cd07233 Glyoxalase_I Glyoxalas 21.3 2.6E+02 0.0057 18.6 6.6 50 128-193 70-119 (121)
496 cd08359 Glo_EDI_BRP_like_22 Th 21.2 2.7E+02 0.0058 18.7 6.2 49 131-194 69-117 (119)
497 COG0821 gcpE 1-hydroxy-2-methy 21.2 5.4E+02 0.012 22.2 7.3 61 95-159 20-81 (361)
498 cd06006 R3H_unknown_2 R3H doma 21.2 1.1E+02 0.0024 18.9 2.5 25 161-185 34-58 (59)
499 cd07263 Glo_EDI_BRP_like_16 Th 21.2 2.5E+02 0.0055 18.4 6.4 51 128-194 67-117 (119)
500 PF14307 Glyco_tran_WbsX: Glyc 21.1 1.5E+02 0.0033 25.2 4.2 43 93-136 157-199 (345)
No 1
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.9e-31 Score=197.18 Aligned_cols=148 Identities=45% Similarity=0.790 Sum_probs=134.7
Q ss_pred ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030 66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF 145 (215)
Q Consensus 66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~ 145 (215)
..+++|+++|||++++.+|+.++|++++||++||+|||..++|.|..++..|+++++++++.|.+|+|||.|+++.+++|
T Consensus 2 ~~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F 81 (157)
T COG1225 2 MMLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKF 81 (157)
T ss_pred CcCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEcCChhHHHHhCCCccC--CC---CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 146 AKKYRLPYTLLSDEGNKVRKEWGVPADF--FG---SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 146 ~~~~~~~~~~~~d~~~~~~~~~g~~~~~--~g---~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
+++++++|++++|+++++.++||+.... +| ..+.|.+||||++|+|++.| .......+.+++++.|++
T Consensus 82 ~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~~vl~~l~~ 154 (157)
T COG1225 82 AEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHADEVLAALKK 154 (157)
T ss_pred HHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCcccHHHHHHHHHH
Confidence 9999999999999999999999998642 22 13456999999999999999 445667788889988864
No 2
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.97 E-value=3.5e-29 Score=200.28 Aligned_cols=177 Identities=25% Similarity=0.356 Sum_probs=132.9
Q ss_pred cCCCccccccCccccccccCCC-CCCccccccccccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhH
Q 028030 33 SKSSSQSQFFGLRFSFSSNLPI-PSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCT 111 (215)
Q Consensus 33 s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~ 111 (215)
|..++.+++++.++++++.-.. ................|+.+|+|+++|.+|+.+++++++||++||+|| ++||++|.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~Fw-AswCp~c~ 115 (236)
T PLN02399 37 STGISKSAFLSNGFSLKSPNSPGFLSKSRSFGVYARAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNV-ASKCGLTS 115 (236)
T ss_pred ccccccchhhccccccccCCCccccccccccccccchhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEE-cCCCcchH
Confidence 3444688899999998865322 222223333344556899999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEeC--------CCHHHHHHHH-HHcCCCeEEEE--cCCh-hHHHHhCCC--------c
Q 028030 112 KQACAFRDSYEKFKKAGAEVIGISG--------DDSSSHKAFA-KKYRLPYTLLS--DEGN-KVRKEWGVP--------A 171 (215)
Q Consensus 112 ~~~~~l~~l~~~~~~~~v~vv~vs~--------d~~~~~~~~~-~~~~~~~~~~~--d~~~-~~~~~~g~~--------~ 171 (215)
.++|.|++++++|+++|++||+|+. ++.+++++|+ ++++++||++. |.++ .+...|++. +
T Consensus 116 ~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g 195 (236)
T PLN02399 116 SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLG 195 (236)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccC
Confidence 9999999999999999999999996 3567899998 68999999985 3333 344444321 1
Q ss_pred cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030 172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l 212 (215)
+.....| ++||||++|+|+.++.|..+.+...+.|.++|
T Consensus 196 ~~i~~~P--ttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 196 DLIKWNF--EKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred CccccCc--eEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 0011245 99999999999999999765443333333333
No 3
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.97 E-value=2.3e-29 Score=188.68 Aligned_cols=138 Identities=38% Similarity=0.653 Sum_probs=118.7
Q ss_pred CCCCCCCCeEEeC--CCCCeeecCCcCCCcEEEEEEcCC-CChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030 69 SKGQAPPSFTLKD--QEGRNVSLSKFKGKPVVVYFYPAD-ETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF 145 (215)
Q Consensus 69 ~~g~~~P~f~l~~--~~g~~~~l~~~~gk~~ll~f~~a~-~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~ 145 (215)
++|+++|+|++++ .+|+.+++++++||++||+|| ++ ||++|+.++|.|++++++|+++|+++++|+.++...+++|
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~-~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~ 79 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFW-ASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREF 79 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEE-STTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHH
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEE-ccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHH
Confidence 5799999999966 999999999999999999999 77 9999999999999999999999999999999877779999
Q ss_pred HHHcCCCeEEEEcCChhHHHHhCCCc--c-CCC-CCCccEEEEEcCCCcEEEEEeCCCCC-CccHHHHH
Q 028030 146 AKKYRLPYTLLSDEGNKVRKEWGVPA--D-FFG-SLPGRQTYILDKNGVVQLIYNNQFQP-EKHIDETL 209 (215)
Q Consensus 146 ~~~~~~~~~~~~d~~~~~~~~~g~~~--~-~~g-~~p~~~~~lid~~G~v~~~~~g~~~~-~~~~~~il 209 (215)
+++++.+|+++.|+++.+.+.|++.. . ..| .+| +++|||++|+|++.+.|.... .++++++|
T Consensus 80 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P--~~~lId~~G~V~~~~~g~~~~~~~~~~~~l 146 (146)
T PF08534_consen 80 LKKYGINFPVLSDPDGALAKALGVTIMEDPGNGFGIP--TTFLIDKDGKVVYRHVGPDPDEESDLEAVL 146 (146)
T ss_dssp HHHTTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSS--EEEEEETTSBEEEEEESSBTTSHHSHHHHH
T ss_pred HHhhCCCceEEechHHHHHHHhCCccccccccCCeec--EEEEEECCCEEEEEEeCCCCCCCCChhhcC
Confidence 99999999999999999999999871 0 111 277 999999999999999996553 34454443
No 4
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.97 E-value=6.6e-29 Score=187.97 Aligned_cols=146 Identities=39% Similarity=0.717 Sum_probs=128.8
Q ss_pred ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030 66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF 145 (215)
Q Consensus 66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~ 145 (215)
..+++|+.+|+|++++.+|+.+++++++||++||+||++.||+.|..+++.|++++++++++|+++|+|+.|+++++++|
T Consensus 2 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~ 81 (154)
T PRK09437 2 NPLKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRF 81 (154)
T ss_pred CcCCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 35688999999999999999999999999999999997778999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEcCChhHHHHhCCCccCC-------CCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 146 AKKYRLPYTLLSDEGNKVRKEWGVPADFF-------GSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 146 ~~~~~~~~~~~~d~~~~~~~~~g~~~~~~-------g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
+++++++|+++.|+.+.+.+.||+..... +..| ++||||++|+|++.+.|.. ..+..+++++.+++
T Consensus 82 ~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~--~~~lid~~G~i~~~~~g~~-~~~~~~~~~~~~~~ 154 (154)
T PRK09437 82 AEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHR--ISFLIDADGKIEHVFDKFK-TSNHHDVVLDYLKE 154 (154)
T ss_pred HHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcce--EEEEECCCCEEEEEEcCCC-cchhHHHHHHHHhC
Confidence 99999999999999999999999875210 1123 7899999999999998853 34557888888764
No 5
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.96 E-value=7.4e-29 Score=186.38 Aligned_cols=145 Identities=39% Similarity=0.673 Sum_probs=127.9
Q ss_pred CCCCCCCCCeEEeCCCCCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030 68 VSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA 146 (215)
Q Consensus 68 ~~~g~~~P~f~l~~~~g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~ 146 (215)
+++|+++|+|.+.+.+|+.+++++++| |++||+||+++||+.|..+++.|++++++++++|+++|+|+.|+++.+++|+
T Consensus 1 ~~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~ 80 (149)
T cd03018 1 LEVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWA 80 (149)
T ss_pred CCCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHH
Confidence 468999999999999999999999999 9999999989999999999999999999999889999999999999999999
Q ss_pred HHcCCCeEEEEcCC--hhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 147 KKYRLPYTLLSDEG--NKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 147 ~~~~~~~~~~~d~~--~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
++++++|+++.|.. +++.+.||+.....+ +|.+++||||++|+|++.+.|......+..++.+.|+
T Consensus 81 ~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~-~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 81 EENGLTFPLLSDFWPHGEVAKAYGVFDEDLG-VAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred HhcCCCceEecCCCchhHHHHHhCCccccCC-CccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 99999999999987 999999999853322 5667999999999999999986533444555555554
No 6
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.96 E-value=9e-29 Score=193.00 Aligned_cols=145 Identities=28% Similarity=0.456 Sum_probs=126.9
Q ss_pred CCCCCCCCeEEeC-CCCC--eeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030 69 SKGQAPPSFTLKD-QEGR--NVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF 145 (215)
Q Consensus 69 ~~g~~~P~f~l~~-~~g~--~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~ 145 (215)
.+|+.+|+|++.+ .+|+ .+++++++||++||+|||++||++|..+++.|++++++++++|++||+||.|+.+.+++|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~ 82 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAW 82 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHH
Confidence 4799999999998 5776 688889999999999999999999999999999999999999999999999999988888
Q ss_pred HHHc----CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 146 AKKY----RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 146 ~~~~----~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
.+.. +++|+++.|+++++.+.||+.....| ++.|.+||||++|+|++.+.+....+...+++++.|++
T Consensus 83 ~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g-~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 83 HDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAG-LADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred HhhhhhccCcceeEEECCccHHHHHhCCcccCCC-ceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 8754 68899999999999999999754333 33459999999999999987765666788999988753
No 7
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.96 E-value=3.3e-28 Score=187.67 Aligned_cols=144 Identities=37% Similarity=0.631 Sum_probs=126.1
Q ss_pred CCCCCCCeEEeCCCC----CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030 70 KGQAPPSFTLKDQEG----RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF 145 (215)
Q Consensus 70 ~g~~~P~f~l~~~~g----~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~ 145 (215)
+|+++|+|++.+.+| +.+++++++||++||+||+++||+.|..+++.|++++++|.++|+++++|+.|+.+..++|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~ 80 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAW 80 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHH
Confidence 589999999999887 7899999999999999999999999999999999999999999999999999998877788
Q ss_pred HHH-------cCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 146 AKK-------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 146 ~~~-------~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
.+. .+++|+++.|+.+++.+.||+.....+ .+.|++||||++|+|++.+.+....+...+++++.|++
T Consensus 81 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~-~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 81 RNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEG-VALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred HHhhhhhCCccCcceeEEECCchhHHHHhCCccccCC-ceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 775 458899999999999999999753322 33449999999999999998765556677888888764
No 8
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.96 E-value=3.8e-28 Score=188.77 Aligned_cols=146 Identities=23% Similarity=0.375 Sum_probs=128.2
Q ss_pred CCCCCCCCCeEEeC---CCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030 68 VSKGQAPPSFTLKD---QEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA 144 (215)
Q Consensus 68 ~~~g~~~P~f~l~~---~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~ 144 (215)
..+|+++|+|+... -+...++|++++||++||+|||++||+.|..+++.|++++++++++|++|++||.|+.+.+++
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a 81 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA 81 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 46899999999875 344667888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH----cCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 145 FAKK----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 145 ~~~~----~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
|.+. .+++||++.|+++.+.+.||+.....| ++.|.+||||++|+|++.+........+.+++++.|++
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g-~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 82 WHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred HHHhhccccCCceeEEEcCchHHHHHcCCCcccCC-ceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 9976 378999999999999999999643323 54459999999999999988766677789999998864
No 9
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.96 E-value=5.2e-28 Score=192.02 Aligned_cols=146 Identities=27% Similarity=0.446 Sum_probs=125.7
Q ss_pred CCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH-
Q 028030 69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK- 147 (215)
Q Consensus 69 ~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~- 147 (215)
.+|+++|+|++.+.+|+...+++++||++||+|++++||++|..+++.|++++++|+++|+++|+||.|+.+.+++|.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~ 82 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEW 82 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHh
Confidence 5899999999999999988888999999877676799999999999999999999999999999999999988777765
Q ss_pred -----HcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 148 -----KYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 148 -----~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
..+++||++.|.++++++.||+.....+..+.|.+||||++|+|++.+........+++++++.|++
T Consensus 83 i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 83 IKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred HHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 3478899999999999999999643323223449999999999999987655667889999998863
No 10
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.96 E-value=2.6e-28 Score=177.68 Aligned_cols=123 Identities=37% Similarity=0.743 Sum_probs=113.2
Q ss_pred CCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHc
Q 028030 70 KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKY 149 (215)
Q Consensus 70 ~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~ 149 (215)
+|+++|+|++++.+|+.+++++++||++||+||+..||+.|..+++.|++++++|+++|+++++|+.|+.+++++|.+.+
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 80 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY 80 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhh
Confidence 69999999999999999999999999999999955599999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEcCChhHHHHhCCCccC-CCCCCccEEEEEcCCCcEEEE
Q 028030 150 RLPYTLLSDEGNKVRKEWGVPADF-FGSLPGRQTYILDKNGVVQLI 194 (215)
Q Consensus 150 ~~~~~~~~d~~~~~~~~~g~~~~~-~g~~p~~~~~lid~~G~v~~~ 194 (215)
+++|+++.|.++++.+.||+.... ...+| .+||||++|+|+++
T Consensus 81 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p--~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 81 GLPFPVLSDPDGELAKAFGIEDEKDTLALP--AVFLIDPDGKIRYA 124 (124)
T ss_dssp TCSSEEEEETTSHHHHHTTCEETTTSEESE--EEEEEETTSBEEEE
T ss_pred ccccccccCcchHHHHHcCCccccCCceEe--EEEEECCCCEEEeC
Confidence 999999999999999999998321 11256 99999999999974
No 11
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.96 E-value=9.8e-28 Score=183.94 Aligned_cols=147 Identities=27% Similarity=0.370 Sum_probs=126.4
Q ss_pred ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030 66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF 145 (215)
Q Consensus 66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~ 145 (215)
..+.+|+++|+|++.+.+|+.+++++++||++||+||++.||++|..+++.|+++++++. |++|++||.|+++.+++|
T Consensus 16 ~~~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~~~~f 93 (167)
T PRK00522 16 SLPQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFAQKRF 93 (167)
T ss_pred CCCCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHHHHHH
Confidence 345789999999999999999999999999999999944449999999999999999983 899999999999999999
Q ss_pred HHHcCCC-eEEEEc-CChhHHHHhCCCccC--CCCCCccEEEEEcCCCcEEEEEeC-CCCCCccHHHHHHHHhc
Q 028030 146 AKKYRLP-YTLLSD-EGNKVRKEWGVPADF--FGSLPGRQTYILDKNGVVQLIYNN-QFQPEKHIDETLKFLQS 214 (215)
Q Consensus 146 ~~~~~~~-~~~~~d-~~~~~~~~~g~~~~~--~g~~p~~~~~lid~~G~v~~~~~g-~~~~~~~~~~il~~l~~ 214 (215)
+++++++ ++++.| .++.+.+.||+.... ...++.|++||||++|+|++.+.+ .......+++++++|++
T Consensus 94 ~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~~ 167 (167)
T PRK00522 94 CGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALKA 167 (167)
T ss_pred HHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhhC
Confidence 9999997 789999 456999999997532 122456799999999999999975 34555789999999874
No 12
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.96 E-value=8.6e-28 Score=190.87 Aligned_cols=147 Identities=29% Similarity=0.508 Sum_probs=126.1
Q ss_pred cCCCCCCCCCeEEeCCCCCeeec-CCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030 67 KVSKGQAPPSFTLKDQEGRNVSL-SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF 145 (215)
Q Consensus 67 ~~~~g~~~P~f~l~~~~g~~~~l-~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~ 145 (215)
.+.+|+++|+|++.+.+|+ +.+ ++++||++||+||+++||+.|..+++.|++++++|+++|++|++||+|+.+.+++|
T Consensus 6 ~~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw 84 (215)
T PRK13191 6 IPLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEW 84 (215)
T ss_pred cccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence 4568999999999999997 455 55799999987777999999999999999999999999999999999999887777
Q ss_pred HH------HcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 146 AK------KYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 146 ~~------~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
.+ ..+++||++.|.++++.+.||+.....+..+.|.+||||++|+|++.+.+......+++++|+.|++
T Consensus 85 ~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 85 VMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred HhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 64 2468899999999999999999753221233459999999999999988877778899999998863
No 13
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.96 E-value=4.7e-28 Score=180.09 Aligned_cols=135 Identities=50% Similarity=0.896 Sum_probs=121.6
Q ss_pred CCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCC
Q 028030 72 QAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRL 151 (215)
Q Consensus 72 ~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~ 151 (215)
+++|+|+++|.+|+.+++++++||++||+||+++||+.|..+++.|++++++++++|+++|+|+.|+++.+++|++++++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 80 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGL 80 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence 47899999999999999999999999999998899999999999999999999998999999999999999999999999
Q ss_pred CeEEEEcCChhHHHHhCCCccC----CCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHH
Q 028030 152 PYTLLSDEGNKVRKEWGVPADF----FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETL 209 (215)
Q Consensus 152 ~~~~~~d~~~~~~~~~g~~~~~----~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il 209 (215)
+|+++.|.++++.+.||+.... .+..| ++||||++|+|++.+.|.. .+..+++++
T Consensus 81 ~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p--~~~lid~~G~v~~~~~g~~-~~~~~~~~~ 139 (140)
T cd03017 81 PFPLLSDPDGKLAKAYGVWGEKKKKYMGIER--STFLIDPDGKIVKVWRKVK-PKGHAEEVL 139 (140)
T ss_pred CceEEECCccHHHHHhCCccccccccCCcce--eEEEECCCCEEEEEEecCC-ccchHHHHh
Confidence 9999999999999999998621 11125 9999999999999998865 566677765
No 14
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.96 E-value=1.6e-27 Score=188.04 Aligned_cols=145 Identities=33% Similarity=0.610 Sum_probs=124.7
Q ss_pred CCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH
Q 028030 68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK 147 (215)
Q Consensus 68 ~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~ 147 (215)
+.+|+.+|+|++.+.+| .+++++++||++||+||+++||++|..+++.|++++++++++|++||+||.|+.+.+++|++
T Consensus 2 ~~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~ 80 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLR 80 (202)
T ss_pred CCCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 57899999999999888 69999999999888766699999999999999999999999999999999999988777765
Q ss_pred ----HcC--CCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 148 ----KYR--LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 148 ----~~~--~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
+++ ++||++.|+++++++.||+.....| .+.|.+||||++|+|++...+......+++++++.|+.
T Consensus 81 ~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g-~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~ 152 (202)
T PRK13190 81 DIEERFGIKIPFPVIADIDKELAREYNLIDENSG-ATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKA 152 (202)
T ss_pred hHHHhcCCCceEEEEECCChHHHHHcCCccccCC-cEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 455 5799999999999999999654333 23349999999999999887666666788999988764
No 15
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.95 E-value=2.7e-27 Score=191.72 Aligned_cols=147 Identities=29% Similarity=0.466 Sum_probs=128.8
Q ss_pred ccCCCCCCCCCeEEeC-CCC--CeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHH
Q 028030 66 AKVSKGQAPPSFTLKD-QEG--RNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSS 141 (215)
Q Consensus 66 ~~~~~g~~~P~f~l~~-~~g--~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~ 141 (215)
..+.+|+++|+|++.+ .+| +.++++++ +||++||+||+++||++|..+++.|++++++++++|++|++||.|+++.
T Consensus 66 ~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~ 145 (261)
T PTZ00137 66 TSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFS 145 (261)
T ss_pred ccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 4557999999999987 455 46899998 8999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH-------cCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 142 HKAFAKK-------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 142 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
+++|.+. .+++||++.|.+++++++||+.... | .+.|.+||||++|+|++.+........+++++++.|+.
T Consensus 146 h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~-g-~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 146 HKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDE-G-FSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred HHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcC-C-ceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 8888864 5788999999999999999997532 2 33449999999999999997777778899999998863
No 16
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.95 E-value=2.6e-27 Score=177.00 Aligned_cols=139 Identities=29% Similarity=0.420 Sum_probs=120.4
Q ss_pred CCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030 69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK 148 (215)
Q Consensus 69 ~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~ 148 (215)
++|+++|+|++.+.+|+.+++++++||++||+||++.||++|+.+++.|++++++++ |+.||+|+.|+.+.+++|.++
T Consensus 1 ~~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~~~~ 78 (143)
T cd03014 1 KVGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWCGA 78 (143)
T ss_pred CCCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHHHHh
Confidence 368999999999999999999999999999999955558999999999999999984 899999999999999999999
Q ss_pred cCC-CeEEEEcCC-hhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCC-CCCCccHHHHHH
Q 028030 149 YRL-PYTLLSDEG-NKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ-FQPEKHIDETLK 210 (215)
Q Consensus 149 ~~~-~~~~~~d~~-~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~-~~~~~~~~~il~ 210 (215)
++. +|+++.|.. +++.+.||+..+..| ++.|++||||++|+|++.+.|. .....+++++++
T Consensus 79 ~~~~~~~~l~D~~~~~~~~~~gv~~~~~~-~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~ 142 (143)
T cd03014 79 EGVDNVTTLSDFRDHSFGKAYGVLIKDLG-LLARAVFVIDENGKVIYVELVPEITDEPDYEAALA 142 (143)
T ss_pred cCCCCceEeecCcccHHHHHhCCeeccCC-ccceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence 997 799999986 999999999754333 3345999999999999999874 344567777764
No 17
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-27 Score=174.49 Aligned_cols=204 Identities=58% Similarity=0.914 Sum_probs=177.9
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCceecccCCCccccccCccccccccCCCCCCccccccccccCCCCCCCCCeEEeCCC
Q 028030 4 SLNLPKHTLPSFLPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTSFKTSISAKVSKGQAPPSFTLKDQE 83 (215)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~P~f~l~~~~ 83 (215)
..+.|.|+..-.++.++++.+.+.+ .++.++ +.+.|++..+.........++. .-.+++|+.+|||+|.|.|
T Consensus 7 rstr~a~t~~~~l~~~~tlvp~t~p-~vpkK~-~ks~~~~~~~~~~~~~s~~Ssd------s~~v~~Gd~iPD~tL~ded 78 (211)
T KOG0855|consen 7 RSTRCAHTTLRTLPLRKTLVPKTQP-SVPKKS-SKSNFFGSTLTHSSYISPVSSD------SLKVNKGDAIPDFTLKDED 78 (211)
T ss_pred chhhhHhhhhhcccccccccccccc-cccccc-cccCcccccccceeeecccccc------ceeeecCCcCCCcccccCC
Confidence 3466778888899999998877764 455555 6788998877766555444222 1378899999999999999
Q ss_pred CCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChh
Q 028030 84 GRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNK 162 (215)
Q Consensus 84 g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~ 162 (215)
|+.++|.++.| |++|++|||+...|.|.++...|+..|+++++.+.+|+|++.|+....++|..+++++|.++.|+.++
T Consensus 79 g~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e 158 (211)
T KOG0855|consen 79 GKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNE 158 (211)
T ss_pred CCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhccCCeeeecCcchh
Confidence 99999999976 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhcC
Q 028030 163 VRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQSS 215 (215)
Q Consensus 163 ~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~s 215 (215)
+.+.+|+..+.+|..|.+..|++|++|........++.++..+++.++.|.++
T Consensus 159 ~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~~~ 211 (211)
T KOG0855|consen 159 VIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLKAA 211 (211)
T ss_pred HHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHHHHHHHhcC
Confidence 99999999999999999999999999888888888889999999999988753
No 18
>PRK15000 peroxidase; Provisional
Probab=99.95 E-value=4.4e-27 Score=185.02 Aligned_cols=145 Identities=28% Similarity=0.520 Sum_probs=124.3
Q ss_pred CCCCCCCCeEEeCCC--CCe---eecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHH
Q 028030 69 SKGQAPPSFTLKDQE--GRN---VSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH 142 (215)
Q Consensus 69 ~~g~~~P~f~l~~~~--g~~---~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~ 142 (215)
.+|+++|+|++.+.. |+. .+++++ +||++||+||+++||+.|..+++.|++++++|+++|++||+||.|+.+.+
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~ 82 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVH 82 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 479999999999863 453 455665 89999999998899999999999999999999999999999999999888
Q ss_pred HHHHHH----cC---CCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 143 KAFAKK----YR---LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 143 ~~~~~~----~~---~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
+.|.+. .+ ++||++.|.++++.+.||+.....| ++.|.+||||++|+|++.+.+......+++++|+.|+.
T Consensus 83 ~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g-~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 83 NAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEG-VALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCC-cEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 888654 33 6899999999999999999754333 23449999999999999999988888899999998863
No 19
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.95 E-value=4.5e-27 Score=185.64 Aligned_cols=144 Identities=26% Similarity=0.474 Sum_probs=124.3
Q ss_pred CCCCCCCeEEeCCCCCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030 70 KGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK 148 (215)
Q Consensus 70 ~g~~~P~f~l~~~~g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~ 148 (215)
+|+.+|+|++.+.+|. +++++++| |++||+|++++||+.|..+++.|++++++++++|++|++||.|+.+.+++|.+.
T Consensus 1 vG~~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~ 79 (203)
T cd03016 1 LGDTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIED 79 (203)
T ss_pred CcCCCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhh
Confidence 5899999999999985 89999988 787776666999999999999999999999999999999999999888888775
Q ss_pred ------cCCCeEEEEcCChhHHHHhCCCccCCC-CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 149 ------YRLPYTLLSDEGNKVRKEWGVPADFFG-SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 149 ------~~~~~~~~~d~~~~~~~~~g~~~~~~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
.+++||++.|+++.+++.||+.....+ ..+.|.+||||++|+|++.+.+......+++++++.|++
T Consensus 80 i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~ 152 (203)
T cd03016 80 IEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA 152 (203)
T ss_pred HHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 689999999999999999999743211 123458999999999999998877777788899888764
No 20
>PRK13189 peroxiredoxin; Provisional
Probab=99.95 E-value=1.3e-26 Score=184.99 Aligned_cols=147 Identities=27% Similarity=0.488 Sum_probs=126.1
Q ss_pred cCCCCCCCCCeEEeCCCCCeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030 67 KVSKGQAPPSFTLKDQEGRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF 145 (215)
Q Consensus 67 ~~~~g~~~P~f~l~~~~g~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~ 145 (215)
.+.+|+.+|+|++.+.+|+ ++++++ +||++||+||+++||+.|..+++.|++++++|+++|++||+||.|+.+.+++|
T Consensus 8 ~~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw 86 (222)
T PRK13189 8 MPLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKW 86 (222)
T ss_pred cccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence 4678999999999999996 677774 99998887777999999999999999999999999999999999999988888
Q ss_pred HHH------cCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 146 AKK------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 146 ~~~------~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
++. .+++||++.|.++++++.||+.....+....|.+||||++|+|++.+.+......+.+++++.|++
T Consensus 87 ~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 161 (222)
T PRK13189 87 VEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKA 161 (222)
T ss_pred HHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 874 357899999999999999999743322123349999999999999988777777888999988863
No 21
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.95 E-value=7.7e-27 Score=183.53 Aligned_cols=143 Identities=15% Similarity=0.237 Sum_probs=112.7
Q ss_pred CCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--------CCH
Q 028030 68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--------DDS 139 (215)
Q Consensus 68 ~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--------d~~ 139 (215)
-..|..+|+|+++|.+|+.+++++++||++||+|| ++||++|..++|.|++++++|+++|++||+|+. |+.
T Consensus 13 ~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 13 DELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCH
Confidence 35678999999999999999999999999999999 999999999999999999999999999999986 567
Q ss_pred HHHHHHHHHcCCCeEEEEcC------ChhHHH--------HhCCCccCCCCCC-ccEEEEEcCCCcEEEEEeCCCCCCcc
Q 028030 140 SSHKAFAKKYRLPYTLLSDE------GNKVRK--------EWGVPADFFGSLP-GRQTYILDKNGVVQLIYNNQFQPEKH 204 (215)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~d~------~~~~~~--------~~g~~~~~~g~~p-~~~~~lid~~G~v~~~~~g~~~~~~~ 204 (215)
+++++|+++++++|+++.|. ...+.+ .|+..+...+ ++ .+++||||++|+|+.++.|..+.+..
T Consensus 92 e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~-i~~~~~tflID~~G~iv~~~~g~~~~~~l 170 (199)
T PTZ00056 92 KDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKA-IGWNFGKFLVNKSGNVVAYFSPRTEPLEL 170 (199)
T ss_pred HHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCc-cCCCCEEEEECCCCcEEEEeCCCCCHHHH
Confidence 89999999999999998752 223332 2333221111 22 24799999999999999886654443
Q ss_pred HHHHHHHH
Q 028030 205 IDETLKFL 212 (215)
Q Consensus 205 ~~~il~~l 212 (215)
.+.+.+++
T Consensus 171 ~~~I~~ll 178 (199)
T PTZ00056 171 EKKIAELL 178 (199)
T ss_pred HHHHHHHH
Confidence 33344433
No 22
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.95 E-value=1.3e-26 Score=182.49 Aligned_cols=147 Identities=27% Similarity=0.488 Sum_probs=127.6
Q ss_pred cCCCCCCCCCeEEeC----CCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHH
Q 028030 67 KVSKGQAPPSFTLKD----QEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH 142 (215)
Q Consensus 67 ~~~~g~~~P~f~l~~----~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~ 142 (215)
.+.+|+++|+|++.+ .+|+++++++++||++||+||+++||+.|..+++.|++++++|+++|++||+||.|+.+..
T Consensus 5 ~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~ 84 (199)
T PTZ00253 5 DAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAH 84 (199)
T ss_pred ccccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH
Confidence 357899999999765 5678999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 143 KAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 143 ~~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
.+|.... +++||++.|+++++.+.||+.....| ++.|.+||||++|+|+..+.+......+++++++.|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g-~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 85 LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQG-VAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCC-ceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 7775421 47899999999999999999754333 33449999999999999998877778899999998864
No 23
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.94 E-value=3.9e-26 Score=169.68 Aligned_cols=135 Identities=44% Similarity=0.734 Sum_probs=118.8
Q ss_pred CCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHc-CC
Q 028030 73 APPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKY-RL 151 (215)
Q Consensus 73 ~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~-~~ 151 (215)
.+|+|++.|.+|+.+++++++||++||+||++.||+.|..+++.|+++++++++.++++|+|+.|+++.+++|++++ +.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~ 80 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGL 80 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCC
Confidence 47999999999999999999999999999989999999999999999999998889999999999999999999999 99
Q ss_pred CeEEEEcCChhHHHHhCCCccCC--CCCCccEEEEEcCCCcEEEEEeCCCCCCccHHH
Q 028030 152 PYTLLSDEGNKVRKEWGVPADFF--GSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDE 207 (215)
Q Consensus 152 ~~~~~~d~~~~~~~~~g~~~~~~--g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~ 207 (215)
+|+++.|+++.+.+.||+..... +..+.|++||||++|+|++.+.+........+.
T Consensus 81 ~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~~~~~~~~ 138 (140)
T cd02971 81 NFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLPTGRNAEE 138 (140)
T ss_pred CceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCCCCcChHh
Confidence 99999999999999999986321 112344899999999999999987654444443
No 24
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.94 E-value=1.2e-26 Score=175.40 Aligned_cols=127 Identities=24% Similarity=0.342 Sum_probs=103.9
Q ss_pred CCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--------CCHHHHHHH
Q 028030 74 PPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--------DDSSSHKAF 145 (215)
Q Consensus 74 ~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--------d~~~~~~~~ 145 (215)
+.+|++.|.+|+.+++++++||++||+|| ++||++|..++|.|++++++|+++|+.|++|+. |+.+.+++|
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f 80 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESF 80 (153)
T ss_pred cccceeECCCCCEecHHHhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHH
Confidence 46899999999999999999999999999 999999999999999999999999999999984 667899999
Q ss_pred HHH-cCCCeEEEEc---CChhHH--HHhCCCccCCCCCC--ccEEEEEcCCCcEEEEEeCCCCCCc
Q 028030 146 AKK-YRLPYTLLSD---EGNKVR--KEWGVPADFFGSLP--GRQTYILDKNGVVQLIYNNQFQPEK 203 (215)
Q Consensus 146 ~~~-~~~~~~~~~d---~~~~~~--~~~g~~~~~~g~~p--~~~~~lid~~G~v~~~~~g~~~~~~ 203 (215)
+++ ++++||++.| .+.... ..|.+.. .+.+| ++++||||++|+|+..+.|..+.+.
T Consensus 81 ~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~--~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~ 144 (153)
T TIGR02540 81 ARRNYGVTFPMFSKIKILGSEAEPAFRFLVDS--SKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEE 144 (153)
T ss_pred HHHhcCCCCCccceEecCCCCCCcHHHHHHhc--CCCCCCCccEEEEEcCCCcEEEEECCCCCHHH
Confidence 986 8999999876 222222 2333221 12255 3349999999999999999765443
No 25
>PLN02412 probable glutathione peroxidase
Probab=99.94 E-value=4.4e-26 Score=174.79 Aligned_cols=141 Identities=19% Similarity=0.314 Sum_probs=110.8
Q ss_pred CCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHHHHH
Q 028030 72 QAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSSSHK 143 (215)
Q Consensus 72 ~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~~~~ 143 (215)
..+|+|+++|.+|+.+++++++||++||+|| ++||++|+.+++.|++++++|+++|++||+|+.| +.+++.
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHH
Confidence 7899999999999999999999999999999 9999999999999999999999999999999863 455655
Q ss_pred HH-HHHcCCCeEEEEc--CC-hhHHHHhCCCcc----CCC--CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 144 AF-AKKYRLPYTLLSD--EG-NKVRKEWGVPAD----FFG--SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 144 ~~-~~~~~~~~~~~~d--~~-~~~~~~~g~~~~----~~g--~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
++ +++++++||++.| .+ ......|++... ..+ ....|++||||++|+|+..+.|..+.+.....+.++|+
T Consensus 86 ~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 86 QTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred HHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 54 6899999999863 44 355555542210 111 11134999999999999999998765544444545444
No 26
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.94 E-value=1.8e-26 Score=174.38 Aligned_cols=122 Identities=24% Similarity=0.418 Sum_probs=102.6
Q ss_pred CCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHHHHHHH
Q 028030 74 PPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSSSHKAF 145 (215)
Q Consensus 74 ~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~~~~~~ 145 (215)
+|+|++.|.+|+.+++++++||++||+|| ++||+ |..++|.|++++++|+++|++||+|+.| +.+.+++|
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHH
Confidence 79999999999999999999999999999 99999 9999999999999999889999999863 46889999
Q ss_pred HHH-cCCCeEEEEcC--Chh-HHHHhCCCccCCCCCC---------ccEEEEEcCCCcEEEEEeCCCC
Q 028030 146 AKK-YRLPYTLLSDE--GNK-VRKEWGVPADFFGSLP---------GRQTYILDKNGVVQLIYNNQFQ 200 (215)
Q Consensus 146 ~~~-~~~~~~~~~d~--~~~-~~~~~g~~~~~~g~~p---------~~~~~lid~~G~v~~~~~g~~~ 200 (215)
+++ ++++||++.|. ++. ....|++... .+| .+++||||++|+|++++.|..+
T Consensus 80 ~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~ 144 (152)
T cd00340 80 CETNYGVTFPMFAKIDVNGENAHPLYKYLKE---EAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTD 144 (152)
T ss_pred HHHhcCCCceeeeeEeccCCCCChHHHHHHh---cCCCCCCCccccccEEEEECCCCcEEEEECCCCC
Confidence 987 89999999763 333 4555553110 022 3489999999999999999753
No 27
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.94 E-value=7.2e-26 Score=176.09 Aligned_cols=143 Identities=20% Similarity=0.363 Sum_probs=109.9
Q ss_pred CCCCCCCeEEeCCCCCeeecCCcCCCcE-EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHH
Q 028030 70 KGQAPPSFTLKDQEGRNVSLSKFKGKPV-VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSS 140 (215)
Q Consensus 70 ~g~~~P~f~l~~~~g~~~~l~~~~gk~~-ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~ 140 (215)
.++.+|+|+++|.+|+.+++++++||++ |++|| ++||++|+.++|.|++++++|+++|+.||+|+.| +.+
T Consensus 16 ~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 16 PTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHH
Confidence 3578999999999999999999999965 45678 9999999999999999999999999999999864 357
Q ss_pred HHHHHHH-HcCCCeEEEEc--CChhH-HHHhC----------CCccCCCCCC-ccEEEEEcCCCcEEEEEeCCCCCCccH
Q 028030 141 SHKAFAK-KYRLPYTLLSD--EGNKV-RKEWG----------VPADFFGSLP-GRQTYILDKNGVVQLIYNNQFQPEKHI 205 (215)
Q Consensus 141 ~~~~~~~-~~~~~~~~~~d--~~~~~-~~~~g----------~~~~~~g~~p-~~~~~lid~~G~v~~~~~g~~~~~~~~ 205 (215)
++++|++ +++++||++.| .++.. ...|+ ........+| ++++||||++|+|+..+.|..+.+...
T Consensus 95 ~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~ 174 (183)
T PTZ00256 95 EIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMI 174 (183)
T ss_pred HHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHH
Confidence 8888875 78999999854 33332 22221 1000011267 446899999999999999977665555
Q ss_pred HHHHHHHh
Q 028030 206 DETLKFLQ 213 (215)
Q Consensus 206 ~~il~~l~ 213 (215)
+.|.++|+
T Consensus 175 ~~I~~ll~ 182 (183)
T PTZ00256 175 QDIEKLLN 182 (183)
T ss_pred HHHHHHhc
Confidence 66666554
No 28
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.93 E-value=6.2e-25 Score=168.97 Aligned_cols=139 Identities=31% Similarity=0.619 Sum_probs=125.7
Q ss_pred ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-HHHHHH
Q 028030 66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-SSSHKA 144 (215)
Q Consensus 66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-~~~~~~ 144 (215)
..+++|..+|+|++.+.+|+.+++++++||+++|+|| ++||+.|+.+++.|++++++++++++++++|+.|+ .+++++
T Consensus 33 ~~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~ 111 (173)
T PRK03147 33 EKVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKN 111 (173)
T ss_pred cccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHH
Confidence 5678999999999999999999999999999999999 99999999999999999999998889999999875 578999
Q ss_pred HHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 145 FAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 145 ~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
|+++++++|+++.|+++.+.+.||+.. +| ++|+||++|+|+..+.|... ++.+.+.++.++
T Consensus 112 ~~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~g~i~~~~~g~~~-~~~l~~~l~~~~ 172 (173)
T PRK03147 112 FVNRYGLTFPVAIDKGRQVIDAYGVGP-----LP--TTFLIDKDGKVVKVITGEMT-EEQLEEYLEKIK 172 (173)
T ss_pred HHHHhCCCceEEECCcchHHHHcCCCC-----cC--eEEEECCCCcEEEEEeCCCC-HHHHHHHHHHhc
Confidence 999999999999999999999999986 88 99999999999999888653 344666666654
No 29
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.93 E-value=2.5e-25 Score=173.36 Aligned_cols=130 Identities=24% Similarity=0.454 Sum_probs=110.9
Q ss_pred cCCCCCCCCCeEEeCCC--CCeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHH
Q 028030 67 KVSKGQAPPSFTLKDQE--GRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSH 142 (215)
Q Consensus 67 ~~~~g~~~P~f~l~~~~--g~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~ 142 (215)
...+|+++|+|++.|.+ |+.++++++ +||++||+|| ++||++|+.++|.|.++++ +|++|++|+.| +.+++
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKDDRQKA 112 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHH----cCCEEEEEECCCCHHHH
Confidence 45689999999999988 477777766 7999999999 9999999999999988753 48999999974 56889
Q ss_pred HHHHHHcCCCeEE-EEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHH
Q 028030 143 KAFAKKYRLPYTL-LSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETL 209 (215)
Q Consensus 143 ~~~~~~~~~~~~~-~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il 209 (215)
++|+++++++|++ +.|+++.+...||+.. +| ++|+||++|+|++.+.|..+.+ .+++.+
T Consensus 113 ~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~-----~P--~t~vid~~G~i~~~~~G~~~~~-~l~~~i 172 (185)
T PRK15412 113 ISWLKELGNPYALSLFDGDGMLGLDLGVYG-----AP--ETFLIDGNGIIRYRHAGDLNPR-VWESEI 172 (185)
T ss_pred HHHHHHcCCCCceEEEcCCccHHHhcCCCc-----CC--eEEEECCCceEEEEEecCCCHH-HHHHHH
Confidence 9999999999985 7799999999999987 88 9999999999999999976443 344433
No 30
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.9e-25 Score=167.89 Aligned_cols=146 Identities=35% Similarity=0.606 Sum_probs=132.2
Q ss_pred CCCCCCCCCeEEeCC-CCC---eeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHH
Q 028030 68 VSKGQAPPSFTLKDQ-EGR---NVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK 143 (215)
Q Consensus 68 ~~~g~~~P~f~l~~~-~g~---~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~ 143 (215)
..+|+++|+|+.+.. .|. +++++++.|||++|+|||+++.+.|..++..+++++++++++|++||+||+|+.+.+.
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~ 82 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHK 82 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHH
Confidence 458999999999987 774 8999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHH----cC---CCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 144 AFAKK----YR---LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 144 ~~~~~----~~---~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
+|.+. .+ ++||++.|.++++++.||+.....| ..-|.+||||++|+|+...........+++++|+.|+.
T Consensus 83 aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g-~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idA 159 (194)
T COG0450 83 AWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEG-LALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDA 159 (194)
T ss_pred HHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCC-cceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence 99975 45 6799999999999999999975555 24459999999999999988887888999999998874
No 31
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.93 E-value=5.2e-25 Score=165.08 Aligned_cols=125 Identities=23% Similarity=0.420 Sum_probs=110.1
Q ss_pred CCCCeEEeCCCCCeeecCCcC-CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCC
Q 028030 73 APPSFTLKDQEGRNVSLSKFK-GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRL 151 (215)
Q Consensus 73 ~~P~f~l~~~~g~~~~l~~~~-gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~ 151 (215)
.+|+|+++|.+|+.++++++. +|++||+||+++||++|+.+++.|++++++++++|+++|+|+.|+.+...+|.+++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 479999999999999999874 5888888877999999999999999999999988999999999999888899999999
Q ss_pred CeEEEEcCChhHHHHhCCCccCC----------------------CCCCccEEEEEcCCCcEEEEEeC
Q 028030 152 PYTLLSDEGNKVRKEWGVPADFF----------------------GSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 152 ~~~~~~d~~~~~~~~~g~~~~~~----------------------g~~p~~~~~lid~~G~v~~~~~g 197 (215)
+|+++.|+++.+++.||+..... ...+.|.+||||++|+|++.+.+
T Consensus 81 ~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 81 PFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred CCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 99999999999999999963221 11233499999999999998876
No 32
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.93 E-value=7.7e-25 Score=165.84 Aligned_cols=130 Identities=30% Similarity=0.451 Sum_probs=116.8
Q ss_pred CCCCCCCeEEeCCC---CCeeecCC-cCCCcEEEEEEcCCCChhhHHH-HHHHHHHHHHHHHcCc-EEEEEeCCCHHHHH
Q 028030 70 KGQAPPSFTLKDQE---GRNVSLSK-FKGKPVVVYFYPADETPGCTKQ-ACAFRDSYEKFKKAGA-EVIGISGDDSSSHK 143 (215)
Q Consensus 70 ~g~~~P~f~l~~~~---g~~~~l~~-~~gk~~ll~f~~a~~C~~C~~~-~~~l~~l~~~~~~~~v-~vv~vs~d~~~~~~ 143 (215)
+|+++|+|++.+.+ |+.++|++ ++||++||+|||+.||+.|..+ ++.|++.++++++.|+ +|++||.|+++.++
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence 58999999999985 99999999 5999999999999999999999 9999999999999999 69999999999999
Q ss_pred HHHHHcCC--CeEEEEcCChhHHHHhCCCccCC--C--CCCccEEEEEcCCCcEEEEEeCCCC
Q 028030 144 AFAKKYRL--PYTLLSDEGNKVRKEWGVPADFF--G--SLPGRQTYILDKNGVVQLIYNNQFQ 200 (215)
Q Consensus 144 ~~~~~~~~--~~~~~~d~~~~~~~~~g~~~~~~--g--~~p~~~~~lid~~G~v~~~~~g~~~ 200 (215)
+|++++++ +|++++|.++++.+.||+..... | ..+.|.+|||| +|+|++.+.....
T Consensus 81 ~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~ 142 (155)
T cd03013 81 AWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDP 142 (155)
T ss_pred HHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCC
Confidence 99999998 89999999999999999975432 2 23567999999 7999999876543
No 33
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.93 E-value=1.2e-24 Score=170.09 Aligned_cols=134 Identities=22% Similarity=0.349 Sum_probs=115.4
Q ss_pred cCCCCCCCCCeEEeCCCCCeeecC--CcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030 67 KVSKGQAPPSFTLKDQEGRNVSLS--KFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA 144 (215)
Q Consensus 67 ~~~~g~~~P~f~l~~~~g~~~~l~--~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~ 144 (215)
.+.+|+.+|+|+++|.+|+.++++ +++||+++|+|| ++||++|+.++|.+.+++++ .++++++|+.|+++++++
T Consensus 45 ~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~~~~ 120 (189)
T TIGR02661 45 GPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAEHRR 120 (189)
T ss_pred CCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHHHH
Confidence 468999999999999999999995 469999999999 99999999999999998754 368899999889999999
Q ss_pred HHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 145 FAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 145 ~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
|+++++++++.+. ..+++.+.|++.. +| ++|+||++|+|++. +.....+.++++++.+++
T Consensus 121 ~~~~~~~~~~~~~-~~~~i~~~y~v~~-----~P--~~~lID~~G~I~~~--g~~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 121 FLKDHELGGERYV-VSAEIGMAFQVGK-----IP--YGVLLDQDGKIRAK--GLTNTREHLESLLEADRE 180 (189)
T ss_pred HHHhcCCCcceee-chhHHHHhccCCc-----cc--eEEEECCCCeEEEc--cCCCCHHHHHHHHHHHHc
Confidence 9999999876544 4678999999986 88 99999999999976 434455678888887764
No 34
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.93 E-value=1.7e-24 Score=166.53 Aligned_cols=117 Identities=27% Similarity=0.503 Sum_probs=110.4
Q ss_pred CCCCCCeEEeCCCCCeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHHH
Q 028030 71 GQAPPSFTLKDQEGRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSSS 141 (215)
Q Consensus 71 g~~~P~f~l~~~~g~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~~ 141 (215)
|+++|+|++.+.+|+.++++++ +||++||+|| ++||+.|..+++.|++++++++++++++|+|+.| +.+.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~ 79 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPEN 79 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHH
Confidence 6789999999999999999998 8999999999 9999999999999999999999889999999985 4689
Q ss_pred HHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030 142 HKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY 195 (215)
Q Consensus 142 ~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~ 195 (215)
+++|+++++++|+++.|.++.+.+.||+.. .| .+||||++|+|++..
T Consensus 80 ~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~-----~P--~~~lid~~G~v~~~~ 126 (171)
T cd02969 80 MKAKAKEHGYPFPYLLDETQEVAKAYGAAC-----TP--DFFLFDPDGKLVYRG 126 (171)
T ss_pred HHHHHHHCCCCceEEECCchHHHHHcCCCc-----CC--cEEEECCCCeEEEee
Confidence 999999999999999999999999999986 78 999999999999875
No 35
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.92 E-value=7.5e-25 Score=160.41 Aligned_cols=107 Identities=23% Similarity=0.433 Sum_probs=100.3
Q ss_pred CCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC------CCHHHHHHHHHHcCCCeEEEE
Q 028030 84 GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG------DDSSSHKAFAKKYRLPYTLLS 157 (215)
Q Consensus 84 g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~------d~~~~~~~~~~~~~~~~~~~~ 157 (215)
|+++++++++||++||+|| ++||++|..++|.|++++++++++++++|+|+. ++.+.+++|+++++++|+++.
T Consensus 13 ~~~v~l~~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVAN 91 (126)
T ss_pred CCccCHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEE
Confidence 5789999999999999999 999999999999999999999988999999976 457899999999999999999
Q ss_pred cCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 158 DEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 158 d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
|+++.+.+.|++.. +| ++||||++|+|++.+.|.
T Consensus 92 D~~~~~~~~~~v~~-----~P--~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 92 DNDYATWRAYGNQY-----WP--ALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCchHHHHHhCCCc-----CC--eEEEECCCCcEEEEEecC
Confidence 99999999999986 88 999999999999999884
No 36
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.92 E-value=1.9e-24 Score=166.67 Aligned_cols=125 Identities=25% Similarity=0.439 Sum_probs=107.3
Q ss_pred cCCCCCCCCCeEEeCCCCC--eeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHH
Q 028030 67 KVSKGQAPPSFTLKDQEGR--NVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSH 142 (215)
Q Consensus 67 ~~~~g~~~P~f~l~~~~g~--~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~ 142 (215)
...+|+++|+|++++.+|+ .++++++ +||+++|+|| ++||++|+.++|.++++++ +|+++|+|+.+ +.++.
T Consensus 33 ~~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~~~~~~ 107 (173)
T TIGR00385 33 SALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELAK----DGLPIVGVDYKDQSQNA 107 (173)
T ss_pred chhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHH----cCCEEEEEECCCChHHH
Confidence 4568999999999999987 4555565 7999999999 9999999999999987753 47999999985 45778
Q ss_pred HHHHHHcCCCeE-EEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCc
Q 028030 143 KAFAKKYRLPYT-LLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEK 203 (215)
Q Consensus 143 ~~~~~~~~~~~~-~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~ 203 (215)
++|+++++++|+ ++.|+++.+.+.|++.. +| ++|+||++|+|++.+.|..+.+.
T Consensus 108 ~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~-----~P--~~~~id~~G~i~~~~~G~~~~~~ 162 (173)
T TIGR00385 108 LKFLKELGNPYQAILIDPNGKLGLDLGVYG-----AP--ETFLVDGNGVILYRHAGPLNNEV 162 (173)
T ss_pred HHHHHHcCCCCceEEECCCCchHHhcCCee-----CC--eEEEEcCCceEEEEEeccCCHHH
Confidence 899999999997 56799999999999987 88 99999999999999999654433
No 37
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.92 E-value=4.4e-24 Score=156.36 Aligned_cols=118 Identities=20% Similarity=0.405 Sum_probs=106.5
Q ss_pred CCCCCeEEeCCCC--CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC-CCHHHHHHHHHH
Q 028030 72 QAPPSFTLKDQEG--RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG-DDSSSHKAFAKK 148 (215)
Q Consensus 72 ~~~P~f~l~~~~g--~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~-d~~~~~~~~~~~ 148 (215)
+++|+|++++.+| +.+++++++||++||+|| ++||++|+.+++.|+++.+++ +++||+|+. ++.+.+++|+++
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCCcccccccCCCccccHHHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHHh
Confidence 3689999999998 889999999999999999 999999999999999987664 499999997 567899999999
Q ss_pred cCCCeE-EEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030 149 YRLPYT-LLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQ 200 (215)
Q Consensus 149 ~~~~~~-~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~ 200 (215)
++++|+ ++.|..+.+...|++.. +| ++|+||++|+|+..+.|..+
T Consensus 77 ~~~~~~~~~~D~~~~~~~~~~v~~-----~P--~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 77 HGNPYAAVGFDPDGRVGIDLGVYG-----VP--ETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred cCCCCceEEECCcchHHHhcCCCC-----CC--eEEEECCCceEEEEEeccCC
Confidence 999986 56899999999999987 88 99999999999999998653
No 38
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.90 E-value=5.2e-23 Score=147.73 Aligned_cols=110 Identities=24% Similarity=0.428 Sum_probs=98.8
Q ss_pred CCeEEeCCCCCeeecCCcC-CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC-
Q 028030 75 PSFTLKDQEGRNVSLSKFK-GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP- 152 (215)
Q Consensus 75 P~f~l~~~~g~~~~l~~~~-gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~- 152 (215)
|+|++.+.+|+.+++++++ ||++||+|| ++||++|+.++|.++++++++++ ++.++.++.++.+++++|++++++.
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~ 78 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEA 78 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCC
Confidence 7899999999999999997 999999999 99999999999999999888764 5999988877889999999999995
Q ss_pred eEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030 153 YTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY 195 (215)
Q Consensus 153 ~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~ 195 (215)
+|.+.+ .++...|++.. +| ++|+||++|+|+++.
T Consensus 79 ~p~~~~--~~~~~~~~~~~-----~P--~~~vid~~G~v~~~~ 112 (114)
T cd02967 79 FPYVLS--AELGMAYQVSK-----LP--YAVLLDEAGVIAAKG 112 (114)
T ss_pred CcEEec--HHHHhhcCCCC-----cC--eEEEECCCCeEEecc
Confidence 888764 56889999986 88 999999999998753
No 39
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.90 E-value=3.2e-23 Score=154.40 Aligned_cols=124 Identities=31% Similarity=0.487 Sum_probs=107.1
Q ss_pred CCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChh-hHHHHHHHHHHHHHHHHcC---cEEEEEeCC----CHHHHHH
Q 028030 73 APPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPG-CTKQACAFRDSYEKFKKAG---AEVIGISGD----DSSSHKA 144 (215)
Q Consensus 73 ~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~-C~~~~~~l~~l~~~~~~~~---v~vv~vs~d----~~~~~~~ 144 (215)
.+|+|++.+.+|+.+++.+++||++||+|| ++||++ |..+++.|+++++++++++ +++++|+.| +++.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~ 79 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKA 79 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHH
Confidence 479999999999999999999999999999 999997 9999999999999999865 999999975 4688999
Q ss_pred HHHHcCCCeEEEEcCC---hhHHHHhCCCccCC-------CCCCccEEEEEcCCCcEEEEEeC
Q 028030 145 FAKKYRLPYTLLSDEG---NKVRKEWGVPADFF-------GSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 145 ~~~~~~~~~~~~~d~~---~~~~~~~g~~~~~~-------g~~p~~~~~lid~~G~v~~~~~g 197 (215)
|+++++.+|+++.|.. ..+.+.||+..... +..+.+.+||||++|+|++.+.+
T Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 80 YAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 9999999999999874 78999999875211 11123489999999999998754
No 40
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.90 E-value=2.2e-22 Score=155.67 Aligned_cols=139 Identities=12% Similarity=0.216 Sum_probs=108.4
Q ss_pred CCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--------CCHHHHH
Q 028030 72 QAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--------DDSSSHK 143 (215)
Q Consensus 72 ~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--------d~~~~~~ 143 (215)
..+++|++.+.+|+.++|++++||++||+|| |+||+.|. +++.|++++++|+++|++||+|+. ++.++++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~ 80 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIK 80 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHH
Confidence 4689999999999999999999999999999 99999885 799999999999999999999987 4678999
Q ss_pred HHHH-HcCCCeEEE--EcCCh----hHHHHhCCCcc-----------------------CCCCCCccEEEEEcCCCcEEE
Q 028030 144 AFAK-KYRLPYTLL--SDEGN----KVRKEWGVPAD-----------------------FFGSLPGRQTYILDKNGVVQL 193 (215)
Q Consensus 144 ~~~~-~~~~~~~~~--~d~~~----~~~~~~g~~~~-----------------------~~g~~p~~~~~lid~~G~v~~ 193 (215)
+|++ +++++||++ .|.++ .+++.+--... ......++..||||++|+++.
T Consensus 81 ~f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~ 160 (183)
T PRK10606 81 TYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQ 160 (183)
T ss_pred HHHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEE
Confidence 9997 799999999 44332 34443311000 001233678999999999999
Q ss_pred EEeCCCCCCc--cHHHHHHHH
Q 028030 194 IYNNQFQPEK--HIDETLKFL 212 (215)
Q Consensus 194 ~~~g~~~~~~--~~~~il~~l 212 (215)
+|.+...+.. ..++|.++|
T Consensus 161 r~~~~~~p~~~~i~~~i~~~l 181 (183)
T PRK10606 161 RFSPDMTPEDPIVMESIKLAL 181 (183)
T ss_pred EECCCCCCCHHHHHHHHHHHh
Confidence 9998776653 334443333
No 41
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.89 E-value=4.6e-22 Score=174.58 Aligned_cols=132 Identities=18% Similarity=0.290 Sum_probs=114.4
Q ss_pred CCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC------CHHH
Q 028030 68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD------DSSS 141 (215)
Q Consensus 68 ~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d------~~~~ 141 (215)
...++.+|+|++.|.+|+.+.++ +||++||+|| |+||++|+.++|.|++++++++.++++||+|+.+ +.+.
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~ 108 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGD 108 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc--CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHH
Confidence 66778999999999999999987 7999999999 9999999999999999999998778999999863 3467
Q ss_pred HHHHHHHcCC-CeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030 142 HKAFAKKYRL-PYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK 210 (215)
Q Consensus 142 ~~~~~~~~~~-~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~ 210 (215)
+++|++..++ .++++.|.++++.+.|++.. +| +++|||++|+|+....|... .+.+.+.++
T Consensus 109 ~~~~~~~~~y~~~pV~~D~~~~lak~fgV~g-----iP--Tt~IIDkdGkIV~~~~G~~~-~eeL~a~Ie 170 (521)
T PRK14018 109 FQKWYAGLDYPKLPVLTDNGGTLAQSLNISV-----YP--SWAIIGKDGDVQRIVKGSIS-EAQALALIR 170 (521)
T ss_pred HHHHHHhCCCcccceeccccHHHHHHcCCCC-----cC--eEEEEcCCCeEEEEEeCCCC-HHHHHHHHH
Confidence 7888888776 48999999999999999997 99 99999999999999999653 233344443
No 42
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.89 E-value=1.8e-22 Score=150.46 Aligned_cols=103 Identities=17% Similarity=0.343 Sum_probs=88.2
Q ss_pred CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-------CcEEEEEeCCC-HHHHHHHHHHcCCCeEEE
Q 028030 85 RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-------GAEVIGISGDD-SSSHKAFAKKYRLPYTLL 156 (215)
Q Consensus 85 ~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-------~v~vv~vs~d~-~~~~~~~~~~~~~~~~~~ 156 (215)
..+++++++||+++|+|| |+||++|+.++|.|.+++++++++ ++++|+|+.|. .+.+++|+++++++|+.+
T Consensus 16 ~~~~ls~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~ 94 (146)
T cd03008 16 EREIVARLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL 94 (146)
T ss_pred ccccHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence 346788999999999999 999999999999999999988753 69999999985 467899999999876442
Q ss_pred --Ec-CChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030 157 --SD-EGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY 195 (215)
Q Consensus 157 --~d-~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~ 195 (215)
.+ ..+.+.+.|++.. +| ++||||++|+|+...
T Consensus 95 p~~~~~~~~l~~~y~v~~-----iP--t~vlId~~G~Vv~~~ 129 (146)
T cd03008 95 PFEDEFRRELEAQFSVEE-----LP--TVVVLKPDGDVLAAN 129 (146)
T ss_pred cccchHHHHHHHHcCCCC-----CC--EEEEECCCCcEEeeC
Confidence 33 3468999999987 99 999999999999663
No 43
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.88 E-value=2.4e-22 Score=154.77 Aligned_cols=136 Identities=21% Similarity=0.248 Sum_probs=111.5
Q ss_pred ccCCCCCCCCCeEEeCC----------CCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEE----
Q 028030 66 AKVSKGQAPPSFTLKDQ----------EGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEV---- 131 (215)
Q Consensus 66 ~~~~~g~~~P~f~l~~~----------~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~v---- 131 (215)
-+++.|+++|...+.|. +.+.++.++++||+.||+|| |+||++|+.++|.|.++ +++|+.+
T Consensus 21 ~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~ 95 (184)
T TIGR01626 21 HNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQ 95 (184)
T ss_pred hhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCCCccccc
Confidence 45788999998887653 34667788899999999999 99999999999999999 5568999
Q ss_pred --EEEeCCCH-----HHHHHHHHHcCCCeE---EEEcCChhHHHHhCCCccCCCCCCccEE-EEEcCCCcEEEEEeCCCC
Q 028030 132 --IGISGDDS-----SSHKAFAKKYRLPYT---LLSDEGNKVRKEWGVPADFFGSLPGRQT-YILDKNGVVQLIYNNQFQ 200 (215)
Q Consensus 132 --v~vs~d~~-----~~~~~~~~~~~~~~~---~~~d~~~~~~~~~g~~~~~~g~~p~~~~-~lid~~G~v~~~~~g~~~ 200 (215)
++|+.|+. .-++.|+++.+..|| ++.|+++.+...||+.. +| .+ ||||++|+|++.+.|...
T Consensus 96 ~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~-----~P--~T~fVIDk~GkVv~~~~G~l~ 168 (184)
T TIGR01626 96 TTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNS-----ED--SAIIVLDKTGKVKFVKEGALS 168 (184)
T ss_pred ceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCC-----CC--ceEEEECCCCcEEEEEeCCCC
Confidence 99999863 235666667777777 88999999999999987 87 67 899999999999999754
Q ss_pred CCccHHHHHHHHhc
Q 028030 201 PEKHIDETLKFLQS 214 (215)
Q Consensus 201 ~~~~~~~il~~l~~ 214 (215)
. +.+++++.+|++
T Consensus 169 ~-ee~e~~~~li~~ 181 (184)
T TIGR01626 169 D-SDIQTVISLVNG 181 (184)
T ss_pred H-HHHHHHHHHHHH
Confidence 4 345667776654
No 44
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.88 E-value=7.8e-22 Score=140.25 Aligned_cols=114 Identities=35% Similarity=0.651 Sum_probs=106.9
Q ss_pred CeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC--HHHHHHHHHHcCCCe
Q 028030 76 SFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD--SSSHKAFAKKYRLPY 153 (215)
Q Consensus 76 ~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~--~~~~~~~~~~~~~~~ 153 (215)
+|++.+.+|+.+++.+++||+++|+|| ++||+.|+..++.|.++.+++++.++.+++|+.|. ++.+++|.++++.+|
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~ 79 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITF 79 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence 578899999999999999999999999 99999999999999999999987789999999987 899999999999999
Q ss_pred EEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030 154 TLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 154 ~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g 197 (215)
+++.|...++.+.|++.. +| .++|+|++|+|++.+.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~-----~P--~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 80 PVLLDPDGELAKAYGVRG-----LP--TTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEcCcchHHHhcCcCc-----cc--eEEEECCCCcEEEEecC
Confidence 999999999999999986 88 99999999999988765
No 45
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.87 E-value=1.4e-21 Score=142.12 Aligned_cols=114 Identities=24% Similarity=0.452 Sum_probs=103.3
Q ss_pred CCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--CHHHHHHHHHHcCCC
Q 028030 75 PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--DSSSHKAFAKKYRLP 152 (215)
Q Consensus 75 P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--~~~~~~~~~~~~~~~ 152 (215)
|+|++++.+|+.+++++++||++||+|| ++||++|+..++.|++++++ +.+++|+.| +++.+++|.++++++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~~~ 74 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKKGYG 74 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999 99999999999999999765 678888875 478999999999999
Q ss_pred eEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCC
Q 028030 153 YTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPE 202 (215)
Q Consensus 153 ~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~ 202 (215)
|+++.|+++++.+.|++.. +| +++++|++| |++.+.|..+.+
T Consensus 75 ~~~~~d~~~~~~~~~~i~~-----~P--~~~vid~~g-i~~~~~g~~~~~ 116 (123)
T cd03011 75 FPVINDPDGVISARWGVSV-----TP--AIVIVDPGG-IVFVTTGVTSEW 116 (123)
T ss_pred ccEEECCCcHHHHhCCCCc-----cc--EEEEEcCCC-eEEEEeccCCHH
Confidence 9999999999999999987 88 999999999 999998865443
No 46
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.87 E-value=1.7e-21 Score=185.04 Aligned_cols=136 Identities=18% Similarity=0.295 Sum_probs=118.1
Q ss_pred ccCCCCCCCCCeEEeC--CCCCeeec-CCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC---C--
Q 028030 66 AKVSKGQAPPSFTLKD--QEGRNVSL-SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG---D-- 137 (215)
Q Consensus 66 ~~~~~g~~~P~f~l~~--~~g~~~~l-~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~---d-- 137 (215)
.....|.++|+|...+ .+|+++++ ++++||++||+|| ++||++|+.++|.|++++++|+++++.||+|+. |
T Consensus 389 ~~~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~ 467 (1057)
T PLN02919 389 ESKKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNE 467 (1057)
T ss_pred hccccCCcCCCCcccccccCCccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccccc
Confidence 3456799999999876 78999998 5899999999999 999999999999999999999988999999973 3
Q ss_pred -CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030 138 -DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK 210 (215)
Q Consensus 138 -~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~ 210 (215)
+.+++++++++++++|+++.|.+.++.+.|++.. +| +++|||++|+|+.++.|.... +.++++++
T Consensus 468 ~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~~-----iP--t~ilid~~G~iv~~~~G~~~~-~~l~~~l~ 533 (1057)
T PLN02919 468 KDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVSS-----WP--TFAVVSPNGKLIAQLSGEGHR-KDLDDLVE 533 (1057)
T ss_pred ccHHHHHHHHHHhCCCccEEECCchHHHHhcCCCc-----cc--eEEEECCCCeEEEEEecccCH-HHHHHHHH
Confidence 3578899999999999999999999999999987 99 999999999999998885432 33444443
No 47
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.84 E-value=2.2e-20 Score=137.72 Aligned_cols=104 Identities=25% Similarity=0.398 Sum_probs=88.9
Q ss_pred CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCC-HHHHHHHHHHcCCCeEEEE--c-
Q 028030 85 RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDD-SSSHKAFAKKYRLPYTLLS--D- 158 (215)
Q Consensus 85 ~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~-~~~~~~~~~~~~~~~~~~~--d- 158 (215)
+++++++++||++||+|| ++||++|+.++|.|++++++++++ +++|++|+.|. .+++++|+++++ .|..+. |
T Consensus 8 ~~v~l~~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~-~~~~~~~~d~ 85 (132)
T cd02964 8 GVVPVSALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMP-PWLAVPFEDE 85 (132)
T ss_pred ccccHHHhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCC-CeEeeccCcH
Confidence 589999999999999999 999999999999999999999875 79999999975 478899999998 655442 2
Q ss_pred -CChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030 159 -EGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 159 -~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g 197 (215)
....+.+.|++.. +| +++|||++|+|+.....
T Consensus 86 ~~~~~~~~~~~v~~-----iP--t~~lid~~G~iv~~~~~ 118 (132)
T cd02964 86 ELRELLEKQFKVEG-----IP--TLVVLKPDGDVVTTNAR 118 (132)
T ss_pred HHHHHHHHHcCCCC-----CC--EEEEECCCCCEEchhHH
Confidence 2356778899987 89 99999999999876543
No 48
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.84 E-value=7.5e-21 Score=139.96 Aligned_cols=110 Identities=25% Similarity=0.403 Sum_probs=91.6
Q ss_pred EeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCCH-HHHHHHHHHcCCC-eE
Q 028030 79 LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDDS-SSHKAFAKKYRLP-YT 154 (215)
Q Consensus 79 l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~-~~~~~~~~~~~~~-~~ 154 (215)
+.|.+|+.+++++++||++||+|| ++||++|+.++|.|++++++++++ +++|++|+.|.. +.++++++++++. ++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~ 81 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVP 81 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcc
Confidence 468899999999999999999999 999999999999999999999875 799999999754 6778888776532 22
Q ss_pred EE-EcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEe
Q 028030 155 LL-SDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYN 196 (215)
Q Consensus 155 ~~-~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~ 196 (215)
+. .|....+.+.||+.. +| +++|||++|+|+....
T Consensus 82 ~~~~~~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~ 117 (131)
T cd03009 82 FSDRERRSRLNRTFKIEG-----IP--TLIILDADGEVVTTDA 117 (131)
T ss_pred cCCHHHHHHHHHHcCCCC-----CC--EEEEECCCCCEEcccH
Confidence 11 234567899999987 89 9999999999987643
No 49
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.81 E-value=2.3e-19 Score=137.53 Aligned_cols=109 Identities=20% Similarity=0.345 Sum_probs=89.9
Q ss_pred CCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030 69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK 148 (215)
Q Consensus 69 ~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~ 148 (215)
.+..+.|+|++. +|+.+++++++ ||+|| ++||++|++++|.|++++++| |++|++|+.|+..
T Consensus 50 ~~~~~~~~f~l~--dG~~v~lsd~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~-------- 111 (181)
T PRK13728 50 TEKPAPRWFRLS--NGRQVNLADWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG-------- 111 (181)
T ss_pred cCCCCCCccCCC--CCCEeehhHce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC--------
Confidence 455677888885 99999999987 88899 999999999999999999887 5999999988553
Q ss_pred cCCCeEEEEc-CChhHHHHhCC--CccCCCCCCccEEEEEcCCCcEEE-EEeCCCCCCc
Q 028030 149 YRLPYTLLSD-EGNKVRKEWGV--PADFFGSLPGRQTYILDKNGVVQL-IYNNQFQPEK 203 (215)
Q Consensus 149 ~~~~~~~~~d-~~~~~~~~~g~--~~~~~g~~p~~~~~lid~~G~v~~-~~~g~~~~~~ 203 (215)
...||++.| ..+.+.+.||+ .. +| ++||||++|++++ .+.|..+.+.
T Consensus 112 -~~~fPv~~dd~~~~~~~~~g~~~~~-----iP--ttfLId~~G~i~~~~~~G~~~~~~ 162 (181)
T PRK13728 112 -DTAFPEALPAPPDVMQTFFPNIPVA-----TP--TTFLVNVNTLEALPLLQGATDAAG 162 (181)
T ss_pred -CCCCceEecCchhHHHHHhCCCCCC-----CC--eEEEEeCCCcEEEEEEECCCCHHH
Confidence 268999985 56678888985 34 88 9999999999975 6888665433
No 50
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=7.7e-19 Score=128.61 Aligned_cols=140 Identities=23% Similarity=0.319 Sum_probs=111.3
Q ss_pred CCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHHHHH
Q 028030 72 QAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSSSHK 143 (215)
Q Consensus 72 ~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~~~~ 143 (215)
..+.+|++++.+|++++|++++||++||+.. |+-|+.-. ++..|+.|+++|+++|++|+++..+ +.++++
T Consensus 3 ~~~yd~~~~~~~G~~~~l~~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~ 80 (162)
T COG0386 3 MSIYDFSVKDIDGEPVSLSDYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIA 80 (162)
T ss_pred cccccceeeccCCCCccHHHhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHH
Confidence 3577999999999999999999999999999 99999666 9999999999999999999999863 678999
Q ss_pred HHHH-HcCCCeEEEE--c----CChhHHHHhCCCcc----CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030 144 AFAK-KYRLPYTLLS--D----EGNKVRKEWGVPAD----FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 144 ~~~~-~~~~~~~~~~--d----~~~~~~~~~g~~~~----~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l 212 (215)
+|++ .|+++||++. | +.+.+++.+--... ....-.+++.||||++|+|+.++.....+++...+|-++|
T Consensus 81 ~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL 160 (162)
T COG0386 81 KFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL 160 (162)
T ss_pred HHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence 9996 8999999984 2 22334444322211 1112347899999999999999999877776556555555
Q ss_pred h
Q 028030 213 Q 213 (215)
Q Consensus 213 ~ 213 (215)
.
T Consensus 161 ~ 161 (162)
T COG0386 161 A 161 (162)
T ss_pred c
Confidence 3
No 51
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.80 E-value=9.7e-19 Score=121.49 Aligned_cols=90 Identities=31% Similarity=0.630 Sum_probs=78.2
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHH-HcCcEEEEEeCCC-HHHHHHHHHHcCCCeEEEEcC---ChhHHHHhC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFK-KAGAEVIGISGDD-SSSHKAFAKKYRLPYTLLSDE---GNKVRKEWG 168 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~-~~~v~vv~vs~d~-~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~g 168 (215)
||+++|+|| ++||++|+.++|.|.+++++|+ +.+++||+|+.|. .+++++++++++.+|..+... ...+.+.|+
T Consensus 1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 799999999 9999999999999999999999 5579999999985 489999999998887776533 567999999
Q ss_pred CCccCCCCCCccEEEEEcCCCcE
Q 028030 169 VPADFFGSLPGRQTYILDKNGVV 191 (215)
Q Consensus 169 ~~~~~~g~~p~~~~~lid~~G~v 191 (215)
+.. +| +++|+|++|+|
T Consensus 80 i~~-----iP--~~~lld~~G~I 95 (95)
T PF13905_consen 80 ING-----IP--TLVLLDPDGKI 95 (95)
T ss_dssp -TS-----SS--EEEEEETTSBE
T ss_pred CCc-----CC--EEEEECCCCCC
Confidence 998 99 99999999997
No 52
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=9.8e-18 Score=124.98 Aligned_cols=145 Identities=34% Similarity=0.543 Sum_probs=127.0
Q ss_pred CCCCCCCCeEEe---CCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030 69 SKGQAPPSFTLK---DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF 145 (215)
Q Consensus 69 ~~g~~~P~f~l~---~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~ 145 (215)
.+..+.|+|.-+ |-.-+.++|++++||++++.||+.++.-.|..+.-.+...++++++.|-+||++|+|+.+.+.+|
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW 84 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAW 84 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhH
Confidence 455666888854 34447899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH----cC---CCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 146 AKK----YR---LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 146 ~~~----~~---~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
+.. -| +++|++.|.+.++.+.||+.....| ++-+-.|+||++|.++..-..+.......++++++++.
T Consensus 85 ~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G-~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqA 159 (196)
T KOG0852|consen 85 INTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEG-IALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQA 159 (196)
T ss_pred hcCchhhCCcCccccceeeccchhhHHhcCceecCCC-cceeeeEEEccccceEEeeecccCCCccHHHHHHHHHH
Confidence 962 33 4599999999999999999987666 66679999999999999888888888889999998864
No 53
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.2e-17 Score=124.68 Aligned_cols=148 Identities=23% Similarity=0.398 Sum_probs=128.6
Q ss_pred ccCCCCCCCCCeEEeCCCCCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030 66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA 144 (215)
Q Consensus 66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~ 144 (215)
..+..|+.+|+|+..++.|+ +.+.|+.| .|.+|+-.|+++.|.|..++-++++++.+|.++|+..|++|+|+.+.++.
T Consensus 4 ~~l~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~ 82 (224)
T KOG0854|consen 4 PRLRLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKD 82 (224)
T ss_pred CcccccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHH
Confidence 45789999999999999998 89999855 79999999999999999999999999999999999999999999888777
Q ss_pred HHHHc-------C--CCeEEEEcCChhHHHHhCCCccC-CC--CCC--ccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030 145 FAKKY-------R--LPYTLLSDEGNKVRKEWGVPADF-FG--SLP--GRQTYILDKNGVVQLIYNNQFQPEKHIDETLK 210 (215)
Q Consensus 145 ~~~~~-------~--~~~~~~~d~~~~~~~~~g~~~~~-~g--~~p--~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~ 210 (215)
|.+.. + ++||++.|++++++-.||+.+.. .+ .+| .+.+|+||++.+|+..+..+.....+.+++|+
T Consensus 83 Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dEiLR 162 (224)
T KOG0854|consen 83 WIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDEILR 162 (224)
T ss_pred HHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHHHHH
Confidence 77643 3 78999999999999999997531 11 122 56999999999999998888888999999999
Q ss_pred HHhc
Q 028030 211 FLQS 214 (215)
Q Consensus 211 ~l~~ 214 (215)
.|++
T Consensus 163 vids 166 (224)
T KOG0854|consen 163 VIDS 166 (224)
T ss_pred HHHH
Confidence 8864
No 54
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.1e-16 Score=118.65 Aligned_cols=142 Identities=21% Similarity=0.303 Sum_probs=109.8
Q ss_pred CCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHHHH
Q 028030 71 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSSSH 142 (215)
Q Consensus 71 g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~~~ 142 (215)
-..+.+|+..|.+|+.++|++++||++||+.. |+.|+.-...+..|+.|+++|+++|++|+++..+ ..+++
T Consensus 11 ~~siydf~~~d~~G~~v~l~~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei 89 (171)
T KOG1651|consen 11 KGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEI 89 (171)
T ss_pred hcceeeeEEecCCCCCccHHHhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHH
Confidence 36788999999999999999999999999999 9999999999999999999999999999999863 44677
Q ss_pred HHHH-HHcCCCeEEEE--cC----ChhHHHHhCCCcc-CC--CCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030 143 KAFA-KKYRLPYTLLS--DE----GNKVRKEWGVPAD-FF--GSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 143 ~~~~-~~~~~~~~~~~--d~----~~~~~~~~g~~~~-~~--g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l 212 (215)
..++ .+++..|+++. |. ...+++-+--... .. +.-.+++.||||+||+|+.+|.....+.....+|.++|
T Consensus 90 ~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL 169 (171)
T KOG1651|consen 90 LNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL 169 (171)
T ss_pred HHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence 7777 57888888873 32 2334443322110 00 22347899999999999999988766655555555555
Q ss_pred h
Q 028030 213 Q 213 (215)
Q Consensus 213 ~ 213 (215)
.
T Consensus 170 ~ 170 (171)
T KOG1651|consen 170 A 170 (171)
T ss_pred c
Confidence 3
No 55
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.9e-16 Score=113.49 Aligned_cols=127 Identities=30% Similarity=0.423 Sum_probs=113.3
Q ss_pred cCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030 67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA 146 (215)
Q Consensus 67 ~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~ 146 (215)
.+++|+++|+|++.+.|.+.+++.++.||..+|..+|+-..+.|..+.+.+++.+.++. +..|+.||.|-+...++|+
T Consensus 17 ~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~DLPFAq~RfC 94 (158)
T COG2077 17 EPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMDLPFAQKRFC 94 (158)
T ss_pred CCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEEeCCChhHHhhhh
Confidence 46899999999999999999999999999999999999999999999999999988887 5899999999999999999
Q ss_pred HHcCCC-eEEEEcC-ChhHHHHhCCCccCC---CCCCccEEEEEcCCCcEEEEEe
Q 028030 147 KKYRLP-YTLLSDE-GNKVRKEWGVPADFF---GSLPGRQTYILDKNGVVQLIYN 196 (215)
Q Consensus 147 ~~~~~~-~~~~~d~-~~~~~~~~g~~~~~~---g~~p~~~~~lid~~G~v~~~~~ 196 (215)
...|++ ...++|- +..+.++||+.-... | +-.|++|++|.+|+|.+...
T Consensus 95 ~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~g-LlARaV~V~De~g~V~y~el 148 (158)
T COG2077 95 GAEGIENVITLSDFRDRAFGENYGVLINEGPLAG-LLARAVFVLDENGKVTYSEL 148 (158)
T ss_pred hhcCcccceEhhhhhhhhhhHhhCEEeccccccC-eeeeEEEEEcCCCcEEEEEc
Confidence 999998 7777875 456889999975443 3 55789999999999998754
No 56
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.68 E-value=5.1e-16 Score=119.72 Aligned_cols=128 Identities=27% Similarity=0.415 Sum_probs=102.2
Q ss_pred CCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCC----CHHHHH
Q 028030 70 KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGD----DSSSHK 143 (215)
Q Consensus 70 ~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d----~~~~~~ 143 (215)
.....|+|++.|.+|+++++++++||++||+|.++.|-..|...+..|+++.++++++ .+++|.||+| +++.++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~ 107 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLK 107 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHH
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHH
Confidence 4567889999999999999999999999999996666678999999999999999874 6999999985 679999
Q ss_pred HHHHHcCCCeEEEEc---CChhHHHHhCCCccC---------CCCCCccEEEEEcCCCcEEEEEeC
Q 028030 144 AFAKKYRLPYTLLSD---EGNKVRKEWGVPADF---------FGSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 144 ~~~~~~~~~~~~~~d---~~~~~~~~~g~~~~~---------~g~~p~~~~~lid~~G~v~~~~~g 197 (215)
+|++.++.+|..+.. +-.++.+.|++.... +...++..++|||++|+|+..+.+
T Consensus 108 ~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 108 KYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 999999988766542 345678888876321 113466799999999999998865
No 57
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.67 E-value=4.9e-16 Score=117.02 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=68.6
Q ss_pred CCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhH
Q 028030 84 GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKV 163 (215)
Q Consensus 84 g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~ 163 (215)
|+.++++ ++.||+|| ++||++|++++|.|+++++++ ++.|++|+.|+... ..|+...|.....
T Consensus 44 G~~~~l~----~~~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~---------~~fp~~~~~~~~~ 106 (153)
T TIGR02738 44 GRHANQD----DYALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL---------TGFPDPLPATPEV 106 (153)
T ss_pred chhhhcC----CCEEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc---------cccccccCCchHH
Confidence 6666654 45599999 999999999999999999887 58999999886431 1355555444444
Q ss_pred H-HHh---CCCccCCCCCCccEEEEEcCCCcEE-EEEeCCCC
Q 028030 164 R-KEW---GVPADFFGSLPGRQTYILDKNGVVQ-LIYNNQFQ 200 (215)
Q Consensus 164 ~-~~~---g~~~~~~g~~p~~~~~lid~~G~v~-~~~~g~~~ 200 (215)
. ..| ++.. +| ++|+||++|+++ ....|..+
T Consensus 107 ~~~~~~~~~v~~-----iP--Tt~LID~~G~~i~~~~~G~~s 141 (153)
T TIGR02738 107 MQTFFPNPRPVV-----TP--ATFLVNVNTRKAYPVLQGAVD 141 (153)
T ss_pred HHHHhccCCCCC-----CC--eEEEEeCCCCEEEEEeecccC
Confidence 3 445 5654 88 999999998864 46777553
No 58
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.63 E-value=1.1e-15 Score=114.13 Aligned_cols=106 Identities=19% Similarity=0.247 Sum_probs=81.4
Q ss_pred EEeCCCCCeeecCCc--CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEE
Q 028030 78 TLKDQEGRNVSLSKF--KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTL 155 (215)
Q Consensus 78 ~l~~~~g~~~~l~~~--~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~ 155 (215)
++++++++...+.+. +||++||+|| ++||++|+..+|.|.+++++++++ +.|+.|.+|..+
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~~~--------------- 64 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDNPK--------------- 64 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCCcc---------------
Confidence 345556666666554 6899999999 999999999999999999998764 889999887532
Q ss_pred EEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030 156 LSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 156 ~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l 212 (215)
..++...|++.. +| +++++|++|+++..+.|... .+.+.++++.+
T Consensus 65 ----~~~~~~~~~V~~-----iP--t~v~~~~~G~~v~~~~G~~~-~~~l~~~l~~l 109 (142)
T cd02950 65 ----WLPEIDRYRVDG-----IP--HFVFLDREGNEEGQSIGLQP-KQVLAQNLDAL 109 (142)
T ss_pred ----cHHHHHHcCCCC-----CC--EEEEECCCCCEEEEEeCCCC-HHHHHHHHHHH
Confidence 124567889987 99 99999999999999998643 33344454443
No 59
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.62 E-value=1.5e-14 Score=114.29 Aligned_cols=138 Identities=23% Similarity=0.367 Sum_probs=111.2
Q ss_pred CeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHH---HcCcEEEEEeCC----CHHHHHHHHH-
Q 028030 76 SFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFK---KAGAEVIGISGD----DSSSHKAFAK- 147 (215)
Q Consensus 76 ~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~---~~~v~vv~vs~d----~~~~~~~~~~- 147 (215)
+|+++|.+|+.+++.+++||++||+|.++.|...|..++..|.++.+++. ..+++++.|++| +++.+++|.+
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 89999999999999999999999999977777789999999999999988 346889999975 6788889988
Q ss_pred HcCCCeEEEEc---CChhHHHHhCCCc--------cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 148 KYRLPYTLLSD---EGNKVRKEWGVPA--------DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 148 ~~~~~~~~~~d---~~~~~~~~~g~~~--------~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
.+...|..+.. ...+++++|++.. ..+...++..+++||++|++...+.+...++..++++.+.++
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 55555776654 3457888998874 134556777899999999999998876665565566555554
No 60
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.52 E-value=1e-13 Score=97.81 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=64.2
Q ss_pred cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030 92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA 171 (215)
Q Consensus 92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 171 (215)
.+||++||+|| ++||++|+..+|.|.++++++ .++.++.|+.|..... ..+.+.|++..
T Consensus 13 ~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~------------------~~l~~~~~V~~ 71 (103)
T cd02985 13 AKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDST------------------MELCRREKIIE 71 (103)
T ss_pred cCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHH------------------HHHHHHcCCCc
Confidence 46899999999 999999999999999999998 3689999988764332 25667788887
Q ss_pred cCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 172 DFFGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 172 ~~~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| +++ +.++|+++..+.|.
T Consensus 72 -----~P--t~~-~~~~G~~v~~~~G~ 90 (103)
T cd02985 72 -----VP--HFL-FYKDGEKIHEEEGI 90 (103)
T ss_pred -----CC--EEE-EEeCCeEEEEEeCC
Confidence 99 644 44899999999884
No 61
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.51 E-value=1.1e-13 Score=102.80 Aligned_cols=110 Identities=27% Similarity=0.388 Sum_probs=94.6
Q ss_pred eEEeCCCCCeeecC-CcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCC-HHHHHHHHHHcCCC
Q 028030 77 FTLKDQEGRNVSLS-KFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDD-SSSHKAFAKKYRLP 152 (215)
Q Consensus 77 f~l~~~~g~~~~l~-~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~-~~~~~~~~~~~~~~ 152 (215)
..+...+|..+..+ .++||++.++|- |.||++|+...|.|.+.|++.++. .++||.||.|. .+++..|+++++.+
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~ 93 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGD 93 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCC
Confidence 55677888887776 469999999999 999999999999999999999975 49999999975 57899999999999
Q ss_pred eEEEE---cCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEE
Q 028030 153 YTLLS---DEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194 (215)
Q Consensus 153 ~~~~~---d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~ 194 (215)
|..+. +...++...|++.. +| ...+++++|.++..
T Consensus 94 W~~iPf~d~~~~~l~~ky~v~~-----iP--~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 94 WLAIPFGDDLIQKLSEKYEVKG-----IP--ALVILKPDGTVVTE 131 (157)
T ss_pred eEEecCCCHHHHHHHHhcccCc-----Cc--eeEEecCCCCEehH
Confidence 87764 23567889999997 99 99999999988754
No 62
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.47 E-value=8.9e-14 Score=114.23 Aligned_cols=105 Identities=15% Similarity=0.316 Sum_probs=80.2
Q ss_pred CCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhH
Q 028030 84 GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKV 163 (215)
Q Consensus 84 g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~ 163 (215)
.+...+++++|+++||+|| ++||++|+.++|.|++++++| |+.|++|++|.... ..|+.+ +.+..+
T Consensus 156 ~~~~~l~~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~---------~~fp~~-~~d~~l 221 (271)
T TIGR02740 156 QKDRVMKDLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL---------PGFPNA-RPDAGQ 221 (271)
T ss_pred HHHHHHHHhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc---------ccCCcc-cCCHHH
Confidence 3446788899999999999 999999999999999998887 48999999986532 125554 345668
Q ss_pred HHHhCCCccCCCCCCccEEEEEcCC-CcEEEEEeCCCCCCccHHHHH
Q 028030 164 RKEWGVPADFFGSLPGRQTYILDKN-GVVQLIYNNQFQPEKHIDETL 209 (215)
Q Consensus 164 ~~~~g~~~~~~g~~p~~~~~lid~~-G~v~~~~~g~~~~~~~~~~il 209 (215)
...||+.. +| ++||+|++ |+|.....|....+...+.++
T Consensus 222 a~~~gV~~-----vP--tl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~ 261 (271)
T TIGR02740 222 AQQLKIRT-----VP--AVFLADPDPNQFTPIGFGVMSADELVDRIL 261 (271)
T ss_pred HHHcCCCc-----CC--eEEEEECCCCEEEEEEeCCCCHHHHHHHHH
Confidence 89999987 89 99999995 566556667554444444443
No 63
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.5e-13 Score=99.22 Aligned_cols=85 Identities=16% Similarity=0.302 Sum_probs=70.3
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.+++|||+|| |.||++|+...|.|+++..+|.++ +++.-|++ |+..+++..|++..
T Consensus 60 S~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdt---------------------D~~~ela~~Y~I~a- 115 (150)
T KOG0910|consen 60 SDVPVLVDFH-AEWCGPCKMLGPILEELVSEYAGK-FKLYKVDT---------------------DEHPELAEDYEISA- 115 (150)
T ss_pred cCCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcc---------------------ccccchHhhcceee-
Confidence 3689999999 999999999999999999999765 88888875 66678999999998
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHH
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETL 209 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il 209 (215)
+| +++++ ++|+.+..+.|..+.+. +.+.+
T Consensus 116 ----vP--tvlvf-knGe~~d~~vG~~~~~~-l~~~i 144 (150)
T KOG0910|consen 116 ----VP--TVLVF-KNGEKVDRFVGAVPKEQ-LRSLI 144 (150)
T ss_pred ----ee--EEEEE-ECCEEeeeecccCCHHH-HHHHH
Confidence 99 67766 79999999999765433 33333
No 64
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.6e-12 Score=95.44 Aligned_cols=148 Identities=24% Similarity=0.411 Sum_probs=114.8
Q ss_pred ccccCCCCCCCCC--eE-EeCC----CCCeeecCCc-CCCcEEEEEEcCCCChhh-HHHHHHHHHHHHHHHHcCcEEE-E
Q 028030 64 ISAKVSKGQAPPS--FT-LKDQ----EGRNVSLSKF-KGKPVVVYFYPADETPGC-TKQACAFRDSYEKFKKAGAEVI-G 133 (215)
Q Consensus 64 ~~~~~~~g~~~P~--f~-l~~~----~g~~~~l~~~-~gk~~ll~f~~a~~C~~C-~~~~~~l~~l~~~~~~~~v~vv-~ 133 (215)
....+.+|+.+|+ ++ +.+. .+.+++++++ +||.++|+=.|+.+.|.| +.++|.+.+-.++++.+|++.| .
T Consensus 5 ~~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iic 84 (171)
T KOG0541|consen 5 VMAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIIC 84 (171)
T ss_pred ccccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEE
Confidence 3467889999999 44 2222 2337899987 999999999999999995 6999999999999999998755 5
Q ss_pred EeCCCHHHHHHHHHHcCCC--eEEEEcCChhHHHHhCCCccCC---CCCCccEEEEEcCCCcEEEEEeCCCCCC---ccH
Q 028030 134 ISGDDSSSHKAFAKKYRLP--YTLLSDEGNKVRKEWGVPADFF---GSLPGRQTYILDKNGVVQLIYNNQFQPE---KHI 205 (215)
Q Consensus 134 vs~d~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~g~~~~~~---g~~p~~~~~lid~~G~v~~~~~g~~~~~---~~~ 205 (215)
|++||+..++.|.+.++.+ ..++.|.++++.+.+|+..+.. +...++++-++-.||+|..........+ ...
T Consensus 85 vSVnDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vvengkV~~~nvE~~g~~~t~ssa 164 (171)
T KOG0541|consen 85 VSVNDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVENGKVTVVNVEEGGTDFTVSSA 164 (171)
T ss_pred EecCcHHHHHHHHhhcCccceEEEEecCCCceeeeccceeeeccccCccccccEEEEEeCCeEEEEEeccCCCceEEecH
Confidence 8999999999999999986 7889999999999999986532 2355667777778999998865432221 334
Q ss_pred HHHHHH
Q 028030 206 DETLKF 211 (215)
Q Consensus 206 ~~il~~ 211 (215)
+.+++.
T Consensus 165 ~~il~~ 170 (171)
T KOG0541|consen 165 EDILKQ 170 (171)
T ss_pred HHHhhc
Confidence 555543
No 65
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.44 E-value=1.2e-12 Score=91.78 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=63.0
Q ss_pred CCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030 90 SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 169 (215)
Q Consensus 90 ~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~ 169 (215)
++++||++||+|| ++||++|+..+|.+.+++++++ ++.++.|..++ ....+.+.|++
T Consensus 14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~--------------------~~~~l~~~~~V 70 (100)
T cd02999 14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS--------------------IKPSLLSRYGV 70 (100)
T ss_pred HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC--------------------CCHHHHHhcCC
Confidence 4568999999999 9999999999999999999986 47888875431 34478889999
Q ss_pred CccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 170 PADFFGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 170 ~~~~~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
.. +| ++++++ +| .+..+.|.
T Consensus 71 ~~-----~P--T~~lf~-~g-~~~~~~G~ 90 (100)
T cd02999 71 VG-----FP--TILLFN-ST-PRVRYNGT 90 (100)
T ss_pred ee-----cC--EEEEEc-CC-ceeEecCC
Confidence 87 99 888896 55 56677775
No 66
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.42 E-value=3.8e-12 Score=90.97 Aligned_cols=88 Identities=14% Similarity=0.315 Sum_probs=70.4
Q ss_pred cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030 92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA 171 (215)
Q Consensus 92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 171 (215)
..|+++||+|| ++||++|+...|.+.++.+++++.++.++.|+.| .+..+...|++..
T Consensus 22 ~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d---------------------~~~~l~~~~~V~~ 79 (111)
T cd02963 22 SFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG---------------------HERRLARKLGAHS 79 (111)
T ss_pred cCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc---------------------ccHHHHHHcCCcc
Confidence 36899999999 9999999999999999999998767888888764 3456788899987
Q ss_pred cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
+| +++++ ++|+++....|..+ .+++.+.|+
T Consensus 80 -----~P--t~~i~-~~g~~~~~~~G~~~----~~~l~~~i~ 109 (111)
T cd02963 80 -----VP--AIVGI-INGQVTFYHDSSFT----KQHVVDFVR 109 (111)
T ss_pred -----CC--EEEEE-ECCEEEEEecCCCC----HHHHHHHHh
Confidence 99 88888 59999888888432 344555544
No 67
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.42 E-value=9.5e-13 Score=95.95 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=75.3
Q ss_pred CC-CcEEEEEEcCCCChhhHHHHHHHH---HHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030 93 KG-KPVVVYFYPADETPGCTKQACAFR---DSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG 168 (215)
Q Consensus 93 ~g-k~~ll~f~~a~~C~~C~~~~~~l~---~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g 168 (215)
.| |+++|+|| ++||++|+...+.+. ++.+.+.+ ++.++.|+.|+...+..| ........++...|+
T Consensus 12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~--------~~~~~~~~~l~~~~~ 81 (125)
T cd02951 12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDF--------DGEALSEKELARKYR 81 (125)
T ss_pred cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeecc--------CCCCccHHHHHHHcC
Confidence 57 89999999 999999999999885 56666654 688999988765432221 111234578899999
Q ss_pred CCccCCCCCCccEEEEEcCC-CcEEEEEeCCCCCCccHHHHHHHH
Q 028030 169 VPADFFGSLPGRQTYILDKN-GVVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 169 ~~~~~~g~~p~~~~~lid~~-G~v~~~~~g~~~~~~~~~~il~~l 212 (215)
+.. +| +++++|++ |+++....|... .+.+.++++.+
T Consensus 82 v~~-----~P--t~~~~~~~gg~~~~~~~G~~~-~~~~~~~l~~~ 118 (125)
T cd02951 82 VRF-----TP--TVIFLDPEGGKEIARLPGYLP-PDEFLAYLEYV 118 (125)
T ss_pred Ccc-----cc--EEEEEcCCCCceeEEecCCCC-HHHHHHHHHHH
Confidence 987 89 99999999 899999988543 34455555543
No 68
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.40 E-value=1.3e-12 Score=103.43 Aligned_cols=139 Identities=19% Similarity=0.283 Sum_probs=107.8
Q ss_pred CCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcE--EEEEeCC----CHHHHHHHHH
Q 028030 75 PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAE--VIGISGD----DSSSHKAFAK 147 (215)
Q Consensus 75 P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~--vv~vs~d----~~~~~~~~~~ 147 (215)
-+|+|.|.+|+.++-.|++|||+||+|-++.|...|..++..|.+..++..++ |+. -|+|++| +.+.+++|++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~ 199 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS 199 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence 48999999999999999999999999996666667999999999999998865 443 4566764 6799999999
Q ss_pred HcCCCeEEEE---cCChhHHHHhCCCccC--------CCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 148 KYRLPYTLLS---DEGNKVRKEWGVPADF--------FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 148 ~~~~~~~~~~---d~~~~~~~~~g~~~~~--------~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
++.....-+. ++-.++++.|-|+... +=+.++-.+|||||+|+.+..+.-..+.++..+.|++.+.
T Consensus 200 eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 200 EFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred hcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 9987755443 4456788888876421 2233455789999999999888666666666666666554
No 69
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.40 E-value=4.2e-12 Score=89.37 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=66.2
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.|++++|+|| ++||++|+...|.|.++++++++..+.++.+..|. .++.++|++..
T Consensus 16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~----------------------~~~~~~~~v~~- 71 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT----------------------IDTLKRYRGKC- 71 (102)
T ss_pred cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC----------------------HHHHHHcCCCc-
Confidence 4789999999 99999999999999999999886557788887652 24568889987
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
+| +++++ ++|+++.+..|. . .+++++.|+
T Consensus 72 ----~P--t~~~~-~~g~~~~~~~G~-~----~~~~~~~i~ 100 (102)
T cd02948 72 ----EP--TFLFY-KNGELVAVIRGA-N----APLLNKTIT 100 (102)
T ss_pred ----Cc--EEEEE-ECCEEEEEEecC-C----hHHHHHHHh
Confidence 89 55544 799999988883 2 244555554
No 70
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.39 E-value=3.5e-12 Score=90.96 Aligned_cols=78 Identities=18% Similarity=0.102 Sum_probs=65.2
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.++++||+|| ++||++|+...|.|.++++++++. +.++-|.+ |+..++...|++..
T Consensus 13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDv---------------------D~~~~la~~~~V~~- 68 (114)
T cd02954 13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDI---------------------DEVPDFNKMYELYD- 68 (114)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEEC---------------------CCCHHHHHHcCCCC-
Confidence 3678999999 999999999999999999999754 67787875 55668889999998
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCCCCC
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQP 201 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~ 201 (215)
+| +++++ ++|+++....|..+.
T Consensus 69 ----iP--Tf~~f-k~G~~v~~~~G~~~~ 90 (114)
T cd02954 69 ----PP--TVMFF-FRNKHMKIDLGTGNN 90 (114)
T ss_pred ----CC--EEEEE-ECCEEEEEEcCCCCC
Confidence 99 66666 799999998885543
No 71
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=99.38 E-value=2.3e-12 Score=91.01 Aligned_cols=81 Identities=28% Similarity=0.505 Sum_probs=73.0
Q ss_pred CCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHHHHHHHH
Q 028030 75 PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSSSHKAFA 146 (215)
Q Consensus 75 P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~~~~~~~ 146 (215)
.+|++.|.+|+.++|++++||++||+.. |+-|+.-. ++..|++|+++|+++|++|+++..+ +.+++++++
T Consensus 2 Ydf~~~~~~G~~v~l~~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 2 YDFSAKDIDGKPVSLSKYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GGSEEEBTTSSEEEGGGGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred cceeeeCCCCCEECHHHcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 4799999999999999999999999999 99999888 9999999999999999999999753 568899999
Q ss_pred HH-cCCCeEEEE
Q 028030 147 KK-YRLPYTLLS 157 (215)
Q Consensus 147 ~~-~~~~~~~~~ 157 (215)
.. ++.+|+++.
T Consensus 80 ~~~~~~~F~vf~ 91 (108)
T PF00255_consen 80 KEKFGVTFPVFE 91 (108)
T ss_dssp CHCHT-SSEEBS
T ss_pred HhccCCcccceE
Confidence 76 789999874
No 72
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.38 E-value=8.4e-12 Score=86.53 Aligned_cols=75 Identities=21% Similarity=0.361 Sum_probs=63.5
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
+|+++||+|| ++||++|+...+.+.++++++.+ .+.++.|+.| ....+.+.|++..
T Consensus 11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~---------------------~~~~l~~~~~i~~- 66 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCD---------------------AQPQIAQQFGVQA- 66 (96)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEecc---------------------CCHHHHHHcCCCC-
Confidence 4789999999 99999999999999999998875 3777778754 4457888899987
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| ++++++ +|+++..+.|.
T Consensus 67 ----~P--t~~~~~-~g~~~~~~~g~ 85 (96)
T cd02956 67 ----LP--TVYLFA-AGQPVDGFQGA 85 (96)
T ss_pred ----CC--EEEEEe-CCEEeeeecCC
Confidence 89 888886 99998888884
No 73
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.33 E-value=7e-12 Score=88.37 Aligned_cols=90 Identities=23% Similarity=0.252 Sum_probs=67.9
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 169 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~ 169 (215)
.||++||+|| ++||++|+...+.+ .++.+.+++ ++.++.|..+..+. ....+.+.|++
T Consensus 10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~-----------------~~~~~~~~~~i 70 (104)
T cd02953 10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDP-----------------EITALLKRFGV 70 (104)
T ss_pred cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCH-----------------HHHHHHHHcCC
Confidence 5799999999 99999999998877 577777765 68888888753211 12356677888
Q ss_pred CccCCCCCCccEEEEEcC-CCcEEEEEeCCCCCCccHHHHHHHH
Q 028030 170 PADFFGSLPGRQTYILDK-NGVVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 170 ~~~~~g~~p~~~~~lid~-~G~v~~~~~g~~~~~~~~~~il~~l 212 (215)
.. +| +++++++ +|++...+.|..+ .+++.+.|
T Consensus 71 ~~-----~P--ti~~~~~~~g~~~~~~~G~~~----~~~l~~~l 103 (104)
T cd02953 71 FG-----PP--TYLFYGPGGEPEPLRLPGFLT----ADEFLEAL 103 (104)
T ss_pred CC-----CC--EEEEECCCCCCCCcccccccC----HHHHHHHh
Confidence 87 89 9999998 9999988888542 34455444
No 74
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.6e-11 Score=87.94 Aligned_cols=144 Identities=24% Similarity=0.369 Sum_probs=109.7
Q ss_pred CCCCCCCCCeEEeCC------CC-CeeecCCc-CCCcEEEEEEcCCCChhhH-HHHHHHHHHHHHHHHcCcEE-EEEeCC
Q 028030 68 VSKGQAPPSFTLKDQ------EG-RNVSLSKF-KGKPVVVYFYPADETPGCT-KQACAFRDSYEKFKKAGAEV-IGISGD 137 (215)
Q Consensus 68 ~~~g~~~P~f~l~~~------~g-~~~~l~~~-~gk~~ll~f~~a~~C~~C~-~~~~~l~~l~~~~~~~~v~v-v~vs~d 137 (215)
+.+|+++|..++... +| +.++..++ +||.++|+=.|+.+.|.|. .++|...+++++++++|+.= +.|++|
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 578999999888754 22 44555665 8999999999999999997 49999999999999999874 458999
Q ss_pred CHHHHHHHHHHcCCC--eEEEEcCChhHHHHhCCCccCC--C-CCCccEEEEEcCCCcEEEEEeCCCCC---CccHHHHH
Q 028030 138 DSSSHKAFAKKYRLP--YTLLSDEGNKVRKEWGVPADFF--G-SLPGRQTYILDKNGVVQLIYNNQFQP---EKHIDETL 209 (215)
Q Consensus 138 ~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~g~~~~~~--g-~~p~~~~~lid~~G~v~~~~~g~~~~---~~~~~~il 209 (215)
|...+.+|.+..+.. ..++.|.++++.+.+|+..+.. | .+.+-++-.+-+||+|...+.-+... -...+.+|
T Consensus 83 D~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV~nGvV~~~~iE~p~~~~~vS~a~~mL 162 (165)
T COG0678 83 DAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVVENGVVEKLFIEPPGDPFTVSSADTML 162 (165)
T ss_pred cHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEEeCCeEEEEEecCCCCceeecCHHHHH
Confidence 999999999988876 8889999999999999975421 1 23333444444799999887543211 13445555
Q ss_pred HH
Q 028030 210 KF 211 (215)
Q Consensus 210 ~~ 211 (215)
+.
T Consensus 163 ~~ 164 (165)
T COG0678 163 AQ 164 (165)
T ss_pred hc
Confidence 43
No 75
>PRK09381 trxA thioredoxin; Provisional
Probab=99.28 E-value=3.7e-11 Score=85.33 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=63.7
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.+++++|+|| ++||++|+...|.++++++++.+ ++.++.|..|. ...+...|++..
T Consensus 20 ~~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~~- 75 (109)
T PRK09381 20 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ---------------------NPGTAPKYGIRG- 75 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCC---------------------ChhHHHhCCCCc-
Confidence 3689999999 99999999999999999999986 48888887643 334667888887
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQ 200 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~ 200 (215)
+| +++++ ++|+++..+.|...
T Consensus 76 ----~P--t~~~~-~~G~~~~~~~G~~~ 96 (109)
T PRK09381 76 ----IP--TLLLF-KNGEVAATKVGALS 96 (109)
T ss_pred ----CC--EEEEE-eCCeEEEEecCCCC
Confidence 89 77777 69999999888643
No 76
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.26 E-value=8.2e-11 Score=82.34 Aligned_cols=85 Identities=21% Similarity=0.375 Sum_probs=63.9
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
+|+ +||.|| ++||++|+...|.+.+++++++..++.+..|..+ .+..+...|++..
T Consensus 16 ~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~~~~~~~i~~- 71 (101)
T cd02994 16 EGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVT---------------------QEPGLSGRFFVTA- 71 (101)
T ss_pred CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc---------------------CCHhHHHHcCCcc-
Confidence 566 689999 9999999999999999998876556777777643 3345778889987
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
+| +++++ ++|++ ..+.|.. ..+++.+.++
T Consensus 72 ----~P--t~~~~-~~g~~-~~~~G~~----~~~~l~~~i~ 100 (101)
T cd02994 72 ----LP--TIYHA-KDGVF-RRYQGPR----DKEDLISFIE 100 (101)
T ss_pred ----cC--EEEEe-CCCCE-EEecCCC----CHHHHHHHHh
Confidence 99 77665 89986 5677743 3455666554
No 77
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.25 E-value=3.6e-12 Score=90.88 Aligned_cols=96 Identities=24% Similarity=0.293 Sum_probs=67.6
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHH---HHHHcCcEEEEEeCCCHH-HHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYE---KFKKAGAEVIGISGDDSS-SHKAFAKKYRLPYTLLSDEGNKVRKEWG 168 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~---~~~~~~v~vv~vs~d~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~g 168 (215)
.||++||+|| ..||++|++..+.+.++.+ .++ .++.++.+..++.+ ....+++..+.+... ....++...||
T Consensus 4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 79 (112)
T PF13098_consen 4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLK-DDFQVIFVNIDDSRDESEAVLDFDGQKNVR--LSNKELAQRYG 79 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEH-CECEEEECESHSHHHHHHHHHSHTCHSSCH--HHHHHHHHHTT
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhh-cCeEEEEEecCCcccccccccccccchhhh--HHHHHHHHHcC
Confidence 5799999999 9999999988888876533 222 35889999987664 344555544432111 22357999999
Q ss_pred CCccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030 169 VPADFFGSLPGRQTYILDKNGVVQLIYNNQF 199 (215)
Q Consensus 169 ~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~ 199 (215)
+.+ .| +++++|++|+++....|..
T Consensus 80 v~g-----tP--t~~~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 80 VNG-----TP--TIVFLDKDGKIVYRIPGYL 103 (112)
T ss_dssp --S-----SS--EEEECTTTSCEEEEEESS-
T ss_pred CCc-----cC--EEEEEcCCCCEEEEecCCC
Confidence 998 88 9999999999999888854
No 78
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.23 E-value=9.3e-11 Score=83.05 Aligned_cols=88 Identities=15% Similarity=0.288 Sum_probs=68.0
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.|+++||.|| ++||++|+...|.+.++++++.+ .+.++.|+.|.. ++.++...|++..
T Consensus 17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~-------------------~~~~~~~~~~i~~- 74 (109)
T cd03002 17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED-------------------KNKPLCGKYGVQG- 74 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc-------------------ccHHHHHHcCCCc-
Confidence 4788999999 99999999999999999998875 488888887642 2457788899987
Q ss_pred CCCCCCccEEEEEcCCCc----EEEEEeCCCCCCccHHHHHHHH
Q 028030 173 FFGSLPGRQTYILDKNGV----VQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~----v~~~~~g~~~~~~~~~~il~~l 212 (215)
+| +++++++++. +...+.|. ...+++.+.|
T Consensus 75 ----~P--t~~~~~~~~~~~~~~~~~~~G~----~~~~~l~~fi 108 (109)
T cd03002 75 ----FP--TLKVFRPPKKASKHAVEDYNGE----RSAKAIVDFV 108 (109)
T ss_pred ----CC--EEEEEeCCCcccccccccccCc----cCHHHHHHHh
Confidence 89 9999987773 44455553 3455666554
No 79
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.23 E-value=2.5e-11 Score=85.06 Aligned_cols=76 Identities=17% Similarity=0.335 Sum_probs=62.1
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.+++++|.|| ++||++|+...|.+.++++++++. +.+..|+.| ....+.+.|++..
T Consensus 17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~---------------------~~~~~~~~~~v~~- 72 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCG---------------------DDRMLCRSQGVNS- 72 (101)
T ss_pred CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCC---------------------ccHHHHHHcCCCc-
Confidence 4689999999 999999999999999999999854 788888764 3346777888887
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQF 199 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~~ 199 (215)
+| +++++ ++|+....+.|..
T Consensus 73 ----~P--t~~~~-~~g~~~~~~~G~~ 92 (101)
T cd03003 73 ----YP--SLYVF-PSGMNPEKYYGDR 92 (101)
T ss_pred ----cC--EEEEE-cCCCCcccCCCCC
Confidence 89 77666 7898877777743
No 80
>PHA02278 thioredoxin-like protein
Probab=99.23 E-value=6e-11 Score=83.57 Aligned_cols=80 Identities=19% Similarity=0.200 Sum_probs=62.8
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
+++++||+|| |+||++|+...|.|.++.+++.. .+.++-|.+|..+. | ..++.+.|++..
T Consensus 13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~----------------d-~~~l~~~~~I~~- 72 (103)
T PHA02278 13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDV----------------D-REKAVKLFDIMS- 72 (103)
T ss_pred CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCcccc----------------c-cHHHHHHCCCcc-
Confidence 5789999999 99999999999999999877543 36777777654321 1 246888999997
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQF 199 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~~ 199 (215)
+| +++++ ++|+.+.+..|..
T Consensus 73 ----iP--T~i~f-k~G~~v~~~~G~~ 92 (103)
T PHA02278 73 ----TP--VLIGY-KDGQLVKKYEDQV 92 (103)
T ss_pred ----cc--EEEEE-ECCEEEEEEeCCC
Confidence 99 56555 7999999998853
No 81
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.22 E-value=1.7e-10 Score=82.07 Aligned_cols=88 Identities=20% Similarity=0.388 Sum_probs=67.1
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHH-HhCCCc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRK-EWGVPA 171 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~g~~~ 171 (215)
+||+++|.|| ++||++|+...|.+.++++++++.++.+..|..|.. +..+.. .|++..
T Consensus 20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--------------------~~~~~~~~~~v~~ 78 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--------------------QREFAKEELQLKS 78 (109)
T ss_pred cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--------------------chhhHHhhcCCCc
Confidence 4799999999 999999999999999999999876788888876541 123333 478876
Q ss_pred cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHH
Q 028030 172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKF 211 (215)
Q Consensus 172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~ 211 (215)
+| ++++++++++....+.|.. .+.+++++.
T Consensus 79 -----~P--ti~~f~~~~~~~~~y~g~~---~~~~~l~~f 108 (109)
T cd02993 79 -----FP--TILFFPKNSRQPIKYPSEQ---RDVDSLLMF 108 (109)
T ss_pred -----CC--EEEEEcCCCCCceeccCCC---CCHHHHHhh
Confidence 89 8999988887777777731 344555443
No 82
>PRK10996 thioredoxin 2; Provisional
Probab=99.22 E-value=1.3e-10 Score=86.32 Aligned_cols=76 Identities=21% Similarity=0.350 Sum_probs=63.2
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.+|+++|+|| ++||++|+...+.|.++++++.+ ++.++.|..+ ...++.+.|++..
T Consensus 51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~---------------------~~~~l~~~~~V~~- 106 (139)
T PRK10996 51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTE---------------------AERELSARFRIRS- 106 (139)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCC---------------------CCHHHHHhcCCCc-
Confidence 4789999999 99999999999999999988775 4888888653 3457888999987
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQF 199 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~~ 199 (215)
+| +++++ ++|+++..+.|..
T Consensus 107 ----~P--tlii~-~~G~~v~~~~G~~ 126 (139)
T PRK10996 107 ----IP--TIMIF-KNGQVVDMLNGAV 126 (139)
T ss_pred ----cC--EEEEE-ECCEEEEEEcCCC
Confidence 99 66666 5999999988853
No 83
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.21 E-value=1.8e-10 Score=85.23 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=60.2
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.++++||+|| ++||++|+...|.|.++++++++. +.|+-|.+ |+..++...|++..
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDV---------------------De~~dla~~y~I~~- 77 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDI---------------------TEVPDFNTMYELYD- 77 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEEC---------------------CCCHHHHHHcCccC-
Confidence 4689999999 999999999999999999998754 66677775 55667888899985
Q ss_pred CCCCCCccEEEEEcCCCc-EEEEEeCC
Q 028030 173 FFGSLPGRQTYILDKNGV-VQLIYNNQ 198 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~-v~~~~~g~ 198 (215)
.| .++++=++|+ .+++..|.
T Consensus 78 ----~~--t~~~ffk~g~~~vd~~tG~ 98 (142)
T PLN00410 78 ----PC--TVMFFFRNKHIMIDLGTGN 98 (142)
T ss_pred ----CC--cEEEEEECCeEEEEEeccc
Confidence 55 4554447888 77777773
No 84
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.2e-10 Score=82.24 Aligned_cols=73 Identities=29% Similarity=0.315 Sum_probs=62.4
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
+|.++|+|+ ++||++|+...|.+.+|+.+|.+ +.|+.|++|. ...+...|++..
T Consensus 21 ~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---------------------~~~~~~~~~V~~-- 74 (106)
T KOG0907|consen 21 DKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---------------------LEEVAKEFNVKA-- 74 (106)
T ss_pred CCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---------------------CHhHHHhcCceE--
Confidence 589999999 99999999999999999999995 8999998754 356777888887
Q ss_pred CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 174 FGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 174 ~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| +.+++ ++|+.+..+.|.
T Consensus 75 ---~P--Tf~f~-k~g~~~~~~vGa 93 (106)
T KOG0907|consen 75 ---MP--TFVFY-KGGEEVDEVVGA 93 (106)
T ss_pred ---ee--EEEEE-ECCEEEEEEecC
Confidence 99 45444 899999999884
No 85
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.20 E-value=2.1e-10 Score=80.66 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=63.3
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.+++++|.|| ++||++|+...|.+.++.+++++ ++.+..|+.+ ...++.+.|++..
T Consensus 18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~---------------------~~~~~~~~~~i~~- 73 (104)
T cd03004 18 RKEPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQ---------------------KYESLCQQANIRA- 73 (104)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECC---------------------chHHHHHHcCCCc-
Confidence 3679999999 99999999999999999999864 4788888764 3446778889987
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQF 199 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~~ 199 (215)
+| ++++++++|+....+.|..
T Consensus 74 ----~P--t~~~~~~g~~~~~~~~G~~ 94 (104)
T cd03004 74 ----YP--TIRLYPGNASKYHSYNGWH 94 (104)
T ss_pred ----cc--EEEEEcCCCCCceEccCCC
Confidence 89 8888876668888888853
No 86
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=9.7e-11 Score=95.22 Aligned_cols=86 Identities=21% Similarity=0.374 Sum_probs=71.6
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
+-++|||+|| ++||++|+..+|.|.++.++|+++ +.+.-|++ |.+..++..||++.
T Consensus 42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~---------------------D~~p~vAaqfgiqs- 97 (304)
T COG3118 42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNC---------------------DAEPMVAAQFGVQS- 97 (304)
T ss_pred cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCCc-eEEEEecC---------------------CcchhHHHHhCcCc-
Confidence 4579999999 999999999999999999999975 88877875 56678899999998
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK 210 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~ 210 (215)
+| ++|++ ++|+-+..|.|.. +++-+.+.++
T Consensus 98 ----IP--tV~af-~dGqpVdgF~G~q-Pesqlr~~ld 127 (304)
T COG3118 98 ----IP--TVYAF-KDGQPVDGFQGAQ-PESQLRQFLD 127 (304)
T ss_pred ----CC--eEEEe-eCCcCccccCCCC-cHHHHHHHHH
Confidence 99 88888 8999999999964 3433444443
No 87
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.18 E-value=1.8e-10 Score=80.46 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=61.0
Q ss_pred CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH--cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKK--AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~--~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
++++|+|| ++||++|+...|.+.++++++++ .++.++.|..+ .+..+.+.|++..
T Consensus 17 ~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~---------------------~~~~~~~~~~v~~- 73 (102)
T cd03005 17 GNHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT---------------------QHRELCSEFQVRG- 73 (102)
T ss_pred CCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC---------------------CChhhHhhcCCCc-
Confidence 35999999 99999999999999999999986 24777777643 3446777888887
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQF 199 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~~ 199 (215)
+| +++++ ++|+.+..+.|..
T Consensus 74 ----~P--t~~~~-~~g~~~~~~~G~~ 93 (102)
T cd03005 74 ----YP--TLLLF-KDGEKVDKYKGTR 93 (102)
T ss_pred ----CC--EEEEE-eCCCeeeEeeCCC
Confidence 89 88888 6888888888854
No 88
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.17 E-value=4.7e-10 Score=78.03 Aligned_cols=76 Identities=11% Similarity=0.203 Sum_probs=62.7
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.+|+++|+|| ++||+.|+...+.+.++.+++.+ ++.++.|+.| .+.++...+++..
T Consensus 12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d---------------------~~~~l~~~~~v~~- 67 (97)
T cd02949 12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDID---------------------EDQEIAEAAGIMG- 67 (97)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECC---------------------CCHHHHHHCCCee-
Confidence 4689999999 99999999999999999988875 4777777754 3346777888876
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQF 199 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~~ 199 (215)
+| ++++++ +|+++....|..
T Consensus 68 ----vP--t~~i~~-~g~~v~~~~g~~ 87 (97)
T cd02949 68 ----TP--TVQFFK-DKELVKEISGVK 87 (97)
T ss_pred ----cc--EEEEEE-CCeEEEEEeCCc
Confidence 88 888885 899998888843
No 89
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.16 E-value=4.7e-10 Score=79.03 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=57.3
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcC--cEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG--AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
++++++|.|| ++||++|+...|.+.++++++++.+ +.+..+..+ ....+.+.|++.
T Consensus 14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~---------------------~~~~~~~~~~I~ 71 (104)
T cd03000 14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT---------------------AYSSIASEFGVR 71 (104)
T ss_pred cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc---------------------cCHhHHhhcCCc
Confidence 4579999999 9999999999999999999997654 555555543 234677889998
Q ss_pred ccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 171 ADFFGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
. +| ++++++ +|. ...+.|.
T Consensus 72 ~-----~P--t~~l~~-~~~-~~~~~G~ 90 (104)
T cd03000 72 G-----YP--TIKLLK-GDL-AYNYRGP 90 (104)
T ss_pred c-----cc--EEEEEc-CCC-ceeecCC
Confidence 7 89 888884 554 4556664
No 90
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.16 E-value=5.5e-10 Score=78.20 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=61.5
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA 171 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 171 (215)
++++++|.|| ++||++|+...+.+.++.+++++. .+.++.+..+. +....+.+.|++..
T Consensus 16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-------------------~~~~~~~~~~~i~~ 75 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK-------------------PEHDALKEEYNVKG 75 (104)
T ss_pred hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC-------------------CccHHHHHhCCCcc
Confidence 4679999999 999999999999999999988753 35666665543 12567888899986
Q ss_pred cCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030 172 DFFGSLPGRQTYILDKNGVVQLIYNNQF 199 (215)
Q Consensus 172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~ 199 (215)
+| +++ +.++|+++..+.|..
T Consensus 76 -----~P--t~~-~~~~g~~~~~~~g~~ 95 (104)
T cd02997 76 -----FP--TFK-YFENGKFVEKYEGER 95 (104)
T ss_pred -----cc--EEE-EEeCCCeeEEeCCCC
Confidence 89 554 557899888887754
No 91
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.15 E-value=2.9e-10 Score=81.40 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=60.7
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHH-HHhCCCc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVR-KEWGVPA 171 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~g~~~ 171 (215)
.++++||.|| ++||++|+...|.+.++++++++. +.++.|+.| .+..+. +.|++..
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d---------------------~~~~l~~~~~~I~~ 84 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCW---------------------WPQGKCRKQKHFFY 84 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECC---------------------CChHHHHHhcCCcc
Confidence 4689999999 999999999999999999999764 778888764 334555 4788887
Q ss_pred cCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030 172 DFFGSLPGRQTYILDKNGVVQLIYNNQF 199 (215)
Q Consensus 172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~ 199 (215)
+| ++.++ ++|+....+.|..
T Consensus 85 -----~P--Tl~lf-~~g~~~~~y~G~~ 104 (113)
T cd03006 85 -----FP--VIHLY-YRSRGPIEYKGPM 104 (113)
T ss_pred -----cC--EEEEE-ECCccceEEeCCC
Confidence 99 77777 7888777777753
No 92
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.14 E-value=5.5e-10 Score=81.12 Aligned_cols=88 Identities=13% Similarity=0.241 Sum_probs=61.9
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH--------HHHHHHHHHcCCCeEEEEcCChhHH
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS--------SSHKAFAKKYRLPYTLLSDEGNKVR 164 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~--------~~~~~~~~~~~~~~~~~~d~~~~~~ 164 (215)
.|+.++|+|+ ++|||+|+...|.|.++.++ .++.+..|++|.. +++.++.+.+++..
T Consensus 22 ~~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~----------- 86 (122)
T TIGR01295 22 KKETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPT----------- 86 (122)
T ss_pred cCCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcc-----------
Confidence 3678899999 99999999999999999887 3477888887632 24445555544431
Q ss_pred HHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHH
Q 028030 165 KEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206 (215)
Q Consensus 165 ~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~ 206 (215)
++.+ +| +++++ ++|+.+.+..|...+.+.++
T Consensus 87 ---~i~~-----~P--T~v~~-k~Gk~v~~~~G~~~~~~~l~ 117 (122)
T TIGR01295 87 ---SFMG-----TP--TFVHI-TDGKQVSVRCGSSTTAQELQ 117 (122)
T ss_pred ---cCCC-----CC--EEEEE-eCCeEEEEEeCCCCCHHHHH
Confidence 3333 88 66666 89999999988543333333
No 93
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.13 E-value=1e-09 Score=75.99 Aligned_cols=74 Identities=16% Similarity=0.292 Sum_probs=60.5
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
+++++|+|| ++||++|+...+.|.++.+++. .++.++.|..+ ....+.+.|++..
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~~-~~i~~~~vd~~---------------------~~~~~~~~~~i~~-- 68 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEAF-PSVLFLSIEAE---------------------ELPEISEKFEITA-- 68 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhC-CceEEEEEccc---------------------cCHHHHHhcCCcc--
Confidence 689999999 9999999999999999998873 35777777542 3456788899987
Q ss_pred CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 174 FGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 174 ~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| +++++ ++|+++....|.
T Consensus 69 ---~P--t~~~~-~~g~~~~~~~g~ 87 (97)
T cd02984 69 ---VP--TFVFF-RNGTIVDRVSGA 87 (97)
T ss_pred ---cc--EEEEE-ECCEEEEEEeCC
Confidence 89 77777 589999888884
No 94
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.12 E-value=1.8e-10 Score=83.03 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=55.6
Q ss_pred CcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 91 KFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 91 ~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
...||++||+|| ++||++|+...+.+.+..+.... +..++.|.+|... ......|++.
T Consensus 16 ~~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~--------------------~~~~~~~~~~ 73 (117)
T cd02959 16 KDSGKPLMLLIH-KTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDE--------------------EPKDEEFSPD 73 (117)
T ss_pred HHcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCC--------------------CchhhhcccC
Confidence 346899999999 99999999999999997665543 3456666554321 0112244443
Q ss_pred ccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030 171 ADFFGSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 171 ~~~~g~~p~~~~~lid~~G~v~~~~~g 197 (215)
+ +.+| +++++|++|+++.++.+
T Consensus 74 g---~~vP--t~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 74 G---GYIP--RILFLDPSGDVHPEIIN 95 (117)
T ss_pred C---Cccc--eEEEECCCCCCchhhcc
Confidence 2 1278 99999999999875433
No 95
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.12 E-value=1.5e-09 Score=75.66 Aligned_cols=85 Identities=28% Similarity=0.521 Sum_probs=69.2
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
++++||.|| +.||++|+...|.+.++.+++++ ++.++.|.. +....+.+.|++..
T Consensus 17 ~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~---------------------~~~~~l~~~~~v~~-- 71 (103)
T PF00085_consen 17 DKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDC---------------------DENKELCKKYGVKS-- 71 (103)
T ss_dssp SSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEET---------------------TTSHHHHHHTTCSS--
T ss_pred CCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhh---------------------hccchhhhccCCCC--
Confidence 689999999 99999999999999999999987 688888875 34467888999987
Q ss_pred CCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 174 FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 174 ~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
+| +++++ ++|+....+.|.. ..+++.+.|+
T Consensus 72 ---~P--t~~~~-~~g~~~~~~~g~~----~~~~l~~~i~ 101 (103)
T PF00085_consen 72 ---VP--TIIFF-KNGKEVKRYNGPR----NAESLIEFIE 101 (103)
T ss_dssp ---SS--EEEEE-ETTEEEEEEESSS----SHHHHHHHHH
T ss_pred ---CC--EEEEE-ECCcEEEEEECCC----CHHHHHHHHH
Confidence 99 77766 6888888888853 3455666555
No 96
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.11 E-value=1e-09 Score=77.79 Aligned_cols=85 Identities=19% Similarity=0.316 Sum_probs=62.8
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-----CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-----GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW 167 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-----~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (215)
.++++||.|| ++||++|+...|.+.++++++++. .+.+..|.. |.+..+.++|
T Consensus 17 ~~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~---------------------d~~~~l~~~~ 74 (108)
T cd02996 17 SAELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC---------------------DKESDIADRY 74 (108)
T ss_pred cCCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC---------------------CCCHHHHHhC
Confidence 3678999999 999999999999999999887642 245555554 4556788899
Q ss_pred CCCccCCCCCCccEEEEEcCCCcE-EEEEeCCCCCCccHHHHHHH
Q 028030 168 GVPADFFGSLPGRQTYILDKNGVV-QLIYNNQFQPEKHIDETLKF 211 (215)
Q Consensus 168 g~~~~~~g~~p~~~~~lid~~G~v-~~~~~g~~~~~~~~~~il~~ 211 (215)
++.. +| +++++ ++|++ ...+.|. ...+++.+.
T Consensus 75 ~v~~-----~P--tl~~~-~~g~~~~~~~~g~----~~~~~l~~f 107 (108)
T cd02996 75 RINK-----YP--TLKLF-RNGMMMKREYRGQ----RSVEALAEF 107 (108)
T ss_pred CCCc-----CC--EEEEE-eCCcCcceecCCC----CCHHHHHhh
Confidence 9987 99 77777 78884 3555563 344555543
No 97
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.10 E-value=6.3e-10 Score=77.48 Aligned_cols=87 Identities=17% Similarity=0.320 Sum_probs=66.1
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcC-cEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG-AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA 171 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~-v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 171 (215)
++++++|.|| ++||+.|+...+.++++++.++..+ +.++.+.. |....+...|++..
T Consensus 12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~---------------------~~~~~~~~~~~i~~ 69 (102)
T TIGR01126 12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA---------------------TAEKDLASRFGVSG 69 (102)
T ss_pred cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc---------------------cchHHHHHhCCCCc
Confidence 6899999999 9999999999999999998887653 66665654 33457778899987
Q ss_pred cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
+| +++++++++. ...+.|... .+++...|+
T Consensus 70 -----~P--~~~~~~~~~~-~~~~~g~~~----~~~l~~~i~ 99 (102)
T TIGR01126 70 -----FP--TIKFFPKGKK-PVDYEGGRD----LEAIVEFVN 99 (102)
T ss_pred -----CC--EEEEecCCCc-ceeecCCCC----HHHHHHHHH
Confidence 89 9999988887 556777432 344444443
No 98
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.10 E-value=1.7e-09 Score=76.82 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=59.7
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.+|++||.|+ ++||++|+..-|.|.++++++++. +.++.|.+ |+..++...|++..
T Consensus 13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDV---------------------Dev~dva~~y~I~a- 68 (114)
T cd02986 13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDV---------------------DKVPVYTQYFDISY- 68 (114)
T ss_pred CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEec---------------------cccHHHHHhcCcee-
Confidence 5799999999 999999999999999999999743 77777876 45567788888886
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| +++++ ++|+-.....|.
T Consensus 69 ----mP--tfvff-kngkh~~~d~gt 87 (114)
T cd02986 69 ----IP--STIFF-FNGQHMKVDYGS 87 (114)
T ss_pred ----Cc--EEEEE-ECCcEEEEecCC
Confidence 88 55555 677766665553
No 99
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.10 E-value=7.1e-10 Score=83.40 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=60.3
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
+++++||+|| ++||++|+...|.++++++++.+.++.++.|+.|... ++.+.|++...
T Consensus 46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~---------------------~la~~~~V~~~ 103 (152)
T cd02962 46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP---------------------NVAEKFRVSTS 103 (152)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH---------------------HHHHHcCceec
Confidence 4578999999 9999999999999999999998667999999875443 34444444320
Q ss_pred -CCCCCCccEEEEEcCCCcEEEEEeC
Q 028030 173 -FFGSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 173 -~~g~~p~~~~~lid~~G~v~~~~~g 197 (215)
....+| +++++ ++|+.+.+..|
T Consensus 104 ~~v~~~P--T~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 104 PLSKQLP--TIILF-QGGKEVARRPY 126 (152)
T ss_pred CCcCCCC--EEEEE-ECCEEEEEEec
Confidence 001278 77766 59999998887
No 100
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=99.07 E-value=2.5e-09 Score=84.89 Aligned_cols=137 Identities=20% Similarity=0.343 Sum_probs=98.8
Q ss_pred ccCCCCCCCCCeEEeCCCCCe-eecCCc-C-CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEEe----CC
Q 028030 66 AKVSKGQAPPSFTLKDQEGRN-VSLSKF-K-GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGIS----GD 137 (215)
Q Consensus 66 ~~~~~g~~~P~f~l~~~~g~~-~~l~~~-~-gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~vs----~d 137 (215)
....+|..+|+..+.+.+|+. .++-|+ + ++++||+|. +..||+-...+..++++.++|.+. ++-+|.|. .|
T Consensus 71 ~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFG-S~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsD 149 (237)
T PF00837_consen 71 KEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFG-SCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSD 149 (237)
T ss_pred cceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcc-cccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCC
Confidence 456789999999999999998 899998 4 589999999 777999999999999999999974 34444442 12
Q ss_pred ------C----------HH--HHHHHHHHcCCCeEEEEcC-ChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEe-C
Q 028030 138 ------D----------SS--SHKAFAKKYRLPYTLLSDE-GNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYN-N 197 (215)
Q Consensus 138 ------~----------~~--~~~~~~~~~~~~~~~~~d~-~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~-g 197 (215)
+ ++ .+.+.+.+.....+++.|. ++...++||.. |. +.||| .+|||++... |
T Consensus 150 gW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA~-------Pe-RlyIi-~~gkv~Y~Gg~G 220 (237)
T PF00837_consen 150 GWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYGAL-------PE-RLYII-QDGKVVYKGGPG 220 (237)
T ss_pred CccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhCCC-------cc-eEEEE-ECCEEEEeCCCC
Confidence 1 11 2333444444678888775 67788889885 43 57777 4999987753 3
Q ss_pred CCCCCccHHHHHHHHhc
Q 028030 198 QFQPEKHIDETLKFLQS 214 (215)
Q Consensus 198 ~~~~~~~~~~il~~l~~ 214 (215)
+. .=+.+++.+.|++
T Consensus 221 P~--~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 221 PF--GYSPEELREWLEK 235 (237)
T ss_pred CC--cCCHHHHHHHHHh
Confidence 32 3345666666654
No 101
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.07 E-value=4.7e-10 Score=80.82 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=63.4
Q ss_pred CCCcEEEEEEcC-------CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 028030 93 KGKPVVVYFYPA-------DETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRK 165 (215)
Q Consensus 93 ~gk~~ll~f~~a-------~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 165 (215)
+|++++|+|| | +||++|+...|.|+++.+++++ ++.++-|.+|+... ..|.+.++..
T Consensus 20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~--------------w~d~~~~~~~ 83 (119)
T cd02952 20 EGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPY--------------WRDPNNPFRT 83 (119)
T ss_pred CCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCccc--------------ccCcchhhHh
Confidence 5789999999 9 9999999999999999999874 48999998876542 2345678888
Q ss_pred HhCCC-ccCCCCCCccEEEEEcCCCcEEE
Q 028030 166 EWGVP-ADFFGSLPGRQTYILDKNGVVQL 193 (215)
Q Consensus 166 ~~g~~-~~~~g~~p~~~~~lid~~G~v~~ 193 (215)
.|++. . +| ++++++..++++.
T Consensus 84 ~~~I~~~-----iP--T~~~~~~~~~l~~ 105 (119)
T cd02952 84 DPKLTTG-----VP--TLLRWKTPQRLVE 105 (119)
T ss_pred ccCcccC-----CC--EEEEEcCCceecc
Confidence 89997 6 99 8888876666543
No 102
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.05 E-value=1.4e-09 Score=86.75 Aligned_cols=76 Identities=20% Similarity=0.297 Sum_probs=60.7
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
+++++|+|| ++||++|+...|.+.++++++++. +.+..|..+ .+.++.+.|++..
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~---------------------~~~~l~~~~~I~~-- 106 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKGQ-VNVADLDAT---------------------RALNLAKRFAIKG-- 106 (224)
T ss_pred CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCc---------------------ccHHHHHHcCCCc--
Confidence 578999999 999999999999999999998753 666555432 3457888999987
Q ss_pred CCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030 174 FGSLPGRQTYILDKNGVVQLIYNNQFQ 200 (215)
Q Consensus 174 ~g~~p~~~~~lid~~G~v~~~~~g~~~ 200 (215)
+| ++++++ +|+++....|..+
T Consensus 107 ---~P--Tl~~f~-~G~~v~~~~G~~s 127 (224)
T PTZ00443 107 ---YP--TLLLFD-KGKMYQYEGGDRS 127 (224)
T ss_pred ---CC--EEEEEE-CCEEEEeeCCCCC
Confidence 99 888887 8888877666433
No 103
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.05 E-value=2e-09 Score=74.63 Aligned_cols=75 Identities=19% Similarity=0.349 Sum_probs=61.2
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
++.++|.|| ++||+.|+...+.|+++.+++.+ ++.++.|..+. +..+.+.|++..
T Consensus 14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~~-- 68 (101)
T TIGR01068 14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE---------------------NPDIAAKYGIRS-- 68 (101)
T ss_pred CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC---------------------CHHHHHHcCCCc--
Confidence 579999999 99999999999999999988874 48888887543 345667888886
Q ss_pred CCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030 174 FGSLPGRQTYILDKNGVVQLIYNNQF 199 (215)
Q Consensus 174 ~g~~p~~~~~lid~~G~v~~~~~g~~ 199 (215)
+| +++++ ++|++.....|..
T Consensus 69 ---~P--~~~~~-~~g~~~~~~~g~~ 88 (101)
T TIGR01068 69 ---IP--TLLLF-KNGKEVDRSVGAL 88 (101)
T ss_pred ---CC--EEEEE-eCCcEeeeecCCC
Confidence 88 88888 6888888777753
No 104
>PTZ00051 thioredoxin; Provisional
Probab=99.05 E-value=1.6e-09 Score=75.27 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=60.4
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.+++++|+|| ++||++|+...+.+.++++++. ++.++.|..+ ....+.+.|++..
T Consensus 17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~---------------------~~~~~~~~~~v~~- 71 (98)
T PTZ00051 17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVD---------------------ELSEVAEKENITS- 71 (98)
T ss_pred cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECc---------------------chHHHHHHCCCce-
Confidence 4689999999 9999999999999999988765 4777777653 3357888899987
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| +++ +.++|+++..+.|.
T Consensus 72 ----~P--t~~-~~~~g~~~~~~~G~ 90 (98)
T PTZ00051 72 ----MP--TFK-VFKNGSVVDTLLGA 90 (98)
T ss_pred ----ee--EEE-EEeCCeEEEEEeCC
Confidence 99 654 55899999999884
No 105
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.04 E-value=1.3e-09 Score=78.79 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=60.0
Q ss_pred CcEEEEEEcCCCChh--hH--HHHHHHHHHHHHHH-HcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030 95 KPVVVYFYPADETPG--CT--KQACAFRDSYEKFK-KAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 169 (215)
Q Consensus 95 k~~ll~f~~a~~C~~--C~--~~~~~l~~l~~~~~-~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~ 169 (215)
.++|++|| ++||++ |+ ...|.|.++++++- +.++.|+-|++ |.+.+++..||+
T Consensus 28 ~~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~---------------------d~~~~La~~~~I 85 (120)
T cd03065 28 VLCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDS---------------------KKDAKVAKKLGL 85 (120)
T ss_pred ceEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeC---------------------CCCHHHHHHcCC
Confidence 57888888 999988 99 77888999888872 33688888875 556789999999
Q ss_pred CccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030 170 PADFFGSLPGRQTYILDKNGVVQLIYNNQFQ 200 (215)
Q Consensus 170 ~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~ 200 (215)
.+ +| +++++ ++|+++. +.|...
T Consensus 86 ~~-----iP--Tl~lf-k~G~~v~-~~G~~~ 107 (120)
T cd03065 86 DE-----ED--SIYVF-KDDEVIE-YDGEFA 107 (120)
T ss_pred cc-----cc--EEEEE-ECCEEEE-eeCCCC
Confidence 98 99 77777 6999887 777543
No 106
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.02 E-value=2.3e-09 Score=74.98 Aligned_cols=78 Identities=21% Similarity=0.370 Sum_probs=62.5
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK-AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA 171 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 171 (215)
.+++++|.|| ++||++|+...+.+.++.++++. .++.++.+..+.+ ...+.+.|++..
T Consensus 17 ~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--------------------~~~~~~~~~i~~ 75 (105)
T cd02998 17 DKKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--------------------NKDLAKKYGVSG 75 (105)
T ss_pred CCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--------------------chhhHHhCCCCC
Confidence 3579999999 99999999999999999999873 3577777765442 357788888886
Q ss_pred cCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 172 DFFGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 172 ~~~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| ++++++++|+....+.|.
T Consensus 76 -----~P--~~~~~~~~~~~~~~~~g~ 95 (105)
T cd02998 76 -----FP--TLKFFPKGSTEPVKYEGG 95 (105)
T ss_pred -----cC--EEEEEeCCCCCccccCCc
Confidence 88 999998887777677664
No 107
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.02 E-value=2.6e-09 Score=75.79 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=63.8
Q ss_pred CCCcEEEEEEcCCC--ChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 93 KGKPVVVYFYPADE--TPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 93 ~gk~~ll~f~~a~~--C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
.|.++||.|| +.| |++|....|.|.++.++|+++ +.++-|.. |.+.+++..|++.
T Consensus 26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdi---------------------d~~~~la~~f~V~ 82 (111)
T cd02965 26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGR---------------------ADEQALAARFGVL 82 (111)
T ss_pred CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEEC---------------------CCCHHHHHHcCCC
Confidence 5789999999 997 999999999999999999865 67777765 4556889999999
Q ss_pred ccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030 171 ADFFGSLPGRQTYILDKNGVVQLIYNNQF 199 (215)
Q Consensus 171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~~ 199 (215)
. +| +++++ ++|+++....|..
T Consensus 83 s-----IP--Tli~f-kdGk~v~~~~G~~ 103 (111)
T cd02965 83 R-----TP--ALLFF-RDGRYVGVLAGIR 103 (111)
T ss_pred c-----CC--EEEEE-ECCEEEEEEeCcc
Confidence 8 99 66666 7999999998854
No 108
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=99.00 E-value=1.1e-08 Score=76.06 Aligned_cols=140 Identities=21% Similarity=0.359 Sum_probs=101.0
Q ss_pred CCCCCCCCCeEEeC----------CCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHH-HHHcCcEEEE-Ee
Q 028030 68 VSKGQAPPSFTLKD----------QEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEK-FKKAGAEVIG-IS 135 (215)
Q Consensus 68 ~~~g~~~P~f~l~~----------~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~-~~~~~v~vv~-vs 135 (215)
++.|+++|...+.| .+.+.++..++.||+.+|... |--...-....|-+..+.+. ++....+..+ |+
T Consensus 1 ~~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~i-AGr~sake~N~~l~~aik~a~f~~d~yqtttIiN 79 (160)
T PF09695_consen 1 ITLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHI-AGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIIN 79 (160)
T ss_pred CcCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEe-ccCCchhHhhHHHHHHHHHcCCCccceeEEEEEe
Confidence 45788899888765 234556667789999999998 55444444555566666554 6666688887 46
Q ss_pred CCCH-----HHHHHHHHHcC--CCeE-EEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHH
Q 028030 136 GDDS-----SSHKAFAKKYR--LPYT-LLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDE 207 (215)
Q Consensus 136 ~d~~-----~~~~~~~~~~~--~~~~-~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~ 207 (215)
.||+ .-++..+++.. ++|. ++.|.++.+.++|++..+ +..++++|++|+|++...|...+ +.+++
T Consensus 80 ~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~~~aW~L~~~------~SaiiVlDK~G~V~F~k~G~Ls~-~Ev~q 152 (160)
T PF09695_consen 80 LDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVVRKAWQLQEE------SSAIIVLDKQGKVQFVKEGALSP-AEVQQ 152 (160)
T ss_pred cccccccchHHHHHHHHHhhhhCCCcEEEEcCCCceeccccCCCC------CceEEEEcCCccEEEEECCCCCH-HHHHH
Confidence 7653 34556665443 4554 568999999999999852 33899999999999999997654 56889
Q ss_pred HHHHHhcC
Q 028030 208 TLKFLQSS 215 (215)
Q Consensus 208 il~~l~~s 215 (215)
++.+|++.
T Consensus 153 Vi~Ll~~n 160 (160)
T PF09695_consen 153 VIALLKKN 160 (160)
T ss_pred HHHHHhcC
Confidence 99998763
No 109
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.99 E-value=3.9e-09 Score=72.77 Aligned_cols=77 Identities=21% Similarity=0.323 Sum_probs=62.3
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHH-HcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFK-KAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA 171 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~-~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 171 (215)
++++++|.|| +.||++|+...+.+.++++.++ +.++.++.|+.+. +..+.+.|++..
T Consensus 14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------------------~~~~~~~~~i~~ 71 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---------------------NNDLCSEYGVRG 71 (101)
T ss_pred CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---------------------hHHHHHhCCCCC
Confidence 4569999999 9999999999999999999885 3458887776433 457788889986
Q ss_pred cCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 172 DFFGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 172 ~~~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| ++++++++|+....+.|.
T Consensus 72 -----~P--t~~~~~~~~~~~~~~~g~ 91 (101)
T cd02961 72 -----YP--TIKLFPNGSKEPVKYEGP 91 (101)
T ss_pred -----CC--EEEEEcCCCcccccCCCC
Confidence 88 999998887766666664
No 110
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.96 E-value=4.7e-09 Score=73.36 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=58.6
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
+++++|.|| ++||++|+...+.+.+++++++. .+.++.+..+ .+..+.+.|++..
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~---------------------~~~~~~~~~~i~~-- 72 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDAD---------------------VHQSLAQQYGVRG-- 72 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECc---------------------chHHHHHHCCCCc--
Confidence 467999999 99999999999999999998875 3777777653 3456778899987
Q ss_pred CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 174 FGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 174 ~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| ++++++++.+....+.|.
T Consensus 73 ---~P--~~~~~~~~~~~~~~~~g~ 92 (103)
T cd03001 73 ---FP--TIKVFGAGKNSPQDYQGG 92 (103)
T ss_pred ---cC--EEEEECCCCcceeecCCC
Confidence 89 888887553555556664
No 111
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.93 E-value=2.9e-08 Score=72.15 Aligned_cols=99 Identities=8% Similarity=0.031 Sum_probs=63.9
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHH-HHHHHcCCCeEEEEcCChhHHHHhC
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHK-AFAKKYRLPYTLLSDEGNKVRKEWG 168 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~g 168 (215)
.||+++|+|+ ++||++|+...+.. .++.+.+. +++.+|-|..+...++. .+.+ .....||
T Consensus 14 ~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~~~~~~--------------~~~~~~~ 77 (124)
T cd02955 14 EDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVDKIYMN--------------AAQAMTG 77 (124)
T ss_pred cCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHHHHHHH--------------HHHHhcC
Confidence 5899999999 99999999776532 23444443 35777777665432222 1221 1122456
Q ss_pred CCccCCCCCCccEEEEEcCCCcEEEEEeCC----CCCCccHHHHHHHHhc
Q 028030 169 VPADFFGSLPGRQTYILDKNGVVQLIYNNQ----FQPEKHIDETLKFLQS 214 (215)
Q Consensus 169 ~~~~~~g~~p~~~~~lid~~G~v~~~~~g~----~~~~~~~~~il~~l~~ 214 (215)
+.+ +| +++++|++|+++....+- ...+..+.++++.|++
T Consensus 78 ~~G-----~P--t~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd02955 78 QGG-----WP--LNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE 120 (124)
T ss_pred CCC-----CC--EEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence 665 89 999999999999876442 1233566777777664
No 112
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.93 E-value=5e-09 Score=94.65 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=62.0
Q ss_pred CCcCCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 028030 90 SKFKGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKE 166 (215)
Q Consensus 90 ~~~~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (215)
++.+||+++|+|| ++||++|+...+.+ .++.++++ ++.++.++.++.+ +++.++.++
T Consensus 470 a~~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~-----------------~~~~~l~~~ 529 (571)
T PRK00293 470 AKGKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANN-----------------AEDVALLKH 529 (571)
T ss_pred HHhcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCC-----------------hhhHHHHHH
Confidence 3346899999999 99999999876654 55666664 5888888775432 123567778
Q ss_pred hCCCccCCCCCCccEEEEEcCCCcEE--EEEeCCC
Q 028030 167 WGVPADFFGSLPGRQTYILDKNGVVQ--LIYNNQF 199 (215)
Q Consensus 167 ~g~~~~~~g~~p~~~~~lid~~G~v~--~~~~g~~ 199 (215)
|++.+ +| +++++|+||+++ .++.|..
T Consensus 530 ~~v~g-----~P--t~~~~~~~G~~i~~~r~~G~~ 557 (571)
T PRK00293 530 YNVLG-----LP--TILFFDAQGQEIPDARVTGFM 557 (571)
T ss_pred cCCCC-----CC--EEEEECCCCCCcccccccCCC
Confidence 88887 89 999999999985 5666754
No 113
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.92 E-value=7.6e-09 Score=74.01 Aligned_cols=72 Identities=21% Similarity=0.323 Sum_probs=58.4
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
+++++|.|| ++||++|+...|.|++++++++ ++.++-|..+ .. .+...|++..
T Consensus 24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~---------------------~~-~l~~~~~i~~-- 76 (113)
T cd02957 24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAE---------------------KA-FLVNYLDIKV-- 76 (113)
T ss_pred CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEch---------------------hh-HHHHhcCCCc--
Confidence 589999999 9999999999999999999886 4777777542 23 6777888886
Q ss_pred CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 174 FGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 174 ~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| +++++ ++|+++....|.
T Consensus 77 ---~P--t~~~f-~~G~~v~~~~G~ 95 (113)
T cd02957 77 ---LP--TLLVY-KNGELIDNIVGF 95 (113)
T ss_pred ---CC--EEEEE-ECCEEEEEEecH
Confidence 99 66555 799999988773
No 114
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.90 E-value=1.6e-08 Score=72.45 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=59.5
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
++.++|+|| ++||++|+...+.+.++.++++ .++++.|..| ...++...|++..
T Consensus 22 ~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~d---------------------~~~~l~~~~~v~~-- 75 (113)
T cd02975 22 PVDLVVFSS-KEGCQYCEVTKQLLEELSELSD--KLKLEIYDFD---------------------EDKEKAEKYGVER-- 75 (113)
T ss_pred CeEEEEEeC-CCCCCChHHHHHHHHHHHHhcC--ceEEEEEeCC---------------------cCHHHHHHcCCCc--
Confidence 455777778 9999999999999999988762 4777777754 3456888999987
Q ss_pred CCCCCccEEEEEcCCCcEEE-EEeCCCCCCccHHHHHHHH
Q 028030 174 FGSLPGRQTYILDKNGVVQL-IYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 174 ~g~~p~~~~~lid~~G~v~~-~~~g~~~~~~~~~~il~~l 212 (215)
+| ++++++.+|+... .+.|. .....+.+++..|
T Consensus 76 ---vP--t~~i~~~g~~~~~~~~~G~-~~~~el~~~i~~i 109 (113)
T cd02975 76 ---VP--TTIFLQDGGKDGGIRYYGL-PAGYEFASLIEDI 109 (113)
T ss_pred ---CC--EEEEEeCCeecceEEEEec-CchHHHHHHHHHH
Confidence 89 7887764332211 45563 2334444454443
No 115
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.89 E-value=2.7e-08 Score=71.32 Aligned_cols=69 Identities=19% Similarity=0.272 Sum_probs=52.5
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA 171 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 171 (215)
+++++|.|| ++||++|+...+.++++++++++. .+.+..|+.+. +....+.+.|++..
T Consensus 19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~-------------------~~~~~~~~~~~i~~ 78 (114)
T cd02992 19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD-------------------EENVALCRDFGVTG 78 (114)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc-------------------hhhHHHHHhCCCCC
Confidence 479999999 999999999999999999988753 25555565432 12346778888887
Q ss_pred cCCCCCCccEEEEEcCCC
Q 028030 172 DFFGSLPGRQTYILDKNG 189 (215)
Q Consensus 172 ~~~g~~p~~~~~lid~~G 189 (215)
+| +++++.++.
T Consensus 79 -----~P--t~~lf~~~~ 89 (114)
T cd02992 79 -----YP--TLRYFPPFS 89 (114)
T ss_pred -----CC--EEEEECCCC
Confidence 89 888885444
No 116
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.88 E-value=1.8e-08 Score=72.16 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=60.9
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.+++++|.|| ++||++|+...|.|.++.++++ ++.++-|.. |....+.+.|++..
T Consensus 21 ~~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~---------------------~~~~~l~~~~~v~~- 75 (113)
T cd02989 21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNA---------------------EKAPFLVEKLNIKV- 75 (113)
T ss_pred CCCcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEc---------------------ccCHHHHHHCCCcc-
Confidence 3579999999 9999999999999999998886 478877765 44556888999997
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| +++++ ++|+++.+..|.
T Consensus 76 ----vP--t~l~f-k~G~~v~~~~g~ 94 (113)
T cd02989 76 ----LP--TVILF-KNGKTVDRIVGF 94 (113)
T ss_pred ----CC--EEEEE-ECCEEEEEEECc
Confidence 99 66555 699999887664
No 117
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.84 E-value=7.1e-08 Score=65.09 Aligned_cols=73 Identities=25% Similarity=0.354 Sum_probs=58.9
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
+++++|.|| +.||+.|....+.++++.++ ..++.++.++.+. ..++...|++..
T Consensus 10 ~~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~---------------------~~~~~~~~~v~~-- 63 (93)
T cd02947 10 AKPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE---------------------NPELAEEYGVRS-- 63 (93)
T ss_pred CCcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC---------------------ChhHHHhcCccc--
Confidence 388999999 99999999999999999877 3468888887643 456677888876
Q ss_pred CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 174 FGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 174 ~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| +++++ ++|+++..+.|.
T Consensus 64 ---~P--~~~~~-~~g~~~~~~~g~ 82 (93)
T cd02947 64 ---IP--TFLFF-KNGKEVDRVVGA 82 (93)
T ss_pred ---cc--EEEEE-ECCEEEEEEecC
Confidence 88 77766 578888888774
No 118
>PTZ00102 disulphide isomerase; Provisional
Probab=98.81 E-value=2.7e-08 Score=88.04 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=70.9
Q ss_pred EeCCCCCeeecC-CcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEEeCCCHHHHHHHHHHcCCCeEEE
Q 028030 79 LKDQEGRNVSLS-KFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGISGDDSSSHKAFAKKYRLPYTLL 156 (215)
Q Consensus 79 l~~~~g~~~~l~-~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~ 156 (215)
+....|+.+.-. .-.||.+||+|| ++||++|+...|.+.++++++++. .+.+..+..+.
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~------------------ 419 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA------------------ 419 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC------------------
Confidence 444455544322 125799999999 999999999999999999988764 35555565432
Q ss_pred EcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 157 SDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 157 ~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
+......|++.+ +| ++++++++|++...+.|.. ..+++.+.|+
T Consensus 420 ---~~~~~~~~~v~~-----~P--t~~~~~~~~~~~~~~~G~~----~~~~l~~~i~ 462 (477)
T PTZ00102 420 ---NETPLEEFSWSA-----FP--TILFVKAGERTPIPYEGER----TVEGFKEFVN 462 (477)
T ss_pred ---CccchhcCCCcc-----cC--eEEEEECCCcceeEecCcC----CHHHHHHHHH
Confidence 233456778876 89 9999998888766777753 3344444443
No 119
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.80 E-value=5.5e-08 Score=67.89 Aligned_cols=84 Identities=23% Similarity=0.387 Sum_probs=57.9
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKK-AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
++.++|+|| ++||++|+...+.+.++++.+++ ..+.+..|+.+. .++...+++..
T Consensus 18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~----------------------~~~~~~~~~~~- 73 (104)
T cd02995 18 DKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA----------------------NDVPSEFVVDG- 73 (104)
T ss_pred CCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc----------------------hhhhhhccCCC-
Confidence 589999999 99999999999999999999876 346666676532 13445566654
Q ss_pred CCCCCCccEEEEEcCCCc-EEEEEeCCCCCCccHHHHHHH
Q 028030 173 FFGSLPGRQTYILDKNGV-VQLIYNNQFQPEKHIDETLKF 211 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~-v~~~~~g~~~~~~~~~~il~~ 211 (215)
+| +++++.++++ -...+.|. ...+++++.
T Consensus 74 ----~P--t~~~~~~~~~~~~~~~~g~----~~~~~l~~f 103 (104)
T cd02995 74 ----FP--TILFFPAGDKSNPIKYEGD----RTLEDLIKF 103 (104)
T ss_pred ----CC--EEEEEcCCCcCCceEccCC----cCHHHHHhh
Confidence 88 7777755441 23345553 344555543
No 120
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.79 E-value=3.5e-07 Score=71.38 Aligned_cols=128 Identities=19% Similarity=0.359 Sum_probs=102.0
Q ss_pred CCCCCCCCCeEEeCCCCCeeecCCc-CCCcEEEEEEc------CCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHH
Q 028030 68 VSKGQAPPSFTLKDQEGRNVSLSKF-KGKPVVVYFYP------ADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140 (215)
Q Consensus 68 ~~~g~~~P~f~l~~~~g~~~~l~~~-~gk~~ll~f~~------a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~ 140 (215)
+..+..-.++.+...+|+ ++|.|+ .||-.||+... ...|+.|...+..+......+..+++.++.||-...+
T Consensus 40 LP~v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~ 118 (211)
T PF05988_consen 40 LPMVEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLE 118 (211)
T ss_pred CCCccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHH
Confidence 344455556888889998 899996 78754444321 3569999999999977778889889999999999999
Q ss_pred HHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030 141 SHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 141 ~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g 197 (215)
++..|.+..|+.+|.++..+..+-..|++.....+..|.-.+|+-|. |+|...|..
T Consensus 119 ~i~afk~rmGW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg-~~VfhTyst 174 (211)
T PF05988_consen 119 KIEAFKRRMGWTFPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDG-GRVFHTYST 174 (211)
T ss_pred HHHHHHHhcCCCceEEEcCCCcccccccceeccCCCceeEEEEEEcC-CEEEEEeec
Confidence 99999999999999999888888888998654334467666777775 888887754
No 121
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.76 E-value=4.6e-08 Score=85.64 Aligned_cols=91 Identities=18% Similarity=0.374 Sum_probs=65.0
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
+++++||+|| ++||++|+...|.+.++++++++.++.|+.|..|..+ .......|++..
T Consensus 370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~-------------------~~~~~~~~~I~~- 428 (463)
T TIGR00424 370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ-------------------KEFAKQELQLGS- 428 (463)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc-------------------cHHHHHHcCCCc-
Confidence 5789999999 9999999999999999999998777888888775321 112235688886
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
+| +++++.+++.-...|.+. ..+.+.+++.++
T Consensus 429 ----~P--Tii~Fk~g~~~~~~Y~~g---~R~~e~L~~Fv~ 460 (463)
T TIGR00424 429 ----FP--TILFFPKHSSRPIKYPSE---KRDVDSLMSFVN 460 (463)
T ss_pred ----cc--eEEEEECCCCCceeCCCC---CCCHHHHHHHHH
Confidence 89 777775443222234331 355666776665
No 122
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.75 E-value=1.7e-07 Score=67.02 Aligned_cols=93 Identities=18% Similarity=0.299 Sum_probs=64.4
Q ss_pred cCCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030 92 FKGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG 168 (215)
Q Consensus 92 ~~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g 168 (215)
-++|+++|+|+ ++||++|......+ .++.+.+.+ ++.++.+..++++ ..++...|+
T Consensus 15 ~~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e-------------------~~~~~~~~~ 73 (114)
T cd02958 15 SEKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSE-------------------GQRFLQSYK 73 (114)
T ss_pred hhCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCcc-------------------HHHHHHHhC
Confidence 35899999999 99999998765543 224344433 4555566554432 234566777
Q ss_pred CCccCCCCCCccEEEEEcC-CCcEEEEEeCCCCCCccHHHHHHHH
Q 028030 169 VPADFFGSLPGRQTYILDK-NGVVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 169 ~~~~~~g~~p~~~~~lid~-~G~v~~~~~g~~~~~~~~~~il~~l 212 (215)
+.. +| .++++|+ +|+++....|...++..+..+.+.+
T Consensus 74 ~~~-----~P--~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 74 VDK-----YP--HIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred ccC-----CC--eEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 776 89 9999999 8999999999776655555444444
No 123
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.75 E-value=9.6e-08 Score=73.66 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=58.2
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
++++||.|| ++||++|+...+.|.+++.+|. ++.|+-|..+. . .+...|++..
T Consensus 83 ~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~---------------------~-~l~~~f~v~~-- 135 (175)
T cd02987 83 DTTVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASA---------------------T-GASDEFDTDA-- 135 (175)
T ss_pred CcEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccc---------------------h-hhHHhCCCCC--
Confidence 358999999 9999999999999999999986 48888887542 2 5667788876
Q ss_pred CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 174 FGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 174 ~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| +++++ ++|+++..+.|.
T Consensus 136 ---vP--Tllly-k~G~~v~~~vG~ 154 (175)
T cd02987 136 ---LP--ALLVY-KGGELIGNFVRV 154 (175)
T ss_pred ---CC--EEEEE-ECCEEEEEEech
Confidence 99 55555 799999887763
No 124
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.6e-08 Score=78.20 Aligned_cols=79 Identities=34% Similarity=0.391 Sum_probs=63.0
Q ss_pred ecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030 88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW 167 (215)
Q Consensus 88 ~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (215)
.++.-.+|.++|+|+ ++||++|+...|.+..+..+|+ +..++-|.+ |+-+..+..+
T Consensus 15 ~ls~ag~k~v~Vdft-a~wCGPCk~IaP~Fs~lankYp--~aVFlkVdV---------------------d~c~~taa~~ 70 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFT-ASWCGPCKRIAPIFSDLANKYP--GAVFLKVDV---------------------DECRGTAATN 70 (288)
T ss_pred hhhccCceEEEEEEE-ecccchHHhhhhHHHHhhhhCc--ccEEEEEeH---------------------HHhhchhhhc
Confidence 344445699999999 9999999999999999999997 568888865 3445667788
Q ss_pred CCCccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 168 GVPADFFGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 168 g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
|+.. +| +|++=.+|+-+....|.
T Consensus 71 gV~a-----mP---TFiff~ng~kid~~qGA 93 (288)
T KOG0908|consen 71 GVNA-----MP---TFIFFRNGVKIDQIQGA 93 (288)
T ss_pred Cccc-----Cc---eEEEEecCeEeeeecCC
Confidence 9987 99 45555789888888774
No 125
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.72 E-value=1.3e-07 Score=63.14 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=50.2
Q ss_pred EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCC
Q 028030 97 VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGS 176 (215)
Q Consensus 97 ~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~ 176 (215)
.|..|| ++||++|+...+.|.+++++++.. +.++.|..+. +.++...||+..
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~~---------------------~~~~~~~~~v~~----- 53 (82)
T TIGR00411 2 KIELFT-SPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVME---------------------NPQKAMEYGIMA----- 53 (82)
T ss_pred EEEEEE-CCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCcc---------------------CHHHHHHcCCcc-----
Confidence 567888 999999999999999999988753 7777777542 334667789887
Q ss_pred CCccEEEEEcCCCcEEEEEeCC
Q 028030 177 LPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 177 ~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| +++ + +|++ .+.|.
T Consensus 54 vP--t~~-~--~g~~--~~~G~ 68 (82)
T TIGR00411 54 VP--AIV-I--NGDV--EFIGA 68 (82)
T ss_pred CC--EEE-E--CCEE--EEecC
Confidence 89 554 5 6664 45553
No 126
>PLN02309 5'-adenylylsulfate reductase
Probab=98.71 E-value=1.2e-07 Score=83.08 Aligned_cols=90 Identities=22% Similarity=0.454 Sum_probs=65.6
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHH-HhCCCc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRK-EWGVPA 171 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~g~~~ 171 (215)
++|++||+|| ++||++|+...|.+.++++++...++.|+.|+.|. .+.++.. .|++..
T Consensus 364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~--------------------~~~~la~~~~~I~~ 422 (457)
T PLN02309 364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG--------------------DQKEFAKQELQLGS 422 (457)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC--------------------cchHHHHhhCCCce
Confidence 5789999999 99999999999999999999987779888888652 1223443 578886
Q ss_pred cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
+| +++++.++.+-...|.+. ..+.+.++..++
T Consensus 423 -----~P--Til~f~~g~~~~v~Y~~~---~R~~~~L~~fv~ 454 (457)
T PLN02309 423 -----FP--TILLFPKNSSRPIKYPSE---KRDVDSLLSFVN 454 (457)
T ss_pred -----ee--EEEEEeCCCCCeeecCCC---CcCHHHHHHHHH
Confidence 89 788885554333334432 245666766665
No 127
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.60 E-value=4.8e-07 Score=70.78 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=56.9
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
+++|||.|| ++||++|+...+.|.+++.+|. .+.|+-|..+. ....|++..
T Consensus 102 ~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~------------------------~~~~~~i~~-- 152 (192)
T cd02988 102 DTWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQ------------------------CIPNYPDKN-- 152 (192)
T ss_pred CCEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHH------------------------hHhhCCCCC--
Confidence 468999999 9999999999999999999996 48888887642 124677776
Q ss_pred CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 174 FGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 174 ~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| +++++ ++|+++..+.|.
T Consensus 153 ---lP--Tlliy-k~G~~v~~ivG~ 171 (192)
T cd02988 153 ---LP--TILVY-RNGDIVKQFIGL 171 (192)
T ss_pred ---CC--EEEEE-ECCEEEEEEeCc
Confidence 99 55555 899999998874
No 128
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.59 E-value=3.2e-07 Score=60.90 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=44.8
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCC
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSL 177 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~ 177 (215)
.|.|| ++||++|+...+.+.++.+++..+ ++++-| |+.+ .+..||+.. +
T Consensus 2 ~i~~~-a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v--~~~~----------------------~a~~~~v~~-----v 50 (76)
T TIGR00412 2 KIQIY-GTGCANCQMTEKNVKKAVEELGID-AEFEKV--TDMN----------------------EILEAGVTA-----T 50 (76)
T ss_pred EEEEE-CCCCcCHHHHHHHHHHHHHHcCCC-eEEEEe--CCHH----------------------HHHHcCCCc-----C
Confidence 47899 999999999999999999887643 555444 3222 245688887 9
Q ss_pred CccEEEEEcCCCcEEEEEeC
Q 028030 178 PGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 178 p~~~~~lid~~G~v~~~~~g 197 (215)
| +++ + ||+++ +.|
T Consensus 51 P--ti~-i--~G~~~--~~G 63 (76)
T TIGR00412 51 P--GVA-V--DGELV--IMG 63 (76)
T ss_pred C--EEE-E--CCEEE--EEe
Confidence 9 555 4 88877 545
No 129
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.59 E-value=2.9e-07 Score=64.30 Aligned_cols=70 Identities=24% Similarity=0.448 Sum_probs=54.9
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
|+++++.|+ +.||++|....+.+.+++++++++ +.++.|..|. ...+...||+...
T Consensus 12 ~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~---------------------~~~~~~~~~i~~~- 67 (103)
T cd02982 12 GKPLLVLFY-NKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD---------------------FGRHLEYFGLKEE- 67 (103)
T ss_pred CCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh---------------------hHHHHHHcCCChh-
Confidence 789999999 999999999999999999999965 8888887533 3457777888721
Q ss_pred CCCCCccEEEEEcCC-CcE
Q 028030 174 FGSLPGRQTYILDKN-GVV 191 (215)
Q Consensus 174 ~g~~p~~~~~lid~~-G~v 191 (215)
.+| ++++++.+ |+.
T Consensus 68 --~~P--~~~~~~~~~~~k 82 (103)
T cd02982 68 --DLP--VIAIINLSDGKK 82 (103)
T ss_pred --hCC--EEEEEecccccc
Confidence 188 77777763 443
No 130
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.56 E-value=4.8e-07 Score=79.51 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=61.0
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcC--cEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG--AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
++++++|.|| ++||++|+...|.+.++++.+.+.+ +.++.|..+ .+.++...|++.
T Consensus 17 ~~~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~i~ 74 (462)
T TIGR01130 17 SHEFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT---------------------EEKDLAQKYGVS 74 (462)
T ss_pred cCCCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC---------------------CcHHHHHhCCCc
Confidence 4688999999 9999999999999999999888765 667777643 345788889998
Q ss_pred ccCCCCCCccEEEEEcCCCcE-EEEEeCCC
Q 028030 171 ADFFGSLPGRQTYILDKNGVV-QLIYNNQF 199 (215)
Q Consensus 171 ~~~~g~~p~~~~~lid~~G~v-~~~~~g~~ 199 (215)
. +| +++++ ++|+. +..+.|..
T Consensus 75 ~-----~P--t~~~~-~~g~~~~~~~~g~~ 96 (462)
T TIGR01130 75 G-----YP--TLKIF-RNGEDSVSDYNGPR 96 (462)
T ss_pred c-----cc--EEEEE-eCCccceeEecCCC
Confidence 7 89 77766 57776 56677754
No 131
>PTZ00062 glutaredoxin; Provisional
Probab=98.56 E-value=4.6e-07 Score=71.35 Aligned_cols=64 Identities=11% Similarity=0.024 Sum_probs=53.9
Q ss_pred CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCC
Q 028030 95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFF 174 (215)
Q Consensus 95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~ 174 (215)
..+|++|| ++||++|+...+.|.++.++|+ ++.++-|..| |++..
T Consensus 18 g~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d-----------------------------~~V~~--- 62 (204)
T PTZ00062 18 GKLVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA-----------------------------DANNE--- 62 (204)
T ss_pred CcEEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc-----------------------------cCccc---
Confidence 56899999 9999999999999999999996 4888888643 78876
Q ss_pred CCCCccEEEEEcCCCcEEEEEeCC
Q 028030 175 GSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 175 g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| +.+++ ++|+++.++.|.
T Consensus 63 --vP--tfv~~-~~g~~i~r~~G~ 81 (204)
T PTZ00062 63 --YG--VFEFY-QNSQLINSLEGC 81 (204)
T ss_pred --ce--EEEEE-ECCEEEeeeeCC
Confidence 99 55555 799999999884
No 132
>PTZ00102 disulphide isomerase; Provisional
Probab=98.51 E-value=6e-07 Score=79.49 Aligned_cols=76 Identities=21% Similarity=0.357 Sum_probs=58.6
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcC--cEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG--AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
+++.++|.|| ++||++|+...|.+.++++.+.+.+ +.+.-|.. +.+..+.+.|++.
T Consensus 48 ~~~~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~---------------------~~~~~l~~~~~i~ 105 (477)
T PTZ00102 48 ENEIVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDA---------------------TEEMELAQEFGVR 105 (477)
T ss_pred cCCcEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEEC---------------------CCCHHHHHhcCCC
Confidence 4789999999 9999999999999999988887643 55555543 3456788899998
Q ss_pred ccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030 171 ADFFGSLPGRQTYILDKNGVVQLIYNNQF 199 (215)
Q Consensus 171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~~ 199 (215)
+ +| ++++++.++.+ .+.|..
T Consensus 106 ~-----~P--t~~~~~~g~~~--~y~g~~ 125 (477)
T PTZ00102 106 G-----YP--TIKFFNKGNPV--NYSGGR 125 (477)
T ss_pred c-----cc--EEEEEECCceE--EecCCC
Confidence 7 99 88888755544 666643
No 133
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.51 E-value=3.3e-07 Score=72.92 Aligned_cols=95 Identities=20% Similarity=0.317 Sum_probs=70.1
Q ss_pred ecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030 88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW 167 (215)
Q Consensus 88 ~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (215)
.+.++.+++-|++|+ ...|+.|....|.|+.+.++| |+.|+.||.|.... ..|+-.. .+..+++.+
T Consensus 114 ~l~~la~~~gL~~F~-~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~---------~~fp~~~-~~~g~~~~l 179 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFY-RSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPI---------PSFPNPR-PDPGQAKRL 179 (215)
T ss_pred HHHHHhhCeEEEEEE-cCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCC---------cCCCCCC-CCHHHHHHc
Confidence 355667789999999 788999999999999999887 59999999985421 0122222 156688899
Q ss_pred CCCccCCCCCCccEEEEEcCCC-cEEEEEeCCCCCCc
Q 028030 168 GVPADFFGSLPGRQTYILDKNG-VVQLIYNNQFQPEK 203 (215)
Q Consensus 168 g~~~~~~g~~p~~~~~lid~~G-~v~~~~~g~~~~~~ 203 (215)
|+.. +| ++||+++++ ++.-...|..+.++
T Consensus 180 ~v~~-----~P--al~Lv~~~~~~~~pv~~G~~s~~~ 209 (215)
T PF13728_consen 180 GVKV-----TP--ALFLVNPNTKKWYPVSQGFMSLDE 209 (215)
T ss_pred CCCc-----CC--EEEEEECCCCeEEEEeeecCCHHH
Confidence 9976 88 999999999 44444556444333
No 134
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=98.48 E-value=9.4e-07 Score=63.29 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCC---------------------
Q 028030 117 FRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFG--------------------- 175 (215)
Q Consensus 117 l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g--------------------- 175 (215)
|.+..+++++.|+++|.|..++.+.+++|++..+++++++.|++.++++++|+......
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQSAKNG 81 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHHHHHc
Confidence 56677888889999999999999779999999999999999999999999999752110
Q ss_pred CCC----------ccEEEEEcCCCcEEEEEeC
Q 028030 176 SLP----------GRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 176 ~~p----------~~~~~lid~~G~v~~~~~g 197 (215)
.++ ..-.||+|++|+|++.+..
T Consensus 82 ~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~ 113 (115)
T PF13911_consen 82 GIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD 113 (115)
T ss_pred CCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence 011 1357999999999988764
No 135
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=98.47 E-value=3.7e-06 Score=68.36 Aligned_cols=137 Identities=15% Similarity=0.208 Sum_probs=90.7
Q ss_pred CCCCCCCCeEEeCCCCCeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-c--CcEEEEEeCCCHHH---
Q 028030 69 SKGQAPPSFTLKDQEGRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK-A--GAEVIGISGDDSSS--- 141 (215)
Q Consensus 69 ~~g~~~P~f~l~~~~g~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-~--~v~vv~vs~d~~~~--- 141 (215)
......|+|...+++|+.+++.+. +||+.||..+...|-..|....-. ...++|.+ . .+++|-|++.+.--
T Consensus 96 ~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e~~~k~~ 173 (252)
T PF05176_consen 96 DKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIENWLKSW 173 (252)
T ss_pred HhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecchHHHHHH
Confidence 344688999999999999988775 999988887756665555544333 22333332 2 69999999855421
Q ss_pred HHHHH-HH--cC------CCeEEEEcC--ChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030 142 HKAFA-KK--YR------LPYTLLSDE--GNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK 210 (215)
Q Consensus 142 ~~~~~-~~--~~------~~~~~~~d~--~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~ 210 (215)
+..+. .. .. -.|.++.+. ...+.+.+|+.+ .-+..+||||.+|+|+|...|...+ +.++.+.+
T Consensus 174 l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N-----~~~GYvyLVD~~grIRWagsG~At~-~E~~~L~k 247 (252)
T PF05176_consen 174 LVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINN-----SYVGYVYLVDPNGRIRWAGSGPATP-EELESLWK 247 (252)
T ss_pred HHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCC-----CCcCeEEEECCCCeEEeCccCCCCH-HHHHHHHH
Confidence 12222 11 11 224444444 568999999987 4455999999999999998886443 44666666
Q ss_pred HHh
Q 028030 211 FLQ 213 (215)
Q Consensus 211 ~l~ 213 (215)
.++
T Consensus 248 ~~~ 250 (252)
T PF05176_consen 248 CVK 250 (252)
T ss_pred HHh
Confidence 654
No 136
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.46 E-value=1.5e-06 Score=63.48 Aligned_cols=77 Identities=14% Similarity=0.268 Sum_probs=48.3
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHH--HHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRD--SYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~--l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
.||+++|+|+ ++||++|+..-..+-+ -..++-++++.+|-+..|..+ .+.. ..| .
T Consensus 22 ~~Kpvmv~f~-sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td------------------~~~~---~~g-~ 78 (130)
T cd02960 22 SNKPLMVIHH-LEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD------------------KNLS---PDG-Q 78 (130)
T ss_pred CCCeEEEEEe-CCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC------------------CCcC---ccC-c
Confidence 5899999999 9999999987776532 222333334544444433211 0000 012 1
Q ss_pred ccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030 171 ADFFGSLPGRQTYILDKNGVVQLIYNNQF 199 (215)
Q Consensus 171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~~ 199 (215)
.+| +++++|++|+++....|..
T Consensus 79 -----~vP--tivFld~~g~vi~~i~Gy~ 100 (130)
T cd02960 79 -----YVP--RIMFVDPSLTVRADITGRY 100 (130)
T ss_pred -----ccC--eEEEECCCCCCcccccccc
Confidence 278 9999999999998866643
No 137
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.44 E-value=1.2e-06 Score=69.80 Aligned_cols=79 Identities=19% Similarity=0.210 Sum_probs=58.2
Q ss_pred CcCCCcEEEEEEcC---CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030 91 KFKGKPVVVYFYPA---DETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW 167 (215)
Q Consensus 91 ~~~gk~~ll~f~~a---~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (215)
.+++.+.++.|+ + .||++|+...|.+.++.+++. ++++..+..|. |.+.++...|
T Consensus 16 ~~~~~~~i~~f~-~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~-------------------~~~~~l~~~~ 73 (215)
T TIGR02187 16 ELKNPVEIVVFT-DNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDT-------------------PEDKEEAEKY 73 (215)
T ss_pred hcCCCeEEEEEc-CCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCC-------------------cccHHHHHHc
Confidence 345556677788 6 999999999999999999885 35555554432 2456889999
Q ss_pred CCCccCCCCCCccEEEEEcCCCcEEE-EEeCCC
Q 028030 168 GVPADFFGSLPGRQTYILDKNGVVQL-IYNNQF 199 (215)
Q Consensus 168 g~~~~~~g~~p~~~~~lid~~G~v~~-~~~g~~ 199 (215)
++.. +| ++++++ +|+.+. .+.|..
T Consensus 74 ~V~~-----~P--t~~~f~-~g~~~~~~~~G~~ 98 (215)
T TIGR02187 74 GVER-----VP--TTIILE-EGKDGGIRYTGIP 98 (215)
T ss_pred CCCc-----cC--EEEEEe-CCeeeEEEEeecC
Confidence 9997 99 777765 677764 777743
No 138
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.43 E-value=9.3e-07 Score=71.80 Aligned_cols=104 Identities=15% Similarity=0.225 Sum_probs=76.4
Q ss_pred ecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030 88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW 167 (215)
Q Consensus 88 ~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (215)
.+.++.+++-|++|+ ...|+.|.+..|.|+.+.++|+ +.+++||+|.... ..||... .+...++.+
T Consensus 144 ~i~~la~~~gL~fFy-~~~C~~C~~~apil~~fa~~yg---i~v~~VS~DG~~~---------p~fp~~~-~d~gqa~~l 209 (256)
T TIGR02739 144 AIQQLSQSYGLFFFY-RGKSPISQKMAPVIQAFAKEYG---ISVIPISVDGTLI---------PGLPNSR-SDSGQAQHL 209 (256)
T ss_pred HHHHHHhceeEEEEE-CCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCC---------CCCCCcc-CChHHHHhc
Confidence 355566789999999 7889999999999999988765 9999999986421 1133322 245678889
Q ss_pred CCCccCCCCCCccEEEEEcCC-CcEEEEEeCCCCCCccHHHHHHHH
Q 028030 168 GVPADFFGSLPGRQTYILDKN-GVVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 168 g~~~~~~g~~p~~~~~lid~~-G~v~~~~~g~~~~~~~~~~il~~l 212 (215)
|+.. +| ++||++++ +++.-...|.+..++..+.++..+
T Consensus 210 ~v~~-----~P--al~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 210 GVKY-----FP--ALYLVNPKSQKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred CCcc-----Cc--eEEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 9986 78 99999999 555555667666666666666554
No 139
>PHA02125 thioredoxin-like protein
Probab=98.41 E-value=5.3e-06 Score=54.77 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=49.6
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCC
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSL 177 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~ 177 (215)
++.|| ++||++|+...+.|.++. +.++-|+ .|+..++.+.|++.. +
T Consensus 2 iv~f~-a~wC~~Ck~~~~~l~~~~-------~~~~~vd---------------------~~~~~~l~~~~~v~~-----~ 47 (75)
T PHA02125 2 IYLFG-AEWCANCKMVKPMLANVE-------YTYVDVD---------------------TDEGVELTAKHHIRS-----L 47 (75)
T ss_pred EEEEE-CCCCHhHHHHHHHHHHHh-------heEEeee---------------------CCCCHHHHHHcCCce-----e
Confidence 68899 999999999888876541 2333332 245668899999997 9
Q ss_pred CccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030 178 PGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 178 p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l 212 (215)
| + ++ +|+.+..+.|. ++++.++.+.|
T Consensus 48 P--T-~~---~g~~~~~~~G~---~~~~~~l~~~~ 73 (75)
T PHA02125 48 P--T-LV---NTSTLDRFTGV---PRNVAELKEKL 73 (75)
T ss_pred C--e-EE---CCEEEEEEeCC---CCcHHHHHHHh
Confidence 9 4 43 67877777773 23455665554
No 140
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.34 E-value=1.8e-06 Score=69.75 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=75.3
Q ss_pred ecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030 88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW 167 (215)
Q Consensus 88 ~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (215)
.+.++.+++-|++|+ ...|++|.+..|.|+.+.++|+ +.|++||+|.... ..||... .+...+..+
T Consensus 137 ~i~~la~~~GL~fFy-~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG~~~---------p~fp~~~-~d~gqa~~l 202 (248)
T PRK13703 137 AIAKLAEHYGLMFFY-RGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDGVIN---------PLLPDSR-TDQGQAQRL 202 (248)
T ss_pred HHHHHHhcceEEEEE-CCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCC---------CCCCCCc-cChhHHHhc
Confidence 355566789999999 7889999999999999988765 9999999986421 1133322 233455789
Q ss_pred CCCccCCCCCCccEEEEEcCCC-cEEEEEeCCCCCCccHHHHHHHH
Q 028030 168 GVPADFFGSLPGRQTYILDKNG-VVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 168 g~~~~~~g~~p~~~~~lid~~G-~v~~~~~g~~~~~~~~~~il~~l 212 (215)
|+.. +| ++||++++. ++.-...|.+..++..+.++...
T Consensus 203 ~v~~-----~P--Al~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 203 GVKY-----FP--ALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred CCcc-----cc--eEEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 9976 78 999999996 66656667666555556655443
No 141
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.30 E-value=6.2e-06 Score=52.95 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=45.5
Q ss_pred EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCC
Q 028030 97 VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGS 176 (215)
Q Consensus 97 ~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~ 176 (215)
-+..|+ +.||++|+...+.|+++.+++. ++++.-+..|+ ..++...||+..
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~~---------------------~~~l~~~~~i~~----- 52 (67)
T cd02973 2 NIEVFV-SPTCPYCPDAVQAANRIAALNP--NISAEMIDAAE---------------------FPDLADEYGVMS----- 52 (67)
T ss_pred EEEEEE-CCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEccc---------------------CHhHHHHcCCcc-----
Confidence 477888 9999999999999999866543 47777776533 334667788876
Q ss_pred CCccEEEEEcCCCcEEEE
Q 028030 177 LPGRQTYILDKNGVVQLI 194 (215)
Q Consensus 177 ~p~~~~~lid~~G~v~~~ 194 (215)
+| ++++ +|++++.
T Consensus 53 vP---ti~i--~~~~~~~ 65 (67)
T cd02973 53 VP---AIVI--NGKVEFV 65 (67)
T ss_pred cC---EEEE--CCEEEEe
Confidence 88 4556 4566543
No 142
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.30 E-value=3.6e-06 Score=67.02 Aligned_cols=83 Identities=12% Similarity=0.191 Sum_probs=54.8
Q ss_pred cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030 92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA 171 (215)
Q Consensus 92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 171 (215)
+.+.++|+.|| ++||++|+...+.++++..++. .+.+.-|.. |...++...||+..
T Consensus 131 ~~~pv~I~~F~-a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~---------------------~~~~~~~~~~~V~~ 186 (215)
T TIGR02187 131 LDEPVRIEVFV-TPTCPYCPYAVLMAHKFALAND--KILGEMIEA---------------------NENPDLAEKYGVMS 186 (215)
T ss_pred cCCCcEEEEEE-CCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeC---------------------CCCHHHHHHhCCcc
Confidence 34455666699 9999999988888888776643 366555543 34557778899987
Q ss_pred cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
+| + ++++++|+. +.|.. ..+++.+.|+
T Consensus 187 -----vP--t-l~i~~~~~~---~~G~~----~~~~l~~~l~ 213 (215)
T TIGR02187 187 -----VP--K-IVINKGVEE---FVGAY----PEEQFLEYIL 213 (215)
T ss_pred -----CC--E-EEEecCCEE---EECCC----CHHHHHHHHH
Confidence 99 4 556677763 55532 2344555443
No 143
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.29 E-value=4.4e-06 Score=73.41 Aligned_cols=87 Identities=20% Similarity=0.357 Sum_probs=62.6
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-c-CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK-A-GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
.++.+||.|| ++||++|+...|.+.++++.+++ . ++.++.|..+..+ +.. +++.
T Consensus 363 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----------------------~~~-~~i~ 418 (462)
T TIGR01130 363 ETKDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----------------------VPP-FEVE 418 (462)
T ss_pred CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----------------------cCC-CCcc
Confidence 4789999999 99999999999999999999987 2 5888888764321 112 6666
Q ss_pred ccCCCCCCccEEEEEcCCCcE-EEEEeCCCCCCccHHHHHHHHhc
Q 028030 171 ADFFGSLPGRQTYILDKNGVV-QLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 171 ~~~~g~~p~~~~~lid~~G~v-~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
. +| +++++.+++++ ...+.|. ...+.+++.|++
T Consensus 419 ~-----~P--t~~~~~~~~~~~~~~~~g~----~~~~~l~~~l~~ 452 (462)
T TIGR01130 419 G-----FP--TIKFVPAGKKSEPVPYDGD----RTLEDFSKFIAK 452 (462)
T ss_pred c-----cC--EEEEEeCCCCcCceEecCc----CCHHHHHHHHHh
Confidence 5 88 89999766663 2345553 334566666653
No 144
>smart00594 UAS UAS domain.
Probab=98.29 E-value=6.7e-06 Score=59.59 Aligned_cols=88 Identities=14% Similarity=0.221 Sum_probs=61.0
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 169 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~ 169 (215)
.+|.++|+|+ +.||+.|......+ .++.+.+. +++.++.+..++.+ ..++.+.|++
T Consensus 26 ~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i~-~~fv~~~~dv~~~e-------------------g~~l~~~~~~ 84 (122)
T smart00594 26 QRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLIR-ENFIFWQVDVDTSE-------------------GQRVSQFYKL 84 (122)
T ss_pred hcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHHH-cCEEEEEecCCChh-------------------HHHHHHhcCc
Confidence 5799999999 99999999877654 22333333 35666667665554 2567778888
Q ss_pred CccCCCCCCccEEEEEcCCC-----cEEEEEeCCCCCCccHHHHHHHH
Q 028030 170 PADFFGSLPGRQTYILDKNG-----VVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 170 ~~~~~g~~p~~~~~lid~~G-----~v~~~~~g~~~~~~~~~~il~~l 212 (215)
.. +| +++++|++| +++....|.. ..++++..|
T Consensus 85 ~~-----~P--~~~~l~~~~g~~~~~~~~~~~G~~----~~~~l~~~l 121 (122)
T smart00594 85 DS-----FP--YVAIVDPRTGQRVIEWVGVVEGEI----SPEELMTFL 121 (122)
T ss_pred CC-----CC--EEEEEecCCCceeEEEeccccCCC----CHHHHHHhh
Confidence 76 89 999999998 4555566643 345555554
No 145
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=1e-05 Score=61.78 Aligned_cols=135 Identities=15% Similarity=0.209 Sum_probs=100.4
Q ss_pred eCCCCCeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEc
Q 028030 80 KDQEGRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSD 158 (215)
Q Consensus 80 ~~~~g~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d 158 (215)
-+..|+.+.+.++ +.+..+|.|.+...|-.|+.+...|.++..-+++.|+..|+|-.........+..+-.+.-.++.|
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~~f~gevylD 114 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQTYFSGEVYLD 114 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhcccCcceeEEEc
Confidence 5678899999987 678899999999999999999999999977888889999999765555556666666666677888
Q ss_pred CChhHHHHhCCCcc------------------------CCC-CCCccEEEEEcCCCcEEEEEeCC-CCCCccHHHHHHHH
Q 028030 159 EGNKVRKEWGVPAD------------------------FFG-SLPGRQTYILDKNGVVQLIYNNQ-FQPEKHIDETLKFL 212 (215)
Q Consensus 159 ~~~~~~~~~g~~~~------------------------~~g-~~p~~~~~lid~~G~v~~~~~g~-~~~~~~~~~il~~l 212 (215)
++.+++..++.... ..| ..-+.-++++.+.|+|.+.+... .-+..+++.+++.+
T Consensus 115 ~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~gD~~~i~~Vl~v~ 194 (197)
T KOG4498|consen 115 PHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETGDHVPIDSVLQVV 194 (197)
T ss_pred CccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCCCCCCcCHHHHHHHh
Confidence 87776655544321 001 11134678888888998887653 33447899999887
Q ss_pred hc
Q 028030 213 QS 214 (215)
Q Consensus 213 ~~ 214 (215)
..
T Consensus 195 ~~ 196 (197)
T KOG4498|consen 195 GK 196 (197)
T ss_pred hc
Confidence 64
No 146
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.27 E-value=2.5e-06 Score=59.44 Aligned_cols=48 Identities=38% Similarity=0.607 Sum_probs=41.2
Q ss_pred ecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030 88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD 137 (215)
Q Consensus 88 ~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d 137 (215)
....+.++++++.|| +.||++|+..+|.+.++.+++.. .+.++.+...
T Consensus 26 ~~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred ehhhcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 344445889999999 99999999999999999999886 5888888875
No 147
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.25 E-value=8.4e-06 Score=50.30 Aligned_cols=63 Identities=19% Similarity=0.340 Sum_probs=46.8
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCC
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSL 177 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~ 177 (215)
|+.|| ..||+.|....+.+.++ +....++.++.++.+......++ ...+++.. .
T Consensus 1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~-----~ 54 (69)
T cd01659 1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKE------------------LKRYGVGG-----V 54 (69)
T ss_pred CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhH------------------HHhCCCcc-----c
Confidence 57888 99999999999999998 45556799999998766544433 33455544 7
Q ss_pred CccEEEEEcCC
Q 028030 178 PGRQTYILDKN 188 (215)
Q Consensus 178 p~~~~~lid~~ 188 (215)
| ++++++++
T Consensus 55 P--~~~~~~~~ 63 (69)
T cd01659 55 P--TLVVFGPG 63 (69)
T ss_pred c--EEEEEeCC
Confidence 7 77777665
No 148
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.22 E-value=2e-06 Score=62.99 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=46.4
Q ss_pred CcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHH---h
Q 028030 91 KFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKE---W 167 (215)
Q Consensus 91 ~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~ 167 (215)
....+..+++|. .+|||.|...+|.|.++++..+ ++++=.+..|+.. ++... .
T Consensus 38 ~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~~---------------------el~~~~lt~ 93 (129)
T PF14595_consen 38 SIQKPYNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDENK---------------------ELMDQYLTN 93 (129)
T ss_dssp T--S-EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHHH---------------------HHTTTTTT-
T ss_pred hcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCCh---------------------hHHHHHHhC
Confidence 344567899999 9999999999999999998865 4555555444332 22222 2
Q ss_pred CCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030 168 GVPADFFGSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 168 g~~~~~~g~~p~~~~~lid~~G~v~~~~~g 197 (215)
|... +| .++++|++|+++..|..
T Consensus 94 g~~~-----IP--~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 94 GGRS-----IP--TFIFLDKDGKELGRWGE 116 (129)
T ss_dssp SS-------SS--EEEEE-TT--EEEEEES
T ss_pred CCee-----cC--EEEEEcCCCCEeEEEcC
Confidence 3333 88 99999999999999976
No 149
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=98.22 E-value=2.4e-05 Score=62.03 Aligned_cols=115 Identities=18% Similarity=0.238 Sum_probs=83.9
Q ss_pred CCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcC---cEEEEEeCCCH-HHHHHHH
Q 028030 71 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG---AEVIGISGDDS-SSHKAFA 146 (215)
Q Consensus 71 g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~---v~vv~vs~d~~-~~~~~~~ 146 (215)
-.+.|.+++.+.+ ...+..|+++||-+. -.+|..|...+..|..|..++.+.| |.++.|+.-++ .....+.
T Consensus 7 C~~~p~W~i~~~~----pm~~~~G~VtvVALL-~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~ 81 (238)
T PF04592_consen 7 CKPPPPWKIGGQD----PMLNSLGHVTVVALL-QASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWE 81 (238)
T ss_pred CCCCCCceECCch----HhhhcCCcEEeeeeh-hhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHH
Confidence 3567777775433 445678999999999 6689999999999999999999875 67777876433 3333223
Q ss_pred --HHcCCCeEEEE-c-CChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 147 --KKYRLPYTLLS-D-EGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 147 --~~~~~~~~~~~-d-~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
++..-.++++. | ...+++..++-..+ -++|+|+-|++.+...-+
T Consensus 82 l~~r~~~~ipVyqq~~~q~dvW~~L~G~kd--------D~~iyDRCGrL~~~i~~P 129 (238)
T PF04592_consen 82 LKRRVSEHIPVYQQDENQPDVWELLNGSKD--------DFLIYDRCGRLTYHIPLP 129 (238)
T ss_pred HHHhCCCCCceecCCccccCHHHHhCCCcC--------cEEEEeccCcEEEEecCc
Confidence 23333488885 3 45788988888752 599999999999876543
No 150
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.21 E-value=2.4e-05 Score=61.10 Aligned_cols=121 Identities=17% Similarity=0.371 Sum_probs=91.5
Q ss_pred CeEEeCCCCCeeecCCc-CCCcEEEE--EEc----CCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030 76 SFTLKDQEGRNVSLSKF-KGKPVVVY--FYP----ADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK 148 (215)
Q Consensus 76 ~f~l~~~~g~~~~l~~~-~gk~~ll~--f~~----a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~ 148 (215)
++.+.+.+|+ .+|.|+ .||-.||+ |.+ ...|+.|...+..+.-....+...++.++.|+--.-+++..|.+.
T Consensus 54 ~Y~Fe~~~G~-~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~r 132 (247)
T COG4312 54 DYVFETENGK-KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRR 132 (247)
T ss_pred eeEeecCCcc-hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHh
Confidence 5566778886 699887 77654443 332 346999999999998888888888999999999999999999999
Q ss_pred cCCCeEEEEcCChhHHHHhCCCccCC------------------CCCCccEEEEEcCCCcEEEEEeC
Q 028030 149 YRLPYTLLSDEGNKVRKEWGVPADFF------------------GSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 149 ~~~~~~~~~d~~~~~~~~~g~~~~~~------------------g~~p~~~~~lid~~G~v~~~~~g 197 (215)
+|+.|+.++..++.+-..|.+..... .-.|+-.+|.-+.+|+|-..+..
T Consensus 133 mGW~f~w~Ss~~s~Fn~Df~vsf~~~q~~~G~~~yn~~~~~~~~rd~~G~~vF~~~e~g~v~~ty~~ 199 (247)
T COG4312 133 MGWQFPWVSSTDSDFNRDFQVSFTEDQQAPGVVVYNFERTPPTGRDLPGISVFYSDEDGRVYHTYSQ 199 (247)
T ss_pred cCCcceeEeccCcccccccccccchhhccCceeEeecccCCCccccCCCeeEEEEcCCCcccccccc
Confidence 99999999988888877786631100 12344467777888888766543
No 151
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.19 E-value=6.4e-06 Score=56.33 Aligned_cols=71 Identities=17% Similarity=0.120 Sum_probs=53.8
Q ss_pred CCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030 90 SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 169 (215)
Q Consensus 90 ~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~ 169 (215)
.++++.+.+..|+ +.||++|....+.+.++.+++. ++.+.-+..+ ...+++..||+
T Consensus 8 ~~l~~pv~i~~F~-~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~---------------------~~~e~a~~~~V 63 (89)
T cd03026 8 RRLNGPINFETYV-SLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGA---------------------LFQDEVEERGI 63 (89)
T ss_pred HhcCCCEEEEEEE-CCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhH---------------------hCHHHHHHcCC
Confidence 4567788888898 9999999999999999987765 4666666543 33467778999
Q ss_pred CccCCCCCCccEEEEEcCCCcEEEE
Q 028030 170 PADFFGSLPGRQTYILDKNGVVQLI 194 (215)
Q Consensus 170 ~~~~~g~~p~~~~~lid~~G~v~~~ 194 (215)
.. +| ++ ++ ||+++..
T Consensus 64 ~~-----vP--t~-vi--dG~~~~~ 78 (89)
T cd03026 64 MS-----VP--AI-FL--NGELFGF 78 (89)
T ss_pred cc-----CC--EE-EE--CCEEEEe
Confidence 87 99 55 45 6887764
No 152
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.14 E-value=3.7e-05 Score=51.57 Aligned_cols=47 Identities=30% Similarity=0.443 Sum_probs=36.1
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHH
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSS 141 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~ 141 (215)
.||+++|+|+ +.||+.|+..-..+ .++.+.+. +++.++-|..++...
T Consensus 16 ~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~ 65 (82)
T PF13899_consen 16 EGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDP 65 (82)
T ss_dssp HTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHH
T ss_pred cCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCCh
Confidence 5899999999 99999999887777 33433344 468999888876654
No 153
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.3e-05 Score=70.30 Aligned_cols=85 Identities=22% Similarity=0.340 Sum_probs=62.5
Q ss_pred CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
..++|.|| |.||+.|+...|.+.+.+..+++. .+.+.-|.. ..++.+...|++.+
T Consensus 43 ~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDa---------------------t~~~~~~~~y~v~g- 99 (493)
T KOG0190|consen 43 EFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA---------------------TEESDLASKYEVRG- 99 (493)
T ss_pred ceEEEEEE-chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec---------------------chhhhhHhhhcCCC-
Confidence 56889999 999999999999999999999986 344444421 23478889999998
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
.| ++.|-++|+....+.|.. ..+.|+.-|+
T Consensus 100 ----yP---TlkiFrnG~~~~~Y~G~r----~adgIv~wl~ 129 (493)
T KOG0190|consen 100 ----YP---TLKIFRNGRSAQDYNGPR----EADGIVKWLK 129 (493)
T ss_pred ----CC---eEEEEecCCcceeccCcc----cHHHHHHHHH
Confidence 99 555668999866666643 3445554443
No 154
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.97 E-value=7.9e-05 Score=53.52 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=66.5
Q ss_pred cCCCcEEEEEEcCC----CChhhHHHHH--HHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 028030 92 FKGKPVVVYFYPAD----ETPGCTKQAC--AFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRK 165 (215)
Q Consensus 92 ~~gk~~ll~f~~a~----~C~~C~~~~~--~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 165 (215)
-.+|.++|+++ ++ ||..|+..+. .+.+. + +.++.+++.++++++ ..+++.
T Consensus 15 ~e~K~llVylh-s~~~~~~~~fc~~~l~~~~v~~~---l-n~~fv~w~~dv~~~e-------------------g~~la~ 70 (116)
T cd02991 15 QELRFLLVYLH-GDDHQDTDEFCRNTLCAPEVIEY---I-NTRMLFWACSVAKPE-------------------GYRVSQ 70 (116)
T ss_pred hhCCEEEEEEe-CCCCccHHHHHHHHcCCHHHHHH---H-HcCEEEEEEecCChH-------------------HHHHHH
Confidence 35799999999 88 8889976552 23332 2 346777778777665 267888
Q ss_pred HhCCCccCCCCCCccEEEEE---cCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 166 EWGVPADFFGSLPGRQTYIL---DKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 166 ~~g~~~~~~g~~p~~~~~li---d~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
.+++.. +| ...++ +.+.+|+.+..|...+++.+..+...+++
T Consensus 71 ~l~~~~-----~P--~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 71 ALRERT-----YP--FLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred HhCCCC-----CC--EEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 888886 89 88888 77778899999987766666655555543
No 155
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.75 E-value=5.7e-05 Score=67.20 Aligned_cols=81 Identities=21% Similarity=0.265 Sum_probs=56.6
Q ss_pred cCCCcEEEEEEcCCCChhhHHHHHHH-HHHHHHHHHcCcEEEEEeC--CCHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030 92 FKGKPVVVYFYPADETPGCTKQACAF-RDSYEKFKKAGAEVIGISG--DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG 168 (215)
Q Consensus 92 ~~gk~~ll~f~~a~~C~~C~~~~~~l-~~l~~~~~~~~v~vv~vs~--d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g 168 (215)
-++|+|+|+|+ |+||-.|+..-+.. .+-....+-.|+..+-+.. ++++. .++.++||
T Consensus 472 ~~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~-------------------~~lLk~~~ 531 (569)
T COG4232 472 AKAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAI-------------------TALLKRLG 531 (569)
T ss_pred CCCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHH-------------------HHHHHHcC
Confidence 34579999999 99999999655543 4455555555677776543 44442 46667788
Q ss_pred CCccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030 169 VPADFFGSLPGRQTYILDKNGVVQLIYNNQF 199 (215)
Q Consensus 169 ~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~ 199 (215)
+-+ .| .+++++++|+=.....|-.
T Consensus 532 ~~G-----~P--~~~ff~~~g~e~~~l~gf~ 555 (569)
T COG4232 532 VFG-----VP--TYLFFGPQGSEPEILTGFL 555 (569)
T ss_pred CCC-----CC--EEEEECCCCCcCcCCccee
Confidence 877 88 9999999998766655543
No 156
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00021 Score=53.17 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=70.3
Q ss_pred cCCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030 92 FKGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG 168 (215)
Q Consensus 92 ~~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g 168 (215)
-.+|+.++.|- ...|++|.+.-..+ .++++-+++ .+.++.+...+.+.+.-. ..-..-.-...++++.|+
T Consensus 40 ~~~Kylllmfe-s~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~-----~g~kee~~s~~ELa~kf~ 112 (182)
T COG2143 40 PNDKYLLLMFE-SNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFK-----VGDKEEKMSTEELAQKFA 112 (182)
T ss_pred ccCcEEEEEEc-CCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEee-----cCceeeeecHHHHHHHhc
Confidence 36799999999 99999997655544 445555554 477777765333211000 000001112358999999
Q ss_pred CCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 169 VPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 169 ~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
++. .| +.++.|++|+-+...+|-.+++ ..-.+++.+.
T Consensus 113 vrs-----tP--tfvFfdk~Gk~Il~lPGY~ppe-~Fl~vlkYVa 149 (182)
T COG2143 113 VRS-----TP--TFVFFDKTGKTILELPGYMPPE-QFLAVLKYVA 149 (182)
T ss_pred ccc-----Cc--eEEEEcCCCCEEEecCCCCCHH-HHHHHHHHHH
Confidence 997 78 9999999999999999876554 3555666554
No 157
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00016 Score=62.47 Aligned_cols=66 Identities=20% Similarity=0.394 Sum_probs=51.6
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.++..+|.|| ++||++|.+..+.+.++...+++. +.+..|. .+.+..+.+.|++++
T Consensus 46 ~~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd---------------------~~~~~~~~~~y~i~g- 101 (383)
T KOG0191|consen 46 DDSPWLVEFY-APWCGHCKKLAPTYKKLAKALKGK-VKIGAVD---------------------CDEHKDLCEKYGIQG- 101 (383)
T ss_pred cCCceEEEEE-CCCCcchhhhchHHHHHHHHhcCc-eEEEEeC---------------------chhhHHHHHhcCCcc-
Confidence 3578999999 999999999999999998888862 4444454 245567888888887
Q ss_pred CCCCCCccEEEEEcCC
Q 028030 173 FFGSLPGRQTYILDKN 188 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~ 188 (215)
.| +..++.++
T Consensus 102 ----fP--tl~~f~~~ 111 (383)
T KOG0191|consen 102 ----FP--TLKVFRPG 111 (383)
T ss_pred ----Cc--EEEEEcCC
Confidence 88 67767655
No 158
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=97.63 E-value=0.00015 Score=53.47 Aligned_cols=141 Identities=20% Similarity=0.347 Sum_probs=88.6
Q ss_pred ccCCCCCCCCCeEEeC-----CCC-----CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHH-HHHHHcCcEEEE-
Q 028030 66 AKVSKGQAPPSFTLKD-----QEG-----RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY-EKFKKAGAEVIG- 133 (215)
Q Consensus 66 ~~~~~g~~~P~f~l~~-----~~g-----~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~-~~~~~~~v~vv~- 133 (215)
-+++.|.++|..-+.+ .+| +.+.-+++.||+.+|.-. +--...-.+..+-+..+. .+++....+-..
T Consensus 21 Hnlq~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hi-AGRtsaKE~Na~lieaIk~a~fp~~~YQTTTI 99 (184)
T COG3054 21 HNLQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHI-AGRTSAKEKNATLIEAIKSAKFPHDRYQTTTI 99 (184)
T ss_pred hhcccCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhh-hcccchhhhchHHHHHHHhccCChHHceeeEE
Confidence 3567777777665543 233 445557788999999988 554444444555555543 244433455555
Q ss_pred EeCCCHH-----HHHHHHHHcC--CCe-EEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccH
Q 028030 134 ISGDDSS-----SHKAFAKKYR--LPY-TLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHI 205 (215)
Q Consensus 134 vs~d~~~-----~~~~~~~~~~--~~~-~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~ 205 (215)
|+.||+- -++.-++..+ ++| .++.|..+....+|++..+ ...++++|++|+|.+...|... +..+
T Consensus 100 iN~DDAi~GtgmFVkssae~~Kke~pwSq~vlD~~gvak~AWqL~e~------~SaivVlDk~G~VkfvkeGaLt-~aev 172 (184)
T COG3054 100 INTDDAIPGTGMFVKSSAESNKKEYPWSQFVLDSNGVAKNAWQLKEE------SSAVVVLDKDGRVKFVKEGALT-QAEV 172 (184)
T ss_pred eccCCccccccceeecchhhccccCCceeeEEccchhhhhhhccccc------cceEEEEcCCCcEEEEecCCcc-HHHH
Confidence 5666641 2233333222 333 3567888866779999853 3389999999999999988654 4567
Q ss_pred HHHHHHHhc
Q 028030 206 DETLKFLQS 214 (215)
Q Consensus 206 ~~il~~l~~ 214 (215)
++++.+|.+
T Consensus 173 Q~Vi~ll~~ 181 (184)
T COG3054 173 QQVIDLLQK 181 (184)
T ss_pred HHHHHHHHH
Confidence 888887753
No 159
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.57 E-value=0.00057 Score=49.15 Aligned_cols=77 Identities=18% Similarity=0.349 Sum_probs=51.0
Q ss_pred CCCcEEEEEEc------CCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHH-
Q 028030 93 KGKPVVVYFYP------ADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRK- 165 (215)
Q Consensus 93 ~gk~~ll~f~~------a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 165 (215)
.|++++|.|+. .+|||.|....|.+.+.....++ +..+|.|.+.+...++ |++.....
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wk--------------dp~n~fR~~ 82 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWK--------------DPNNPFRTD 82 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC---------------TTSHHHH-
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhC--------------CCCCCceEc
Confidence 46888888882 25999999999999998777544 6899999888776642 45555555
Q ss_pred -HhCCCccCCCCCCccEEEEEcCCCcE
Q 028030 166 -EWGVPADFFGSLPGRQTYILDKNGVV 191 (215)
Q Consensus 166 -~~g~~~~~~g~~p~~~~~lid~~G~v 191 (215)
.+.+.. +| +.+-.+..+++
T Consensus 83 p~~~l~~-----IP--TLi~~~~~~rL 102 (119)
T PF06110_consen 83 PDLKLKG-----IP--TLIRWETGERL 102 (119)
T ss_dssp -CC---S-----SS--EEEECTSS-EE
T ss_pred ceeeeee-----cc--eEEEECCCCcc
Confidence 578887 99 88888766553
No 160
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00023 Score=62.69 Aligned_cols=41 Identities=29% Similarity=0.444 Sum_probs=35.1
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEE
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGI 134 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~v 134 (215)
.+|-|||.|+ |.||++|++..|.+++|+++|++. ++.|.-+
T Consensus 383 e~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~~~vviAKm 424 (493)
T KOG0190|consen 383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDDENVVIAKM 424 (493)
T ss_pred cccceEEEEc-CcccchhhhhhhHHHHHHHHhcCCCCcEEEEe
Confidence 4688999999 999999999999999999999986 4444445
No 161
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.51 E-value=0.00068 Score=48.56 Aligned_cols=92 Identities=21% Similarity=0.239 Sum_probs=56.6
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
+.+.+||.|+ ++| |.|.+ +|...+|+.++.+. .+.|--|..++..+ .++.++...||+.
T Consensus 17 ~~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~----------------~~~~~L~~~y~I~ 77 (116)
T cd03007 17 KFKYSLVKFD-TAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGE----------------KLNMELGERYKLD 77 (116)
T ss_pred cCCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccc----------------hhhHHHHHHhCCC
Confidence 3578999999 955 34444 47778888777543 24444466544211 1246788999998
Q ss_pred --ccCCCCCCccEEEEEcCCCc--EEEEEeCCCCCCccHHHHHHHHhc
Q 028030 171 --ADFFGSLPGRQTYILDKNGV--VQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 171 --~~~~g~~p~~~~~lid~~G~--v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
+ .| ++.++. +|. -...+.|. +...+.|++.|++
T Consensus 78 ~~g-----yP--Tl~lF~-~g~~~~~~~Y~G~---~r~~~~lv~~v~~ 114 (116)
T cd03007 78 KES-----YP--VIYLFH-GGDFENPVPYSGA---DVTVDALQRFLKG 114 (116)
T ss_pred cCC-----CC--EEEEEe-CCCcCCCccCCCC---cccHHHHHHHHHh
Confidence 6 89 777775 553 11234442 2566777777654
No 162
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=97.43 E-value=0.00037 Score=50.19 Aligned_cols=107 Identities=22% Similarity=0.381 Sum_probs=70.7
Q ss_pred ecCCcCCCc-EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 028030 88 SLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKE 166 (215)
Q Consensus 88 ~l~~~~gk~-~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (215)
.|+++++|. +||+|-+...-+..+.++..|.+....+.++.+.++.+..+...... ..+-......+.+.
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~---------~~~~~~~~~~lr~~ 72 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG---------KPLSPEDIQALRKR 72 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc---------CcCCHHHHHHHHHH
Confidence 356677754 55555545566677888889988888888888888888654432211 11111223567888
Q ss_pred hCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 167 WGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 167 ~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
|++..+ .+.++||++||.+..++....+ .+++.+.|+
T Consensus 73 l~~~~~------~f~~vLiGKDG~vK~r~~~p~~----~~~lf~~ID 109 (118)
T PF13778_consen 73 LRIPPG------GFTVVLIGKDGGVKLRWPEPID----PEELFDTID 109 (118)
T ss_pred hCCCCC------ceEEEEEeCCCcEEEecCCCCC----HHHHHHHHh
Confidence 887642 2489999999999999877543 455555554
No 163
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.40 E-value=0.0013 Score=52.97 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=58.9
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEE--eC---CC--------------H-HHHHHHHHHcCCC
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGI--SG---DD--------------S-SSHKAFAKKYRLP 152 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v--s~---d~--------------~-~~~~~~~~~~~~~ 152 (215)
.||.+|++|. -..||+|++..+.+.++.+ .|++|..+ .. .+ + +.+.+++.....+
T Consensus 106 ~~k~~I~vFt-Dp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~ 180 (232)
T PRK10877 106 QEKHVITVFT-DITCGYCHKLHEQMKDYNA----LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS 180 (232)
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHhc----CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence 5789999999 9999999999988877632 45666554 32 11 1 1222222222221
Q ss_pred eE---EEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHH
Q 028030 153 YT---LLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKF 211 (215)
Q Consensus 153 ~~---~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~ 211 (215)
-. ...+.+.++.+.+|+.+ .| +++ + +||+++ .|.. +.+.++++++.
T Consensus 181 ~~~c~~~v~~~~~la~~lgi~g-----TP--tiv-~-~~G~~~---~G~~-~~~~L~~~l~~ 229 (232)
T PRK10877 181 PASCDVDIADHYALGVQFGVQG-----TP--AIV-L-SNGTLV---PGYQ-GPKEMKAFLDE 229 (232)
T ss_pred cccccchHHHhHHHHHHcCCcc-----cc--EEE-E-cCCeEe---eCCC-CHHHHHHHHHH
Confidence 11 11234567888999997 88 554 4 578775 4432 23345555543
No 164
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.39 E-value=0.00074 Score=55.60 Aligned_cols=88 Identities=22% Similarity=0.379 Sum_probs=61.7
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA 171 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 171 (215)
...++|+|+ |+||+..+...|.+.+.+++++++ .-++|.-.+| +|.+..++..|.+..
T Consensus 13 ~elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VD-------------------cd~e~~ia~ky~I~K 72 (375)
T KOG0912|consen 13 NELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVD-------------------CDKEDDIADKYHINK 72 (375)
T ss_pred ceEEeeeee-hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcc-------------------cchhhHHhhhhcccc
Confidence 468999999 999999999999999998888865 1223322222 355668888999987
Q ss_pred cCCCCCCccEEEEEcCCCcEEEE-EeCCCCCCccHHHHHHHHh
Q 028030 172 DFFGSLPGRQTYILDKNGVVQLI-YNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 172 ~~~g~~p~~~~~lid~~G~v~~~-~~g~~~~~~~~~~il~~l~ 213 (215)
.| ++=|+ .+|.+..+ |.|. ..++.+++.++
T Consensus 73 -----yP--TlKvf-rnG~~~~rEYRg~----RsVeaL~efi~ 103 (375)
T KOG0912|consen 73 -----YP--TLKVF-RNGEMMKREYRGQ----RSVEALIEFIE 103 (375)
T ss_pred -----Cc--eeeee-eccchhhhhhccc----hhHHHHHHHHH
Confidence 88 55555 78887763 6664 33445555443
No 165
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.37 E-value=0.00045 Score=56.33 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=53.7
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe--C---CCH-------------HHHHHHHHHcCC---
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS--G---DDS-------------SSHKAFAKKYRL--- 151 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs--~---d~~-------------~~~~~~~~~~~~--- 151 (215)
.+|.+|++|. -..||+|++..+.+.++.+. . ++++..+. . ++. +.+..+...+..
T Consensus 116 ~ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~~-g--~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 116 DAPRIVYVFA-DPNCPYCKQFWQQARPWVDS-G--KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHhhc-C--ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 4678999999 99999999999998876543 1 25544432 1 221 112222221111
Q ss_pred CeEE--------EEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEE
Q 028030 152 PYTL--------LSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQ 192 (215)
Q Consensus 152 ~~~~--------~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~ 192 (215)
.... ..+.+.++...+|+.+ .| ++|+.|.+|++.
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~G-----TP--aiv~~d~~G~~~ 233 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGANA-----TP--AIYYMDKDGTLQ 233 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCC-----CC--EEEEECCCCCEE
Confidence 0110 0122445788899987 88 899999999764
No 166
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.31 E-value=0.0021 Score=47.04 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=52.1
Q ss_pred EEEEEEcCCC--ChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCC
Q 028030 97 VVVYFYPADE--TPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFF 174 (215)
Q Consensus 97 ~ll~f~~a~~--C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~ 174 (215)
..+.|++++- ++-+....-.|.++.++|.+..+.+.-|.. |.+.+++..||+..
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDi---------------------D~~~~LA~~fgV~s--- 91 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADL---------------------EQSEAIGDRFGVFR--- 91 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEEC---------------------CCCHHHHHHcCCcc---
Confidence 4444442332 344556666777777777533366666664 56678999999998
Q ss_pred CCCCccEEEEEcCCCcEEEEEeCCCCC
Q 028030 175 GSLPGRQTYILDKNGVVQLIYNNQFQP 201 (215)
Q Consensus 175 g~~p~~~~~lid~~G~v~~~~~g~~~~ 201 (215)
+| +++++ +||+++....|..+-
T Consensus 92 --iP--TLl~F-kdGk~v~~i~G~~~k 113 (132)
T PRK11509 92 --FP--ATLVF-TGGNYRGVLNGIHPW 113 (132)
T ss_pred --CC--EEEEE-ECCEEEEEEeCcCCH
Confidence 99 66666 899999999985443
No 167
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.28 E-value=0.0023 Score=48.47 Aligned_cols=83 Identities=14% Similarity=0.130 Sum_probs=40.5
Q ss_pred cCCCcEEEEEEcCCCChhhHHHHH-HHHH--HHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030 92 FKGKPVVVYFYPADETPGCTKQAC-AFRD--SYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG 168 (215)
Q Consensus 92 ~~gk~~ll~f~~a~~C~~C~~~~~-~l~~--l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g 168 (215)
-.+|+++|.+. ++||..|..... .++. +++-+-+ .+.-|-|..+...++...... ......|
T Consensus 35 ~e~KpIfl~ig-~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~Pdid~~y~~-------------~~~~~~~ 99 (163)
T PF03190_consen 35 KENKPIFLSIG-YSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREERPDIDKIYMN-------------AVQAMSG 99 (163)
T ss_dssp HHT--EEEEEE--TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT-HHHHHHHHH-------------HHHHHHS
T ss_pred hcCCcEEEEEE-ecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccCccHHHHHHH-------------HHHHhcC
Confidence 35799999999 999999986544 2222 3222222 244444444444443333322 0111114
Q ss_pred CCccCCCCCCccEEEEEcCCCcEEEEEe
Q 028030 169 VPADFFGSLPGRQTYILDKNGVVQLIYN 196 (215)
Q Consensus 169 ~~~~~~g~~p~~~~~lid~~G~v~~~~~ 196 (215)
..+ .| .+++++++|+..+...
T Consensus 100 ~gG-----wP--l~vfltPdg~p~~~~t 120 (163)
T PF03190_consen 100 SGG-----WP--LTVFLTPDGKPFFGGT 120 (163)
T ss_dssp --------SS--EEEEE-TTS-EEEEES
T ss_pred CCC-----CC--ceEEECCCCCeeeeee
Confidence 433 89 9999999999987643
No 168
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.20 E-value=0.0029 Score=40.53 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=25.1
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS 139 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~ 139 (215)
+..|+ +.||++|+...+.|.+ .++.+..++.++.
T Consensus 2 i~lf~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~ 35 (74)
T TIGR02196 2 VKVYT-TPWCPPCKKAKEYLTS-------KGIAFEEIDVEKD 35 (74)
T ss_pred EEEEc-CCCChhHHHHHHHHHH-------CCCeEEEEeccCC
Confidence 45566 9999999987766654 4688888877543
No 169
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.16 E-value=0.0015 Score=42.59 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=24.4
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS 139 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~ 139 (215)
+..|| +.||++|++..+.|.++ ++.+-.++++..
T Consensus 2 v~ly~-~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~ 35 (77)
T TIGR02200 2 ITVYG-TTWCGYCAQLMRTLDKL-------GAAYEWVDIEED 35 (77)
T ss_pred EEEEE-CCCChhHHHHHHHHHHc-------CCceEEEeCcCC
Confidence 56788 99999999987766544 566656666543
No 170
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.84 E-value=0.005 Score=40.51 Aligned_cols=69 Identities=20% Similarity=0.392 Sum_probs=40.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEE
Q 028030 104 ADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTY 183 (215)
Q Consensus 104 a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~ 183 (215)
+.+|+.|......+++...++. +.+-.+...+ ..++ ..||+.. +| .+
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~~---i~~ei~~~~~---------------------~~~~-~~ygv~~-----vP---al 53 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEELG---IEVEIIDIED---------------------FEEI-EKYGVMS-----VP---AL 53 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHTT---EEEEEEETTT---------------------HHHH-HHTT-SS-----SS---EE
T ss_pred CCCCCCcHHHHHHHHHHHHhcC---CeEEEEEccC---------------------HHHH-HHcCCCC-----CC---EE
Confidence 7779999988888888776663 3332222221 2234 7899987 89 44
Q ss_pred EEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030 184 ILDKNGVVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 184 lid~~G~v~~~~~g~~~~~~~~~~il~~l 212 (215)
+|| |+++ +.|.. ...+++.++|
T Consensus 54 vIn--g~~~--~~G~~---p~~~el~~~l 75 (76)
T PF13192_consen 54 VIN--GKVV--FVGRV---PSKEELKELL 75 (76)
T ss_dssp EET--TEEE--EESS-----HHHHHHHHH
T ss_pred EEC--CEEE--EEecC---CCHHHHHHHh
Confidence 675 8875 55533 2234555544
No 171
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.80 E-value=0.001 Score=59.04 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=34.3
Q ss_pred CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-C-cEEEEEeCCCH
Q 028030 95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-G-AEVIGISGDDS 139 (215)
Q Consensus 95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~-v~vv~vs~d~~ 139 (215)
|.-||.|+ ++||+.|+...|.++++++.+.+= + +.|.+|..-++
T Consensus 58 ~~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~ 103 (606)
T KOG1731|consen 58 KAKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE 103 (606)
T ss_pred hhHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch
Confidence 57899999 999999999999999999888752 3 44445655333
No 172
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.66 E-value=0.0069 Score=47.39 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=50.8
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-H----------------HHHHHHHHHcCC--Ce
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-S----------------SSHKAFAKKYRL--PY 153 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-~----------------~~~~~~~~~~~~--~~ 153 (215)
.++++|++|. ...|++|++..+.+.+ ...+-.+.++.+.... + +.+.++...... +.
T Consensus 76 ~~~~~i~~f~-D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 76 NGKRVVYVFT-DPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCCEEEEEEE-CCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 4789999999 9999999999998877 1111234555554322 1 122222222222 11
Q ss_pred ---EEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEE
Q 028030 154 ---TLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQ 192 (215)
Q Consensus 154 ---~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~ 192 (215)
..-.+.+.++...+|+.+ +| ++ ++ ++|+++
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~g-----tP--ti-i~-~~G~~~ 184 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNG-----TP--TI-VL-ADGRVV 184 (197)
T ss_pred cccCchHHHHHHHHHHcCCCc-----cc--EE-EE-CCCeEe
Confidence 111234557888899987 89 54 45 468763
No 173
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.45 E-value=0.0064 Score=46.32 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=33.6
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS 135 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs 135 (215)
.++++|+.|+ ...||+|....+.+.++..++++ ++.+..+.
T Consensus 14 ~~~~~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFF-SYGCPHCYNFEPILEAWVKKLPK-DVKFEKVP 54 (178)
T ss_pred CCCcEEEEEE-CCCCcchhhhhHHHHHHHHhCCC-CceEEEcC
Confidence 5789999999 89999999999999999888854 46665443
No 174
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.43 E-value=0.028 Score=34.92 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=29.3
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK 147 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~ 147 (215)
|+.|. ..+|+.|......| ++.|+.+-.+.+++.++.++.++
T Consensus 1 V~vy~-~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~~l~ 42 (60)
T PF00462_consen 1 VVVYT-KPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEAREELK 42 (60)
T ss_dssp EEEEE-STTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHHHHH
T ss_pred cEEEE-cCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHHHHH
Confidence 45677 89999999876555 44578888888776544444443
No 175
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.29 E-value=0.025 Score=44.68 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=30.6
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEe
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGIS 135 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs 135 (215)
.|++.|+.|+ .-.||+|....+.+ ..+.+.+++ ++.++-+.
T Consensus 36 ~~~~~VvEff-dy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~ 79 (207)
T PRK10954 36 AGEPQVLEFF-SFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYH 79 (207)
T ss_pred CCCCeEEEEe-CCCCccHHHhcccccchHHHHHhCCC-CCeEEEec
Confidence 4788899999 99999999887765 667777664 45655443
No 176
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.17 E-value=0.021 Score=37.68 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=30.3
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-HHHHHHHH
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-SSSHKAFA 146 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-~~~~~~~~ 146 (215)
|+.|+ ++||++|....+.|.++. .+ ..+.++-|+.++ .+.+++++
T Consensus 1 V~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~~~~~~~~~l 46 (84)
T TIGR02180 1 VVVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLSNGSEIQDYL 46 (84)
T ss_pred CEEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCCChHHHHHHH
Confidence 46677 999999999999998875 22 126777776643 34444433
No 177
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.016 Score=41.27 Aligned_cols=75 Identities=17% Similarity=0.325 Sum_probs=52.3
Q ss_pred CCc-CCCcEEEEEEcC-------CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCCh
Q 028030 90 SKF-KGKPVVVYFYPA-------DETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGN 161 (215)
Q Consensus 90 ~~~-~gk~~ll~f~~a-------~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~ 161 (215)
++. +|+.+.+.|... +|||.|.+..|.+.+-.++..+ ++.||-|-+.+.+.| -|++.
T Consensus 20 ~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~rp~W--------------k~p~n 84 (128)
T KOG3425|consen 20 KNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGNRPYW--------------KDPAN 84 (128)
T ss_pred HHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecCCCcc--------------cCCCC
Confidence 344 677788888733 5999999999999998775554 599999987766543 25555
Q ss_pred hHHHHhCC-CccCCCCCCccEEEEEc
Q 028030 162 KVRKEWGV-PADFFGSLPGRQTYILD 186 (215)
Q Consensus 162 ~~~~~~g~-~~~~~g~~p~~~~~lid 186 (215)
.+....++ .. +| +..=.+
T Consensus 85 ~FR~d~~~lt~-----vP--TLlrw~ 103 (128)
T KOG3425|consen 85 PFRKDPGILTA-----VP--TLLRWK 103 (128)
T ss_pred ccccCCCceee-----cc--eeeEEc
Confidence 56666666 33 77 555554
No 178
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.026 Score=48.81 Aligned_cols=42 Identities=24% Similarity=0.239 Sum_probs=34.8
Q ss_pred CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-cCcEEEEEeCC
Q 028030 95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKK-AGAEVIGISGD 137 (215)
Q Consensus 95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d 137 (215)
...+|.|+ +.||++|+..++.+.++...++. .++.+..+..+
T Consensus 163 ~~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 163 ADWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred cceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 56888888 99999999999999999998874 46777777654
No 179
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=96.09 E-value=0.15 Score=38.85 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=71.5
Q ss_pred CCCCCCeEEeC-CCCCeeecCCc---CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc----------------CcE
Q 028030 71 GQAPPSFTLKD-QEGRNVSLSKF---KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA----------------GAE 130 (215)
Q Consensus 71 g~~~P~f~l~~-~~g~~~~l~~~---~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~----------------~v~ 130 (215)
|..+|++.+.. .||+++.|.+. .|++-|++|- ++-- +......|.++.+.+... -++
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFa-gd~~--~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 77 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFA-GDIA--PAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSVFD 77 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEc-CCCC--chhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCcEE
Confidence 56788888776 68999988764 6899999997 4432 233444555555544221 266
Q ss_pred EEEEeCCCH-----HHHHHHH----HHcCCCeE-EEEcCC------hhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEE
Q 028030 131 VIGISGDDS-----SSHKAFA----KKYRLPYT-LLSDEG------NKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194 (215)
Q Consensus 131 vv~vs~d~~-----~~~~~~~----~~~~~~~~-~~~d~~------~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~ 194 (215)
++.|..... ..+-+.+ ...++.+. ++.|.. +...+.||+..+ .. .++++-|||-|-+.
T Consensus 78 ~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~gv~~~----~g--~vvvvRPDgyVg~~ 151 (167)
T cd02979 78 VVTIHAAPRREIELLDLPAVLRPFGEKKGWDYEKIYADDDSYHEGHGDAYEKYGIDPE----RG--AVVVVRPDQYVALV 151 (167)
T ss_pred EEEEecCCccccchhhCcHhhcCCCCccccceeeEEecCccccCCcccHHHhhCCCCC----CC--CEEEECCCCeEEEE
Confidence 666654321 1222222 33345543 455543 568999998742 34 79999999988654
Q ss_pred E
Q 028030 195 Y 195 (215)
Q Consensus 195 ~ 195 (215)
.
T Consensus 152 ~ 152 (167)
T cd02979 152 G 152 (167)
T ss_pred e
Confidence 3
No 180
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.97 E-value=0.044 Score=36.68 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=30.3
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~ 138 (215)
|..|. .+||+.|.+....|.++..++. |+.+.-++.+.
T Consensus 3 v~iy~-~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFG-RPGCPYCVRAKELAEKLSEERD--DFDYRYVDIHA 40 (85)
T ss_pred EEEEe-CCCChhHHHHHHHHHhhccccc--CCcEEEEECCC
Confidence 56667 9999999999999999987653 67777777653
No 181
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.92 E-value=0.049 Score=34.53 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=22.8
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~ 138 (215)
++.|. ..||+.|......|.+ .++.+..+..|.
T Consensus 2 v~l~~-~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~ 34 (73)
T cd02976 2 VTVYT-KPDCPYCKATKRFLDE-------RGIPFEEVDVDE 34 (73)
T ss_pred EEEEe-CCCChhHHHHHHHHHH-------CCCCeEEEeCCC
Confidence 34556 8999999986655544 367777777654
No 182
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=95.90 E-value=0.017 Score=47.69 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=47.6
Q ss_pred CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEE-Ec--CChhHHHHhCCCc
Q 028030 95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLL-SD--EGNKVRKEWGVPA 171 (215)
Q Consensus 95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~-~d--~~~~~~~~~g~~~ 171 (215)
...+|.|| +.||..|++..|...+.--++++.|. +..+- .| .-..++..||+++
T Consensus 44 diW~VdFY-APWC~HCKkLePiWdeVG~elkdig~----------------------PikVGKlDaT~f~aiAnefgiqG 100 (468)
T KOG4277|consen 44 DIWFVDFY-APWCAHCKKLEPIWDEVGHELKDIGL----------------------PIKVGKLDATRFPAIANEFGIQG 100 (468)
T ss_pred CeEEEEee-chhhhhcccccchhHHhCcchhhcCC----------------------ceeecccccccchhhHhhhccCC
Confidence 46899999 99999999998888877555555432 22221 12 2346889999998
Q ss_pred cCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030 172 DFFGSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 172 ~~~g~~p~~~~~lid~~G~v~~~~~g 197 (215)
.| ++-++ ++|-++ .+.|
T Consensus 101 -----YP--TIk~~-kgd~a~-dYRG 117 (468)
T KOG4277|consen 101 -----YP--TIKFF-KGDHAI-DYRG 117 (468)
T ss_pred -----Cc--eEEEe-cCCeee-ecCC
Confidence 99 55555 555554 3444
No 183
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.87 E-value=0.05 Score=35.92 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=27.0
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS 139 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~ 139 (215)
.+..|+.|. .+||+.|.+....|. +.|+.+..+.++..
T Consensus 6 ~~~~V~ly~-~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~ 43 (79)
T TIGR02190 6 KPESVVVFT-KPGCPFCAKAKATLK-------EKGYDFEEIPLGND 43 (79)
T ss_pred CCCCEEEEE-CCCCHhHHHHHHHHH-------HcCCCcEEEECCCC
Confidence 345566777 999999998866664 34677777776544
No 184
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.73 E-value=0.04 Score=41.10 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=37.9
Q ss_pred eeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHH--HHcCcEEEEEeC
Q 028030 86 NVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKF--KKAGAEVIGISG 136 (215)
Q Consensus 86 ~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~--~~~~v~vv~vs~ 136 (215)
.+.+.+-.++++|+.|+ ...||+|.+..+.+.++.+++ ++ .+.++.+..
T Consensus 4 ~~~~G~~~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~ 54 (162)
T PF13462_consen 4 DPTIGNPDAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV 54 (162)
T ss_dssp SEEES-TTTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred CCeecCCCCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence 34555556788999999 999999999999999999998 33 488887765
No 185
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.63 E-value=0.081 Score=35.27 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=24.8
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHH
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~ 140 (215)
+..|. ..||++|......| .++|+.+-.+.++...
T Consensus 3 v~lYt-~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~~ 37 (81)
T PRK10329 3 ITIYT-RNDCVQCHATKRAM-------ESRGFDFEMINVDRVP 37 (81)
T ss_pred EEEEe-CCCCHhHHHHHHHH-------HHCCCceEEEECCCCH
Confidence 44566 89999999876555 3457888777776443
No 186
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.50 E-value=0.074 Score=33.46 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=28.1
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK 147 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~ 147 (215)
++.|. ..||+.|+.....|.+. ++.+.-+..+.....+++++
T Consensus 2 v~ly~-~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~ 43 (72)
T cd02066 2 VVVFS-KSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELK 43 (72)
T ss_pred EEEEE-CCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHH
Confidence 45566 89999999887776654 47777777765443444443
No 187
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.44 E-value=0.022 Score=41.93 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=30.5
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEE
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG 133 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~ 133 (215)
.++++|+.|+ ..+||+|....+.+.++..++.+ +.++.
T Consensus 4 ~a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~ 41 (154)
T cd03023 4 NGDVTIVEFF-DYNCGYCKKLAPELEKLLKEDPD--VRVVF 41 (154)
T ss_pred CCCEEEEEEE-CCCChhHHHhhHHHHHHHHHCCC--ceEEE
Confidence 3688999999 99999999999999998777653 44443
No 188
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.27 E-value=0.089 Score=33.95 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=23.4
Q ss_pred EEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHH
Q 028030 100 YFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140 (215)
Q Consensus 100 ~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~ 140 (215)
.|. ..+|+.|.+....|.+ .|+.+-.+.++...
T Consensus 3 ly~-~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~~~ 35 (72)
T TIGR02194 3 VYS-KNNCVQCKMTKKALEE-------HGIAFEEINIDEQP 35 (72)
T ss_pred EEe-CCCCHHHHHHHHHHHH-------CCCceEEEECCCCH
Confidence 455 8999999988776654 47777777765443
No 189
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.26 E-value=0.17 Score=35.54 Aligned_cols=76 Identities=21% Similarity=0.297 Sum_probs=48.6
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
.++++|+=- ++.|+.....+..|++.++...++ +.+..|.+-... +-...++..||+..+
T Consensus 19 ~~~~~iFKH-St~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R-----------------~vSn~IAe~~~V~He- 78 (105)
T PF11009_consen 19 EKPVLIFKH-STRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYR-----------------PVSNAIAEDFGVKHE- 78 (105)
T ss_dssp -SEEEEEEE--TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGH-----------------HHHHHHHHHHT-----
T ss_pred cCcEEEEEe-CCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCc-----------------hhHHHHHHHhCCCcC-
Confidence 466776666 888999999999999988887764 777766542221 124578889999863
Q ss_pred CCCCCccEEEEEcCCCcEEEEE
Q 028030 174 FGSLPGRQTYILDKNGVVQLIY 195 (215)
Q Consensus 174 ~g~~p~~~~~lid~~G~v~~~~ 195 (215)
-| .++|| +||++++.-
T Consensus 79 ---SP--Q~ili-~~g~~v~~a 94 (105)
T PF11009_consen 79 ---SP--QVILI-KNGKVVWHA 94 (105)
T ss_dssp ---SS--EEEEE-ETTEEEEEE
T ss_pred ---CC--cEEEE-ECCEEEEEC
Confidence 45 99999 699998764
No 190
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=94.86 E-value=0.12 Score=33.92 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=24.7
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~ 138 (215)
|+.|. ..|||.|......|.++.. .++++-+..++
T Consensus 2 v~~y~-~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~ 36 (82)
T cd03419 2 VVVFS-KSYCPYCKRAKSLLKELGV-----KPAVVELDQHE 36 (82)
T ss_pred EEEEE-cCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence 45566 9999999988888777633 35666666543
No 191
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=94.72 E-value=0.37 Score=39.61 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=49.9
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
+.+|||.|| ...++.|...-..|..|+.+|+. +.|+-|.... - .+...|....
T Consensus 146 ~~~VVVHiY-~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~---------------------~-~~~~~f~~~~-- 198 (265)
T PF02114_consen 146 STWVVVHIY-EPGFPRCEIMNSCLECLARKYPE--VKFVKIRASK---------------------C-PASENFPDKN-- 198 (265)
T ss_dssp T-EEEEEEE--TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECG---------------------C-CTTTTS-TTC--
T ss_pred CcEEEEEEE-eCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhc---------------------c-CcccCCcccC--
Confidence 456888888 99999999999999999999994 8888775311 0 1334455554
Q ss_pred CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 174 FGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 174 ~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+| +++++ ++|.++..+.+-
T Consensus 199 ---LP--tllvY-k~G~l~~~~V~l 217 (265)
T PF02114_consen 199 ---LP--TLLVY-KNGDLIGNFVGL 217 (265)
T ss_dssp ----S--EEEEE-ETTEEEEEECTG
T ss_pred ---CC--EEEEE-ECCEEEEeEEeh
Confidence 89 55555 799999998773
No 192
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=94.71 E-value=0.46 Score=37.08 Aligned_cols=83 Identities=16% Similarity=0.291 Sum_probs=57.3
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe-CCCHHHHHHHHHHcCCCeE------EEEcCChhHHHH
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS-GDDSSSHKAFAKKYRLPYT------LLSDEGNKVRKE 166 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs-~d~~~~~~~~~~~~~~~~~------~~~d~~~~~~~~ 166 (215)
+.-.+.+|. -..|+.|...+..+.. .+..+.|..|. ..+.+.++.|+..++++.. +-...+.--+..
T Consensus 108 ~~~rlalFv-kd~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~ 181 (200)
T TIGR03759 108 GGGRLALFV-KDDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQ 181 (200)
T ss_pred CCCeEEEEe-CCCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecCcchHHH
Confidence 345788888 5899999988877733 23457777774 5788999999999999732 223334455677
Q ss_pred hCCCccCCCCCCccEEEEEcCCC
Q 028030 167 WGVPADFFGSLPGRQTYILDKNG 189 (215)
Q Consensus 167 ~g~~~~~~g~~p~~~~~lid~~G 189 (215)
||+.+ .+| ++|...+|
T Consensus 182 lg~~g----~lP---~~l~q~~g 197 (200)
T TIGR03759 182 LGLQG----QLP---AVVQQVNG 197 (200)
T ss_pred ccCCC----CCC---EEEEecCC
Confidence 78754 388 44555555
No 193
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=94.58 E-value=0.024 Score=43.38 Aligned_cols=109 Identities=17% Similarity=0.278 Sum_probs=60.2
Q ss_pred cccccCCCCCCCCCeEEeC-CCCCeeecCCc---CCCcEEEEEEcCCCChhhHHHHHHHHHHH-------HHHHHc----
Q 028030 63 SISAKVSKGQAPPSFTLKD-QEGRNVSLSKF---KGKPVVVYFYPADETPGCTKQACAFRDSY-------EKFKKA---- 127 (215)
Q Consensus 63 ~~~~~~~~g~~~P~f~l~~-~~g~~~~l~~~---~gk~~ll~f~~a~~C~~C~~~~~~l~~l~-------~~~~~~---- 127 (215)
.....+.+|..+|+..+.. .||+++.|.+. .|++-|++|-...-.+.+...+..|.+.. .+|...
T Consensus 25 ~~a~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~ 104 (169)
T PF07976_consen 25 SLAGGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDP 104 (169)
T ss_dssp GGBTTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-T
T ss_pred ccccCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCC
Confidence 3457889999999999876 79999999874 69999999983333444444444444432 233322
Q ss_pred --CcEEEEEeCCC---------HHHHHHHHHHcCCC-eEEEEcC------ChhHHHHhCCCc
Q 028030 128 --GAEVIGISGDD---------SSSHKAFAKKYRLP-YTLLSDE------GNKVRKEWGVPA 171 (215)
Q Consensus 128 --~v~vv~vs~d~---------~~~~~~~~~~~~~~-~~~~~d~------~~~~~~~~g~~~ 171 (215)
-++++.|.... ++..+.+..++++. +.++.|. .+++++.||+..
T Consensus 105 ~s~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~ 166 (169)
T PF07976_consen 105 DSVFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDR 166 (169)
T ss_dssp TSSEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBT
T ss_pred CCeeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCc
Confidence 27888886432 22233333344554 4455554 477888888754
No 194
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.55 E-value=0.16 Score=34.15 Aligned_cols=37 Identities=19% Similarity=0.046 Sum_probs=25.5
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD 137 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d 137 (215)
|+.|. .+||++|.+....|.++..++. ++.+.-+..+
T Consensus 2 V~vys-~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFG-RPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEe-CCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 34555 8999999998888887754433 4556666554
No 195
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.35 E-value=0.22 Score=45.33 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=52.0
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
++..+-+|. +.+|+.|......+++++.+.+ ++..-.|.. ....++...|++..
T Consensus 476 ~~~~i~v~~-~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~---------------------~~~~~~~~~~~v~~-- 529 (555)
T TIGR03143 476 KPVNIKIGV-SLSCTLCPDVVLAAQRIASLNP--NVEAEMIDV---------------------SHFPDLKDEYGIMS-- 529 (555)
T ss_pred CCeEEEEEE-CCCCCCcHHHHHHHHHHHHhCC--CceEEEEEC---------------------cccHHHHHhCCcee--
Confidence 344566677 9999999998888888877765 355444432 22356777899987
Q ss_pred CCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030 174 FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 174 ~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l 212 (215)
+| .++|| |+++ +.|.. ..++++..|
T Consensus 530 ---vP---~~~i~--~~~~--~~G~~----~~~~~~~~~ 554 (555)
T TIGR03143 530 ---VP---AIVVD--DQQV--YFGKK----TIEEMLELI 554 (555)
T ss_pred ---cC---EEEEC--CEEE--EeeCC----CHHHHHHhh
Confidence 99 55564 5554 44533 345666654
No 196
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.19 Score=33.32 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=27.9
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--CHHHHHHHHHHc
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--DSSSHKAFAKKY 149 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--~~~~~~~~~~~~ 149 (215)
++.|. -++||+|.+....|. .+|+.+.-+..+ ..++.+++++..
T Consensus 3 v~iyt-~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~ 48 (80)
T COG0695 3 VTIYT-KPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRG 48 (80)
T ss_pred EEEEE-CCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHh
Confidence 44555 788999998766555 446666665544 334666666654
No 197
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=94.27 E-value=0.16 Score=33.85 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=26.4
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS 135 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs 135 (215)
|..|+ ...|+.|....+.+.++...... ++++..+.
T Consensus 1 i~~f~-d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~ 36 (98)
T cd02972 1 IVEFF-DPLCPYCYLFEPELEKLLYADDG-GVRVVYRP 36 (98)
T ss_pred CeEEE-CCCCHhHHhhhHHHHHHHhhcCC-cEEEEEec
Confidence 35666 89999999999999998744433 46666554
No 198
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.26 E-value=0.24 Score=31.82 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=23.3
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~ 138 (215)
|..|. .++|+.|......|++ .|+.+..+.++.
T Consensus 2 i~ly~-~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~ 34 (75)
T cd03418 2 VEIYT-KPNCPYCVRAKALLDK-------KGVDYEEIDVDG 34 (75)
T ss_pred EEEEe-CCCChHHHHHHHHHHH-------CCCcEEEEECCC
Confidence 44566 8999999987666654 467777776654
No 199
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.42 E-value=0.18 Score=34.88 Aligned_cols=32 Identities=19% Similarity=0.065 Sum_probs=20.8
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD 137 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d 137 (215)
|+.|. .+|||+|.+....|.++ |+.+-.+.+|
T Consensus 10 Vvvys-k~~Cp~C~~ak~~L~~~-------~i~~~~vdid 41 (99)
T TIGR02189 10 VVIFS-RSSCCMCHVVKRLLLTL-------GVNPAVHEID 41 (99)
T ss_pred EEEEE-CCCCHHHHHHHHHHHHc-------CCCCEEEEcC
Confidence 55666 89999999776555443 4554455544
No 200
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.36 E-value=0.5 Score=32.55 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=28.6
Q ss_pred CCCcEEEEEEc---CCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH
Q 028030 93 KGKPVVVYFYP---ADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK 147 (215)
Q Consensus 93 ~gk~~ll~f~~---a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~ 147 (215)
..+.++|+-.. .+|||+|.+....|.+ .|+.+..+.+++..++++.+.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~~~~~~~~l~ 60 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLEDPEIRQGIK 60 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCCCHHHHHHHH
Confidence 34566666541 2799999987655554 367777776654444444443
No 201
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.05 E-value=0.54 Score=30.09 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=22.6
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~ 138 (215)
|+.|. .+||+.|.+....|.+ .|+.+..+.++.
T Consensus 3 v~lys-~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~~ 35 (72)
T cd03029 3 VSLFT-KPGCPFCARAKAALQE-------NGISYEEIPLGK 35 (72)
T ss_pred EEEEE-CCCCHHHHHHHHHHHH-------cCCCcEEEECCC
Confidence 44555 8999999988666553 466666666654
No 202
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=92.91 E-value=0.37 Score=31.44 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=22.1
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030 99 VYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138 (215)
Q Consensus 99 l~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~ 138 (215)
..|+ ..+|+.|......|++ .|+.+--+.++.
T Consensus 2 ~ly~-~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~ 33 (79)
T TIGR02181 2 TIYT-KPYCPYCTRAKALLSS-------KGVTFTEIRVDG 33 (79)
T ss_pred EEEe-cCCChhHHHHHHHHHH-------cCCCcEEEEecC
Confidence 4566 8999999988766654 356665565543
No 203
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=92.89 E-value=2.3 Score=30.80 Aligned_cols=42 Identities=26% Similarity=0.280 Sum_probs=33.8
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEE-EeCC
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG-ISGD 137 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~-vs~d 137 (215)
..|.++|-|. ..|.|.|.+.=..|.+++++..+ +.+|. |..|
T Consensus 22 ~~rlvViRFG-r~~Dp~C~~mD~~L~~i~~~vsn--fa~Iylvdid 64 (142)
T KOG3414|consen 22 EERLVVIRFG-RDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDID 64 (142)
T ss_pred cceEEEEEec-CCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecc
Confidence 3589999999 99999999999999999998884 55555 4444
No 204
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.16 Score=40.20 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=35.7
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG 136 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~ 136 (215)
.+.-||.|| ++|.+-|+...|-+.+|..+|...++.+=.|.+
T Consensus 144 ~t~WlIeFf-a~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDi 185 (265)
T KOG0914|consen 144 RTYWLIEFF-ACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDI 185 (265)
T ss_pred ceEEEEEEE-eecChhhcccccccHHHHHHhCCCCCcccceee
Confidence 457899999 999999999999999999999877666655543
No 205
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=92.86 E-value=0.8 Score=37.63 Aligned_cols=101 Identities=17% Similarity=0.301 Sum_probs=62.5
Q ss_pred CCCCCCCCeEEeCCCCCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH
Q 028030 69 SKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK 147 (215)
Q Consensus 69 ~~g~~~P~f~l~~~~g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~ 147 (215)
+.=+.+|-|++.|.+|..+-.+.-.| +.+-++|++ . ......+.++++...+.. .+++|+.|+.+....+ +
T Consensus 77 ekL~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~-q--edA~afL~~lk~~~p~l~-~~~kV~pvsL~~vYkl----~ 148 (270)
T TIGR00995 77 KILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFR-Q--EDAEAFLAQLRKRKPEVG-SQAKVVPITLDQVYKL----K 148 (270)
T ss_pred HHhcCCceEEEEcCCCCeEEEECCCCCceEEEEECC-H--HHHHHHHHHHHhhCcccc-CCceEEEEEHHHHHHH----h
Confidence 34478999999999999988876545 555554431 1 224455555544444443 3699999999877655 3
Q ss_pred HcCCCeEEEEcCChhHHHHhCCC---ccCCCCCC
Q 028030 148 KYRLPYTLLSDEGNKVRKEWGVP---ADFFGSLP 178 (215)
Q Consensus 148 ~~~~~~~~~~d~~~~~~~~~g~~---~~~~g~~p 178 (215)
..++.|.++.|+. ++..+.++. .+..+++|
T Consensus 149 ~e~l~F~fiP~~~-qV~~A~~ll~~~~~~~~GVP 181 (270)
T TIGR00995 149 VEGIGFRFLPDPA-QIKNALELPAANSEYFDGVP 181 (270)
T ss_pred hcCccEEEeCCHH-HHHHHHHHHhcCccCCCCcc
Confidence 4557788887653 444444333 22334588
No 206
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.61 E-value=1 Score=40.67 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=42.6
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.+...+..|. ...||+|......+++++...+ ++..-.|.. ....++...|++..
T Consensus 115 ~~~~~i~~fv-~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~---------------------~~~~~~~~~~~v~~- 169 (517)
T PRK15317 115 DGDFHFETYV-SLSCHNCPDVVQALNLMAVLNP--NITHTMIDG---------------------ALFQDEVEARNIMA- 169 (517)
T ss_pred CCCeEEEEEE-cCCCCCcHHHHHHHHHHHHhCC--CceEEEEEc---------------------hhCHhHHHhcCCcc-
Confidence 3455688888 9999999999898888877655 355444421 23456777888876
Q ss_pred CCCCCCccEEEEEc
Q 028030 173 FFGSLPGRQTYILD 186 (215)
Q Consensus 173 ~~g~~p~~~~~lid 186 (215)
+| ++| +|
T Consensus 170 ----VP--~~~-i~ 176 (517)
T PRK15317 170 ----VP--TVF-LN 176 (517)
T ss_pred ----cC--EEE-EC
Confidence 88 554 44
No 207
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.48 E-value=0.66 Score=29.79 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=23.4
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~ 138 (215)
|+.|. .++|+.|++....|.+ .|+.+..+.++.
T Consensus 3 v~ly~-~~~C~~C~ka~~~L~~-------~gi~~~~~di~~ 35 (73)
T cd03027 3 VTIYS-RLGCEDCTAVRLFLRE-------KGLPYVEINIDI 35 (73)
T ss_pred EEEEe-cCCChhHHHHHHHHHH-------CCCceEEEECCC
Confidence 34455 8999999988666664 467777777654
No 208
>PHA03050 glutaredoxin; Provisional
Probab=92.42 E-value=0.38 Score=33.92 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=17.0
Q ss_pred EEEEEcCCCChhhHHHHHHHHHH
Q 028030 98 VVYFYPADETPGCTKQACAFRDS 120 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l 120 (215)
|+.|. .+|||+|.+....|.++
T Consensus 15 V~vys-~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFV-KFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEE-CCCChHHHHHHHHHHHc
Confidence 55666 89999999877666655
No 209
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.41 E-value=0.49 Score=31.99 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=26.8
Q ss_pred CCCcEEEEEEcC----CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030 93 KGKPVVVYFYPA----DETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA 146 (215)
Q Consensus 93 ~gk~~ll~f~~a----~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~ 146 (215)
++++++|+-- + +||++|......|.+. |+.+..+.++...++++.+
T Consensus 6 ~~~~vvvf~k-~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~~~~~~~~~l 55 (90)
T cd03028 6 KENPVVLFMK-GTPEEPRCGFSRKVVQILNQL-------GVDFGTFDILEDEEVRQGL 55 (90)
T ss_pred ccCCEEEEEc-CCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcCCCHHHHHHH
Confidence 4456666543 3 5999999876655554 5666666654334433333
No 210
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=92.17 E-value=0.33 Score=34.49 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=43.8
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
+|...+|+.|++....|.+ +|+.+..+.. + +.+++++|++..+.++.-+....+..++..+..
T Consensus 4 iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~ 70 (115)
T cd03032 4 LYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNID 70 (115)
T ss_pred EEeCCCCHHHHHHHHHHHH-------CCCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCC
Confidence 4448999999987655554 4666666655 2 458999999998776655555666667766654
No 211
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=92.08 E-value=0.25 Score=32.74 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=26.8
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHH
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~ 140 (215)
|+.|. ...|..|......|.++..+ .++.+..|.+++.+
T Consensus 2 l~l~~-k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~~d~ 40 (81)
T PF05768_consen 2 LTLYT-KPGCHLCDEAKEILEEVAAE---FPFELEEVDIDEDP 40 (81)
T ss_dssp EEEEE--SSSHHHHHHHHHHHHCCTT---STCEEEEEETTTTH
T ss_pred EEEEc-CCCCChHHHHHHHHHHHHhh---cCceEEEEECCCCH
Confidence 45566 88999999888777775433 34788888876443
No 212
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=92.03 E-value=0.28 Score=34.65 Aligned_cols=62 Identities=19% Similarity=0.312 Sum_probs=41.1
Q ss_pred EcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 102 YPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 102 ~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
|...+|+.|++...-|.+ +|+.+..+.. + +.+++.+|++..+.++.-+....+..++..++.
T Consensus 4 Y~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 69 (111)
T cd03036 4 YEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLK 69 (111)
T ss_pred EECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcc
Confidence 338999999988655554 4666666554 2 457899999988876544444455555555553
No 213
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=91.87 E-value=0.53 Score=33.52 Aligned_cols=62 Identities=10% Similarity=0.008 Sum_probs=43.9
Q ss_pred EEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC----CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030 100 YFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD----DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 169 (215)
Q Consensus 100 ~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~ 169 (215)
.|+ ..+|+.|++....|.+ +|+.+..+... +.+++.++++..+..+.-+....+..++.++.
T Consensus 3 iY~-~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~~ 68 (117)
T TIGR01617 3 VYG-SPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALNT 68 (117)
T ss_pred EEe-CCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCCc
Confidence 344 8999999988766655 46777666653 35789999999997766555566666666664
No 214
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=91.78 E-value=2.1 Score=31.10 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=51.6
Q ss_pred CcEEEEEEcCC--CChhh-HHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030 95 KPVVVYFYPAD--ETPGC-TKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA 171 (215)
Q Consensus 95 k~~ll~f~~a~--~C~~C-~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 171 (215)
++-+|.|.++. +-+-+ ......|.+++++|+++.+.++.+..+.. ..+.+.||+..
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~---------------------~~~~~~fgl~~ 79 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ---------------------LDLEEALNIGG 79 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc---------------------HHHHHHcCCCc
Confidence 56788888543 22224 35677888888999887678888765432 33667778753
Q ss_pred cCCCCCCccEEEEEcCCCcEEEE-EeCCC
Q 028030 172 DFFGSLPGRQTYILDKNGVVQLI-YNNQF 199 (215)
Q Consensus 172 ~~~g~~p~~~~~lid~~G~v~~~-~~g~~ 199 (215)
. ..| .+++++.++. ++. +.+.+
T Consensus 80 ~---~~P--~v~i~~~~~~-KY~~~~~~~ 102 (130)
T cd02983 80 F---GYP--AMVAINFRKM-KFATLKGSF 102 (130)
T ss_pred c---CCC--EEEEEecccC-ccccccCcc
Confidence 2 278 8999998876 555 55554
No 215
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=91.74 E-value=0.32 Score=35.53 Aligned_cols=63 Identities=10% Similarity=0.075 Sum_probs=42.3
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
+|...+|+.|++...-|.+ +|+.+..+.. + +.+++.+|++..+..+.-+....+..++..+..
T Consensus 4 iY~~~~C~~C~ka~~~L~~-------~gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k~l~~~ 70 (131)
T PRK01655 4 LFTSPSCTSCRKAKAWLEE-------HDIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQKLNVD 70 (131)
T ss_pred EEeCCCChHHHHHHHHHHH-------cCCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHHhCCCC
Confidence 4448999999987544443 4666666654 2 347899999998766555555566666666554
No 216
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=91.31 E-value=1.6 Score=40.43 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=73.1
Q ss_pred cccCCCCCCCCCeEEeC-CCCCeeecCC-c--CCCcEEEEEEcCCCChhhHHHHHHHHHHH--------HHHHHcC----
Q 028030 65 SAKVSKGQAPPSFTLKD-QEGRNVSLSK-F--KGKPVVVYFYPADETPGCTKQACAFRDSY--------EKFKKAG---- 128 (215)
Q Consensus 65 ~~~~~~g~~~P~f~l~~-~~g~~~~l~~-~--~gk~~ll~f~~a~~C~~C~~~~~~l~~l~--------~~~~~~~---- 128 (215)
...+.+|..+|++.+.. .+++++.|.+ + .|++.|+.|-...-.+.....+..+.+.. .+|...+
T Consensus 460 ~~~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 539 (634)
T PRK08294 460 ATGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADID 539 (634)
T ss_pred ccCCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCC
Confidence 35688999999999887 5788877764 3 58999999972222334444444333322 1111111
Q ss_pred --cEEEEEeCCC---------HHHHHHHHHHcCC-CeE-EEEcC--ChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEE
Q 028030 129 --AEVIGISGDD---------SSSHKAFAKKYRL-PYT-LLSDE--GNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQL 193 (215)
Q Consensus 129 --v~vv~vs~d~---------~~~~~~~~~~~~~-~~~-~~~d~--~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~ 193 (215)
++++.|.... ++..+.+-..+++ .|. ++.|. ..+.++.||+..+ .- .++++-|||-|-+
T Consensus 540 ~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~----~g--~~vvvRPD~~v~~ 613 (634)
T PRK08294 540 AVIDVRAIFQQPHRELDLEDVPALLLPRKGRFGLTDYEKVFCADLSGADIFDLRGIDRD----RG--AVVVVRPDQYVAN 613 (634)
T ss_pred cEEEEEEEecCCCCccchhhCcHhhCCcccccCccchhheecCCCchhhHHHhhCCCCC----ce--eEEEECCCCceEE
Confidence 5666665421 2223333334455 443 34442 3468899998752 22 8999999998865
Q ss_pred E
Q 028030 194 I 194 (215)
Q Consensus 194 ~ 194 (215)
.
T Consensus 614 ~ 614 (634)
T PRK08294 614 V 614 (634)
T ss_pred E
Confidence 4
No 217
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=91.15 E-value=0.41 Score=33.31 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=40.3
Q ss_pred EEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC----CCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 100 YFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG----DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 100 ~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~----d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
.|. ..+|+.|++....|++ +|+.+..+.. .+.++++++....+..+.-+....+..++..+..
T Consensus 3 iY~-~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~ 69 (105)
T cd02977 3 IYG-NPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLA 69 (105)
T ss_pred EEE-CCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCc
Confidence 344 8999999988655554 4655555554 3468899999988865544444444555554443
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.11 E-value=1 Score=39.70 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=56.6
Q ss_pred ccccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030 64 ISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD 137 (215)
Q Consensus 64 ~~~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d 137 (215)
+...+.-++.+-.+.+.-.+|+.+++.+++|..-+|..- ++- ..+...+...+...+++.++||-||.|..+
T Consensus 266 q~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvA-G~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 266 QMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILA-GTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred HHHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEE-CCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 445566677777777777678899999999976555544 443 678888999999999999999999998764
No 219
>PRK10638 glutaredoxin 3; Provisional
Probab=91.10 E-value=1.2 Score=29.34 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=22.5
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS 139 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~ 139 (215)
+..|. ..||++|.+....|++ +|+.+.-+.++..
T Consensus 4 v~ly~-~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~ 37 (83)
T PRK10638 4 VEIYT-KATCPFCHRAKALLNS-------KGVSFQEIPIDGD 37 (83)
T ss_pred EEEEE-CCCChhHHHHHHHHHH-------cCCCcEEEECCCC
Confidence 33444 8999999987666654 3666666666543
No 220
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=0.48 Score=37.67 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=45.3
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEE
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLL 156 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~ 156 (215)
+++..++.|| +.||.+|......+..+.+.. .+++++-+..+.-.++....+--..++.+.
T Consensus 16 ~~~~~~~~f~-a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~~eis~~~~v~~vp~~~~ 76 (227)
T KOG0911|consen 16 KGKLLVLHFW-AIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEFPEISNLIAVEAVPYFVF 76 (227)
T ss_pred ccchhhhhhh-hhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhhhHHHHHHHHhcCceeee
Confidence 6789999999 999999998888888887766 357888887766555555555555554433
No 221
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=90.69 E-value=2.4 Score=32.01 Aligned_cols=62 Identities=13% Similarity=0.259 Sum_probs=44.8
Q ss_pred EeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC---HHHHHHHHHHc
Q 028030 79 LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD---SSSHKAFAKKY 149 (215)
Q Consensus 79 l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~---~~~~~~~~~~~ 149 (215)
+.|.||. ++.+|..|...-+ .. .+ ...+...+++.++.++|..++.++.-. ....+.|++..
T Consensus 3 vsDIDGT-iT~SD~~G~i~~~-~G-~d------~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 3 VSDIDGT-ITKSDVLGHILPI-LG-KD------WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred EEeccCC-cCccchhhhhhhc-cC-ch------hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence 5678886 7888877765332 22 33 345677788899999999999998743 46778888876
No 222
>PRK10824 glutaredoxin-4; Provisional
Probab=90.43 E-value=0.77 Score=32.79 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=27.9
Q ss_pred CCcEEEEEEcC----CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030 94 GKPVVVYFYPA----DETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK 148 (215)
Q Consensus 94 gk~~ll~f~~a----~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~ 148 (215)
.+.++|+-- + ++||+|.+....|.++ |+.+-.+.+++..++++++.+
T Consensus 14 ~~~Vvvf~K-g~~~~p~Cpyc~~ak~lL~~~-------~i~~~~idi~~d~~~~~~l~~ 64 (115)
T PRK10824 14 ENPILLYMK-GSPKLPSCGFSAQAVQALSAC-------GERFAYVDILQNPDIRAELPK 64 (115)
T ss_pred cCCEEEEEC-CCCCCCCCchHHHHHHHHHHc-------CCCceEEEecCCHHHHHHHHH
Confidence 455666554 4 4999999887766654 455444555443445555544
No 223
>PRK12559 transcriptional regulator Spx; Provisional
Probab=90.01 E-value=0.71 Score=33.75 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=42.0
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC----CCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG----DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~----d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
+|...+|+.|++...-|. ++|+.+..+.. -+.+++++|++..+..+.-+....++.++..+..
T Consensus 4 iY~~~~C~~crkA~~~L~-------~~gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~ 70 (131)
T PRK12559 4 LYTTASCASCRKAKAWLE-------ENQIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNIN 70 (131)
T ss_pred EEeCCCChHHHHHHHHHH-------HcCCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCC
Confidence 444899999998754444 34666666554 2568999999987666544445566666666654
No 224
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.51 E-value=1.8 Score=38.99 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=41.9
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.++..+..|. ...||+|......+++++.+.+ ++..-.|.. ....++...|++..
T Consensus 116 ~~~~~i~~f~-~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~---------------------~~~~~~~~~~~v~~- 170 (515)
T TIGR03140 116 NGPLHFETYV-SLTCQNCPDVVQALNQMALLNP--NISHTMIDG---------------------ALFQDEVEALGIQG- 170 (515)
T ss_pred CCCeEEEEEE-eCCCCCCHHHHHHHHHHHHhCC--CceEEEEEc---------------------hhCHHHHHhcCCcc-
Confidence 4556788888 9999999988888888877655 344333321 12346667788876
Q ss_pred CCCCCCccEEEEEc
Q 028030 173 FFGSLPGRQTYILD 186 (215)
Q Consensus 173 ~~g~~p~~~~~lid 186 (215)
+| ++| +|
T Consensus 171 ----VP--~~~-i~ 177 (515)
T TIGR03140 171 ----VP--AVF-LN 177 (515)
T ss_pred ----cC--EEE-EC
Confidence 88 554 44
No 225
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=89.21 E-value=1.7 Score=35.97 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=40.4
Q ss_pred CCCCCeEEeCCCCCeeecCCcC--CCcEEEEEEcCCCChhhHHHHH-HHHHHHHHHH--HcCcEEEEEeCCCHHHHHHHH
Q 028030 72 QAPPSFTLKDQEGRNVSLSKFK--GKPVVVYFYPADETPGCTKQAC-AFRDSYEKFK--KAGAEVIGISGDDSSSHKAFA 146 (215)
Q Consensus 72 ~~~P~f~l~~~~g~~~~l~~~~--gk~~ll~f~~a~~C~~C~~~~~-~l~~l~~~~~--~~~v~vv~vs~d~~~~~~~~~ 146 (215)
+.+|-|++.|.+|.++-.+.-. ++.+.++|+ |+.+.. .+.++..+.+ ..+++|+.|+.+...++.+-.
T Consensus 73 ~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~vY~l~~~~ 145 (274)
T PF04278_consen 73 AGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPELASGAKVVPVSLGKVYQLAQEN 145 (274)
T ss_dssp TTSEEEEEE-TT--B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccccCceEEEEecHHHHHHHHHHh
Confidence 7899999999999998776654 566666665 332222 2333433322 357999999997765543222
Q ss_pred --HHcCCCeEEEEcC
Q 028030 147 --KKYRLPYTLLSDE 159 (215)
Q Consensus 147 --~~~~~~~~~~~d~ 159 (215)
+..++.|.++.|.
T Consensus 146 ~~k~~~~~F~~vP~~ 160 (274)
T PF04278_consen 146 KKKPEGLQFRFVPDP 160 (274)
T ss_dssp TT-TT-EEEEEE--H
T ss_pred hcCCcCceEEEcCCH
Confidence 3444557777764
No 226
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.17 E-value=0.91 Score=36.48 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=39.0
Q ss_pred eCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEE
Q 028030 80 KDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG 133 (215)
Q Consensus 80 ~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~ 133 (215)
...++..+...+..++++++.|. -.-|++|...++.+.+.+...++..+.+.-
T Consensus 70 ~~~~~~~~~~G~~~~~v~v~~f~-d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~ 122 (244)
T COG1651 70 LTPDGKDVVLGNPYAPVTVVEFF-DYTCPYCKEAFPELKKKYIDDGKVRLVLRE 122 (244)
T ss_pred ecCCCCcccccCCCCCceEEEEe-cCcCccHHHHHHHHHHHhhhcCCCceEEEE
Confidence 34566666666666689999999 888999999999999977766654334333
No 227
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=89.03 E-value=5.6 Score=29.33 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=39.9
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCC
Q 028030 99 VYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLP 178 (215)
Q Consensus 99 l~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p 178 (215)
+.+|....|+=|..-+.. ++.+|++|=.+..|+-..+ .+++|+..+ +.
T Consensus 28 ~~vyksPnCGCC~~w~~~-------mk~~Gf~Vk~~~~~d~~al---------------------K~~~gIp~e----~~ 75 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQH-------MKANGFEVKVVETDDFLAL---------------------KRRLGIPYE----MQ 75 (149)
T ss_pred EEEEeCCCCccHHHHHHH-------HHhCCcEEEEeecCcHHHH---------------------HHhcCCChh----hc
Confidence 444448999988865444 4456899888877666543 334555442 22
Q ss_pred ccEEEEEcCCCcEEEEEeC
Q 028030 179 GRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 179 ~~~~~lid~~G~v~~~~~g 197 (215)
+=++.+| +|+++.-+++
T Consensus 76 SCHT~VI--~Gy~vEGHVP 92 (149)
T COG3019 76 SCHTAVI--NGYYVEGHVP 92 (149)
T ss_pred cccEEEE--cCEEEeccCC
Confidence 3367777 5777655544
No 228
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=88.98 E-value=1.2 Score=32.60 Aligned_cols=63 Identities=11% Similarity=0.069 Sum_probs=42.9
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
+|...+|+.|++...-| +++|+.+..+.. + +.+++++|++..+..+.-+....++.++..+..
T Consensus 4 iY~~~~C~~crkA~~~L-------~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~~lin~~~~~~k~L~~~ 70 (132)
T PRK13344 4 IYTISSCTSCKKAKTWL-------NAHQLSYKEQNLGKEPLTKEEILAILTKTENGIESIVSSKNRYAKALDCD 70 (132)
T ss_pred EEeCCCCHHHHHHHHHH-------HHcCCCeEEEECCCCCCCHHHHHHHHHHhCCCHHHhhccCcHHHHhCCcc
Confidence 44489999999864333 444677666654 2 468999999998877655555666666666544
No 229
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.56 E-value=0.92 Score=41.80 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.1
Q ss_pred CCCcEEEEEEcCCCChhhHHHH
Q 028030 93 KGKPVVVYFYPADETPGCTKQA 114 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~ 114 (215)
.+|+++|... .+||..|.-..
T Consensus 42 edkPIflSIG-ys~CHWChVM~ 62 (667)
T COG1331 42 EDKPILLSIG-YSTCHWCHVMA 62 (667)
T ss_pred hCCCEEEEec-cccccchHHHh
Confidence 5799999999 89999998543
No 230
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=88.46 E-value=2.6 Score=32.15 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEE
Q 028030 112 KQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLS 157 (215)
Q Consensus 112 ~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~ 157 (215)
...|.+.++.++.++.|+.++-+|-+.+..++.|.+.++++|..-.
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A 91 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRA 91 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecc
Confidence 4567899999999999999999999999999999999999976543
No 231
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=87.78 E-value=8.3 Score=28.98 Aligned_cols=88 Identities=24% Similarity=0.345 Sum_probs=50.9
Q ss_pred CCc-EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 94 GKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 94 gk~-~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
+++ +++.|. .............+.+++.+++++ +.++.+..+ ....+...+|+...
T Consensus 94 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~---------------------~~~~~~~~~~i~~~ 150 (184)
T PF13848_consen 94 PKPPVLILFD-NKDNESTEAFKKELQDIAKKFKGK-INFVYVDAD---------------------DFPRLLKYFGIDED 150 (184)
T ss_dssp SSEEEEEEEE-TTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETT---------------------TTHHHHHHTTTTTS
T ss_pred CCceEEEEEE-cCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehH---------------------HhHHHHHHcCCCCc
Confidence 344 555555 444555666667777777777654 666666543 22456667777631
Q ss_pred CCCCCCccEEEEEcCCCcEE-EEEeCCCCCCccHHHHHHHHh
Q 028030 173 FFGSLPGRQTYILDKNGVVQ-LIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~-~~~~g~~~~~~~~~~il~~l~ 213 (215)
.+| .+++++.+..-. +...+ .-..+.+.+.|+
T Consensus 151 ---~~P--~~vi~~~~~~~~~~~~~~----~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 151 ---DLP--ALVIFDSNKGKYYYLPEG----EITPESIEKFLN 183 (184)
T ss_dssp ---SSS--EEEEEETTTSEEEE--SS----CGCHHHHHHHHH
T ss_pred ---cCC--EEEEEECCCCcEEcCCCC----CCCHHHHHHHhc
Confidence 278 999999555433 32322 344566666664
No 232
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=87.53 E-value=1 Score=31.56 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=37.0
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030 101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 169 (215)
Q Consensus 101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~ 169 (215)
+|...+|+.|++...-|.+ +|+.+-.+.. + +.+++++|++..|+ .-+....+..++.++.
T Consensus 3 iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~~p~s~~eL~~~l~~~g~--~~li~~~~~~yk~l~l 66 (105)
T cd03035 3 LYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRKDGLDAATLERWLAKVGW--ETLLNKRGTTWRKLDD 66 (105)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCCCHHHHHHHHHHhCh--HHHHccCchHHHhCCh
Confidence 3438999999987655544 3666655554 2 56899999998873 2222234444544444
No 233
>PRK06184 hypothetical protein; Provisional
Probab=87.28 E-value=6.9 Score=35.04 Aligned_cols=94 Identities=16% Similarity=0.268 Sum_probs=63.5
Q ss_pred cCCCCCCCCCeEEeCCCCCeeecCCc-C-CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030 67 KVSKGQAPPSFTLKDQEGRNVSLSKF-K-GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA 144 (215)
Q Consensus 67 ~~~~g~~~P~f~l~~~~g~~~~l~~~-~-gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~ 144 (215)
.+.+|..+|+..+...+|+.+++.|+ . ++++||.|-...+ .. . ...++.++.+....
T Consensus 385 ~~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~~~~~~--~~------~-------~~~~~~~~~~~~~~------ 443 (502)
T PRK06184 385 GLRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAFGAGAA--AI------L-------ARRGLRIHRVGDAA------ 443 (502)
T ss_pred CCCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEecCCch--hh------h-------hhcCceEEEecccC------
Confidence 46789999999988777877777665 4 5899998752222 11 0 12356666553211
Q ss_pred HHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEe
Q 028030 145 FAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYN 196 (215)
Q Consensus 145 ~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~ 196 (215)
....+.|.++.+...|++.. . ..+||-|||-|-+...
T Consensus 444 -------~~~~~~d~~g~~~~~~~~~~------~--~~~lvRPDg~v~~~~~ 480 (502)
T PRK06184 444 -------EGGDLVDDAGHFRDAYGLTG------G--TLVLVRPDGYVGLIAA 480 (502)
T ss_pred -------CCCceeCCCccHHHHhcCCC------C--cEEEECCCcceEEEec
Confidence 12235788889999998874 2 6899999999987753
No 234
>PRK10026 arsenate reductase; Provisional
Probab=87.12 E-value=2.3 Score=31.48 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=52.6
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCC-
Q 028030 101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFG- 175 (215)
Q Consensus 101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g- 175 (215)
+|....|..|++.+.-|.+. |+.+..+.. + +.+++++|++..+..+.-+....+..++.++.......
T Consensus 6 iY~~p~Cst~RKA~~wL~~~-------gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~lint~~~~yr~L~~~~~~ls~ 78 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRNS-------GTEPTIIHYLETPPTRDELVKLIADMGISVRALLRKNVEPYEELGLAEDKFTD 78 (141)
T ss_pred EEeCCCCHHHHHHHHHHHHC-------CCCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHHHHcCCchHHHcCCCccCCCH
Confidence 44378899999886655543 555555543 3 56899999999887544444445556666555421100
Q ss_pred --------CCC--ccEEEEEcCCCcEEEE
Q 028030 176 --------SLP--GRQTYILDKNGVVQLI 194 (215)
Q Consensus 176 --------~~p--~~~~~lid~~G~v~~~ 194 (215)
.-| ..+=+|++.+|.++.+
T Consensus 79 ~e~l~ll~~~P~LIKRPIi~~~~~a~i~R 107 (141)
T PRK10026 79 DQLIDFMLQHPILINRPIVVTPLGTRLCR 107 (141)
T ss_pred HHHHHHHHhCccceeCcEEEcCCCeEEEC
Confidence 011 1244778888877654
No 235
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=86.87 E-value=2.9 Score=38.06 Aligned_cols=75 Identities=9% Similarity=0.165 Sum_probs=45.2
Q ss_pred CCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030 90 SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 169 (215)
Q Consensus 90 ~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~ 169 (215)
.++++.+.|+.|+ ...|..|......|+++. ++.++ +.+..... +.+.++++.|++
T Consensus 362 ~~l~~~v~l~~~~-~~~~~~~~e~~~~l~e~~-~~s~~-i~~~~~~~---------------------~~~~~~~~~~~v 417 (555)
T TIGR03143 362 GRLENPVTLLLFL-DGSNEKSAELQSFLGEFA-SLSEK-LNSEAVNR---------------------GEEPESETLPKI 417 (555)
T ss_pred HhcCCCEEEEEEE-CCCchhhHHHHHHHHHHH-hcCCc-EEEEEecc---------------------ccchhhHhhcCC
Confidence 3456667777888 666777876666666654 33332 33332221 234567778888
Q ss_pred CccCCCCCCccEEEEEcCCCc---EEEEE
Q 028030 170 PADFFGSLPGRQTYILDKNGV---VQLIY 195 (215)
Q Consensus 170 ~~~~~g~~p~~~~~lid~~G~---v~~~~ 195 (215)
.. .| .+.++|.+|. |++..
T Consensus 418 ~~-----~P--~~~i~~~~~~~~~i~f~g 439 (555)
T TIGR03143 418 TK-----LP--TVALLDDDGNYTGLKFHG 439 (555)
T ss_pred Cc-----CC--EEEEEeCCCcccceEEEe
Confidence 76 78 7888876653 55443
No 236
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=86.82 E-value=8.2 Score=34.93 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=71.8
Q ss_pred CCCCCCCCCeEEeCCCCCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030 68 VSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA 146 (215)
Q Consensus 68 ~~~g~~~P~f~l~~~~g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~ 146 (215)
..+|..+|+..+.+.+|....+.++.| .++||.|- .. +..... +.. .+.+...+..++.+........
T Consensus 411 ~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~~-~~--~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~---- 479 (538)
T PRK06183 411 SPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGWG-CD--PLAGLS-DEQ---RARWRALGARFVQVVPAVQAHT---- 479 (538)
T ss_pred CCcccCcCCCeeEcCCCCcccchhccCCceEEEEec-CC--chhcCC-HHH---HHHHHHcCCeEEEEeccccccc----
Confidence 458999999998877665555666755 68888774 22 111100 111 1224445677777654321110
Q ss_pred HHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030 147 KKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 147 ~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l 212 (215)
-....+.|.++.+...|+... . ..+||-||+-|-..... ...+.++..|
T Consensus 480 ----~~~~~~~d~~g~~~~~~~~~~------~--~~~lvRPD~~v~~~~~~-----~~~~~~~~~l 528 (538)
T PRK06183 480 ----AQDDHDSDVDGALRAWLARHG------A--SAVLLRPDRYVAAAADA-----QTLGALLAAL 528 (538)
T ss_pred ----CCCceeecCCchHHHHHHhCC------C--EEEEECCCEEEEEeeCH-----HHHHHHHHHH
Confidence 234567899999999999874 3 68999999999865432 2345555444
No 237
>PTZ00062 glutaredoxin; Provisional
Probab=86.79 E-value=2.8 Score=33.11 Aligned_cols=49 Identities=4% Similarity=-0.031 Sum_probs=28.8
Q ss_pred CCCcEEEEEEc---CCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030 93 KGKPVVVYFYP---ADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK 148 (215)
Q Consensus 93 ~gk~~ll~f~~---a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~ 148 (215)
..++++|+--. .++|++|++....|++ .|+.+..+.+++.+++++.+.+
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~~d~~~~~~l~~ 162 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIFEDPDLREELKV 162 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcCCCHHHHHHHHH
Confidence 34566666551 2588888877555553 3677666666544555444443
No 238
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=84.08 E-value=1.5 Score=35.20 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=25.8
Q ss_pred ccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 179 GRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 179 ~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
+..++|+|++|+|++..-|+..++ .+++++++.+
T Consensus 248 ~GyV~L~D~s~kIRW~g~G~aTp~-Eve~L~~~~k 281 (287)
T KOG4614|consen 248 TGYVLLLDKSGKIRWQGFGTATPE-EVEQLLSCTK 281 (287)
T ss_pred eEEEEEEccCceEEEeecCCCCHH-HHHHHHHHHH
Confidence 458899999999999998876554 3666666543
No 239
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=84.03 E-value=9.5 Score=34.57 Aligned_cols=116 Identities=12% Similarity=0.179 Sum_probs=70.6
Q ss_pred cCCCCCCCCCeEEeCCCCCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030 67 KVSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF 145 (215)
Q Consensus 67 ~~~~g~~~P~f~l~~~~g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~ 145 (215)
...+|..+|+..+. .+|+.+++.|+.| +++||.|- .. ... ....+.. .....++.++.+..+....
T Consensus 426 ~~~pG~r~p~~~~~-~~~~~~~l~dl~g~~f~ll~~~-~~-~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~---- 492 (547)
T PRK08132 426 GPVPGAPAPDAPVR-ADGEPGWLLDLLGGGFTLLLFG-DD-AAA-----AALLQAL-AAAALPVRVVAVVPAGAAQ---- 492 (547)
T ss_pred CCCCCCCCCCCccc-CCCCceEHHHhcCCCEEEEEec-CC-chh-----hhhhhhh-hccCCceEEEEEecCcccc----
Confidence 46689999999887 4576778888744 67888775 21 111 1111111 1122245565554432110
Q ss_pred HHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 146 AKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 146 ~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
.+...+.|.++.+.+.|++.. . ..+||-|||-|-+.+.. ..++.+++.|+
T Consensus 493 -----~~~~~~~d~~~~~~~~~~~~~------~--~~~LvRPDg~va~~~~~-----~~~~~~~~~l~ 542 (547)
T PRK08132 493 -----AAAGVLEDADGLAAERYDARP------G--TVYLIRPDQHVAARWRT-----PDAAAVRAALA 542 (547)
T ss_pred -----cCcccccCcccHHHHHhCCCC------C--eEEEECCCceEEEEecC-----CCHHHHHHHHH
Confidence 122345788999999999874 3 68999999999988654 23455555443
No 240
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=81.64 E-value=14 Score=25.87 Aligned_cols=68 Identities=13% Similarity=0.228 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCC
Q 028030 112 KQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNG 189 (215)
Q Consensus 112 ~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G 189 (215)
....=|++.++++++.+..=+.|++++.+.++...+- -...++.-....++++.+|+.. +| ++|..+|
T Consensus 35 ~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~l-apgl~l~P~sgddLa~rL~l~h-----YP----vLit~tg 102 (105)
T TIGR03765 35 ASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRAL-APGLPLLPVSGDDLAERLGLRH-----YP----VLITATG 102 (105)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH-cCCCcccCCCHHHHHHHhCCCc-----cc----EEEecCc
Confidence 3455667777888877777777899998876655443 3445566667789999999987 77 5666666
No 241
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.15 E-value=11 Score=24.65 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=26.4
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC-CCHHHHHHHHHH
Q 028030 99 VYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG-DDSSSHKAFAKK 148 (215)
Q Consensus 99 l~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~-d~~~~~~~~~~~ 148 (215)
+-|+ +.-||.|......|+++ ++..=.|.+ .+-...++|+.-
T Consensus 5 ~lfg-sn~Cpdca~a~eyl~rl-------~v~yd~VeIt~Sm~NlKrFl~l 47 (85)
T COG4545 5 KLFG-SNLCPDCAPAVEYLERL-------NVDYDFVEITESMANLKRFLHL 47 (85)
T ss_pred eeec-cccCcchHHHHHHHHHc-------CCCceeeehhhhhhhHHHHHhh
Confidence 4466 89999999887777665 344334432 344566666653
No 242
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=80.41 E-value=6.9 Score=29.76 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=29.1
Q ss_pred EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030 97 VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD 137 (215)
Q Consensus 97 ~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d 137 (215)
+|.+|+ ..-||.|-...+.|.++.+++++-.+++..+...
T Consensus 1 ~i~~~~-D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFF-DFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEE-BTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEE-eCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 355566 8889999999999999999994333444455543
No 243
>PHA03075 glutaredoxin-like protein; Provisional
Probab=79.88 E-value=19 Score=25.67 Aligned_cols=38 Identities=11% Similarity=0.251 Sum_probs=29.8
Q ss_pred CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEE
Q 028030 95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG 133 (215)
Q Consensus 95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~ 133 (215)
|.+||-|. -+-|+.|...-..|.++.++|.=..+.++.
T Consensus 2 K~tLILfG-KP~C~vCe~~s~~l~~ledeY~ilrVNIlS 39 (123)
T PHA03075 2 KKTLILFG-KPLCSVCESISEALKELEDEYDILRVNILS 39 (123)
T ss_pred CceEEEeC-CcccHHHHHHHHHHHHhhccccEEEEEeee
Confidence 67899999 999999999988888887777643444444
No 244
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=79.47 E-value=18 Score=26.81 Aligned_cols=68 Identities=15% Similarity=0.256 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCC
Q 028030 112 KQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNG 189 (215)
Q Consensus 112 ~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G 189 (215)
....=|++..+++++.+-.=+.|++++.+.++...+- -...++.-....++++.+++.. +| ++|..+|
T Consensus 73 ~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~l-apgl~l~P~sgddLA~rL~l~H-----YP----vLIt~~g 140 (142)
T PF11072_consen 73 LSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQL-APGLPLLPVSGDDLARRLGLSH-----YP----VLITATG 140 (142)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH-cCCCeecCCCHHHHHHHhCCCc-----cc----EEeecCC
Confidence 3455667777888887777788899999887665543 2345555566779999999987 77 5565555
No 245
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=77.13 E-value=5.4 Score=34.98 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=26.3
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF 145 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~ 145 (215)
|+.|. .+|||+|.+.-..|.+ +|+.+..|.+|+.....++
T Consensus 4 V~vys-~~~Cp~C~~aK~~L~~-------~gi~~~~idi~~~~~~~~~ 43 (410)
T PRK12759 4 VRIYT-KTNCPFCDLAKSWFGA-------NDIPFTQISLDDDVKRAEF 43 (410)
T ss_pred EEEEe-CCCCHHHHHHHHHHHH-------CCCCeEEEECCCChhHHHH
Confidence 55666 9999999977555544 4777777777644433333
No 246
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=76.19 E-value=4.5 Score=28.94 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=45.9
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC----CCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 99 VYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG----DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 99 l~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~----d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
|.+|...-|..|++...-|+ +.|+++-.+.. -+.+++.+|++..+..|.-+....+..++.+|..
T Consensus 3 itiy~~p~C~t~rka~~~L~-------~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~~~ 71 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLE-------EHGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELNLD 71 (117)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcCCc
Confidence 34443888999998755444 34666544432 3568999999999988777777777888888844
No 247
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=75.45 E-value=12 Score=27.44 Aligned_cols=42 Identities=29% Similarity=0.297 Sum_probs=33.0
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEE-EeCC
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG-ISGD 137 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~-vs~d 137 (215)
..|+++|-|. ..|-+.|...=..|.+.+++.++ +.+|. |..+
T Consensus 19 ~drvvViRFG-~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFG-RDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETT
T ss_pred CceEEEEEeC-CCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcc
Confidence 3589999999 99999999999999999988874 55554 5554
No 248
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.44 E-value=33 Score=28.94 Aligned_cols=115 Identities=10% Similarity=0.146 Sum_probs=66.2
Q ss_pred CCCCeEEeCCCCCeeecCCcCCCcEEEEEE----cCCCChhhHHHHHHHHHHHHHHHHcCc-----EEEEEeCCCHHHHH
Q 028030 73 APPSFTLKDQEGRNVSLSKFKGKPVVVYFY----PADETPGCTKQACAFRDSYEKFKKAGA-----EVIGISGDDSSSHK 143 (215)
Q Consensus 73 ~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~----~a~~C~~C~~~~~~l~~l~~~~~~~~v-----~vv~vs~d~~~~~~ 143 (215)
+-.-+++.|.+-+.+-....+. +.+|+++ ++..|..|.....++.-+++.+...+- ++...
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prN-ys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~--------- 108 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRN-YSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFC--------- 108 (331)
T ss_pred CCCeEEecCcchhhhccCCCCC-eEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEE---------
Confidence 3334555555444333333343 4455555 345699999999999999888875421 11111
Q ss_pred HHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEc-CCCcEEEEEeC-CCCCCccHHHHHHHHhc
Q 028030 144 AFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILD-KNGVVQLIYNN-QFQPEKHIDETLKFLQS 214 (215)
Q Consensus 144 ~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid-~~G~v~~~~~g-~~~~~~~~~~il~~l~~ 214 (215)
.+=.|+..++.+.+++.. .| +.+++. +.|+......- ..+.....|++++.++.
T Consensus 109 ----------~Vd~~e~p~~Fq~l~ln~-----~P--~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~ 164 (331)
T KOG2603|consen 109 ----------MVDYDESPQVFQQLNLNN-----VP--HLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVAD 164 (331)
T ss_pred ----------EEeccccHHHHHHhcccC-----CC--eEEEeCCCccccccCccchhhhcchhHHHHHHHHHH
Confidence 112456678889999987 88 888883 34455422111 11223346777776653
No 249
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=74.05 E-value=28 Score=24.46 Aligned_cols=90 Identities=21% Similarity=0.333 Sum_probs=47.2
Q ss_pred CcEEEEEEcCCC---ChhhHHHHHHHHHHHHHHH-HcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 95 KPVVVYFYPADE---TPGCTKQACAFRDSYEKFK-KAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 95 k~~ll~f~~a~~---C~~C~~~~~~l~~l~~~~~-~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
++.+|.|+...+ -..-......+.+++++++ ++ +.++.+..++. +.+.+.||+.
T Consensus 15 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gk-i~Fv~~D~~~~---------------------~~~l~~fgl~ 72 (111)
T cd03073 15 KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRK-LNFAVADKEDF---------------------SHELEEFGLD 72 (111)
T ss_pred CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCe-EEEEEEcHHHH---------------------HHHHHHcCCC
Confidence 445555542222 1223455667777777777 44 55555543211 2356678887
Q ss_pred ccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 171 ADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
.+ .+..| .+.+++.++ -.+...+... ..+.|.+.++
T Consensus 73 ~~-~~~~P--~~~i~~~~~-~KY~~~~~~~---t~e~i~~F~~ 108 (111)
T cd03073 73 FS-GGEKP--VVAIRTAKG-KKYVMEEEFS---DVDALEEFLE 108 (111)
T ss_pred cc-cCCCC--EEEEEeCCC-CccCCCcccC---CHHHHHHHHH
Confidence 52 11378 888888776 3333222220 4456666554
No 250
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=73.36 E-value=5.9 Score=27.89 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=40.6
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
+|....|..|++.+.-|++ +|+.+..+.. + +.+++.+|++..+..+.-+....+..++..+..
T Consensus 3 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~ 69 (112)
T cd03034 3 IYHNPRCSKSRNALALLEE-------AGIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPYKELGLA 69 (112)
T ss_pred EEECCCCHHHHHHHHHHHH-------CCCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCC
Confidence 3437889999987544443 4666666553 2 568999999998866544444455555555443
No 251
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=72.74 E-value=26 Score=27.59 Aligned_cols=52 Identities=15% Similarity=0.371 Sum_probs=33.6
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------C----H---HHHHHHHHHcCCC
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------D----S---SSHKAFAKKYRLP 152 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~----~---~~~~~~~~~~~~~ 152 (215)
||..|-+-.|..|..--..|.++.++ .+|-.+++.+| | + +..+.|.+..+..
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~ 67 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLR 67 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCC
Confidence 45566477899999999999999877 36888888875 2 2 3556677776643
No 252
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=72.60 E-value=8.7 Score=24.17 Aligned_cols=16 Identities=13% Similarity=0.002 Sum_probs=11.4
Q ss_pred CCCChhhHHHHHHHHH
Q 028030 104 ADETPGCTKQACAFRD 119 (215)
Q Consensus 104 a~~C~~C~~~~~~l~~ 119 (215)
..+|+.|.+..-.|.+
T Consensus 6 ~~~~p~~~rv~~~L~~ 21 (71)
T cd03060 6 FRRCPYAMRARMALLL 21 (71)
T ss_pred cCCCcHHHHHHHHHHH
Confidence 7889999877554443
No 253
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=71.82 E-value=49 Score=26.46 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=28.9
Q ss_pred HHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEE
Q 028030 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLS 157 (215)
Q Consensus 121 ~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~ 157 (215)
.+++.++|+.++..+......+..++++.++..+++.
T Consensus 25 i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~I~ 61 (256)
T TIGR00099 25 LAKLREKGIKVVLATGRPYKEVKNILKELGLDTPFIT 61 (256)
T ss_pred HHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCCCEEE
Confidence 3455667999999999999888999999888744443
No 254
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=71.54 E-value=26 Score=24.71 Aligned_cols=63 Identities=11% Similarity=0.193 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCcEEEE--EeCCCHHHHHHHHHH----cCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcC
Q 028030 116 AFRDSYEKFKKAGAEVIG--ISGDDSSSHKAFAKK----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDK 187 (215)
Q Consensus 116 ~l~~l~~~~~~~~v~vv~--vs~d~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~ 187 (215)
.|+++.++..+.|+.+|. +.-++-....+++++ .+....+..| ..++++|++.. +| ++++...
T Consensus 12 ~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~~~v~Id--P~~F~~y~I~~-----VP--a~V~~~~ 80 (113)
T PF09673_consen 12 SLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKDDPCPGVQID--PRLFRQYNITA-----VP--AFVVVKD 80 (113)
T ss_pred HHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhccCCCcceeEC--hhHHhhCCceE-----cC--EEEEEcC
Confidence 456666666666666663 544554444444433 2222344454 57999999998 99 5555543
No 255
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=71.52 E-value=29 Score=30.40 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHH-HHHHcCcEEEEEeC---CCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEc
Q 028030 111 TKQACAFRDSYE-KFKKAGAEVIGISG---DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILD 186 (215)
Q Consensus 111 ~~~~~~l~~l~~-~~~~~~v~vv~vs~---d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid 186 (215)
...+..|...+. ..+++.|.+|.... .-.|.++.|++.+++++.++.++. ++..+..... .- .++|||
T Consensus 217 TTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~-el~~ai~~l~-----~~--d~ILVD 288 (407)
T COG1419 217 TTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPK-ELAEAIEALR-----DC--DVILVD 288 (407)
T ss_pred HHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHH-HHHHHHHHhh-----cC--CEEEEe
Confidence 345555555444 22233344444432 346899999999999999988755 3333332222 12 688888
Q ss_pred CCCc
Q 028030 187 KNGV 190 (215)
Q Consensus 187 ~~G~ 190 (215)
--|+
T Consensus 289 TaGr 292 (407)
T COG1419 289 TAGR 292 (407)
T ss_pred CCCC
Confidence 7776
No 256
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=70.18 E-value=22 Score=28.64 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=35.7
Q ss_pred HHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC-eEEEEcCChhH
Q 028030 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP-YTLLSDEGNKV 163 (215)
Q Consensus 121 ~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~-~~~~~d~~~~~ 163 (215)
+.++++.|+.||.+|.-+..++..+.+..+++ .|++..+...+
T Consensus 32 ~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p~iaEnG~aI 75 (274)
T COG3769 32 LLELKDAGVPVILCSSKTRAEMLYLQKSLGVQGLPLIAENGAAI 75 (274)
T ss_pred HHHHHHcCCeEEEeccchHHHHHHHHHhcCCCCCceeecCCceE
Confidence 45667789999999999999999999999998 77777666544
No 257
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=67.71 E-value=9.9 Score=26.85 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=39.7
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCCCe-EEEEcCChhHHHHhCCC
Q 028030 101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRLPY-TLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~g~~ 170 (215)
||....|..|++...-|.+ .|+.+..+.. + +.+++++|++..++.. .-+....+..++..+..
T Consensus 3 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~~lin~~~~~~~~l~~~ 70 (114)
T TIGR00014 3 IYHNPRCSKSRNTLALLED-------KGIEPEVVKYLKNPPTKSELEAIFAKLGLTVAREMIRTKEALYKELGLS 70 (114)
T ss_pred EEECCCCHHHHHHHHHHHH-------CCCCeEEEeccCCCcCHHHHHHHHHHcCCchHHHHHhcCCcHHHHcCCC
Confidence 4447889999987655544 3666666553 2 5689999999988653 22334445555555543
No 258
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=67.27 E-value=34 Score=24.95 Aligned_cols=65 Identities=11% Similarity=0.174 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCcEEE--EEeCCCHHHHHHHHHHcC---CCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCC
Q 028030 115 CAFRDSYEKFKKAGAEVI--GISGDDSSSHKAFAKKYR---LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKN 188 (215)
Q Consensus 115 ~~l~~l~~~~~~~~v~vv--~vs~d~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~ 188 (215)
..|+++..+..+.|..+| |+-.++-.+..+.+.+.. -...+..| ..++++|++.. +| +++++..+
T Consensus 12 ~~Lk~l~~~a~~~g~~~VlRG~~~~~~~~T~~~i~~L~~~~~~~~v~Id--P~lF~~f~I~~-----VP--a~V~~~~~ 81 (130)
T TIGR02742 12 PLLKQLLDQAEALGAPLVIRGLLDNGFKATATRIQSLIKDGGKSGVQID--PQWFKQFDITA-----VP--AFVVVKDG 81 (130)
T ss_pred HHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCCcEEEC--hHHHhhcCceE-----cC--EEEEECCC
Confidence 345555555555555444 444455444444443321 11334344 57999999998 99 66655443
No 259
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=66.38 E-value=23 Score=27.75 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=51.4
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
+...||+-|| ...-.-|+-.=..|..|++++- +..||-|+.... |+ +...+++.-
T Consensus 83 kS~kVVcHFY-~~~f~RCKimDkhLe~LAk~h~--eTrFikvnae~~--------------PF-------lv~kL~IkV- 137 (211)
T KOG1672|consen 83 KSEKVVCHFY-RPEFFRCKIMDKHLEILAKRHV--ETRFIKVNAEKA--------------PF-------LVTKLNIKV- 137 (211)
T ss_pred cCceEEEEEE-cCCCcceehHHHHHHHHHHhcc--cceEEEEecccC--------------ce-------eeeeeeeeE-
Confidence 3456888888 6666789988888999988877 468888865321 22 223556664
Q ss_pred CCCCCCccEEEEEcCCCcEEEEEeC
Q 028030 173 FFGSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 173 ~~g~~p~~~~~lid~~G~v~~~~~g 197 (215)
+| ++.++ ++|+.+.+.+|
T Consensus 138 ----LP--~v~l~-k~g~~~D~iVG 155 (211)
T KOG1672|consen 138 ----LP--TVALF-KNGKTVDYVVG 155 (211)
T ss_pred ----ee--eEEEE-EcCEEEEEEee
Confidence 88 66666 79998888776
No 260
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=65.73 E-value=24 Score=24.63 Aligned_cols=46 Identities=26% Similarity=0.389 Sum_probs=24.1
Q ss_pred EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHHHHHHHH
Q 028030 97 VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSHKAFAKK 148 (215)
Q Consensus 97 ~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~~~~~~~ 148 (215)
-+|.|- -+||++|...-.-|.+ +. -...++-+.-+ +..++++++.+
T Consensus 15 ~VVifS-Ks~C~~c~~~k~ll~~----~~-v~~~vvELD~~~~g~eiq~~l~~ 61 (104)
T KOG1752|consen 15 PVVIFS-KSSCPYCHRAKELLSD----LG-VNPKVVELDEDEDGSEIQKALKK 61 (104)
T ss_pred CEEEEE-CCcCchHHHHHHHHHh----CC-CCCEEEEccCCCCcHHHHHHHHH
Confidence 345566 7999999974333333 22 12344444332 23466666654
No 261
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=65.09 E-value=8.1 Score=28.99 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=24.9
Q ss_pred CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEE
Q 028030 150 RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQ 192 (215)
Q Consensus 150 ~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~ 192 (215)
+.+|....+....-...|.--+ +|...+|+||+.|+|.
T Consensus 118 ~~~f~~~~gn~~~D~~~y~~~g-----i~~~~i~~i~~~~~~~ 155 (157)
T smart00775 118 GNPFYAGFGNRITDVISYSAVG-----IPPSRIFTINPKGEVH 155 (157)
T ss_pred CCCEEEEeCCCchhHHHHHHcC-----CChhhEEEECCCCccc
Confidence 4556665665555555554443 5555899999999985
No 262
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=63.46 E-value=30 Score=27.32 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 115 CAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 115 ~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
|.+++|...++++|.+++-+|..=..-+.-...+.+++
T Consensus 91 ~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~ 128 (227)
T KOG1615|consen 91 PGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIP 128 (227)
T ss_pred CCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCc
Confidence 34555556666666666666654333333333344443
No 263
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=63.43 E-value=21 Score=28.67 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeE
Q 028030 111 TKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYT 154 (215)
Q Consensus 111 ~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~ 154 (215)
....|.+.++.+++.++|+.|+.+|.-....++++.++++..-|
T Consensus 20 ~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p 63 (249)
T TIGR01485 20 NQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTP 63 (249)
T ss_pred hHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCC
Confidence 56778899988888889999999999999999999888876644
No 264
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=63.15 E-value=33 Score=24.08 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=41.7
Q ss_pred CCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC----C-------CHHHHHHHHHHc-C
Q 028030 84 GRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG----D-------DSSSHKAFAKKY-R 150 (215)
Q Consensus 84 g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~----d-------~~~~~~~~~~~~-~ 150 (215)
.+.-.++++.+ .+-||-|+.-..|| -..+....+++.+.|+++|-++. + ..+.+.+.+++. +
T Consensus 25 ~r~g~F~~y~~~~~elvgf~~CgGCp-----g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~g 99 (107)
T PF08821_consen 25 ERKGAFARYDDEDVELVGFFTCGGCP-----GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFG 99 (107)
T ss_pred hccCccccCCCCCeEEEEEeeCCCCC-----hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhC
Confidence 34446677754 58888888333355 55666667777788999998874 2 236666666654 6
Q ss_pred CC
Q 028030 151 LP 152 (215)
Q Consensus 151 ~~ 152 (215)
++
T Consensus 100 i~ 101 (107)
T PF08821_consen 100 IE 101 (107)
T ss_pred CC
Confidence 64
No 265
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=63.14 E-value=80 Score=25.53 Aligned_cols=36 Identities=8% Similarity=0.120 Sum_probs=28.3
Q ss_pred HHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEE
Q 028030 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLS 157 (215)
Q Consensus 122 ~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~ 157 (215)
++++++|+.|+-.+.-....++.++++.+++.+++.
T Consensus 29 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~ 64 (272)
T PRK15126 29 ARLRERDITLTFATGRHVLEMQHILGALSLDAYLIT 64 (272)
T ss_pred HHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCcEEe
Confidence 334567999999999888889999999988755443
No 266
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=63.04 E-value=7.1 Score=31.80 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=24.4
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHH
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFK 125 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~ 125 (215)
.||+.+++.- +.|||.|..+-=.|--...+|.
T Consensus 57 ~Gk~~v~~ig-w~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 57 NGKPEVIFIG-WEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCeeEEEEEe-cccCccchhhHHHHHHHHHhcC
Confidence 5888888888 9999999877666555545555
No 267
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=62.91 E-value=37 Score=21.64 Aligned_cols=19 Identities=16% Similarity=0.378 Sum_probs=11.8
Q ss_pred EEcCCCChhhHHHHHHHHH
Q 028030 101 FYPADETPGCTKQACAFRD 119 (215)
Q Consensus 101 f~~a~~C~~C~~~~~~l~~ 119 (215)
+|...+|+.|.+..-.|.+
T Consensus 4 Ly~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTE 22 (77)
T ss_pred EecCCCCchHHHHHHHHHH
Confidence 3336688989866544444
No 268
>PRK10853 putative reductase; Provisional
Probab=62.81 E-value=19 Score=25.69 Aligned_cols=47 Identities=15% Similarity=0.048 Sum_probs=32.9
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC----CCHHHHHHHHHHcCCC
Q 028030 99 VYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG----DDSSSHKAFAKKYRLP 152 (215)
Q Consensus 99 l~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~----d~~~~~~~~~~~~~~~ 152 (215)
|.+|....|..|++.+.-|.+ +|+.+..+.. -+.+++++|+++.|++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~ 52 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA-------QGIDYRFHDYRVDGLDSELLQGFIDELGWE 52 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH-------cCCCcEEeehccCCcCHHHHHHHHHHcCHH
Confidence 344547889999987655554 3666666653 2568999999988754
No 269
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=62.50 E-value=36 Score=25.32 Aligned_cols=26 Identities=4% Similarity=-0.050 Sum_probs=17.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030 106 ETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138 (215)
Q Consensus 106 ~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~ 138 (215)
+|+.|......|+++ ++.+.-+.++.
T Consensus 15 t~~~C~~ak~iL~~~-------~V~~~e~DVs~ 40 (147)
T cd03031 15 TFEDCNNVRAILESF-------RVKFDERDVSM 40 (147)
T ss_pred cChhHHHHHHHHHHC-------CCcEEEEECCC
Confidence 899998775555543 57776666654
No 270
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=61.84 E-value=19 Score=25.00 Aligned_cols=58 Identities=19% Similarity=0.125 Sum_probs=40.2
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC----CHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030 104 ADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD----DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG 168 (215)
Q Consensus 104 a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g 168 (215)
...|..|++.+.-|. ++|+.+..+..- +.+++.+|++..+..+.-+....+..++.++
T Consensus 3 ~~~C~t~rka~~~L~-------~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~ 64 (110)
T PF03960_consen 3 NPNCSTCRKALKWLE-------ENGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELG 64 (110)
T ss_dssp -TT-HHHHHHHHHHH-------HTT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTT
T ss_pred CCCCHHHHHHHHHHH-------HcCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhh
Confidence 567899988755554 457888888762 4689999999999887766777778888887
No 271
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=60.53 E-value=1.1e+02 Score=26.28 Aligned_cols=90 Identities=16% Similarity=0.257 Sum_probs=56.7
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-----HHHHHHHHHHcCCCeEEE---EcCChhHH
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-----SSSHKAFAKKYRLPYTLL---SDEGNKVR 164 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-----~~~~~~~~~~~~~~~~~~---~d~~~~~~ 164 (215)
.+|+.++.|.--++-+ -.-.+.+|+..|+++|..|+-...|+ .+.++.|.++.|.++.-. .|+..-++
T Consensus 136 ~~~p~Vil~vGVNG~G----KTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVaf 211 (340)
T COG0552 136 EKKPFVILFVGVNGVG----KTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAF 211 (340)
T ss_pred CCCcEEEEEEecCCCc----hHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHH
Confidence 3578788787344433 33456778888888999999999987 367889999988775442 23322222
Q ss_pred HHhCCCccCCCCCCccEEEEEcCCCcE
Q 028030 165 KEWGVPADFFGSLPGRQTYILDKNGVV 191 (215)
Q Consensus 165 ~~~g~~~~~~g~~p~~~~~lid~~G~v 191 (215)
.+..--. -.+.-++++|--||.
T Consensus 212 DAi~~Ak-----ar~~DvvliDTAGRL 233 (340)
T COG0552 212 DAIQAAK-----ARGIDVVLIDTAGRL 233 (340)
T ss_pred HHHHHHH-----HcCCCEEEEeCcccc
Confidence 2211100 011248899999887
No 272
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=60.09 E-value=34 Score=25.50 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEE
Q 028030 112 KQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLS 157 (215)
Q Consensus 112 ~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~ 157 (215)
=.+..|.+|.+++++.|+.++.+..+..+.+.++++++++.-.+..
T Consensus 50 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~ 95 (165)
T PF00875_consen 50 FLLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATAVYFN 95 (165)
T ss_dssp HHHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESEEEEE
T ss_pred HHHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCeeEec
Confidence 3456788899999999999999999988999999999998755543
No 273
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=58.49 E-value=60 Score=28.67 Aligned_cols=30 Identities=7% Similarity=0.206 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCcEEEEEeCCCCCCccHHHH
Q 028030 177 LPGRQTYILDKNGVVQLIYNNQFQPEKHIDET 208 (215)
Q Consensus 177 ~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~i 208 (215)
+| ..|+|+..|+-++...|-+..++..+.|
T Consensus 78 vP--s~ffIg~sGtpLevitg~v~adeL~~~i 107 (506)
T KOG2507|consen 78 VP--SIFFIGFSGTPLEVITGFVTADELASSI 107 (506)
T ss_pred cc--ceeeecCCCceeEEeeccccHHHHHHHH
Confidence 56 9999999999999988866544433333
No 274
>PRK10976 putative hydrolase; Provisional
Probab=58.04 E-value=97 Score=24.86 Aligned_cols=36 Identities=6% Similarity=0.145 Sum_probs=28.4
Q ss_pred HHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEE
Q 028030 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLS 157 (215)
Q Consensus 122 ~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~ 157 (215)
.+++++|+.|+-.+.-....++.+++..+++.+++.
T Consensus 29 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~ 64 (266)
T PRK10976 29 KLLTARGIHFVFATGRHHVDVGQIRDNLEIKSYMIT 64 (266)
T ss_pred HHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCeEEE
Confidence 445667999999999888888889999888755443
No 275
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=57.25 E-value=37 Score=23.98 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=29.4
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCC
Q 028030 101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRL 151 (215)
Q Consensus 101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~ 151 (215)
+|....|..|++...-|.+ +|+.+-.+.. + +.+++++|++..++
T Consensus 4 iy~~p~C~~crkA~~~L~~-------~gi~~~~~d~~~~p~s~~eL~~~l~~~g~ 51 (113)
T cd03033 4 FYEKPGCANNARQKALLEA-------AGHEVEVRDLLTEPWTAETLRPFFGDLPV 51 (113)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCCcEEeehhcCCCCHHHHHHHHHHcCH
Confidence 3437889999977544443 3555555543 3 56899999998764
No 276
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=56.25 E-value=17 Score=23.17 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=21.5
Q ss_pred EEEEEcCCCcEEEEEeCC-CCCCccHHHHHHHHhc
Q 028030 181 QTYILDKNGVVQLIYNNQ-FQPEKHIDETLKFLQS 214 (215)
Q Consensus 181 ~~~lid~~G~v~~~~~g~-~~~~~~~~~il~~l~~ 214 (215)
..|.||++|+|.....-. ......-+++++.+++
T Consensus 20 v~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~~ 54 (79)
T PF03544_consen 20 VEFTIDPDGRVSDVRVIQSSGPPILDEAALRAVKK 54 (79)
T ss_dssp EEEEEETTTEEEEEEEEEESSSSCSHHHHHHHHCC
T ss_pred EEEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHHh
Confidence 678999999999763322 1222345667776653
No 277
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=55.73 E-value=12 Score=23.37 Aligned_cols=15 Identities=0% Similarity=-0.053 Sum_probs=10.5
Q ss_pred CCCChhhHHHHHHHH
Q 028030 104 ADETPGCTKQACAFR 118 (215)
Q Consensus 104 a~~C~~C~~~~~~l~ 118 (215)
..+|+.|.+..-.|.
T Consensus 6 ~~~~~~~~~v~~~l~ 20 (73)
T cd03059 6 GPDDVYSHRVRIVLA 20 (73)
T ss_pred CCCChhHHHHHHHHH
Confidence 677998987755443
No 278
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=54.49 E-value=80 Score=22.80 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=25.9
Q ss_pred EEEcCCCCh--hh----HHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030 100 YFYPADETP--GC----TKQACAFRDSYEKFKKAGAEVIGISGD 137 (215)
Q Consensus 100 ~f~~a~~C~--~C----~~~~~~l~~l~~~~~~~~v~vv~vs~d 137 (215)
.|=|+=||. .| -.++-++....+.++++|++|.-.+..
T Consensus 6 ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~ 49 (123)
T PF06953_consen 6 IFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLA 49 (123)
T ss_dssp EEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETT
T ss_pred EeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccc
Confidence 344566654 34 578889999999999999999988764
No 279
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=54.37 E-value=2.2 Score=34.24 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=25.6
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEE
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEV 131 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~v 131 (215)
.|-+ +|.|+ +.|||.|....+.+.+.+.--.+-++.+
T Consensus 39 ~gew-mi~~~-ap~~psc~~~~~~~~~~a~~s~dL~v~v 75 (248)
T KOG0913|consen 39 TGEW-MIEFG-APWCPSCSDLIPHLENFATVSLDLGVKV 75 (248)
T ss_pred chHH-HHHhc-CCCCccccchHHHHhccCCccCCCceeE
Confidence 4444 45666 9999999999998888765444444443
No 280
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=54.01 E-value=29 Score=27.01 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=34.5
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-----HHHHHHHHHHcCCCeEEEEc
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-----SSSHKAFAKKYRLPYTLLSD 158 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-----~~~~~~~~~~~~~~~~~~~d 158 (215)
++.|.--++++ -.-.+.+++..+..+|-.|..|+.|. .+.++.|.+..++++.....
T Consensus 3 vi~lvGptGvG----KTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~ 64 (196)
T PF00448_consen 3 VIALVGPTGVG----KTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVART 64 (196)
T ss_dssp EEEEEESTTSS----HHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESST
T ss_pred EEEEECCCCCc----hHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhc
Confidence 44555355555 22234555555555566777777774 37889999999988766553
No 281
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=53.54 E-value=1e+02 Score=23.82 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCC
Q 028030 110 CTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNG 189 (215)
Q Consensus 110 C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G 189 (215)
.......|+++ .++|+.++..+.-....++.+++++++..+++...+ +.+ .+.+|
T Consensus 17 ~~~~~~al~~l----~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nG--------------------a~i-~~~~~ 71 (254)
T PF08282_consen 17 SPETIEALKEL----QEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNG--------------------ALI-DDPKG 71 (254)
T ss_dssp CHHHHHHHHHH----HHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGG--------------------TEE-EETTT
T ss_pred CHHHHHHHHhh----cccceEEEEEccCcccccccccccccchhhhccccc--------------------cee-eeccc
Confidence 34555555554 446999999999999999999999888855554322 233 66777
Q ss_pred cEEEEEeCCCCCCccHHHHHHHHh
Q 028030 190 VVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 190 ~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
++.+...= + .+.+.++++.++
T Consensus 72 ~~l~~~~i--~-~~~~~~i~~~~~ 92 (254)
T PF08282_consen 72 KILYEKPI--D-SDDVKKILKYLK 92 (254)
T ss_dssp EEEEEESB----HHHHHHHHHHHH
T ss_pred ccchhhhe--e-ccchhheeehhh
Confidence 77755432 1 344555655544
No 282
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=52.86 E-value=19 Score=23.73 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=16.2
Q ss_pred CCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHH
Q 028030 175 GSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETL 209 (215)
Q Consensus 175 g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il 209 (215)
|..| ..+++|.+|+++....=.....+.+++.|
T Consensus 40 G~~P--~L~l~d~~g~~~E~i~i~~w~~d~i~efL 72 (78)
T PF08806_consen 40 GAPP--ELVLLDEDGEEVERINIEKWKTDEIEEFL 72 (78)
T ss_dssp S-----EEEEE-SSS--SEEEE-SSSSHCHHHHHH
T ss_pred CCCC--EEEEEcCCCCEEEEEEcccCCHHHHHHHH
Confidence 4567 99999999998877544333333344444
No 283
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=51.72 E-value=1.1e+02 Score=23.73 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=62.8
Q ss_pred CCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHH-HHHHHHHH
Q 028030 70 KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS-SHKAFAKK 148 (215)
Q Consensus 70 ~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~-~~~~~~~~ 148 (215)
+.+..|++.+.- +--+-..|-|+++ +.+..|-..+.....|.+.++.++..|+.++-...=-+. ..+.+.+.
T Consensus 10 i~~~~p~i~~Dl---rYat~~NF~g~~i----Y~~~~c~l~~~aA~aL~~a~~~l~~~G~~L~I~D~yRP~~aq~~~w~~ 82 (184)
T PRK10178 10 ITVAFHGVEIDL---KYATADNLTGKPI----YREARCLLHKDAEAALRKAVSIAQLAGLTLRIYDAYRPQQAQQVLWDA 82 (184)
T ss_pred eeecCCCCEEEe---eeccCCCcCCCcc----ccCCeEEECHHHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHh
Confidence 445566666522 1113345678877 446667777899999999999999889998888764443 33333333
Q ss_pred cCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030 149 YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY 195 (215)
Q Consensus 149 ~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~ 195 (215)
.. ...++.++.. |-.....+.+ -+-|+|.+|+.+.+.
T Consensus 83 ~~-~~~yVA~p~~------~S~HsrG~AV---DLTL~d~~G~~ldMG 119 (184)
T PRK10178 83 CP-DPQYVADLGR------GSNHSRGTAI---DLTLVDAHGNILDMG 119 (184)
T ss_pred CC-CcCeeeCCCC------CCCCCCceEE---EEEEECCCCCEecCC
Confidence 32 2233344321 1111111112 467888999886553
No 284
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=51.64 E-value=56 Score=26.96 Aligned_cols=31 Identities=13% Similarity=-0.028 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH
Q 028030 109 GCTKQACAFRDSYEKFKKAGAEVIGISGDDS 139 (215)
Q Consensus 109 ~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~ 139 (215)
-|..+-.....+.++..++|+.++.|-.|++
T Consensus 175 ~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 175 RGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred CcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 3543333333445666777888888877654
No 285
>PRK12359 flavodoxin FldB; Provisional
Probab=51.30 E-value=53 Score=25.12 Aligned_cols=13 Identities=0% Similarity=-0.133 Sum_probs=6.4
Q ss_pred HHHHHHHHcCCCe
Q 028030 141 SHKAFAKKYRLPY 153 (215)
Q Consensus 141 ~~~~~~~~~~~~~ 153 (215)
.+.+.+++.|..+
T Consensus 103 ~l~~~l~~~Ga~i 115 (172)
T PRK12359 103 MLHDKLAPKGVKF 115 (172)
T ss_pred HHHHHHHhCCCeE
Confidence 3445555555543
No 286
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=50.69 E-value=81 Score=22.09 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=35.7
Q ss_pred cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 96 PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 96 ~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
-||+-|. .+ -.....++..+.+.++..++. -.+..|...+.| .++.++++++.
T Consensus 21 NVLvLy~-ks-~k~a~~~Lk~~~~~A~~vkG~-gT~~~vdCgd~e-~kKLCKKlKv~ 73 (112)
T cd03067 21 NVLVLYS-KS-AKSAEALLKLLSDVAQAVKGQ-GTIAWIDCGDSE-SRKLCKKLKVD 73 (112)
T ss_pred cEEEEEe-cc-hhhHHHHHHHHHHHHHHhcCc-eeEEEEecCChH-HHHHHHHHccC
Confidence 3555554 33 355678889999999888876 466777776544 46777776654
No 287
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=50.08 E-value=76 Score=22.94 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=26.4
Q ss_pred HHHHHHcCcEEEEEeCCCH---------------HHHHHHHHHcCCCeEEEE
Q 028030 121 YEKFKKAGAEVIGISGDDS---------------SSHKAFAKKYRLPYTLLS 157 (215)
Q Consensus 121 ~~~~~~~~v~vv~vs~d~~---------------~~~~~~~~~~~~~~~~~~ 157 (215)
.++++++|..|+.+|.-.. ..+.+|+++++++|.-+.
T Consensus 33 L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~ 84 (126)
T TIGR01689 33 LRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIY 84 (126)
T ss_pred HHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEE
Confidence 3445557899999986321 377899999999985443
No 288
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=50.07 E-value=26 Score=20.81 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=11.2
Q ss_pred CCCChhhHHHHHHHHHH
Q 028030 104 ADETPGCTKQACAFRDS 120 (215)
Q Consensus 104 a~~C~~C~~~~~~l~~l 120 (215)
..+|+.|.+..-.|+..
T Consensus 6 ~~~~~~~~~~~~~l~~~ 22 (71)
T cd00570 6 FPGSPRSLRVRLALEEK 22 (71)
T ss_pred CCCCccHHHHHHHHHHc
Confidence 56799998665554443
No 289
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=50.05 E-value=60 Score=22.90 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCC--------HHHHHHHHHHcCCCeEE
Q 028030 113 QACAFRDSYEKFKKAGAEVIGISGDD--------SSSHKAFAKKYRLPYTL 155 (215)
Q Consensus 113 ~~~~l~~l~~~~~~~~v~vv~vs~d~--------~~~~~~~~~~~~~~~~~ 155 (215)
..+.+.++.+.++++|+.++.+|... .+.++..++.+++.+..
T Consensus 26 ~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~ 76 (132)
T TIGR01662 26 LYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDV 76 (132)
T ss_pred eCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEE
Confidence 35666777777788899999998766 67788888988887443
No 290
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=49.03 E-value=54 Score=22.50 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=31.5
Q ss_pred EEEEeCCCHHHHHHHHHHcCCCeE---EEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEE
Q 028030 131 VIGISGDDSSSHKAFAKKYRLPYT---LLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194 (215)
Q Consensus 131 vv~vs~d~~~~~~~~~~~~~~~~~---~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~ 194 (215)
.+.+.+++-++..+.++..|+++. +...+. ...+ | . +..++.||+|.++..
T Consensus 58 ~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~~---~~~~-------g-~--r~f~~~DPdGn~~~~ 111 (113)
T cd08356 58 MLHLEVDDLEAYYEHIKALGLPKKFPGVKLPPI---TQPW-------W-G--REFFLHDPSGVLWHI 111 (113)
T ss_pred EEEEEECCHHHHHHHHHHcCCcccccceecCcc---ccCC-------C-c--EEEEEECCCccEEEe
Confidence 456788888888788888887631 111111 1111 1 2 379999999998754
No 291
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=48.80 E-value=1.8e+02 Score=25.17 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=29.2
Q ss_pred cCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030 158 DEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 158 d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
..+.++++++|+.. .+ .++++ ++|+++... |....+..++-++.+++
T Consensus 99 ~Kd~klAKKLgv~E-----~~--SiyVf-kd~~~IEyd-G~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 99 KKDAKLAKKLGVEE-----EG--SIYVF-KDGEVIEYD-GERSADTLVEFLLDLLE 145 (383)
T ss_dssp TTTHHHHHHHT--S-----TT--EEEEE-ETTEEEEE--S--SHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccc-----cC--cEEEE-ECCcEEEec-CccCHHHHHHHHHHhcc
Confidence 45678999999986 66 77777 678877655 65555555566665554
No 292
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=48.75 E-value=57 Score=26.32 Aligned_cols=56 Identities=14% Similarity=0.312 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeE--EEEcCChhH
Q 028030 108 PGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYT--LLSDEGNKV 163 (215)
Q Consensus 108 ~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~--~~~d~~~~~ 163 (215)
+.+...+..|.++.+.....++.++.++.-+.+..++.+++++++.| ++.+.+.++
T Consensus 15 ~~~~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l~~Pd~~I~svGt~I 72 (247)
T PF05116_consen 15 DGDDEALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYNLPQPDYIITSVGTEI 72 (247)
T ss_dssp HCHHHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT-EE-SEEEETTTTEE
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCCCCCCCEEEecCCeEE
Confidence 45677778888877633345799999999999999999999887765 445554444
No 293
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=48.31 E-value=97 Score=22.01 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=29.7
Q ss_pred HHHHHHHHcCcEEEEEeCCCHHHHHHHH---HHcCCCeEEEEcCC
Q 028030 119 DSYEKFKKAGAEVIGISGDDSSSHKAFA---KKYRLPYTLLSDEG 160 (215)
Q Consensus 119 ~l~~~~~~~~v~vv~vs~d~~~~~~~~~---~~~~~~~~~~~d~~ 160 (215)
+.+++|...|..-|.+-.++++++.+.. +..++++.++.|..
T Consensus 39 ~~~~~W~~~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v~DAG 83 (115)
T TIGR00283 39 SLRRKWLDEGQKKVVLKVNSLEELLEIYHKAESLGLVTGLIRDAG 83 (115)
T ss_pred HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3456777778887888888877665554 46777887777754
No 294
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=48.28 E-value=1.4e+02 Score=24.47 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=14.0
Q ss_pred HHcCcEEEEEeCC-----CHHHHHHHHHHcCCCeEEE
Q 028030 125 KKAGAEVIGISGD-----DSSSHKAFAKKYRLPYTLL 156 (215)
Q Consensus 125 ~~~~v~vv~vs~d-----~~~~~~~~~~~~~~~~~~~ 156 (215)
++.|+.++.++-+ |.+++.+.+++.+..+.++
T Consensus 50 ~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~ 86 (279)
T TIGR03590 50 LSAGFPVYELPDESSRYDDALELINLLEEEKFDILIV 86 (279)
T ss_pred HHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEE
Confidence 3445555554331 2233444555554444443
No 295
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=47.50 E-value=1.2e+02 Score=26.94 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEE
Q 028030 139 SSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQ 192 (215)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~ 192 (215)
++.+++..++.+.++-+..|.+++ +..++|++|+++
T Consensus 223 ~e~l~~~v~~~~adlGia~DgDgD------------------R~~vvd~~G~~l 258 (446)
T PRK14324 223 PENLAQEVKRYRADIGFAFDGDAD------------------RLVVVDEKGEIV 258 (446)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCc------------------eEEEECCCCCEe
Confidence 345555555555555555554422 456667777654
No 296
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=46.31 E-value=65 Score=24.53 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=40.8
Q ss_pred CcEEEEEeCCC-----HHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE--eCCCC
Q 028030 128 GAEVIGISGDD-----SSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY--NNQFQ 200 (215)
Q Consensus 128 ~v~vv~vs~d~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~--~g~~~ 200 (215)
.+-|||+--+. ...+.+|+++++++..++-.++ ... ++-+++..|+++... .....
T Consensus 113 dlLIvG~Gd~~~p~~v~~~V~~F~k~~ki~lEi~dte~--A~a---------------TfNfLNaEgR~VaaAL~Pp~v~ 175 (196)
T KOG3363|consen 113 DLLIVGCGDKKHPDKVRPSVRQFVKSHKIKLEIVDTEN--AAA---------------TFNFLNAEGRYVAAALLPPGVT 175 (196)
T ss_pred cEEEEecCCcCCchhcCHHHHHHHHHhCcceEEecchh--hhh---------------HhhhccccccEEEEEecCCccc
Confidence 35566654321 2588999999999998875433 222 333466788877652 33334
Q ss_pred CCccHHHHHHHHh
Q 028030 201 PEKHIDETLKFLQ 213 (215)
Q Consensus 201 ~~~~~~~il~~l~ 213 (215)
.+.....++.+|+
T Consensus 176 s~~e~~~~~a~lk 188 (196)
T KOG3363|consen 176 SDKEYGRALALLK 188 (196)
T ss_pred ccchhhHHHHHhh
Confidence 4454555555554
No 297
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=45.34 E-value=55 Score=22.36 Aligned_cols=40 Identities=8% Similarity=0.147 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCC
Q 028030 112 KQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRL 151 (215)
Q Consensus 112 ~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~ 151 (215)
...+.+.++.++++++|+.++-+|....+.++.+++..++
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 4556666777777778999999999888999999998887
No 298
>PHA02087 hypothetical protein
Probab=45.32 E-value=37 Score=21.68 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=31.5
Q ss_pred EEEEEeCCCHHHHHHHHHHcCC--CeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEE
Q 028030 130 EVIGISGDDSSSHKAFAKKYRL--PYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194 (215)
Q Consensus 130 ~vv~vs~d~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~ 194 (215)
.++-|-..+++.-++|++.--+ .|.-.. -.+++..|.-.. .- .+.|+|.||+++..
T Consensus 2 ~i~rvkfks~ehrk~fa~s~~yn~~f~k~m--pdefw~~~d~nk-----~v--~y~lvdsdg~~iel 59 (83)
T PHA02087 2 KIVRVKFKSPEHRKAFAESEWYNEEFEKFM--PDEFWAKFDPNK-----LV--QYMLVDSDGVKIEL 59 (83)
T ss_pred ceEEEEcCCHHHHHHHHhhhHHHHHHHhhC--cHHHHhcCCCcc-----ce--eEEEEcCCCcEEEC
Confidence 3555666677766666654222 222111 123444444433 33 68999999999875
No 299
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=45.29 E-value=86 Score=24.41 Aligned_cols=35 Identities=26% Similarity=0.175 Sum_probs=26.7
Q ss_pred HHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEE
Q 028030 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLL 156 (215)
Q Consensus 122 ~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~ 156 (215)
.+++++|+.|+..+.-....+..+.+.++++-+++
T Consensus 30 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i 64 (230)
T PRK01158 30 RKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVI 64 (230)
T ss_pred HHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEE
Confidence 44556799999999888888888888888764443
No 300
>PLN02367 lactoylglutathione lyase
Probab=45.03 E-value=1.2e+02 Score=24.46 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=39.9
Q ss_pred cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030 127 AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 127 ~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g 197 (215)
.|+.-|++.++|-++..+.++..|+++.- .+.. +- . .+..|+-|+||.++.....
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a~Gv~~v~--~P~~------g~-------~-~riaFIkDPDGn~IEL~e~ 222 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEELGVEFVK--KPND------GK-------M-KGIAFIKDPDGYWIEIFDL 222 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHHCCCEEEe--CCcc------CC-------c-eEEEEEECCCCCEEEEEec
Confidence 37889999999999888889998988752 2210 10 1 1257889999999987654
No 301
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=44.67 E-value=1e+02 Score=21.14 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=34.0
Q ss_pred HHHHHcCcEEEEEeCCCH----HHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 122 EKFKKAGAEVIGISGDDS----SSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 122 ~~~~~~~v~vv~vs~d~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
+..+.....+|.|+.|-+ +.+..+++.+++++..+.....++..+.|..
T Consensus 26 kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~Gk~ 78 (99)
T PRK01018 26 KAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCGKP 78 (99)
T ss_pred HHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhCCC
Confidence 334444577777777644 4667777888888766555667888888865
No 302
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=44.50 E-value=1.1e+02 Score=24.45 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=61.5
Q ss_pred CeEEeCCCCCeee----cCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEEeC--------CCHHHH
Q 028030 76 SFTLKDQEGRNVS----LSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGISG--------DDSSSH 142 (215)
Q Consensus 76 ~f~l~~~~g~~~~----l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~--------d~~~~~ 142 (215)
-+.+.|.||+++. .++.--.-++++|+ . .....+++.+.++++ |+++---+. +++...
T Consensus 42 V~~vlD~d~~Pvag~~~~advVRDGiVvdf~-e--------aveiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~ 112 (277)
T COG4820 42 VSMVLDRDGQPVAGCLDWADVVRDGIVVDFF-E--------AVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRIS 112 (277)
T ss_pred EEEEEcCCCCeEEEEehhhhhhccceEEehh-h--------HHHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEE
Confidence 4567788998864 34432234778887 1 223344444555443 666653321 233333
Q ss_pred HHHHHHcCCCeEEEEcCChhHHHHhCCCcc----CCCCCCccEEEEEcCCCcEEEEE
Q 028030 143 KAFAKKYRLPYTLLSDEGNKVRKEWGVPAD----FFGSLPGRQTYILDKNGVVQLIY 195 (215)
Q Consensus 143 ~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~----~~g~~p~~~~~lid~~G~v~~~~ 195 (215)
-..++.-|+....+.|+-...+.-+++.+. ..|.. +-+-|-++|+|++..
T Consensus 113 iNViESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGT---TGIsi~kkGkViy~A 166 (277)
T COG4820 113 INVIESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGT---TGISIVKKGKVIYSA 166 (277)
T ss_pred EEeecccCceeeeecCCchhHHHHhccCCCcEEEeCCCc---ceeEEEEcCcEEEec
Confidence 344455567777777887777777777652 22333 334455899998763
No 303
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=44.32 E-value=1.2e+02 Score=22.07 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=37.3
Q ss_pred cCcEEEEEeCCCHHHHH---HHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030 127 AGAEVIGISGDDSSSHK---AFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 127 ~~v~vv~vs~d~~~~~~---~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g 197 (215)
.|+.=|++.+++.+++. +.+++.|+.+.. .. .....|... ..|+-|++|.++..+.+
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~--~~----------g~~~~g~~~--~~y~~DPdG~~iEl~~~ 125 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVW--GV----------GRHILGSQI--FDYWFDPWGFIVEHYTD 125 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEee--cC----------CccCCCCCE--EEEEECCCCCEEEEEcC
Confidence 47888999999888775 777788876432 11 110011122 56889999999987654
No 304
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=44.00 E-value=22 Score=26.15 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=23.3
Q ss_pred EEEEEEcCCCChhhH-------HHHHHHHHHHHHHHHcCcEEEE
Q 028030 97 VVVYFYPADETPGCT-------KQACAFRDSYEKFKKAGAEVIG 133 (215)
Q Consensus 97 ~ll~f~~a~~C~~C~-------~~~~~l~~l~~~~~~~~v~vv~ 133 (215)
.=|.|- ++.|-.|. ..-.+++++.++|...++.+|.
T Consensus 31 aevvfs-~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvl 73 (150)
T PF04723_consen 31 AEVVFS-STECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVL 73 (150)
T ss_pred ceEEEE-eeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEe
Confidence 445666 88888884 3445677777777766544443
No 305
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=43.83 E-value=19 Score=27.48 Aligned_cols=34 Identities=18% Similarity=0.111 Sum_probs=24.5
Q ss_pred EEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe
Q 028030 100 YFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS 135 (215)
Q Consensus 100 ~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs 135 (215)
.|. -+.|+.|-..-|.+.++..+|+.+ +.+-.|.
T Consensus 2 ~F~-dPlc~~C~~~E~~l~kl~~~~~~~-i~~~~i~ 35 (176)
T PF13743_consen 2 LFV-DPLCSWCWGFEPELRKLKEEYGNK-IEFRFIP 35 (176)
T ss_dssp EEE--TT-HHHHHHHHHHHHHHHHS-TT-EEEEEEE
T ss_pred eee-CCCChHHHHhHHHHHHHHHHcCCc-EEEEEEE
Confidence 356 889999999999999999999975 5544443
No 306
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=43.58 E-value=2.2e+02 Score=25.30 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=34.4
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-----HHHHHHHHHHcCCCeEE
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-----SSSHKAFAKKYRLPYTL 155 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-----~~~~~~~~~~~~~~~~~ 155 (215)
+++.++.|+.-.+++ -.....+++..+.++|..+..|+.|. .+.++.|.+..++++..
T Consensus 93 ~~p~vI~lvG~~GsG----KTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~ 155 (437)
T PRK00771 93 LKPQTIMLVGLQGSG----KTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYG 155 (437)
T ss_pred CCCeEEEEECCCCCc----HHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEe
Confidence 467777777334343 22233444455556677888888775 24566777777776543
No 307
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=43.19 E-value=1.1e+02 Score=21.25 Aligned_cols=53 Identities=15% Similarity=0.014 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHH---HHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEc
Q 028030 110 CTKQACAFRDSYEK---FKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILD 186 (215)
Q Consensus 110 C~~~~~~l~~l~~~---~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid 186 (215)
-......+.+++++ ++++ +.++.+..+... .....||+..+ -+| .+.+++
T Consensus 29 ~~~~~~~~~~vAk~~~~~kgk-i~Fv~~d~~~~~---------------------~~~~~fgl~~~---~~P--~i~i~~ 81 (111)
T cd03072 29 LESLKEFKQAVARQLISEKGA-INFLTADGDKFR---------------------HPLLHLGKTPA---DLP--VIAIDS 81 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCce-EEEEEEechHhh---------------------hHHHHcCCCHh---HCC--EEEEEc
Confidence 45666777778888 7754 666666543322 25666777642 167 777777
Q ss_pred CCC
Q 028030 187 KNG 189 (215)
Q Consensus 187 ~~G 189 (215)
-++
T Consensus 82 ~~~ 84 (111)
T cd03072 82 FRH 84 (111)
T ss_pred chh
Confidence 655
No 308
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=43.03 E-value=1e+02 Score=22.03 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=27.7
Q ss_pred CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--CHHHHHHHH
Q 028030 95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--DSSSHKAFA 146 (215)
Q Consensus 95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--~~~~~~~~~ 146 (215)
...+|.++ ++..+.... ...+..++++++++.++.|.+. +.+.+.++.
T Consensus 103 ~~~~iili-TDG~~~~~~---~~~~~~~~~~~~~v~v~~i~~g~~~~~~l~~la 152 (161)
T cd01450 103 VPKVIIVL-TDGRSDDGG---DPKEAAAKLKDEGIKVFVVGVGPADEEELREIA 152 (161)
T ss_pred CCeEEEEE-CCCCCCCCc---chHHHHHHHHHCCCEEEEEeccccCHHHHHHHh
Confidence 34444555 565554432 4555666677778888887765 444444444
No 309
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=42.98 E-value=1.6e+02 Score=26.05 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=7.9
Q ss_pred EEEEEcCCCcEE
Q 028030 181 QTYILDKNGVVQ 192 (215)
Q Consensus 181 ~~~lid~~G~v~ 192 (215)
+..++|.+|+++
T Consensus 248 R~~ivd~~G~~i 259 (448)
T PRK14315 248 RVIIVDEKGHVV 259 (448)
T ss_pred eEEEEcCCCcEe
Confidence 566677777664
No 310
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=42.76 E-value=1.1e+02 Score=22.56 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=40.3
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 173 (215)
.++-++++| -..|+.|......|.+.- .+.++++..+.. .+...+.+..|+..+
T Consensus 6 ~~p~~vvly-DG~C~lC~~~vrfLi~~D---~~~~i~f~~~q~---------------------e~g~~~l~~~~l~~~- 59 (137)
T COG3011 6 KKPDLVVLY-DGVCPLCDGWVRFLIRRD---QGGRIRFAALQS---------------------EPGQALLEAAGLDPE- 59 (137)
T ss_pred CCCCEEEEE-CCcchhHHHHHHHHHHhc---cCCcEEEEeccC---------------------chhhhHHhhcCCChh-
Confidence 367777788 788999998766665541 122455555532 123445555566542
Q ss_pred CCCCCccEEEEEcCCCcEE
Q 028030 174 FGSLPGRQTYILDKNGVVQ 192 (215)
Q Consensus 174 ~g~~p~~~~~lid~~G~v~ 192 (215)
.+ ..++++++|++.
T Consensus 60 ---~~--~s~~~~~~g~~~ 73 (137)
T COG3011 60 ---DV--DSVLLVEAGQLL 73 (137)
T ss_pred ---hh--heeeEecCCceE
Confidence 23 566677777764
No 311
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=42.67 E-value=1.1e+02 Score=21.00 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=15.1
Q ss_pred EEEEEcCCCcEEEEEeCC
Q 028030 181 QTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 181 ~~~lid~~G~v~~~~~g~ 198 (215)
..++.|++|..+..+.++
T Consensus 101 ~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 101 LIRFADPDGNRHELFWGP 118 (120)
T ss_pred EEEEECCCCCEEEEEecc
Confidence 689999999999877653
No 312
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=42.60 E-value=1.4e+02 Score=23.87 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCcEEEEEeCCC-------HHHHHHHHHHcCCCeEEEEc
Q 028030 114 ACAFRDSYEKFKKAGAEVIGISGDD-------SSSHKAFAKKYRLPYTLLSD 158 (215)
Q Consensus 114 ~~~l~~l~~~~~~~~v~vv~vs~d~-------~~~~~~~~~~~~~~~~~~~d 158 (215)
+-.|+..+++++++|..|..+..|+ .+.+.++++++++.-..+.+
T Consensus 48 ~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~ 99 (224)
T PF04244_consen 48 FSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVME 99 (224)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE-
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEEC
Confidence 4466677888899999999998874 35777888888776444443
No 313
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=42.12 E-value=1.5e+02 Score=22.79 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=38.2
Q ss_pred cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030 127 AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 127 ~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g 197 (215)
.|+.-+++.+++-+...+.++..|+++.- .+. .+ ...+..|+-|++|..+.....
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~--~p~------~~--------~~~~~~fi~DPdG~~IEl~e~ 174 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEKLGVEFVK--KPD------DG--------KMKGLAFIKDPDGYWIEIFDL 174 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHHCCCeEEe--CCc------cC--------CceeEEEEECCCCCEEEEEEC
Confidence 37888999999988888888888887542 111 00 112257889999999877643
No 314
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=41.78 E-value=66 Score=25.84 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcC
Q 028030 113 QACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDE 159 (215)
Q Consensus 113 ~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~ 159 (215)
..+...+..++++++|+.++-++.-....+.+++++.+.+.+++..+
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~N 67 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFN 67 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeC
Confidence 34444555557778899999999999999999999999886555433
No 315
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.70 E-value=2.1e+02 Score=25.26 Aligned_cols=45 Identities=4% Similarity=-0.086 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEE
Q 028030 112 KQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLL 156 (215)
Q Consensus 112 ~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~ 156 (215)
=.+..|.+|.+++++.|+.++.+..+..+.+.++++++++.-.+.
T Consensus 75 Fl~esL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~i~~V~~ 119 (454)
T TIGR00591 75 FMLGGLDEVANECERLIIPFHLLDGPPKELLPYFVDLHAAAAVVT 119 (454)
T ss_pred HHHHHHHHHHHHHHHcCCceEEeecChHHHHHHHHHHcCCCEEEE
Confidence 345578889999999999999888888888899999888874443
No 316
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=41.29 E-value=49 Score=26.18 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=34.9
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS 135 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs 135 (215)
.|-||+|..| ...-+.|.-..-.|++++.+|++ +.||-+.
T Consensus 110 ~gvwVvvhLy-~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~ 149 (240)
T KOG3170|consen 110 EGVWVVVHLY-KQGVPLCALLSHHLQSLACKFPQ--IKFVKIP 149 (240)
T ss_pred CccEEEEEee-ccccHHHHHHHHHHHHHhhcCCc--ceEEecc
Confidence 4779999999 99999999999999999999995 6777654
No 317
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=41.18 E-value=86 Score=19.32 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=9.8
Q ss_pred CCCChhhHHHHHHHH
Q 028030 104 ADETPGCTKQACAFR 118 (215)
Q Consensus 104 a~~C~~C~~~~~~l~ 118 (215)
..+|+.|.+..-.|.
T Consensus 6 ~~~~p~~~rvr~~L~ 20 (71)
T cd03037 6 YEHCPFCVKARMIAG 20 (71)
T ss_pred cCCCcHhHHHHHHHH
Confidence 567999986544443
No 318
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=41.17 E-value=48 Score=24.95 Aligned_cols=42 Identities=29% Similarity=0.387 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCCC-HHHHHHHHHHcCCCe
Q 028030 112 KQACAFRDSYEKFKKAGAEVIGISGDD-SSSHKAFAKKYRLPY 153 (215)
Q Consensus 112 ~~~~~l~~l~~~~~~~~v~vv~vs~d~-~~~~~~~~~~~~~~~ 153 (215)
..++.+.++.+.+++.|+.++-+|..+ ....+.+.+.+++.+
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~ 85 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPV 85 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEE
Confidence 345667777778888888888888766 455566666776653
No 319
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=41.05 E-value=25 Score=21.99 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=10.0
Q ss_pred CCCChhhHHHHHHHHH
Q 028030 104 ADETPGCTKQACAFRD 119 (215)
Q Consensus 104 a~~C~~C~~~~~~l~~ 119 (215)
...|+.|++..-.|.+
T Consensus 6 ~~~~~~~~~v~~~l~~ 21 (74)
T cd03045 6 LPGSPPCRAVLLTAKA 21 (74)
T ss_pred CCCCCcHHHHHHHHHH
Confidence 6778888755444443
No 320
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=40.88 E-value=39 Score=25.50 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=31.8
Q ss_pred eCCCHHHHHHHHHHcCCCeEEE----Ec--------CChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 135 SGDDSSSHKAFAKKYRLPYTLL----SD--------EGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 135 s~d~~~~~~~~~~~~~~~~~~~----~d--------~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
+.++.+.+.+.+++.|++...+ .+ .+...+..+|+.+ +| +|+| +|+ +.+.|.
T Consensus 119 ~i~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~G-----vP---~~vv--~g~--~~~~G~ 182 (193)
T PF01323_consen 119 DISDPDVLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFG-----VP---TFVV--NGK--YRFFGA 182 (193)
T ss_dssp -TSSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSS-----SS---EEEE--TTT--EEEESC
T ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcc-----cC---EEEE--CCE--EEEECC
Confidence 4567788899999988863221 11 2334577889987 99 5555 566 556664
No 321
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=40.78 E-value=1.2e+02 Score=21.06 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=22.2
Q ss_pred HHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEE
Q 028030 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTL 155 (215)
Q Consensus 121 ~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~ 155 (215)
.+..+++|+.+|.|+.+. .+.++.++.+.....
T Consensus 63 ~~~a~~~g~~iI~IT~~~--~l~~~~~~~~~~~~~ 95 (119)
T cd05017 63 VEQAKERGAKIVAITSGG--KLLEMAREHGVPVII 95 (119)
T ss_pred HHHHHHCCCEEEEEeCCc--hHHHHHHHcCCcEEE
Confidence 344456689999999655 377777777655433
No 322
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.76 E-value=67 Score=25.12 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=27.5
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHcCcEEEEE--eCC----C-----HHHHHHHHHHcCCCeEE
Q 028030 104 ADETPGCTKQACAFRDSYEKFKKAGAEVIGI--SGD----D-----SSSHKAFAKKYRLPYTL 155 (215)
Q Consensus 104 a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v--s~d----~-----~~~~~~~~~~~~~~~~~ 155 (215)
+.||.+|... .|..+ .+.|++++.. +.+ + .++.++++++++++|.-
T Consensus 9 H~CCAPcs~y--~le~l----~~~~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~ie 65 (204)
T COG1636 9 HSCCAPCSGY--VLEKL----RDSGIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIE 65 (204)
T ss_pred EeecCCCcHH--HHHHH----HhcCcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeee
Confidence 6789999743 23333 2335665443 332 1 25778899999977643
No 323
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=40.22 E-value=56 Score=24.88 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 114 ACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 114 ~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
.+...+..+.+++.|+.+.-++.|+.......++..++.
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~ 167 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF 167 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC
T ss_pred hhhhhhhhhhhhccCcceeeeeccccccccccccccccc
Confidence 445555666677778999999999999999999999984
No 324
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=40.19 E-value=74 Score=20.17 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=19.5
Q ss_pred CCCCeeecCCcCCCcEEEEEEcCCCChhhH
Q 028030 82 QEGRNVSLSKFKGKPVVVYFYPADETPGCT 111 (215)
Q Consensus 82 ~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~ 111 (215)
.+|-.+.+-++++..+.|.|- +.| ..|.
T Consensus 14 ~dGGdv~lv~v~~~~V~V~l~-GaC-~gC~ 41 (68)
T PF01106_consen 14 SDGGDVELVDVDDGVVYVRLT-GAC-SGCP 41 (68)
T ss_dssp HTTEEEEEEEEETTEEEEEEE-SSC-CSSC
T ss_pred hcCCcEEEEEecCCEEEEEEE-eCC-CCCC
Confidence 367778888887777788887 554 4453
No 325
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=40.17 E-value=33 Score=26.02 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=24.6
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEE
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVI 132 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv 132 (215)
|.+|+ -..||.|-...+.|.++.++++ .+++|.
T Consensus 3 i~~~~-D~~cp~c~~~~~~l~~l~~~~~-~~~~v~ 35 (193)
T cd03025 3 LYYFI-DPLCGWCYGFEPLLEKLKEEYG-GGIEVE 35 (193)
T ss_pred EEEEE-CCCCchhhCchHHHHHHHHHhC-CCceEE
Confidence 34444 8889999999999999999884 234444
No 326
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=39.68 E-value=1.9e+02 Score=23.01 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=27.5
Q ss_pred HHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEE
Q 028030 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLS 157 (215)
Q Consensus 122 ~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~ 157 (215)
.+++++|+.|+-.+.-....+..+++++++..+++.
T Consensus 30 ~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~ 65 (272)
T PRK10530 30 ARAREAGYKVIIVTGRHHVAIHPFYQALALDTPAIC 65 (272)
T ss_pred HHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCCEEE
Confidence 445667999999988888888888888887754443
No 327
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=39.45 E-value=51 Score=20.52 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=19.5
Q ss_pred EEEEEcCCCcEEEEEeCCCCCC-ccHHHHHHHHh
Q 028030 181 QTYILDKNGVVQLIYNNQFQPE-KHIDETLKFLQ 213 (215)
Q Consensus 181 ~~~lid~~G~v~~~~~g~~~~~-~~~~~il~~l~ 213 (215)
-.|.||++|+|.....-....+ ..-+.++++++
T Consensus 14 v~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~ 47 (74)
T TIGR01352 14 VRFTVDADGRVTSVSVLKSSGDEALDRAALEAVR 47 (74)
T ss_pred EEEEECCCCCEEEEEEEEcCCChhHHHHHHHHHH
Confidence 6799999999987643221212 22245555554
No 328
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=39.08 E-value=1.9e+02 Score=22.74 Aligned_cols=29 Identities=28% Similarity=0.204 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHcCcEEEEEeCCCHHHH
Q 028030 114 ACAFRDSYEKFKKAGAEVIGISGDDSSSH 142 (215)
Q Consensus 114 ~~~l~~l~~~~~~~~v~vv~vs~d~~~~~ 142 (215)
.|...++.+.+++.|.+++-||..-..-+
T Consensus 79 ~~ga~elv~~lk~~G~~v~iiSgg~~~lv 107 (212)
T COG0560 79 TPGAEELVAALKAAGAKVVIISGGFTFLV 107 (212)
T ss_pred CccHHHHHHHHHHCCCEEEEEcCChHHHH
Confidence 33444444444545555555554433333
No 329
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=39.07 E-value=1.3e+02 Score=21.61 Aligned_cols=45 Identities=9% Similarity=0.173 Sum_probs=30.9
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC----CCHHHHHHHHHHcC
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG----DDSSSHKAFAKKYR 150 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~----d~~~~~~~~~~~~~ 150 (215)
+..+. ...|..|++.+.-|.+ +|+.+-.+.. -+.+++++|++..+
T Consensus 3 i~iY~-~p~Cst~RKA~~~L~~-------~gi~~~~~d~~~~p~t~~eL~~~l~~~g 51 (126)
T TIGR01616 3 IIFYE-KPGCANNARQKAALKA-------SGHDVEVQDILKEPWHADTLRPYFGNKP 51 (126)
T ss_pred EEEEe-CCCCHHHHHHHHHHHH-------CCCCcEEEeccCCCcCHHHHHHHHHHcC
Confidence 33444 7789999987655544 4666666654 25689999999865
No 330
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=39.06 E-value=98 Score=20.73 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=29.9
Q ss_pred EEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030 131 VIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY 195 (215)
Q Consensus 131 vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~ 195 (215)
.+.+.+++.+++.+.+++.|+++.. ++.. ..+| .- ..++.|++|..+...
T Consensus 60 ~i~~~v~d~~~~~~~l~~~G~~~~~--~~~~---~~~g--------~~--~~~~~DP~Gn~i~~~ 109 (112)
T cd07238 60 DLSIEVDDVDAALARAVAAGFAIVY--GPTD---EPWG--------VR--RFFVRDPFGKLVNIL 109 (112)
T ss_pred EEEEEeCCHHHHHHHHHhcCCeEec--CCcc---CCCc--------eE--EEEEECCCCCEEEEE
Confidence 4556667776666666666665432 2211 0122 22 678999999988654
No 331
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=38.99 E-value=1.2e+02 Score=25.56 Aligned_cols=43 Identities=9% Similarity=0.253 Sum_probs=33.8
Q ss_pred HHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHH
Q 028030 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVR 164 (215)
Q Consensus 122 ~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~ 164 (215)
++++++|+.||..|.-+..++..+.++.++..+++..+...+.
T Consensus 28 ~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p~I~eNGA~I~ 70 (302)
T PRK12702 28 AALERRSIPLVLYSLRTRAQLEHLCRQLRLEHPFICEDGSAIY 70 (302)
T ss_pred HHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEEeCCcEEE
Confidence 3445579999999999999999999999998777766554443
No 332
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=38.94 E-value=42 Score=19.82 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=20.0
Q ss_pred EEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 181 QTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 181 ~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
+..|.+.||+|+....+ +......+.-++.|++
T Consensus 7 ~f~L~a~ng~viasse~-Y~sk~~a~~~I~~Vk~ 39 (49)
T PF07411_consen 7 RFRLKAGNGEVIASSEG-YSSKADAEKGIESVKK 39 (49)
T ss_dssp EEEEE-TTS-EEEEBEE-BSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEecCC-cCCHHHHHHHHHHHHH
Confidence 67889999999985444 3444555556655543
No 333
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=38.88 E-value=1.1e+02 Score=23.71 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=31.1
Q ss_pred HHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC-eEEEEcCC
Q 028030 120 SYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP-YTLLSDEG 160 (215)
Q Consensus 120 l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~-~~~~~d~~ 160 (215)
..++++++|+.++-+|.-....++.+++..++. .+++..++
T Consensus 24 ~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~~~~~I~~NG 65 (221)
T TIGR02463 24 WLTRLQEAGIPVILCTSKTAAEVEYLQKALGLTGDPYIAENG 65 (221)
T ss_pred HHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCCcEEEeCC
Confidence 334456679999999999999999999998876 55555443
No 334
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=38.88 E-value=2.1e+02 Score=25.93 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHcCcEEEEEeC
Q 028030 108 PGCTKQACAFRDSYEKFKKAGAEVIGISG 136 (215)
Q Consensus 108 ~~C~~~~~~l~~l~~~~~~~~v~vv~vs~ 136 (215)
..-.++...|-++..+++++|+.+|.||+
T Consensus 175 aLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISH 203 (500)
T COG1129 175 ALTVKETERLFDLIRRLKAQGVAIIYISH 203 (500)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 44566666777777777777777777765
No 335
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=38.74 E-value=69 Score=23.77 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHcCcEEEE
Q 028030 116 AFRDSYEKFKKAGAEVIG 133 (215)
Q Consensus 116 ~l~~l~~~~~~~~v~vv~ 133 (215)
.|+++.++++..|++-|.
T Consensus 72 ~L~~w~~~l~~~GFkhV~ 89 (142)
T PF10673_consen 72 RLNDWCEELKESGFKHVF 89 (142)
T ss_pred HHHHHHHHHHhcCCcEEE
Confidence 566666666666665444
No 336
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=38.67 E-value=1.2e+02 Score=20.86 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=14.0
Q ss_pred cEEEEEcCCCcEEEEEe
Q 028030 180 RQTYILDKNGVVQLIYN 196 (215)
Q Consensus 180 ~~~~lid~~G~v~~~~~ 196 (215)
+..++.|++|..+....
T Consensus 104 ~~~~f~DPdG~~iEl~~ 120 (123)
T cd08351 104 RGVYFLDPDGHLLEIIT 120 (123)
T ss_pred eEEEEECCCCCEEEEEe
Confidence 38999999999987653
No 337
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=38.07 E-value=1.2e+02 Score=28.54 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCcEEEEEeC---CCHHHHHHHHHH
Q 028030 115 CAFRDSYEKFKKAGAEVIGISG---DDSSSHKAFAKK 148 (215)
Q Consensus 115 ~~l~~l~~~~~~~~v~vv~vs~---d~~~~~~~~~~~ 148 (215)
..+++||-+.++.|.+++.++. .-+...+.|++.
T Consensus 561 ~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~n 597 (738)
T KOG2116|consen 561 TGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKN 597 (738)
T ss_pred hhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHH
Confidence 3668899999999999999985 344556666653
No 338
>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []. It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.
Probab=37.58 E-value=23 Score=21.82 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=19.0
Q ss_pred EeCCCHHHHHHHHHHcCCCeEEE
Q 028030 134 ISGDDSSSHKAFAKKYRLPYTLL 156 (215)
Q Consensus 134 vs~d~~~~~~~~~~~~~~~~~~~ 156 (215)
++.++++++++|.++..-+||--
T Consensus 15 ~~L~t~eeI~~W~eERrk~~PT~ 37 (56)
T PF10453_consen 15 IKLQTPEEIAKWIEERRKNYPTK 37 (56)
T ss_pred eecCCHHHHHHHHHHHHHcCCcH
Confidence 45589999999999888888754
No 339
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=37.54 E-value=71 Score=19.53 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=11.8
Q ss_pred CCCChhhHHHHHHHHHH
Q 028030 104 ADETPGCTKQACAFRDS 120 (215)
Q Consensus 104 a~~C~~C~~~~~~l~~l 120 (215)
..+|+.|.+..-.|...
T Consensus 6 ~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 6 SPTAPNPRRVRIFLAEK 22 (74)
T ss_pred CCCCcchHHHHHHHHHc
Confidence 67799998776555443
No 340
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=37.01 E-value=97 Score=20.89 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=32.4
Q ss_pred CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030 95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD 137 (215)
Q Consensus 95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d 137 (215)
.++.|.|.|..-|+.-..-..+|.-|+..+.+.|.+++..-++
T Consensus 5 a~V~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~ 47 (88)
T PF15092_consen 5 AYVTIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIE 47 (88)
T ss_pred cEEEEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEec
Confidence 3566666666668776667778899999999999888887553
No 341
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=36.77 E-value=1.4e+02 Score=20.39 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=24.7
Q ss_pred Chhh------HHHHHHHHH-HHHHHHHcCcEEEEEeCCCH---HHHHHHHHH
Q 028030 107 TPGC------TKQACAFRD-SYEKFKKAGAEVIGISGDDS---SSHKAFAKK 148 (215)
Q Consensus 107 C~~C------~~~~~~l~~-l~~~~~~~~v~vv~vs~d~~---~~~~~~~~~ 148 (215)
|..| +..+.=|+. +.++|+++.+.+..|..+.+ ++.++|.++
T Consensus 9 CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~ 60 (93)
T PF07315_consen 9 CASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAER 60 (93)
T ss_dssp -GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHH
T ss_pred chhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHH
Confidence 7877 344444544 66788888899999987544 344556554
No 342
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=36.60 E-value=1.3e+02 Score=20.21 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=15.3
Q ss_pred EEEEEcCCCcEEEEEeCC
Q 028030 181 QTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 181 ~~~lid~~G~v~~~~~g~ 198 (215)
..++.|++|..+..+.|.
T Consensus 93 ~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 93 GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred EEEEECCCCCEEEEecCC
Confidence 588999999999888764
No 343
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=36.58 E-value=99 Score=24.90 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCCH---HHHHHHHHHcCCC
Q 028030 113 QACAFRDSYEKFKKAGAEVIGISGDDS---SSHKAFAKKYRLP 152 (215)
Q Consensus 113 ~~~~l~~l~~~~~~~~v~vv~vs~d~~---~~~~~~~~~~~~~ 152 (215)
-+|...++++.++++|+.|+.++.-++ +...+++.+.|++
T Consensus 121 aip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~ 163 (229)
T TIGR01675 121 ALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFT 163 (229)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCC
Confidence 456677788888889999999998554 4478999999988
No 344
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=36.34 E-value=1.5e+02 Score=20.89 Aligned_cols=42 Identities=17% Similarity=0.349 Sum_probs=31.3
Q ss_pred HHHHHHHHcCcEEEEEeCCCHHHHHHHH---HHcCCCeEEEEcCC
Q 028030 119 DSYEKFKKAGAEVIGISGDDSSSHKAFA---KKYRLPYTLLSDEG 160 (215)
Q Consensus 119 ~l~~~~~~~~v~vv~vs~d~~~~~~~~~---~~~~~~~~~~~d~~ 160 (215)
+..+.+...|...|.+.+++++++.+.. +..++++.++.|.+
T Consensus 37 ~~~~~W~~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG 81 (113)
T PRK04322 37 EWLEEWLNEGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAG 81 (113)
T ss_pred HHHHHHHHCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4556677789999999998887665554 46788888888754
No 345
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=36.29 E-value=86 Score=18.53 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=13.9
Q ss_pred EEEEcCCCcEEEEEeCC
Q 028030 182 TYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 182 ~~lid~~G~v~~~~~g~ 198 (215)
.|.|++||+|.....|-
T Consensus 2 ~~~I~~dG~V~~~v~G~ 18 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGF 18 (48)
T ss_pred EEEECCCcEEEEEEEec
Confidence 36789999999887773
No 346
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.93 E-value=1.8e+02 Score=25.77 Aligned_cols=93 Identities=28% Similarity=0.260 Sum_probs=55.5
Q ss_pred ecCCcCCCcEEEEEEcCCC----ChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH-----HHHHHHHHHcCCCeEEEEc
Q 028030 88 SLSKFKGKPVVVYFYPADE----TPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS-----SSHKAFAKKYRLPYTLLSD 158 (215)
Q Consensus 88 ~l~~~~gk~~ll~f~~a~~----C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~-----~~~~~~~~~~~~~~~~~~d 158 (215)
.+.--++|+.||.|. +-. ...|. +++-.|+++|..+.-|..|+- ..++++..+-+++|..-++
T Consensus 93 ~~~~~K~kpsVimfV-GLqG~GKTTtc~-------KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyt 164 (483)
T KOG0780|consen 93 ALQPKKGKPSVIMFV-GLQGSGKTTTCT-------KLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYT 164 (483)
T ss_pred ccccccCCCcEEEEE-eccCCCcceeHH-------HHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEeccc
Confidence 344347899999998 433 22344 345567778999888888752 4677788888888765543
Q ss_pred C-ChhHHHHhCCCccCCCCCCccEEEEEcCCCcE
Q 028030 159 E-GNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191 (215)
Q Consensus 159 ~-~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v 191 (215)
+ +......-|+..-- --+..++++|-.|+.
T Consensus 165 e~dpv~ia~egv~~fK---ke~fdvIIvDTSGRh 195 (483)
T KOG0780|consen 165 EADPVKIASEGVDRFK---KENFDVIIVDTSGRH 195 (483)
T ss_pred ccchHHHHHHHHHHHH---hcCCcEEEEeCCCch
Confidence 3 22222223332100 012357888888875
No 347
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=35.88 E-value=48 Score=20.99 Aligned_cols=11 Identities=9% Similarity=-0.076 Sum_probs=6.8
Q ss_pred CCCChhhHHHH
Q 028030 104 ADETPGCTKQA 114 (215)
Q Consensus 104 a~~C~~C~~~~ 114 (215)
...|+.|++..
T Consensus 6 ~~~s~~s~rv~ 16 (73)
T cd03052 6 WTQSFSSQKVR 16 (73)
T ss_pred CCCCccHHHHH
Confidence 55677776554
No 348
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=35.64 E-value=41 Score=24.48 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=29.7
Q ss_pred HHHHHHcCcEEEEEeCC-CHHHHHHHHHHcCCCeEEEEcCC
Q 028030 121 YEKFKKAGAEVIGISGD-DSSSHKAFAKKYRLPYTLLSDEG 160 (215)
Q Consensus 121 ~~~~~~~~v~vv~vs~d-~~~~~~~~~~~~~~~~~~~~d~~ 160 (215)
.+++++ .+++++++.. +.+.+.+-+++++.++-.+.|+.
T Consensus 18 i~~~~d-~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~ 57 (129)
T PF02670_consen 18 IRKHPD-KFEVVALSAGSNIEKLAEQAREFKPKYVVIADEE 57 (129)
T ss_dssp HHHCTT-TEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHH
T ss_pred HHhCCC-ceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHH
Confidence 344455 4999999875 56888999999999999988764
No 349
>PLN02382 probable sucrose-phosphatase
Probab=35.56 E-value=3.1e+02 Score=24.10 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 111 TKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 111 ~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
....+.+..+.+++.++|+.++..+.-.....+++++++++.
T Consensus 28 ~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~ 69 (413)
T PLN02382 28 NLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLL 69 (413)
T ss_pred chhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCC
Confidence 345567777766777789999988888888888888776655
No 350
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=35.51 E-value=1.2e+02 Score=20.51 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=15.1
Q ss_pred EEEEEcCCCcEEEEEeCC
Q 028030 181 QTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 181 ~~~lid~~G~v~~~~~g~ 198 (215)
..++.|++|..+..+.+.
T Consensus 101 ~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 101 GFRFFDPDGRLIEFSADV 118 (120)
T ss_pred EEEEECCCCCEEEEEecc
Confidence 678999999999877663
No 351
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=35.37 E-value=2.6e+02 Score=24.42 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=42.6
Q ss_pred CcEEEEEeCCCH----HHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCc
Q 028030 128 GAEVIGISGDDS----SSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEK 203 (215)
Q Consensus 128 ~v~vv~vs~d~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~ 203 (215)
+..+||+..++. +..++-+++++.++.+..+-+.. -||.. .- .+++|+++|.. ..+...-.+
T Consensus 315 ~~~lvgF~aEt~~~l~~~A~~kl~~k~~D~ivaN~i~~~---~fg~~------~n--~~~li~~~~~~---~~~~~~K~~ 380 (390)
T TIGR00521 315 HQVIVGFKAETNDDLIKYAKEKLKKKNLDMIVANDVSQR---GFGSD------EN--EVYIFSKHGHK---ELPLMSKLE 380 (390)
T ss_pred CcEEEEEEcCCCcHHHHHHHHHHHHcCCCEEEEccCCcc---ccCCC------Cc--EEEEEECCCeE---EeCCCCHHH
Confidence 356788876542 45555666788898887765432 24333 23 79999999853 222222334
Q ss_pred cHHHHHHHHh
Q 028030 204 HIDETLKFLQ 213 (215)
Q Consensus 204 ~~~~il~~l~ 213 (215)
...+|++.++
T Consensus 381 iA~~i~~~~~ 390 (390)
T TIGR00521 381 VAERILDEIK 390 (390)
T ss_pred HHHHHHHHhC
Confidence 4566666553
No 352
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=35.02 E-value=1.8e+02 Score=25.52 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=42.3
Q ss_pred EEEEEeCCCH---HHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHH
Q 028030 130 EVIGISGDDS---SSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206 (215)
Q Consensus 130 ~vv~vs~d~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~ 206 (215)
.+||+..++. +..++-+++.+.++.+..|-. -..-||-. .. .+++|+++|.+...-.+ .-.+...
T Consensus 320 ~~VGFaaEt~~~~~~A~~kl~~k~~D~ivaN~i~--~~~~fg~~------~n--~~~ii~~~~~~~~~~~~--~K~~iA~ 387 (399)
T PRK05579 320 FVVGFAAETGDVLEYARAKLKRKGLDLIVANDVS--AGGGFGSD------DN--EVTLIWSDGGEVKLPLM--SKLELAR 387 (399)
T ss_pred EEEEEccCCchHHHHHHHHHHHcCCeEEEEecCC--cCCCcCCC------ce--EEEEEECCCcEEEcCCC--CHHHHHH
Confidence 5888877554 455666677888888887643 11123333 23 78999999975433222 2234455
Q ss_pred HHHHHH
Q 028030 207 ETLKFL 212 (215)
Q Consensus 207 ~il~~l 212 (215)
++++.+
T Consensus 388 ~i~~~i 393 (399)
T PRK05579 388 RLLDEI 393 (399)
T ss_pred HHHHHH
Confidence 566554
No 353
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=34.93 E-value=1.3e+02 Score=22.84 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 113 QACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 113 ~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
..+...++.+.++++|..++-+|......++.+++.++++
T Consensus 88 ~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~ 127 (202)
T TIGR01490 88 LYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGID 127 (202)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc
Confidence 3445566666677778888888877777777788877775
No 354
>PHA00649 hypothetical protein
Probab=34.86 E-value=23 Score=22.72 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=18.0
Q ss_pred CcEEEEEeCCCHHHHHHHHHHc
Q 028030 128 GAEVIGISGDDSSSHKAFAKKY 149 (215)
Q Consensus 128 ~v~vv~vs~d~~~~~~~~~~~~ 149 (215)
-+.+++|..|+++++++|.++.
T Consensus 22 ~~~~LGVD~~~P~~VEEFr~D~ 43 (83)
T PHA00649 22 VFAILGVDVDVPEQVEEFREDL 43 (83)
T ss_pred HHHHHcCCCCCHHHHHHHHHHH
Confidence 4778899999999988887753
No 355
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=34.69 E-value=2.6e+02 Score=23.00 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=45.6
Q ss_pred CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-C-cEEEEEeCCC-----HHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030 95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-G-AEVIGISGDD-----SSSHKAFAKKYRLPYTLLSDEGNKVRKEW 167 (215)
Q Consensus 95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~-v~vv~vs~d~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (215)
+..++.|...++++= .... .++...+..+ | ..|..|+.|+ .+.+..|.+..++++....++ .++....
T Consensus 193 ~~~vi~~vGptGvGK-TTt~---~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~-~~l~~~l 267 (282)
T TIGR03499 193 QGGVIALVGPTGVGK-TTTL---AKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDP-KELRKAL 267 (282)
T ss_pred CCeEEEEECCCCCCH-HHHH---HHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCH-HHHHHHH
Confidence 444555552444442 1222 3444444433 3 6777788886 467778888888887665443 3444443
Q ss_pred CCCccCCCCCCccEEEEEcCCC
Q 028030 168 GVPADFFGSLPGRQTYILDKNG 189 (215)
Q Consensus 168 g~~~~~~g~~p~~~~~lid~~G 189 (215)
.-.. -. .++|||--|
T Consensus 268 ~~~~-----~~--d~vliDt~G 282 (282)
T TIGR03499 268 DRLR-----DK--DLILIDTAG 282 (282)
T ss_pred HHcc-----CC--CEEEEeCCC
Confidence 3221 12 588888654
No 356
>PLN00139 hypothetical protein; Provisional
Probab=34.64 E-value=87 Score=26.51 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=36.5
Q ss_pred HHHHHHH----HHHHHHHHHcCcEEEEE-------------------eCCCHHHHHHHHHHcCCCeEEEEcC
Q 028030 111 TKQACAF----RDSYEKFKKAGAEVIGI-------------------SGDDSSSHKAFAKKYRLPYTLLSDE 159 (215)
Q Consensus 111 ~~~~~~l----~~l~~~~~~~~v~vv~v-------------------s~d~~~~~~~~~~~~~~~~~~~~d~ 159 (215)
...+..| .++.+++.++|+..+-. .+++.+++++++++.|+.|....|.
T Consensus 149 ~~v~~~L~~~~p~~~e~l~~~gv~y~r~~~~~~~~~~~~~~sWq~~F~t~d~~eve~~~~~~g~~~eW~~dg 220 (320)
T PLN00139 149 FRVTERMLEEFPEAVEEVEAKGLKYTFTALSKNDTSSMRGRGWEDAFGTSDKAEAERRAKALGMDMEWLPNG 220 (320)
T ss_pred HHHHHHhhhhCHHHHHHHHhcCceEEEeccccccccccccchHHHHhCCCCHHHHHHHHHHcCCeEEEcCCC
Confidence 4445555 67888888888877551 1468899999999999998876654
No 357
>PHA02762 hypothetical protein; Provisional
Probab=34.46 E-value=88 Score=18.97 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=21.0
Q ss_pred EEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030 181 QTYILDKNGVVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 181 ~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l 212 (215)
.++=||.+|++.+...-+ .+.++.+-++.+
T Consensus 30 vtigide~g~iayisiep--~dkdl~~~i~ri 59 (62)
T PHA02762 30 VTIGIDENDKISYISIEP--LDKDLKEGIKRI 59 (62)
T ss_pred EEEeECCCCcEEEEEecc--cchHHHHhhhhe
Confidence 678899999998876653 355566555544
No 358
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=34.40 E-value=1.5e+02 Score=20.88 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030 105 DETPGCTKQACAFRDSYEKFKKAGAEVIGISGD 137 (215)
Q Consensus 105 ~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d 137 (215)
+.|+.-......++.++++| |+++++++.|
T Consensus 24 N~~~~~~~~~a~lr~W~er~---ga~i~~i~~d 53 (111)
T PF14062_consen 24 NYCPDTADIIAVLRYWEERY---GAEIVGIGFD 53 (111)
T ss_pred CCCCCHHHHHHHHHHHHHHh---CEEEEEEECC
Confidence 34666667777777776665 4788888765
No 359
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=34.34 E-value=1.3e+02 Score=22.96 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=54.5
Q ss_pred CCCCCCeEEeCCCCCeeecCC--c--CC-CcEEEEEEcCCCChhhH-HHHHHHHHHHHHHHHcCc--EEEEEeCC-----
Q 028030 71 GQAPPSFTLKDQEGRNVSLSK--F--KG-KPVVVYFYPADETPGCT-KQACAFRDSYEKFKKAGA--EVIGISGD----- 137 (215)
Q Consensus 71 g~~~P~f~l~~~~g~~~~l~~--~--~g-k~~ll~f~~a~~C~~C~-~~~~~l~~l~~~~~~~~v--~vv~vs~d----- 137 (215)
.--.|++.+++...= +++. + .| |.+++++= .+-+++-. ..-+.+.++.+++++.+. .|+-||-.
T Consensus 15 ~l~~P~l~V~si~~I--~~~~~~Lk~~Gik~li~DkD-NTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~ 91 (168)
T PF09419_consen 15 SLLLPHLYVPSIRDI--DFEANHLKKKGIKALIFDKD-NTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSD 91 (168)
T ss_pred cccCCCEEcCChhhC--CcchhhhhhcCceEEEEcCC-CCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCccc
Confidence 345667776654432 2333 3 34 67888776 44454443 444566666777776544 36666643
Q ss_pred --CHHHHHHHHHHcCCCeEEE-E-cCC--hhHHHHhCCC
Q 028030 138 --DSSSHKAFAKKYRLPYTLL-S-DEG--NKVRKEWGVP 170 (215)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~-~-d~~--~~~~~~~g~~ 170 (215)
+.++++.+.+..++++..- . .+. .++.+.|+..
T Consensus 92 d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 92 DPDGERAEALEKALGIPVLRHRAKKPGCFREILKYFKCQ 130 (168)
T ss_pred CccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHHhhc
Confidence 3567777888888774332 1 332 2455555543
No 360
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=34.15 E-value=1.9e+02 Score=22.46 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCC-CeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEE
Q 028030 116 AFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRL-PYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194 (215)
Q Consensus 116 ~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~ 194 (215)
-++++.......+.-.+.|+.+..+.+..|+.++.- .|.+-.|+. ++.....|..++|...-.
T Consensus 119 Llr~l~~~~~~~~~~tL~~hP~~~~~V~~~L~~~~~~~w~l~~D~s----------------l~~~~l~L~t~~G~~~l~ 182 (191)
T PF06188_consen 119 LLRQLLASQRQESEATLRCHPDQLEEVAAWLAEHPALHWQLQADES----------------LAPDQLKLETANGEFRLD 182 (191)
T ss_pred HHHHHHHhcccccceEEEECHHHHHHHHHHHHhCCCcceeeccCCC----------------CCCCceEEEcCCCcEEEC
Confidence 445555555555677788888899999999988763 367777765 555588899999987654
Q ss_pred E
Q 028030 195 Y 195 (215)
Q Consensus 195 ~ 195 (215)
|
T Consensus 183 w 183 (191)
T PF06188_consen 183 W 183 (191)
T ss_pred H
Confidence 4
No 361
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=34.12 E-value=1e+02 Score=20.27 Aligned_cols=16 Identities=6% Similarity=0.009 Sum_probs=10.1
Q ss_pred CCCChhhHHHHHHHHH
Q 028030 104 ADETPGCTKQACAFRD 119 (215)
Q Consensus 104 a~~C~~C~~~~~~l~~ 119 (215)
...|+.|.+..-.|..
T Consensus 24 ~~~sp~~~kv~~~L~~ 39 (89)
T cd03055 24 MRFCPYAQRARLVLAA 39 (89)
T ss_pred CCCCchHHHHHHHHHH
Confidence 5568999866444433
No 362
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=34.11 E-value=1.7e+02 Score=25.91 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcE
Q 028030 141 SHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191 (215)
Q Consensus 141 ~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v 191 (215)
.+.+..++.+.++-+..|++++ +..++|++|++
T Consensus 217 ~l~~~v~~~~adlGia~DgD~D------------------R~~ivd~~G~~ 249 (445)
T PRK09542 217 DLQAFVRETGADIGLAFDGDAD------------------RCFVVDERGQP 249 (445)
T ss_pred HHHHHHHHcCCCEEEEECCCCc------------------eEEEECCCCCC
Confidence 4555566777777777776633 55667777766
No 363
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=33.84 E-value=2.6e+02 Score=23.83 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCcEEEEEe-------CCCHHHHHHHHHHcCCCeEE--EEcCChhHHHHhC---CCccC------CCCCC
Q 028030 117 FRDSYEKFKKAGAEVIGIS-------GDDSSSHKAFAKKYRLPYTL--LSDEGNKVRKEWG---VPADF------FGSLP 178 (215)
Q Consensus 117 l~~l~~~~~~~~v~vv~vs-------~d~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~g---~~~~~------~g~~p 178 (215)
|.+..++|.+.|+.++..+ .||.....+++++.+++.|- ..+.-.++..++. ..+.. .| +-
T Consensus 79 l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~~~~~~CvKP~~g-~g 157 (329)
T PF15632_consen 79 LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTADELKAAYEELRFPGQPLCVKPAVG-IG 157 (329)
T ss_pred HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCCCCceEEEecccC-CC
Confidence 7888888999999999943 25667778888888887542 2333344444443 32110 01 11
Q ss_pred ccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 179 GRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 179 ~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
+.-+.+||.+..-...+.......-..++++..++.
T Consensus 158 g~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~ 193 (329)
T PF15632_consen 158 GRGFRVLDESRDELDALFEPDSRRISLDELLAALQR 193 (329)
T ss_pred cceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhc
Confidence 235677775554433333333444556777777664
No 364
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=33.72 E-value=1.4e+02 Score=19.60 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=10.0
Q ss_pred EEEEEcCCCcEEEE
Q 028030 181 QTYILDKNGVVQLI 194 (215)
Q Consensus 181 ~~~lid~~G~v~~~ 194 (215)
..++.|++|.++..
T Consensus 94 ~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 94 SFYFIDPDGNRIEF 107 (108)
T ss_dssp EEEEE-TTS-EEEE
T ss_pred EEEEECCCCCEEEe
Confidence 79999999998754
No 365
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=33.47 E-value=1.1e+02 Score=25.64 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030 113 QACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK 148 (215)
Q Consensus 113 ~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~ 148 (215)
.++.+.+..++++++|+.+.-+|-++.+.+.+.++.
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~ 67 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFER 67 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHh
Confidence 377888888888989988888888888888888887
No 366
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=33.34 E-value=2.5e+02 Score=24.64 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=7.6
Q ss_pred EEEEEcCCCcEE
Q 028030 181 QTYILDKNGVVQ 192 (215)
Q Consensus 181 ~~~lid~~G~v~ 192 (215)
+..++|++|+++
T Consensus 241 R~~~vd~~G~~i 252 (434)
T cd05802 241 RVIAVDEKGNIV 252 (434)
T ss_pred eEEEECCCCCEe
Confidence 456677777654
No 367
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=33.33 E-value=1.9e+02 Score=22.31 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=26.0
Q ss_pred HHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEE
Q 028030 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTL 155 (215)
Q Consensus 122 ~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~ 155 (215)
++++++|+.++..+.-....+.++++.++.+.++
T Consensus 25 ~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~ 58 (225)
T TIGR01482 25 RKAESVGIPVVLVTGNSVQFARALAKLIGTPDPV 58 (225)
T ss_pred HHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeE
Confidence 4456679999999988888888888888865333
No 368
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=33.09 E-value=1.1e+02 Score=19.67 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=10.6
Q ss_pred EEEEEcCCCcEEEE
Q 028030 181 QTYILDKNGVVQLI 194 (215)
Q Consensus 181 ~~~lid~~G~v~~~ 194 (215)
-.+.||++|+|...
T Consensus 30 V~i~i~~dG~v~~~ 43 (85)
T PF13103_consen 30 VRITIDPDGRVISV 43 (85)
T ss_dssp EEEEE-TTSBEEEE
T ss_pred EEEEECCCCCEEEE
Confidence 67889999999654
No 369
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=32.89 E-value=44 Score=24.66 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChhhH-------HHHHHHHHHHHHHHHcCcEEE
Q 028030 97 VVVYFYPADETPGCT-------KQACAFRDSYEKFKKAGAEVI 132 (215)
Q Consensus 97 ~ll~f~~a~~C~~C~-------~~~~~l~~l~~~~~~~~v~vv 132 (215)
.=|.|- ++.|-.|. ..-.+++++.++|...++.||
T Consensus 32 aevvfs-~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVl 73 (154)
T PRK13265 32 AEVVFS-STECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVI 73 (154)
T ss_pred ceEEEE-eeeEEEeecccccchHHHHHHHHHHHhcCCccEEEE
Confidence 345566 77888784 334456666777766554444
No 370
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=32.76 E-value=46 Score=28.62 Aligned_cols=79 Identities=10% Similarity=0.188 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEE------EcCChhHHHHhCCCccCCCCCCcc
Q 028030 107 TPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLL------SDEGNKVRKEWGVPADFFGSLPGR 180 (215)
Q Consensus 107 C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~------~d~~~~~~~~~g~~~~~~g~~p~~ 180 (215)
||.|......+..+..+..++ +.....++.+. ..+...-.+.+|+.+ -+
T Consensus 271 CPgCgR~~~D~~~la~~vee~------------------~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG-----~~-- 325 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQR------------------LEHIKMPLKVAVMGCVVNGPGEAKEADIGIAG-----GN-- 325 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHH------------------hcCCCCCcEEEEeCCCCCCCCchhhCcEeEec-----CC--
Q ss_pred EEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 181 QTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 181 ~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
..+++=.+|+++..... ++.++++++.+++
T Consensus 326 ~~~~vf~~Gk~v~kv~~----~~~~~~l~~~i~~ 355 (360)
T PRK00366 326 PKGPVFVDGEKIKTLPE----ENIVEELEAEIEA 355 (360)
T ss_pred CceEEEECCEEeeeeCh----HhHHHHHHHHHHH
No 371
>PRK05370 argininosuccinate synthase; Validated
Probab=32.73 E-value=2e+02 Score=25.73 Aligned_cols=70 Identities=19% Similarity=0.139 Sum_probs=44.4
Q ss_pred ecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-------CHHHHHHHHHHcCCCeEEEEcC
Q 028030 88 SLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-------DSSSHKAFAKKYRLPYTLLSDE 159 (215)
Q Consensus 88 ~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-------~~~~~~~~~~~~~~~~~~~~d~ 159 (215)
.+.++ +|+.|+|-|-.+-....|..-+ +++|.+|+++..| +-+.+++-+...|..=.++.|-
T Consensus 4 ~~~~l~~~~KVvLAYSGGLDTSv~l~wL----------~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDl 73 (447)
T PRK05370 4 ILKHLPVGQRVGIAFSGGLDTSAALLWM----------RQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDC 73 (447)
T ss_pred hhhhCCCCCEEEEEecCCchHHHHHHHH----------HhcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEecc
Confidence 35677 7888888887445555565332 2236888887653 2246666667778765666777
Q ss_pred ChhHHHHh
Q 028030 160 GNKVRKEW 167 (215)
Q Consensus 160 ~~~~~~~~ 167 (215)
..++.+.|
T Consensus 74 r~eF~e~~ 81 (447)
T PRK05370 74 RAQLVAEG 81 (447)
T ss_pred HHHHHHHH
Confidence 76666655
No 372
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=32.63 E-value=2e+02 Score=21.09 Aligned_cols=44 Identities=9% Similarity=0.107 Sum_probs=28.9
Q ss_pred HHHHhCCCccCCCCCCccEEEEEcCCC---cEEEEEeCCCCCCccHHHHHHHHh
Q 028030 163 VRKEWGVPADFFGSLPGRQTYILDKNG---VVQLIYNNQFQPEKHIDETLKFLQ 213 (215)
Q Consensus 163 ~~~~~g~~~~~~g~~p~~~~~lid~~G---~v~~~~~g~~~~~~~~~~il~~l~ 213 (215)
..+.+.... +| ...+|-+.. .|+.+..|...+++.++.+...++
T Consensus 88 ~~~~~~~~~-----fP--~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 88 TIRNIKTDQ-----LP--AILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred HHHhcCcCC-----CC--eEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 344445554 88 777776554 577778888777777777766654
No 373
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=32.60 E-value=2.7e+02 Score=24.60 Aligned_cols=12 Identities=17% Similarity=0.337 Sum_probs=7.6
Q ss_pred EEEEEcCCCcEE
Q 028030 181 QTYILDKNGVVQ 192 (215)
Q Consensus 181 ~~~lid~~G~v~ 192 (215)
+..+||.+|+++
T Consensus 243 Rl~~vd~~G~~i 254 (443)
T PRK10887 243 RVIMVDHLGNLV 254 (443)
T ss_pred eEEEECCCCcEe
Confidence 456667777654
No 374
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=32.56 E-value=1.8e+02 Score=20.46 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=36.8
Q ss_pred cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030 127 AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY 195 (215)
Q Consensus 127 ~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~ 195 (215)
.|+.-+++.+++-++..+.+++.|+.+.- ... . +. .+ .. ..|+-||+|.++...
T Consensus 86 ~g~~hia~~v~d~d~~~~~l~~~G~~~~~--~~~-~----~~-~~-----~r--~~~~~DPdG~~iEl~ 139 (142)
T cd08353 86 LGLRRVMFAVDDIDARVARLRKHGAELVG--EVV-Q----YE-NS-----YR--LCYIRGPEGILIELA 139 (142)
T ss_pred CCceEEEEEeCCHHHHHHHHHHCCCceeC--Cce-e----cC-CC-----eE--EEEEECCCCCEEEee
Confidence 36778888899998888888888877532 110 0 00 11 22 678999999987654
No 375
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=32.37 E-value=61 Score=23.90 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=25.8
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChh
Q 028030 129 AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNK 162 (215)
Q Consensus 129 v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~ 162 (215)
+.+++|..+|.++-.+|+.+.=+++.++.|++++
T Consensus 28 lvLvGV~~~Dt~~~a~~l~~Ki~~lRiF~D~~gK 61 (145)
T COG1490 28 LVLVGVTHDDTEEDADYLAEKILNLRIFEDEEGK 61 (145)
T ss_pred EEEEeecCCCCHHHHHHHHHHHhceEeecCcccc
Confidence 4567888877766677777777888899888765
No 376
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=32.28 E-value=1.6e+02 Score=25.75 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEE
Q 028030 113 QACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLL 156 (215)
Q Consensus 113 ~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~ 156 (215)
.+..|++|.+++++.|+.++....+..+.+.+.++++++.-.+.
T Consensus 59 l~esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~~V~~ 102 (429)
T TIGR02765 59 LLESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRTVFL 102 (429)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCCEEEE
Confidence 45688889999999899988888777777777887777664443
No 377
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=32.24 E-value=1.8e+02 Score=20.37 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=34.5
Q ss_pred HHHHHcCcEEEEEeCCCH----HHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 122 EKFKKAGAEVIGISGDDS----SSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 122 ~~~~~~~v~vv~vs~d~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
+.++.....+|.|+.|-+ +.+..+++.+++++..+.....++..+.|..
T Consensus 35 kalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~Gk~ 87 (108)
T PTZ00106 35 KALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTACGRH 87 (108)
T ss_pred HHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHhCCc
Confidence 333434577777777643 4667778888888866656778899999876
No 378
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=32.20 E-value=1.3e+02 Score=18.65 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHH--------cCcEEEEEeCCCHHHHHHHHHH
Q 028030 110 CTKQACAFRDSYEKFKK--------AGAEVIGISGDDSSSHKAFAKK 148 (215)
Q Consensus 110 C~~~~~~l~~l~~~~~~--------~~v~vv~vs~d~~~~~~~~~~~ 148 (215)
-..++..|.++.++|.. +++.+.+|..++.+.+.+-+++
T Consensus 22 ~~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 22 SAEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EHHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 46788999999999873 4688888888887777666554
No 379
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=32.14 E-value=1.7e+02 Score=23.07 Aligned_cols=39 Identities=13% Similarity=0.342 Sum_probs=30.1
Q ss_pred HHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCC
Q 028030 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEG 160 (215)
Q Consensus 122 ~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~ 160 (215)
++++++|+.++.++.-+...+..++++.++..+++.-++
T Consensus 25 ~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~~~I~~NG 63 (225)
T TIGR02461 25 EELKDLGFPIVFVSSKTRAEQEYYREELGVEPPFIVENG 63 (225)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCcEEEcCC
Confidence 445667999999999999999999999997655555333
No 380
>PHA02552 4 head completion protein; Provisional
Probab=31.98 E-value=2.2e+02 Score=21.35 Aligned_cols=28 Identities=14% Similarity=0.466 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 141 SHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 141 ~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
+.++++++.|+.|.++.+ .++.+.||..
T Consensus 122 Aa~~~a~~~Gw~F~iiTE--~~ir~~~~~~ 149 (151)
T PHA02552 122 AARALCEKKGWKFKIITE--DELKKVFGWK 149 (151)
T ss_pred HHHHHHHHcCCEEEEEEH--HHhhhhhCcC
Confidence 357888999999999884 5666677664
No 381
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=31.88 E-value=72 Score=23.05 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 116 AFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 116 ~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
.+.++..+++++|+.++.+|..+.+.+...++.+++.
T Consensus 81 ~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~ 117 (176)
T PF13419_consen 81 GVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD 117 (176)
T ss_dssp THHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG
T ss_pred hhhhhhhhcccccceeEEeecCCcccccccccccccc
Confidence 4455566667778999999988888888888888866
No 382
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=31.78 E-value=1.7e+02 Score=19.99 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=38.2
Q ss_pred CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCC
Q 028030 95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRL 151 (215)
Q Consensus 95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~ 151 (215)
+.+||+| ...+..-..-+..|.++.++++.+|+.++.+.. ...+++.++..++
T Consensus 49 ~~vIlD~--s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~--~~~v~~~l~~~~~ 101 (117)
T PF01740_consen 49 KNVILDM--SGVSFIDSSGIQALVDIIKELRRRGVQLVLVGL--NPDVRRILERSGL 101 (117)
T ss_dssp SEEEEEE--TTESEESHHHHHHHHHHHHHHHHTTCEEEEESH--HHHHHHHHHHTTG
T ss_pred eEEEEEE--EeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHcCC
Confidence 5677777 455666677888999999999999999998876 3334444555444
No 383
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=31.52 E-value=61 Score=22.55 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=23.2
Q ss_pred EEEeCCCHHHHHHHHHHcCCCeEEEEcCC
Q 028030 132 IGISGDDSSSHKAFAKKYRLPYTLLSDEG 160 (215)
Q Consensus 132 v~vs~d~~~~~~~~~~~~~~~~~~~~d~~ 160 (215)
+.+..++.|+.-.|++++|++|.+.....
T Consensus 51 v~l~F~skE~Ai~yaer~G~~Y~V~~p~~ 79 (101)
T PF04800_consen 51 VRLKFDSKEDAIAYAERNGWDYEVEEPKK 79 (101)
T ss_dssp CEEEESSHHHHHHHHHHCT-EEEEE-STT
T ss_pred eEeeeCCHHHHHHHHHHcCCeEEEeCCCC
Confidence 66778999999999999999999876543
No 384
>PRK14974 cell division protein FtsY; Provisional
Probab=31.52 E-value=3.3e+02 Score=23.25 Aligned_cols=57 Identities=26% Similarity=0.327 Sum_probs=34.2
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-----HHHHHHHHHHcCCCeE
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-----SSSHKAFAKKYRLPYT 154 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-----~~~~~~~~~~~~~~~~ 154 (215)
+++.++.|..-++++= .. .+.+++..+.+.|..++.+..|. .+.++.|.+..++++.
T Consensus 138 ~~~~vi~~~G~~GvGK-TT---tiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~ 199 (336)
T PRK14974 138 GKPVVIVFVGVNGTGK-TT---TIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVI 199 (336)
T ss_pred CCCeEEEEEcCCCCCH-HH---HHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCcee
Confidence 4567777773454441 22 33444445566677777787774 2456777788777654
No 385
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=31.46 E-value=1.2e+02 Score=22.34 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=8.0
Q ss_pred HHHHHHHHcCCCeEEEEc
Q 028030 141 SHKAFAKKYRLPYTLLSD 158 (215)
Q Consensus 141 ~~~~~~~~~~~~~~~~~d 158 (215)
++-+++++.+..+.+++.
T Consensus 80 ~~l~~l~~~g~~~~ivS~ 97 (177)
T TIGR01488 80 ELISWLKERGIDTVIVSG 97 (177)
T ss_pred HHHHHHHHCCCEEEEECC
Confidence 333344444444444443
No 386
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.35 E-value=36 Score=27.13 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHH
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYE 122 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~ 122 (215)
.+...+.|. ...|++|......+....+
T Consensus 118 ~~~~~~~f~-~~~~~~~~~a~~~~~~~~~ 145 (244)
T COG1651 118 LVLREFPFL-DPACPYCRRAAQAARCAAD 145 (244)
T ss_pred eEEEEeecC-CCCcHHHHHHHHHHHHhcc
Confidence 345667777 8899999988888877665
No 387
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=31.30 E-value=2.8e+02 Score=22.34 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=37.4
Q ss_pred CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC----CHHHHHHHHHHcCC
Q 028030 95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD----DSSSHKAFAKKYRL 151 (215)
Q Consensus 95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d----~~~~~~~~~~~~~~ 151 (215)
|-.||.|. |.+-...-..|.++..++++.+|.+=-|+.. +.+....|+...+.
T Consensus 107 ~~riVvFv----GSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~ 163 (259)
T KOG2884|consen 107 KQRIVVFV----GSPIEESEKELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNG 163 (259)
T ss_pred ceEEEEEe----cCcchhhHHHHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcC
Confidence 46899999 5566666668999999999887665555542 34677778776555
No 388
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=30.98 E-value=2.1e+02 Score=21.75 Aligned_cols=78 Identities=21% Similarity=0.154 Sum_probs=44.2
Q ss_pred CCCCeEEeCCCCCeeecCCcCC-CcEEEEEEcCCCCh-------hhHHHHHHHHHHHHHHHHcCcEEEEEeC-----CC-
Q 028030 73 APPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETP-------GCTKQACAFRDSYEKFKKAGAEVIGISG-----DD- 138 (215)
Q Consensus 73 ~~P~f~l~~~~g~~~~l~~~~g-k~~ll~f~~a~~C~-------~C~~~~~~l~~l~~~~~~~~v~vv~vs~-----d~- 138 (215)
-+|..++++.+-=++...+++| |.++++= +.|- --..+++.+++....|.++++.++.=+. |.
T Consensus 21 ~~Ph~~vptf~~ip~~I~~~~~ikavVlDK---DNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d 97 (190)
T KOG2961|consen 21 VLPHVSVPTFRYIPWEILKRKGIKAVVLDK---DNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHD 97 (190)
T ss_pred eccccccCccccCCcchhhccCceEEEEcC---CCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCc
Confidence 3455555555545555555555 4444432 2221 2246888889998899887677665443 32
Q ss_pred HHHHHHHHHHcCCCe
Q 028030 139 SSSHKAFAKKYRLPY 153 (215)
Q Consensus 139 ~~~~~~~~~~~~~~~ 153 (215)
.+..+.+-++.|+++
T Consensus 98 ~s~Ak~le~k~gIpV 112 (190)
T KOG2961|consen 98 DSKAKALEAKIGIPV 112 (190)
T ss_pred hHHHHHHHHhhCCce
Confidence 344455556666663
No 389
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=30.92 E-value=2.9e+02 Score=24.35 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=6.4
Q ss_pred EEEEEcCCCcE
Q 028030 181 QTYILDKNGVV 191 (215)
Q Consensus 181 ~~~lid~~G~v 191 (215)
+.+++|++|++
T Consensus 245 R~~~vd~~G~~ 255 (448)
T PRK14316 245 RLIAVDENGNI 255 (448)
T ss_pred eEEEECCCCCE
Confidence 45556666654
No 390
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=30.91 E-value=1.2e+02 Score=24.69 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=39.6
Q ss_pred EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH---HHHHHHHHHcCCCeEEEEcC
Q 028030 97 VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS---SSHKAFAKKYRLPYTLLSDE 159 (215)
Q Consensus 97 ~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~---~~~~~~~~~~~~~~~~~~d~ 159 (215)
+|| |-+.+|+- ---++.+..+|.++|+++|-|.-++- ..+-+.++..+..|.++.|.
T Consensus 55 vLL--~G~rGtGK----SSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DD 114 (249)
T PF05673_consen 55 VLL--WGARGTGK----SSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDD 114 (249)
T ss_pred eEE--ecCCCCCH----HHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcCCCCEEEEecC
Confidence 444 54666663 23345577888889999999987654 55566666677889998874
No 391
>PRK09974 putative regulator PrlF; Provisional
Probab=30.76 E-value=2e+02 Score=20.41 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=33.9
Q ss_pred hhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030 161 NKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 161 ~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~ 214 (215)
.++.+.+|+..+ ..-.|.+.++|+|+-.-......++.+...|.+|++
T Consensus 24 k~IR~~Lgl~~G------dkI~f~i~~dG~V~i~~~~~~~~Dp~ig~FL~fLa~ 71 (111)
T PRK09974 24 APVRKALKLKKR------DSIHYEILPGGQVFICRLGDEEEDPVLGAFLDFLAA 71 (111)
T ss_pred HHHHHHcCCCCC------CEEEEEEeCCCEEEEEECCCCCCCchHHHHHHHHHH
Confidence 467888888742 224566778999987766655666778888887764
No 392
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=30.74 E-value=1.7e+02 Score=19.71 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=36.6
Q ss_pred CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030 128 GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 128 ~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g 197 (215)
++.-+++.+++.+++.++++..+..+.. ... .. .+ ....++-||+|..+..+.+
T Consensus 57 ~~~~~af~v~~~~~~~~~~~~~g~~~~~--~~~--------~~---~~---~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 57 RFVGAAFEAASRADLEKAAALPGASVID--DLE--------AP---GG---GKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred cccEEEEEECCHHHHHHHHHcCCCeeec--CCC--------CC---CC---ceEEEEECCCCCEEEEEec
Confidence 4666888899999998888877665321 110 00 01 1268999999999987766
No 393
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=30.66 E-value=1.7e+02 Score=22.75 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCcEEEEEeC----CCHHHHHHHHHHcC
Q 028030 115 CAFRDSYEKFKKAGAEVIGISG----DDSSSHKAFAKKYR 150 (215)
Q Consensus 115 ~~l~~l~~~~~~~~v~vv~vs~----d~~~~~~~~~~~~~ 150 (215)
..+.+..+++++.|+.+-.|+. +..+.++.|.+..+
T Consensus 123 ~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~ 162 (187)
T cd01452 123 KDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN 162 (187)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc
Confidence 3466777888888877776665 34567777777654
No 394
>PRK11478 putative lyase; Provisional
Probab=30.61 E-value=1.8e+02 Score=19.90 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=33.3
Q ss_pred CcEEEEEeCCCHHHHHHHHHHcCCCeEEE-EcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030 128 GAEVIGISGDDSSSHKAFAKKYRLPYTLL-SDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY 195 (215)
Q Consensus 128 ~v~vv~vs~d~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~ 195 (215)
|+.=+++.+++.++..+.+++.|+++... .+. . .| .. ..++.|++|.++..+
T Consensus 75 g~~hi~f~v~d~~~~~~~l~~~G~~~~~~~~~~----------~---~g-~~--~~~~~DPdG~~iEl~ 127 (129)
T PRK11478 75 GLRHLAFSVDDIDAAVAHLESHNVKCEAIRVDP----------Y---TQ-KR--FTFFNDPDGLPLELY 127 (129)
T ss_pred ceeEEEEEeCCHHHHHHHHHHcCCeeeccccCC----------C---CC-CE--EEEEECCCCCEEEEE
Confidence 56666777788777777888878774211 010 0 01 22 678899999987654
No 395
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=30.61 E-value=78 Score=24.43 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=14.7
Q ss_pred EEEEEcCCCcEEEEEeCC
Q 028030 181 QTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 181 ~~~lid~~G~v~~~~~g~ 198 (215)
.+|+++++|+|.+.....
T Consensus 37 NvyIis~kGkiLGy~~~~ 54 (177)
T PF06018_consen 37 NVYIISRKGKILGYSFID 54 (177)
T ss_dssp EEEEEETTSBEEEEE-SS
T ss_pred cEEEEeCCccEEEEeccC
Confidence 699999999999886553
No 396
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=30.50 E-value=1.4e+02 Score=24.70 Aligned_cols=54 Identities=15% Similarity=0.045 Sum_probs=32.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCC
Q 028030 107 TPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEG 160 (215)
Q Consensus 107 C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~ 160 (215)
.+.+..-...|-+..++..-+|+-+.-+..+..+.+.++++++++.+..+.-+.
T Consensus 104 Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPt 157 (265)
T COG0159 104 NPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPT 157 (265)
T ss_pred cHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 455555544443333333323444444556777889999999999977776544
No 397
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=30.35 E-value=28 Score=29.91 Aligned_cols=77 Identities=17% Similarity=0.277 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHc--------CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC-ccCCCCC
Q 028030 107 TPGCTKQACAFRDSYEKFKKA--------GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP-ADFFGSL 177 (215)
Q Consensus 107 C~~C~~~~~~l~~l~~~~~~~--------~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~-~~~~g~~ 177 (215)
||.|-+..-.+.++.++.+++ .+.|.|.-++.+-+ .-...||+. . -
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGE--------------------a~~AD~GiaGg-----g 325 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGE--------------------AKDADIGIAGG-----G 325 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHH--------------------CTTSSEEEE-E------
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCch--------------------hhhCceeeecC-----C
Q ss_pred CccEEEEEcCCCcEEEEE-eCCCCCCccHHHHHHHHhc
Q 028030 178 PGRQTYILDKNGVVQLIY-NNQFQPEKHIDETLKFLQS 214 (215)
Q Consensus 178 p~~~~~lid~~G~v~~~~-~g~~~~~~~~~~il~~l~~ 214 (215)
+ ...++=++|+++... .. ++.++++++.+++
T Consensus 326 ~--g~~~lf~~g~~v~k~~~e----e~~vd~L~~~I~~ 357 (359)
T PF04551_consen 326 K--GKGILFKKGEVVKKVIPE----EEIVDELIELIEE 357 (359)
T ss_dssp T--TCEEEECTTEEEEEE-CS----TCHHHHHHHHHHH
T ss_pred C--CeEEEEECCEEEEecCCH----HHHHHHHHHHHHh
No 398
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=30.35 E-value=3.3e+02 Score=24.07 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=13.9
Q ss_pred CcEEEEEeCCCH--HHHHHHHHHcCCCeE
Q 028030 128 GAEVIGISGDDS--SSHKAFAKKYRLPYT 154 (215)
Q Consensus 128 ~v~vv~vs~d~~--~~~~~~~~~~~~~~~ 154 (215)
++.|+.=..+.. .-+.+.+++.|.+..
T Consensus 175 ~~kVvvD~~nG~~~~~~~~ll~~lG~~v~ 203 (448)
T PRK14318 175 GLKVVVDCAHGAASGVAPEAYRAAGADVI 203 (448)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEE
Confidence 555554333322 345666666666543
No 399
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=30.30 E-value=96 Score=24.34 Aligned_cols=53 Identities=19% Similarity=0.148 Sum_probs=34.4
Q ss_pred EEEEEEcCCCChhh-----HHHHHHHHHHHHHHHHc-------C--cEEEE--EeCCC-------HHHHHHHHHHcC
Q 028030 97 VVVYFYPADETPGC-----TKQACAFRDSYEKFKKA-------G--AEVIG--ISGDD-------SSSHKAFAKKYR 150 (215)
Q Consensus 97 ~ll~f~~a~~C~~C-----~~~~~~l~~l~~~~~~~-------~--v~vv~--vs~d~-------~~~~~~~~~~~~ 150 (215)
+..+=| ++||..| .+.+..|..+.+++-.+ . +.|+| |..|+ .+..++|++..|
T Consensus 76 ~aFYRg-aDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~g 151 (210)
T KOG0394|consen 76 VAFYRG-ADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKG 151 (210)
T ss_pred cceecC-CceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcC
Confidence 444444 7778877 67888899988887432 2 34444 33433 467899998766
No 400
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=29.95 E-value=3.3e+02 Score=24.02 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=7.1
Q ss_pred EEEEEcCCCcEE
Q 028030 181 QTYILDKNGVVQ 192 (215)
Q Consensus 181 ~~~lid~~G~v~ 192 (215)
+..++|++|+++
T Consensus 244 R~~~vd~~G~~l 255 (443)
T TIGR01455 244 RVLAVDANGRIV 255 (443)
T ss_pred eEEEECCCCcEe
Confidence 455667776554
No 401
>PRK10867 signal recognition particle protein; Provisional
Probab=29.78 E-value=4e+02 Score=23.68 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=33.3
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEEeCCC-----HHHHHHHHHHcCCCeEE
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGISGDD-----SSSHKAFAKKYRLPYTL 155 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~-----~~~~~~~~~~~~~~~~~ 155 (215)
+++.+|.|..-.+++ =.... .+++..+.++ |..++-|+.|. .+.++.|.+..++++..
T Consensus 98 ~~p~vI~~vG~~GsG-KTTta---akLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~ 161 (433)
T PRK10867 98 KPPTVIMMVGLQGAG-KTTTA---GKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFP 161 (433)
T ss_pred CCCEEEEEECCCCCc-HHHHH---HHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEe
Confidence 567777777333333 22233 3344444444 67777788774 24566777887877543
No 402
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=29.68 E-value=1.5e+02 Score=24.60 Aligned_cols=40 Identities=23% Similarity=0.166 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCC---HHHHHHHHHHcCCC
Q 028030 113 QACAFRDSYEKFKKAGAEVIGISGDD---SSSHKAFAKKYRLP 152 (215)
Q Consensus 113 ~~~~l~~l~~~~~~~~v~vv~vs~d~---~~~~~~~~~~~~~~ 152 (215)
.+|...++++...++|+.|+.||.-+ .+...+++++.|++
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~ 188 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYH 188 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCC
Confidence 46778888899999999999999743 35678899999986
No 403
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=29.58 E-value=1.6e+02 Score=23.84 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=17.8
Q ss_pred HHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 120 SYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 120 l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
+.++.++.|+.+..=++|+++.++.+.+..|++
T Consensus 220 ~v~~~~~~G~~v~vWTVn~~~~~~~l~~~~GVd 252 (258)
T cd08573 220 YVRYWRARGIRVIAWTVNTPTEKQYFAKTLNVP 252 (258)
T ss_pred HHHHHHHCCCEEEEEecCCHHHHHHHHHHhCCC
Confidence 334444456666655666666555555435554
No 404
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=29.48 E-value=2.1e+02 Score=20.29 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=30.5
Q ss_pred HHHHHHHHcCcEEEEEeCCCHHHHHHHH---HHcCCCeEEEEcCC
Q 028030 119 DSYEKFKKAGAEVIGISGDDSSSHKAFA---KKYRLPYTLLSDEG 160 (215)
Q Consensus 119 ~l~~~~~~~~v~vv~vs~d~~~~~~~~~---~~~~~~~~~~~d~~ 160 (215)
+..+.+...|...|.+..++++++.+.. +..++++.++.|.+
T Consensus 39 ~~~~~W~~~G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~DAG 83 (115)
T cd02430 39 ELLRAWEREGQKKIVLKVNSEEELLELKKKAKSLGLPTSLIQDAG 83 (115)
T ss_pred HHHHHHHhcCCcEEEEecCCHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4556777789899998888887665554 46677777777654
No 405
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=29.35 E-value=1.7e+02 Score=19.88 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=30.3
Q ss_pred EEEeCCCHHHHHHHHHHcCCCeE-----EEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030 132 IGISGDDSSSHKAFAKKYRLPYT-----LLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY 195 (215)
Q Consensus 132 v~vs~d~~~~~~~~~~~~~~~~~-----~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~ 195 (215)
+.+.+++-++..+.+++.|..+. .+.... .. .+| .+..++.|++|..+...
T Consensus 62 ~~~~v~dvd~~~~~l~~~G~~~~~~~~~~~~~~~-------~~---~~g---~~~~~~~DPdG~~ie~~ 117 (120)
T cd08350 62 CCLRLPDVAALHAEFRAAGLPETGSGIPRITPPE-------DQ---PWG---MREFALVDPDGNLLRFG 117 (120)
T ss_pred EEEEeCCHHHHHHHHHHhCccccccCCCcccCCc-------CC---CCc---eeEEEEECCCCCEEEee
Confidence 45667787777777777777632 111100 00 011 22689999999987654
No 406
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=29.32 E-value=3.8e+02 Score=23.76 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEE
Q 028030 141 SHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQ 192 (215)
Q Consensus 141 ~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~ 192 (215)
.+.+++++.+.++-+..|++++ +..++|++|+++
T Consensus 228 ~l~~~v~~~~adlGia~DgDaD------------------R~~~vde~G~~l 261 (456)
T PRK15414 228 DTRNAVIKHGADMGIAFDGDFD------------------RCFLFDEKGQFI 261 (456)
T ss_pred HHHHHHHHcCCCEEEEECCCcc------------------eEEEECCCCCEe
Confidence 3556666677777777766532 566778887763
No 407
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=29.15 E-value=1.6e+02 Score=19.01 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=32.0
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD 137 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d 137 (215)
.+..+-|.|+ +..-..-...-..+.+|.+.+.+.|+.+..+++.
T Consensus 34 ~~~~l~v~~~-~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~ 77 (85)
T PF02120_consen 34 QGGNLSVQFT-AENPETKELLRQNLPELKERLQAQGLEVVNLSVS 77 (85)
T ss_dssp ETTEEEEEEE---SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEE
T ss_pred eCCEEEEEEE-ECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEE
Confidence 4567888898 6665666667777888999999999999987753
No 408
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=28.99 E-value=1.7e+02 Score=22.13 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcC
Q 028030 118 RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDE 159 (215)
Q Consensus 118 ~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~ 159 (215)
+++.+.|++-|..++.++..+.+.+.++.+...-..-++..+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~ 43 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQ 43 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECC
Confidence 456778888899999999876655555555444466666544
No 409
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=28.64 E-value=1.8e+02 Score=23.24 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCcE--EEEEeCCCHHHHHHHHHHcCCCeEEEE
Q 028030 109 GCTKQACAFRDSYEKFKKAGAE--VIGISGDDSSSHKAFAKKYRLPYTLLS 157 (215)
Q Consensus 109 ~C~~~~~~l~~l~~~~~~~~v~--vv~vs~d~~~~~~~~~~~~~~~~~~~~ 157 (215)
.|......+.+..+.-++.|.+ +=.++..+++...+|+++.++.+.+++
T Consensus 87 ~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H 137 (217)
T COG0269 87 LGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILH 137 (217)
T ss_pred EecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEE
Confidence 3444555555555444444444 445788999999999999999877664
No 410
>PF06616 BsuBI_PstI_RE: BsuBI/PstI restriction endonuclease C-terminus; InterPro: IPR009528 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (3.1.21.4 from EC). The enzymes of the BsuBI restriction/modification (R/M) system recognise the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 2IXS_B.
Probab=28.50 E-value=1.5e+02 Score=25.04 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=40.7
Q ss_pred CCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC-CCHHHHHHHHH
Q 028030 69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG-DDSSSHKAFAK 147 (215)
Q Consensus 69 ~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~-d~~~~~~~~~~ 147 (215)
..-+++||+.+.+.+.+.+ ++|.-+ ++.-|.-.+-...|.++.+.- ...++.|+. -|...+++|+.
T Consensus 210 ~~h~klPDvVl~~~~k~wl---------~liEaV-tS~GPv~~kR~~eL~~l~~~~---~~g~vfVTAF~dr~~f~k~~~ 276 (306)
T PF06616_consen 210 DAHGKLPDVVLYDEEKNWL---------FLIEAV-TSHGPVDPKRKRELEELFEGS---KAGLVFVTAFPDRKTFRKYLS 276 (306)
T ss_dssp -TT----SEEEEETTTTEE---------EEEEE---TT----HHHHHHHHHHT-BT---TCEEEEEEEESSHHHHGGGGG
T ss_pred cccCCCCCEEEEeCCCCcE---------EEEEEE-cCcCCCCHHHHHHHHHHHhcC---CCCeEEEEeCCCHHHHHHHHH
Confidence 3456788888866654432 888888 888787777777777765544 466777764 66667899999
Q ss_pred HcCCC
Q 028030 148 KYRLP 152 (215)
Q Consensus 148 ~~~~~ 152 (215)
+..+.
T Consensus 277 ~iAWe 281 (306)
T PF06616_consen 277 EIAWE 281 (306)
T ss_dssp GS-SS
T ss_pred Hhhcc
Confidence 88887
No 411
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=28.42 E-value=1.5e+02 Score=18.19 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCcEEEEEeC-C---CHHHHHHHHHHcCCCe
Q 028030 117 FRDSYEKFKKAGAEVIGISG-D---DSSSHKAFAKKYRLPY 153 (215)
Q Consensus 117 l~~l~~~~~~~~v~vv~vs~-d---~~~~~~~~~~~~~~~~ 153 (215)
+.++.+..+++|+..++|+- + ....+.++.++.++.+
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~ 57 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKP 57 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeE
Confidence 55667777778999999873 2 2345556666666553
No 412
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=28.36 E-value=3e+02 Score=24.25 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=7.8
Q ss_pred EEEEEcCCCcEE
Q 028030 181 QTYILDKNGVVQ 192 (215)
Q Consensus 181 ~~~lid~~G~v~ 192 (215)
+..++|.+|+++
T Consensus 245 R~~~vD~~G~~i 256 (440)
T PRK14323 245 RALFVDRRGRLF 256 (440)
T ss_pred eeEEECCCCcEe
Confidence 566677777664
No 413
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=28.35 E-value=2.4e+02 Score=23.07 Aligned_cols=113 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD 172 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 172 (215)
.|+.+||+.. ..-..+...+.++.+++.-. +.++.+.. +.+.+.+.....+ ...+-.+.-....+.+....+
T Consensus 74 ~g~~vIid~~-----~~~~~~~~~~~~la~~~~~~-~~~v~l~~-~~e~~~~R~~~R~-~~~~~~~~i~~~~~~~~~~~~ 145 (300)
T PHA02530 74 SGKSVIISDT-----NLNPERRRKWKELAKELGAE-FEEKVFDV-PVEELVKRNRKRG-ERAVPEDVLRSMFKQMKEYRG 145 (300)
T ss_pred cCCeEEEeCC-----CCCHHHHHHHHHHHHHcCCe-EEEEEeCC-CHHHHHHHHHccC-cCCCCHHHHHHHHHHHHHhcC
Q ss_pred C-------CCCCCccEEEEEcCCCcEEEEEeC---------CCCCCccHHHHHHHHhcC
Q 028030 173 F-------FGSLPGRQTYILDKNGVVQLIYNN---------QFQPEKHIDETLKFLQSS 215 (215)
Q Consensus 173 ~-------~g~~p~~~~~lid~~G~v~~~~~g---------~~~~~~~~~~il~~l~~s 215 (215)
. +..-+ ..+++|-||.+...... .....+.+.++++.+++.
T Consensus 146 ~~~p~~~~~~~~~--~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 202 (300)
T PHA02530 146 LVWPVYTADPGLP--KAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAA 202 (300)
T ss_pred CCCceeccCCCCC--CEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhC
No 414
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=27.66 E-value=1.1e+02 Score=24.03 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=25.1
Q ss_pred CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCC
Q 028030 128 GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEG 160 (215)
Q Consensus 128 ~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~ 160 (215)
++.+|-|+-.+.....+.++.||+.|-+.-|..
T Consensus 33 ~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~ 65 (204)
T PF12687_consen 33 GLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKS 65 (204)
T ss_pred CceEEecCHhhHHHHHHHHHHcCCceEEeeccC
Confidence 577777777777788888888888888876543
No 415
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=27.45 E-value=1.1e+02 Score=27.58 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCcEEEEEeC-----CCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030 116 AFRDSYEKFKKAGAEVIGISG-----DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA 171 (215)
Q Consensus 116 ~l~~l~~~~~~~~v~vv~vs~-----d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 171 (215)
.+.++.+.++...+.+|+-+. |.++-++...+..|+++.++..++..-...+|+..
T Consensus 63 ~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~ 123 (492)
T COG0248 63 RFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVAS 123 (492)
T ss_pred HHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHh
Confidence 344444444444455555442 55677777788999999999877766666666654
No 416
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=27.37 E-value=2.2e+02 Score=19.81 Aligned_cols=57 Identities=11% Similarity=0.020 Sum_probs=32.7
Q ss_pred CcEEEEEeCCCHHHHH---HHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030 128 GAEVIGISGDDSSSHK---AFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 128 ~v~vv~vs~d~~~~~~---~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~ 198 (215)
++.-+++.+++.+++. +-+++.|++ ++.++.. ..++. .- ..++.|++|.++....+.
T Consensus 59 ~~~hl~~~v~d~~~~~~~~~~l~~~G~~--i~~~~~~---~~~~~-------~~--~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 59 GLHHVAFEVESLDDILRAADRLAANGIQ--IEFGPGR---HGPGN-------NL--FLYFRDPDGNRVELSAEM 118 (131)
T ss_pred CeeEEEEEcCCHHHHHHHHHHHHHcCCe--eEECCCc---cCCCC-------cE--EEEEECCCCCEEEEEcCC
Confidence 5667777787775444 344445554 3333220 00111 11 578999999999877664
No 417
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=27.27 E-value=2.4e+02 Score=26.10 Aligned_cols=67 Identities=18% Similarity=0.075 Sum_probs=42.5
Q ss_pred CCCCCCCCeEEeCCCCCeeecCCcCC--CcEEEEEEcCCCChhhHHHHHHHHHHHHHHH-HcCcEEEEEeC
Q 028030 69 SKGQAPPSFTLKDQEGRNVSLSKFKG--KPVVVYFYPADETPGCTKQACAFRDSYEKFK-KAGAEVIGISG 136 (215)
Q Consensus 69 ~~g~~~P~f~l~~~~g~~~~l~~~~g--k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~-~~~v~vv~vs~ 136 (215)
.-|.++....+.|-.+.-..-.-.++ -.++|.|. |++.=.-++.+|.|-.|+..-. .+++.|||+.-
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iVIFG-ATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR 129 (573)
T PLN02640 60 SNGHPLNAVSLQDGENHLTEEHAEKGESTLSITVVG-ASGDLAKKKIFPALFALFYEDWLPENFTVFGYAR 129 (573)
T ss_pred CCCCcccceecccccccccHhhccCCCCCeEEEEeC-CccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEEC
Confidence 34566666666654332111111233 35677777 8887777899999999985322 24799999985
No 418
>PRK10291 glyoxalase I; Provisional
Probab=26.83 E-value=2.2e+02 Score=19.68 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=36.1
Q ss_pred CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030 128 GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 128 ~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g 197 (215)
++.-+++.+++.++..+.+++.|+.+..- .. .. ..+. .. ..|+.|++|..+.....
T Consensus 65 ~~~hlaf~V~d~~~~~~~l~~~G~~~~~~--~~-~~--~~~~-------~~--~~~i~DPdG~~iel~~~ 120 (129)
T PRK10291 65 AYGHIALSVDNAAEACEKIRQNGGNVTRE--AG-PV--KGGT-------TV--IAFVEDPDGYKIELIEE 120 (129)
T ss_pred CeeEEEEEeCCHHHHHHHHHHcCCccccC--Cc-cc--CCCc-------eE--EEEEECCCCCEEEEEEc
Confidence 46668888999888888888888764321 10 00 0111 11 46789999999987653
No 419
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=26.82 E-value=1.8e+02 Score=18.79 Aligned_cols=49 Identities=22% Similarity=0.248 Sum_probs=26.9
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEE
Q 028030 129 AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQL 193 (215)
Q Consensus 129 v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~ 193 (215)
...+++.+++-+.+.+.+++.|+++.. .+.. ... .- .+++.|++|..+.
T Consensus 65 ~~~~~~~v~d~~~~~~~l~~~g~~~~~--~~~~-------~~~-----~~--~~~~~DP~G~~iE 113 (114)
T cd07245 65 DDHIAFRVDDLDAFRARLKAAGVPYTE--SDVP-------GDG-----VR--QLFVRDPDGNRIE 113 (114)
T ss_pred cceEEEEeCCHHHHHHHHHHcCCCccc--ccCC-------CCC-----cc--EEEEECCCCCEEe
Confidence 445556666666666666666655322 1111 011 22 6788999998763
No 420
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=26.65 E-value=3.9e+02 Score=23.74 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=8.0
Q ss_pred EEEEEcCCCcEE
Q 028030 181 QTYILDKNGVVQ 192 (215)
Q Consensus 181 ~~~lid~~G~v~ 192 (215)
+..++|.+|+++
T Consensus 260 R~~~vd~~G~~i 271 (465)
T PRK14317 260 RVLAVDGQGRVV 271 (465)
T ss_pred EEEEECCCCCEE
Confidence 456677777664
No 421
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=26.63 E-value=87 Score=22.17 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=22.7
Q ss_pred eecCCcCCCcEEEEEEcCCCChhhHHHHHHHHH
Q 028030 87 VSLSKFKGKPVVVYFYPADETPGCTKQACAFRD 119 (215)
Q Consensus 87 ~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~ 119 (215)
+.+++..|..++|.=- ..=|+.|+-.|..+.+
T Consensus 59 l~~~~~~Gd~m~I~G~-ypPC~~CkG~Mr~~s~ 90 (118)
T PF14427_consen 59 LPLNQVPGDRMLIDGQ-YPPCNSCKGKMRRASE 90 (118)
T ss_pred cCccccCCceEEEeee-cCCCchhHHHHHHhhh
Confidence 4556667888888888 5558899977655443
No 422
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=26.61 E-value=1.1e+02 Score=22.18 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=12.6
Q ss_pred EEEEEcCCCcEEEE
Q 028030 181 QTYILDKNGVVQLI 194 (215)
Q Consensus 181 ~~~lid~~G~v~~~ 194 (215)
.++++|++|++++.
T Consensus 52 ~~~~~d~~g~~~~~ 65 (161)
T PF05228_consen 52 LIFILDPDGRVLYS 65 (161)
T ss_pred EEEEEcCCCCEEEE
Confidence 69999999999983
No 423
>PRK06934 flavodoxin; Provisional
Probab=26.51 E-value=1.3e+02 Score=24.08 Aligned_cols=9 Identities=0% Similarity=-0.038 Sum_probs=3.8
Q ss_pred HHHHHHHHc
Q 028030 141 SHKAFAKKY 149 (215)
Q Consensus 141 ~~~~~~~~~ 149 (215)
++++|+++.
T Consensus 209 ~I~~Wl~~l 217 (221)
T PRK06934 209 EIINWLNTL 217 (221)
T ss_pred HHHHHHHHc
Confidence 344444443
No 424
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=26.50 E-value=2.2e+02 Score=22.77 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=27.9
Q ss_pred HHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEE
Q 028030 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLL 156 (215)
Q Consensus 121 ~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~ 156 (215)
.++++++|+.++.++.-....+.+++++++++-+++
T Consensus 25 i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~~~~I 60 (256)
T TIGR01486 25 LERLQELGIPVIPCTSKTAAEVEYLRKELGLEDPFI 60 (256)
T ss_pred HHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCcEE
Confidence 344556799999999999999999999988763343
No 425
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=26.45 E-value=1.6e+02 Score=26.36 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 114 ACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 114 ~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
...|++|++.+.+.|+.++....|+.+.+.++++++++.
T Consensus 54 ~~sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~~~ 92 (461)
T COG0415 54 LQSLQALQQSLAELGIPLLVREGDPEQVLPELAKQLAAT 92 (461)
T ss_pred HHHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhCcc
Confidence 345899999999999999999999999999999988855
No 426
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=26.35 E-value=1.8e+02 Score=22.72 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=26.9
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCc
Q 028030 129 AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGV 190 (215)
Q Consensus 129 v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~ 190 (215)
-+||-|...+.+...+.++.++..+......+......+|+.. .....++++|.|..
T Consensus 27 ~eiivvD~gStD~t~~i~~~~~~~v~~~~~~g~~~~~n~~~~~-----a~~d~vl~lDaD~~ 83 (229)
T cd02511 27 DEIIVVDSGSTDRTVEIAKEYGAKVYQRWWDGFGAQRNFALEL-----ATNDWVLSLDADER 83 (229)
T ss_pred CEEEEEeCCCCccHHHHHHHcCCEEEECCCCChHHHHHHHHHh-----CCCCEEEEEeCCcC
Confidence 3677665443334445555666554333222223334444442 12225666776644
No 427
>PRK08244 hypothetical protein; Provisional
Probab=26.33 E-value=51 Score=29.35 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=28.1
Q ss_pred CCCCCCCCCeEEeCCCCCeeecCCc--CCCcEEEEEE
Q 028030 68 VSKGQAPPSFTLKDQEGRNVSLSKF--KGKPVVVYFY 102 (215)
Q Consensus 68 ~~~g~~~P~f~l~~~~g~~~~l~~~--~gk~~ll~f~ 102 (215)
..+|..+|+..+...+|..+.+.++ .|+++||.|-
T Consensus 391 ~~~G~r~p~~~~~~~~~~~~~l~~~~~~~~~~ll~~~ 427 (493)
T PRK08244 391 PLNGKRLPDLELTLSDGESERLYSLLHKGTFLLLSFG 427 (493)
T ss_pred CCCCCCCCCcceecCCCCceeHHHhhcCCeEEEEEec
Confidence 4689999999997667876778776 3579999886
No 428
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=26.33 E-value=1.6e+02 Score=27.91 Aligned_cols=14 Identities=14% Similarity=0.225 Sum_probs=6.7
Q ss_pred HHHHHcCCCeEEEE
Q 028030 144 AFAKKYRLPYTLLS 157 (215)
Q Consensus 144 ~~~~~~~~~~~~~~ 157 (215)
+.+++.|+...+++
T Consensus 455 ~~Lr~~GI~vvMiT 468 (679)
T PRK01122 455 AELRKMGIKTVMIT 468 (679)
T ss_pred HHHHHCCCeEEEEC
Confidence 34445555544444
No 429
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=26.17 E-value=3.1e+02 Score=24.21 Aligned_cols=12 Identities=17% Similarity=0.481 Sum_probs=6.7
Q ss_pred EEEEEcCCCcEE
Q 028030 181 QTYILDKNGVVQ 192 (215)
Q Consensus 181 ~~~lid~~G~v~ 192 (215)
+..++|++|+++
T Consensus 249 R~~~vd~~G~~i 260 (450)
T PRK14314 249 RLIVVDEKGHIV 260 (450)
T ss_pred eEEEECCCCcCc
Confidence 455566666543
No 430
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=26.03 E-value=2.1e+02 Score=21.41 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 114 ACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 114 ~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
.|.+.++.+.++++|+.++-||......++..++.+++.
T Consensus 82 ~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 82 RDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD 120 (201)
T ss_pred CccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC
Confidence 345566666667778888888877777777777777765
No 431
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=26.03 E-value=1.4e+02 Score=24.00 Aligned_cols=46 Identities=11% Similarity=0.223 Sum_probs=28.4
Q ss_pred hHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccH-HHHHHHHh
Q 028030 162 KVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHI-DETLKFLQ 213 (215)
Q Consensus 162 ~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~-~~il~~l~ 213 (215)
..++..|+.+ .+- -.|.||++|+|...-.........+ .++++.++
T Consensus 171 ~~A~~~g~~G----~V~--V~f~i~~~G~v~~v~v~~SSg~~~lD~aal~air 217 (244)
T COG0810 171 AQARARGIEG----TVK--VKFTIDPDGNVTNVRVLKSSGSPALDRAALEAIR 217 (244)
T ss_pred HHHHhcCCCc----eEE--EEEEECCCCCEeeeEEeecCCcHHHHHHHHHHHH
Confidence 3455556654 355 7899999999988765544444444 34445444
No 432
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=25.99 E-value=2.6e+02 Score=21.50 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=25.8
Q ss_pred HHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEE
Q 028030 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLL 156 (215)
Q Consensus 122 ~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~ 156 (215)
++++++|+.|+-.+.-....++.+.+.+++.-+++
T Consensus 28 ~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i 62 (215)
T TIGR01487 28 RKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVV 62 (215)
T ss_pred HHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEE
Confidence 44455789999888888888888888888764333
No 433
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=25.95 E-value=4.5e+02 Score=23.17 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=35.4
Q ss_pred cCcEEEEEeCCCH-----HHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCc
Q 028030 127 AGAEVIGISGDDS-----SSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGV 190 (215)
Q Consensus 127 ~~v~vv~vs~d~~-----~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~ 190 (215)
.|..|..|+.|+- +.++.|.+..++++....+. .++.....-.. ...++|||--|.
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~-~~l~~~l~~~~-------~~DlVlIDt~G~ 310 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDP-KELAKALEQLR-------DCDVILIDTAGR 310 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCH-HhHHHHHHHhC-------CCCEEEEeCCCC
Confidence 3678888888873 45788888888887665543 23433332111 125788887776
No 434
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=25.87 E-value=1.5e+02 Score=22.87 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 114 ACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 114 ~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
.+.+.++.+.++++|+.+.-||......++.+++.+++.
T Consensus 87 ~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~ 125 (219)
T TIGR00338 87 TEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLD 125 (219)
T ss_pred CCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 345566667777778888888888777778888887765
No 435
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=25.86 E-value=3.5e+02 Score=21.64 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=35.8
Q ss_pred CCCCCeeecCCcCCCcEEEEEEcCCC---ChhhHHH---------------HHHHHHHHHHHHHcCcEEEEEeCCCH---
Q 028030 81 DQEGRNVSLSKFKGKPVVVYFYPADE---TPGCTKQ---------------ACAFRDSYEKFKKAGAEVIGISGDDS--- 139 (215)
Q Consensus 81 ~~~g~~~~l~~~~gk~~ll~f~~a~~---C~~C~~~---------------~~~l~~l~~~~~~~~v~vv~vs~d~~--- 139 (215)
..+|+ ..+.|.+.+.+.+ .-| |.+|-.. .+.+.+..+++...++..|.++..+|
T Consensus 12 SiQGE----G~~~G~~~~FvR~-~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~ 86 (238)
T TIGR03365 12 TIQGE----GMVIGQKTMFVRT-GGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPALQ 86 (238)
T ss_pred ccccC----ccccCCeEEEEEe-CCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchhhh
Confidence 45554 3356777665554 333 7777421 12222233333333477788887655
Q ss_pred ---HHHHHHHHHcCCCeEE
Q 028030 140 ---SSHKAFAKKYRLPYTL 155 (215)
Q Consensus 140 ---~~~~~~~~~~~~~~~~ 155 (215)
.++-+++++.++.+.+
T Consensus 87 ~~l~~li~~l~~~g~~v~l 105 (238)
T TIGR03365 87 KPLGELIDLGKAKGYRFAL 105 (238)
T ss_pred HhHHHHHHHHHHCCCCEEE
Confidence 2344444556665544
No 436
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=25.79 E-value=99 Score=23.06 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=22.7
Q ss_pred HHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 119 DSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 119 ~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
++.+.+++.|+.++-||.+....++.+++..+++
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGID 129 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 4455555667777777777666667776666665
No 437
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=25.65 E-value=1.3e+02 Score=23.00 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEEeC-----C--CHHHHHHHHHHcC
Q 028030 111 TKQACAFRDSYEKFKKAGAEVIGISG-----D--DSSSHKAFAKKYR 150 (215)
Q Consensus 111 ~~~~~~l~~l~~~~~~~~v~vv~vs~-----d--~~~~~~~~~~~~~ 150 (215)
.-....+++..++++++|++-|+|+. | .+..+++++++.|
T Consensus 130 ~ld~~~v~~~~~~l~~~gv~avAV~~~fS~~np~hE~~v~eii~e~g 176 (176)
T PF05378_consen 130 PLDEDEVREALRELKDKGVEAVAVSLLFSYRNPEHEQRVAEIIREEG 176 (176)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECccCCCCHHHHHHHHHHHHhcC
Confidence 33456788888888988999998874 2 2345666666543
No 438
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=25.35 E-value=1.7e+02 Score=27.57 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=11.7
Q ss_pred HHcCcEEEEEeCCCHHHHHHHHHHcCC
Q 028030 125 KKAGAEVIGISGDDSSSHKAFAKKYRL 151 (215)
Q Consensus 125 ~~~~v~vv~vs~d~~~~~~~~~~~~~~ 151 (215)
++.|++++.++.|++...+...++.|+
T Consensus 454 r~~GI~vvMiTGDn~~TA~aIA~elGI 480 (673)
T PRK14010 454 REMGIETVMCTGDNELTAATIAKEAGV 480 (673)
T ss_pred HHCCCeEEEECCCCHHHHHHHHHHcCC
Confidence 333444444444444444444444444
No 439
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.29 E-value=1.6e+02 Score=19.85 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=11.8
Q ss_pred EEEEEcCCCcEEEE
Q 028030 181 QTYILDKNGVVQLI 194 (215)
Q Consensus 181 ~~~lid~~G~v~~~ 194 (215)
..++.|++|.++..
T Consensus 109 ~~~~~DPdG~~iE~ 122 (125)
T cd08357 109 TFFLKDPSGNALEF 122 (125)
T ss_pred EEEEECCCCCEEEE
Confidence 68899999998754
No 440
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=25.26 E-value=2.4e+02 Score=19.50 Aligned_cols=18 Identities=11% Similarity=-0.058 Sum_probs=14.3
Q ss_pred EEEEEcCCCcEEEEEeCC
Q 028030 181 QTYILDKNGVVQLIYNNQ 198 (215)
Q Consensus 181 ~~~lid~~G~v~~~~~g~ 198 (215)
..++.||+|..+..+.+.
T Consensus 103 ~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 103 FIAFRDPSGNSIELVVRP 120 (124)
T ss_pred EEEEECcCCCEEEEEEee
Confidence 568999999998876553
No 441
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=25.22 E-value=4.2e+02 Score=23.43 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=8.1
Q ss_pred EEEEEcCCCcEE
Q 028030 181 QTYILDKNGVVQ 192 (215)
Q Consensus 181 ~~~lid~~G~v~ 192 (215)
+..++|.+|+++
T Consensus 238 R~~vvd~~G~~~ 249 (449)
T PRK14321 238 RIGVVDDQGNFV 249 (449)
T ss_pred eEEEECCCCCEe
Confidence 566667777665
No 442
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=25.03 E-value=2.1e+02 Score=18.91 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=31.2
Q ss_pred HHHcCcEEEEEeCCCH----HHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030 124 FKKAGAEVIGISGDDS----SSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP 170 (215)
Q Consensus 124 ~~~~~v~vv~vs~d~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 170 (215)
.+.....+|.|..|-. +.+..+++.+++++ .......++..+.|..
T Consensus 20 Ik~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv-~~~~t~~eLG~A~G~~ 69 (82)
T PRK13601 20 ITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKI-VYIDTMKELGVMCGID 69 (82)
T ss_pred HHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCE-EEeCCHHHHHHHHCCc
Confidence 3433467777776643 45566677888888 3445567888899887
No 443
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.02 E-value=67 Score=17.69 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHcCCCeEEEE
Q 028030 138 DSSSHKAFAKKYRLPYTLLS 157 (215)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~ 157 (215)
+.+++++|++.+|+.++--.
T Consensus 5 s~~~L~~wL~~~gi~~~~~~ 24 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSA 24 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCC
Confidence 35688999999998876443
No 444
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=24.63 E-value=1.7e+02 Score=27.80 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=26.2
Q ss_pred EEEEEEcCCCChhhHH-----HHHHHHHHHHHHHHcCcEEEE
Q 028030 97 VVVYFYPADETPGCTK-----QACAFRDSYEKFKKAGAEVIG 133 (215)
Q Consensus 97 ~ll~f~~a~~C~~C~~-----~~~~l~~l~~~~~~~~v~vv~ 133 (215)
=-+.|| +..+.+|.. ...+|+++.+++.+.|++||.
T Consensus 243 dP~~fF-Ap~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VIL 283 (697)
T COG1523 243 DPLNFF-APEGRYASNPEPATRIKEFKDMVKALHKAGIEVIL 283 (697)
T ss_pred Cccccc-CCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEE
Confidence 345566 666555532 477889999999999999986
No 445
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=24.63 E-value=1.3e+02 Score=22.92 Aligned_cols=38 Identities=5% Similarity=0.094 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 115 CAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 115 ~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
|...++.+.++++|+.+.-+|......++.+++.+++.
T Consensus 88 ~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 125 (213)
T TIGR01449 88 PGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA 125 (213)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH
Confidence 34445555556667776666666666667777766653
No 446
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=24.63 E-value=3.1e+02 Score=23.13 Aligned_cols=38 Identities=24% Similarity=0.187 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 115 CAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 115 ~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
|.+.+..++++++|+.+.-+|....+.+.+.++..|+.
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd 186 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLD 186 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCC
Confidence 56667777788889998888888888888999999988
No 447
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=24.58 E-value=53 Score=26.59 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=23.6
Q ss_pred cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe
Q 028030 96 PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS 135 (215)
Q Consensus 96 ~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs 135 (215)
+.||..|-+-.|..|...-..|.++.+ + -+||+++
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~----~-~~vlALs 76 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLAD----D-PGVLALS 76 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhcc----C-CCEEEEE
Confidence 356666647789999888777777643 2 3377765
No 448
>PLN02954 phosphoserine phosphatase
Probab=24.50 E-value=1.8e+02 Score=22.48 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 114 ACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 114 ~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
.|.+.++.+.++++|+.+.-+|......++..++.++++
T Consensus 86 ~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 86 SPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred CccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCC
Confidence 466677777777788888888888888888888888875
No 449
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=24.35 E-value=1.1e+02 Score=18.74 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.3
Q ss_pred CCccEEEEEcCCCcEEEEEe
Q 028030 177 LPGRQTYILDKNGVVQLIYN 196 (215)
Q Consensus 177 ~p~~~~~lid~~G~v~~~~~ 196 (215)
.|.+-.+.+|.+|+|....-
T Consensus 40 r~dRLnv~~D~~g~I~~v~C 59 (60)
T PF11720_consen 40 RPDRLNVEVDDDGVITRVRC 59 (60)
T ss_pred CCCcEEEEECCCCcEEEEec
Confidence 56778999999999987653
No 450
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=24.22 E-value=2.6e+02 Score=24.95 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeE
Q 028030 112 KQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYT 154 (215)
Q Consensus 112 ~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~ 154 (215)
=.+..|.+|.+++.+.|+.++....+..+.+.+++++++++-.
T Consensus 52 Fl~esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~~V 94 (471)
T TIGR03556 52 YLIGCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAKAV 94 (471)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCCEE
Confidence 3567888899999988988888877766667777776666533
No 451
>PRK13239 alkylmercury lyase; Provisional
Probab=23.99 E-value=1.7e+02 Score=23.22 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030 138 DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY 195 (215)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~ 195 (215)
+.+++++.+++... +..|+++.+.. ||+.. .|+++.|-+ +|+-.+.+
T Consensus 49 ~~~~v~~~L~~l~~---~~~d~~g~iv~-~plS~-----~pT~H~v~v--~Gr~lyt~ 95 (206)
T PRK13239 49 PVEEVEAVLEAMPD---TEYDEDGRIIG-YGLTL-----RPTPHRFEV--DGRQLYTW 95 (206)
T ss_pred CHHHHHHHHHhCCC---eEECCCCCEEe-ccccC-----CCcCcEEEE--CCEEEEee
Confidence 45677777777542 24577777744 88887 888888888 77766665
No 452
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=23.98 E-value=1.3e+02 Score=21.15 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=24.1
Q ss_pred CChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030 159 EGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197 (215)
Q Consensus 159 ~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g 197 (215)
.+.++...||+.. .| +.+++ ++|+.+....|
T Consensus 70 ~e~~L~~r~gv~~-----~P--aLvf~-R~g~~lG~i~g 100 (107)
T PF07449_consen 70 AERALAARFGVRR-----WP--ALVFF-RDGRYLGAIEG 100 (107)
T ss_dssp HHHHHHHHHT-TS-----SS--EEEEE-ETTEEEEEEES
T ss_pred hHHHHHHHhCCcc-----CC--eEEEE-ECCEEEEEecC
Confidence 4568999999987 89 66666 79999888776
No 453
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=23.97 E-value=2.6e+02 Score=21.98 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeE--EEEcCC
Q 028030 117 FRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYT--LLSDEG 160 (215)
Q Consensus 117 l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~--~~~d~~ 160 (215)
+.++.+ ..++|+.++.+|.-....+++++++++++.+ ++...+
T Consensus 20 ~~~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~~~~~~I~~nG 64 (236)
T TIGR02471 20 FVELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLPSPDVLIARVG 64 (236)
T ss_pred HHHHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCCCCCEEEECCC
Confidence 334444 3566899999999999999999999887533 444433
No 454
>PRK09267 flavodoxin FldA; Validated
Probab=23.97 E-value=2.3e+02 Score=20.99 Aligned_cols=11 Identities=0% Similarity=-0.194 Sum_probs=5.7
Q ss_pred HHHHHHHcCCC
Q 028030 142 HKAFAKKYRLP 152 (215)
Q Consensus 142 ~~~~~~~~~~~ 152 (215)
+.++++..+..
T Consensus 105 l~~~l~~~g~~ 115 (169)
T PRK09267 105 LYDIVEPRGAT 115 (169)
T ss_pred HHHHHHHCCCE
Confidence 34555565644
No 455
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=23.96 E-value=2.2e+02 Score=23.32 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=37.2
Q ss_pred cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
|++.++||++- .....+. ...|..|.+.++..|+.+|+|...+++.. +.....+++
T Consensus 48 F~~~PvVlDl~--~l~~~~~--~~dl~~L~~~Lr~~gl~~vGV~g~~~~~~-~~a~~~gL~ 103 (248)
T PRK04596 48 FGRAAVILDFG--GLSQVPD--LATAKALLDGLRSAGVLPVALAYGTSEID-LLSQQLGLP 103 (248)
T ss_pred hCCCcEEEEch--hhcCccc--cccHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHHCCCC
Confidence 47889999995 2222221 23467777888889999999998776643 344444554
No 456
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=23.78 E-value=1e+02 Score=20.88 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=9.4
Q ss_pred CChhhHHHHHHHHHH
Q 028030 106 ETPGCTKQACAFRDS 120 (215)
Q Consensus 106 ~C~~C~~~~~~l~~l 120 (215)
.|+.|++..-.|.+.
T Consensus 21 ~cpf~~rvrl~L~eK 35 (91)
T cd03061 21 NCPFCQRLFMVLWLK 35 (91)
T ss_pred CChhHHHHHHHHHHC
Confidence 477888765555443
No 457
>PLN02591 tryptophan synthase
Probab=23.69 E-value=3.4e+02 Score=22.10 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCcEEEE---EeCCCHHHHHHHHHHcCCCeEEEEc
Q 028030 115 CAFRDSYEKFKKAGAEVIG---ISGDDSSSHKAFAKKYRLPYTLLSD 158 (215)
Q Consensus 115 ~~l~~l~~~~~~~~v~vv~---vs~d~~~~~~~~~~~~~~~~~~~~d 158 (215)
..+.+..++.++.|+.=+- +..+..+++.+.++++++....+.-
T Consensus 93 ~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~ 139 (250)
T PLN02591 93 RGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTT 139 (250)
T ss_pred hHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4666667777776654333 3345556778888899999666553
No 458
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=23.66 E-value=3.8e+02 Score=21.69 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCcEEEEEeCCCH
Q 028030 115 CAFRDSYEKFKKAGAEVIGISGDDS 139 (215)
Q Consensus 115 ~~l~~l~~~~~~~~v~vv~vs~d~~ 139 (215)
..|.++-.++.+.|+.|++|..|-.
T Consensus 196 ~~l~~iI~~l~~~g~~VvAivsD~g 220 (236)
T PF12017_consen 196 DILKNIIEKLHEIGYNVVAIVSDMG 220 (236)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCC
Confidence 4455666777788888888877644
No 459
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=23.63 E-value=2.8e+02 Score=21.02 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcC
Q 028030 115 CAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR 150 (215)
Q Consensus 115 ~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~ 150 (215)
+.+.+..+++.++|+.++.++.-+...++++++..+
T Consensus 20 ~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 20 PETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 344444455566788888888888888888887643
No 460
>PF01251 Ribosomal_S7e: Ribosomal protein S7e; InterPro: IPR000554 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of Xenopus S8, and mammalian, insect and yeast S7. These proteins have about 200 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_3 2XZM_3 3U5G_H 3U5C_H.
Probab=23.53 E-value=94 Score=24.22 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=26.1
Q ss_pred eeecCCcCCCcEEEEEEcCCCChhhHHHHHHH-HHHHHHHHHcCcEEEE
Q 028030 86 NVSLSKFKGKPVVVYFYPADETPGCTKQACAF-RDSYEKFKKAGAEVIG 133 (215)
Q Consensus 86 ~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l-~~l~~~~~~~~v~vv~ 133 (215)
++.... ||..+|.|.|-.....+++....| .+|..++.++-|.||+
T Consensus 46 Ei~v~~--~kKAivIfVP~~~lk~f~KIq~rLv~ELEKKfsgk~Vv~iA 92 (189)
T PF01251_consen 46 EIEVGG--GKKAIVIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVVFIA 92 (189)
T ss_dssp EEEECT--CEEEEEEEE-CCCCHHHHHHCHHHHHHHHHCTTTCEEEEEE
T ss_pred EEEECC--CcEEEEEEEcHHHHHHHHHHHHHHHHHHHhhcCCCeEEEec
Confidence 344443 789999999877776666544333 4455555543344443
No 461
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=23.30 E-value=81 Score=26.49 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=8.8
Q ss_pred EEEcCCCChhhH
Q 028030 100 YFYPADETPGCT 111 (215)
Q Consensus 100 ~f~~a~~C~~C~ 111 (215)
..++..||+.|-
T Consensus 14 ~~~~~~~CpGCg 25 (301)
T PRK05778 14 DGLPTTWCPGCG 25 (301)
T ss_pred CCCCCCCCCCCC
Confidence 345678999995
No 462
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.15 E-value=2.9e+02 Score=22.55 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCcEEEEEe---CCCHHHHHHHHHHcCCCeEEEEcCCh
Q 028030 116 AFRDSYEKFKKAGAEVIGIS---GDDSSSHKAFAKKYRLPYTLLSDEGN 161 (215)
Q Consensus 116 ~l~~l~~~~~~~~v~vv~vs---~d~~~~~~~~~~~~~~~~~~~~d~~~ 161 (215)
.+.+..++.++.|+.=+-|. .+..+...+.++++++.+..+..++.
T Consensus 105 G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 55666677777666655553 33445666667889998776554443
No 463
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.15 E-value=5.1e+02 Score=22.64 Aligned_cols=87 Identities=10% Similarity=0.100 Sum_probs=45.8
Q ss_pred CcEEEEEEcCCCChhhH-HHHHHHHHHHHHHH-HcCcEEEEEeCCC-----HHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030 95 KPVVVYFYPADETPGCT-KQACAFRDSYEKFK-KAGAEVIGISGDD-----SSSHKAFAKKYRLPYTLLSDEGNKVRKEW 167 (215)
Q Consensus 95 k~~ll~f~~a~~C~~C~-~~~~~l~~l~~~~~-~~~v~vv~vs~d~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (215)
++.++.|+ +.. +.-+ .....|...+.... .+|-.|..|+.|. .+.++.|.+..++++....+. ..+...+
T Consensus 173 ~~~vi~lv-Gpt-GvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~-~~l~~~L 249 (388)
T PRK12723 173 KKRVFILV-GPT-GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESF-KDLKEEI 249 (388)
T ss_pred CCeEEEEE-CCC-CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcH-HHHHHHH
Confidence 34455566 433 3333 33334443332211 2356777777775 245777778888876554432 2333322
Q ss_pred CCCccCCCCCCccEEEEEcCCCcE
Q 028030 168 GVPADFFGSLPGRQTYILDKNGVV 191 (215)
Q Consensus 168 g~~~~~~g~~p~~~~~lid~~G~v 191 (215)
.-.. ...+++||--|+-
T Consensus 250 ~~~~-------~~DlVLIDTaGr~ 266 (388)
T PRK12723 250 TQSK-------DFDLVLVDTIGKS 266 (388)
T ss_pred HHhC-------CCCEEEEcCCCCC
Confidence 2211 1158899988876
No 464
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=23.02 E-value=2.8e+02 Score=23.39 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 115 CAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 115 ~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
|.+.+..++++++|..+.-+|....+.+...++..++.
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~ 188 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLE 188 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCC
Confidence 56666677778888888888888888889999999987
No 465
>PF14433 SUKH-3: SUKH-3 immunity protein
Probab=23.02 E-value=3e+02 Score=19.89 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=21.4
Q ss_pred EEEEEcCCCcEEEEEe-CCCCCCccHHHHHHHH
Q 028030 181 QTYILDKNGVVQLIYN-NQFQPEKHIDETLKFL 212 (215)
Q Consensus 181 ~~~lid~~G~v~~~~~-g~~~~~~~~~~il~~l 212 (215)
.+++||.+|+|-.... +..-...++.+.|..|
T Consensus 104 ~~l~ide~Grvy~~~~~~~~~lG~~~~~al~~L 136 (142)
T PF14433_consen 104 AILAIDESGRVYGLDDTGLWYLGDDIDEALENL 136 (142)
T ss_pred EEEEEeCCCCEEEecCCeeEEeCCCHHHHHHHH
Confidence 8999999999987654 2223345566665544
No 466
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=22.96 E-value=84 Score=21.38 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=16.6
Q ss_pred Chhh-HHHHHHHHHHHHHHHHcCcEE
Q 028030 107 TPGC-TKQACAFRDSYEKFKKAGAEV 131 (215)
Q Consensus 107 C~~C-~~~~~~l~~l~~~~~~~~v~v 131 (215)
|+.- +....++++-.++++++|+++
T Consensus 66 cpeA~~eL~~eI~eAK~dLr~kGv~~ 91 (91)
T PF08285_consen 66 CPEAAKELQKEIKEAKADLRKKGVDV 91 (91)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4544 344467777778888888764
No 467
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=22.91 E-value=2.1e+02 Score=19.54 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=13.9
Q ss_pred ccEEEEEcC-CCcEEEEEe
Q 028030 179 GRQTYILDK-NGVVQLIYN 196 (215)
Q Consensus 179 ~~~~~lid~-~G~v~~~~~ 196 (215)
....+++|+ +|+|++.+.
T Consensus 49 g~~Kli~d~~t~~IlGa~~ 67 (110)
T PF02852_consen 49 GFVKLIFDKKTGRILGAQI 67 (110)
T ss_dssp EEEEEEEETTTTBEEEEEE
T ss_pred eeeEEEEEeeccceeeeee
Confidence 346788998 899998754
No 468
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=22.91 E-value=2e+02 Score=25.97 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEeC-----CCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030 112 KQACAFRDSYEKFKKAGAEVIGISG-----DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA 171 (215)
Q Consensus 112 ~~~~~l~~l~~~~~~~~v~vv~vs~-----d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 171 (215)
..+..|.++.+.|+-..+.+++-+. |..+-+++..+..|+++.++..++..-...+|+..
T Consensus 62 ~~L~~F~~~~~~~~v~~i~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~ 126 (496)
T PRK11031 62 QCLRLFAERLQDIPPSQIRVVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAH 126 (496)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhh
Confidence 3444555555555433344554432 33456666677889999999877666666667664
No 469
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=22.84 E-value=89 Score=21.49 Aligned_cols=30 Identities=20% Similarity=0.445 Sum_probs=20.6
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEE
Q 028030 101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGI 134 (215)
Q Consensus 101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v 134 (215)
|| -..|+.|......+.+... ...++++.+
T Consensus 2 ~Y-Dg~C~lC~~~~~~l~~~d~---~~~l~~~~~ 31 (114)
T PF04134_consen 2 FY-DGDCPLCRREVRFLRRRDR---GGRLRFVDI 31 (114)
T ss_pred EE-CCCCHhHHHHHHHHHhcCC---CCCEEEEEC
Confidence 45 6789999999888877611 123666666
No 470
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=22.79 E-value=2.8e+02 Score=24.45 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030 138 DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL 212 (215)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l 212 (215)
|.+++.+++++.+.++.+-.-.+..++...|+..-..| +| +.|+.|--...+.|-.-.-..++++...+
T Consensus 361 D~~~l~~~i~~~~~dliig~s~~k~~A~~l~ip~ir~g-~P-----i~dr~~~~~~~~~Gy~G~~~l~~~i~n~~ 429 (432)
T TIGR01285 361 DLEDLEDLACAAGADLLITNSHGRALAQRLALPLVRAG-FP-----LFDQLGSQRRCRIGYRGTRDFLFDLANIM 429 (432)
T ss_pred CHHHHHHHHhhcCCCEEEECcchHHHHHHcCCCEEEec-CC-----ccccccccccCeeehHHHHHHHHHHHHHH
Confidence 55677777777776666655455667777776641111 44 34666643333333111124445555443
No 471
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=22.77 E-value=3.2e+02 Score=22.98 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=27.3
Q ss_pred CcEEEEEeCC----C----HHHHHHHHHHcCCCeEEEEcCC
Q 028030 128 GAEVIGISGD----D----SSSHKAFAKKYRLPYTLLSDEG 160 (215)
Q Consensus 128 ~v~vv~vs~d----~----~~~~~~~~~~~~~~~~~~~d~~ 160 (215)
.+.||.|+.| . ..-+.++++..|+.+-++..++
T Consensus 16 ~lDvilVtGDAYVDHPsFG~AiIgR~Le~~GyrVgIiaQPd 56 (302)
T PF08497_consen 16 ELDVILVTGDAYVDHPSFGAAIIGRVLEAHGYRVGIIAQPD 56 (302)
T ss_pred cccEEEEeCcccccCcchhHHHHHHHHHHcCCeEEEEeCCC
Confidence 3889999975 3 4688999999999999987665
No 472
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=22.66 E-value=3.5e+02 Score=20.54 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCcEEEEEeCCCH-HHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030 118 RDSYEKFKKAGAEVIGISGDDS-SSHKAFAKKYRLPYTLLSDEGNKVRKEW 167 (215)
Q Consensus 118 ~~l~~~~~~~~v~vv~vs~d~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (215)
.++.+++++.|+.|..|.+.+. +.+++..+.-|=.|....|.+ .+...|
T Consensus 126 ~~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~~tgG~~~~~~~~~-~l~~~~ 175 (183)
T cd01453 126 YETIDKLKKENIRVSVIGLSAEMHICKEICKATNGTYKVILDET-HLKELL 175 (183)
T ss_pred HHHHHHHHHcCcEEEEEEechHHHHHHHHHHHhCCeeEeeCCHH-HHHHHH
Confidence 4456677777888877776543 567777777777776666653 444333
No 473
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=22.66 E-value=2.2e+02 Score=26.99 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=12.1
Q ss_pred HHHcCcEEEEEeCCCHHHHHHHHHHcCC
Q 028030 124 FKKAGAEVIGISGDDSSSHKAFAKKYRL 151 (215)
Q Consensus 124 ~~~~~v~vv~vs~d~~~~~~~~~~~~~~ 151 (215)
+++.|++++-++.|.....+...++.|+
T Consensus 458 l~~~Gi~v~miTGD~~~ta~~iA~~lGI 485 (675)
T TIGR01497 458 LRKMGIKTIMITGDNRLTAAAIAAEAGV 485 (675)
T ss_pred HHHCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence 3333444444444444444444444444
No 474
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=22.57 E-value=2.5e+02 Score=18.80 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=10.4
Q ss_pred EEEEEcCCCcEEE
Q 028030 181 QTYILDKNGVVQL 193 (215)
Q Consensus 181 ~~~lid~~G~v~~ 193 (215)
..++.|++|.++.
T Consensus 111 ~~~~~DPdG~~iE 123 (125)
T cd07241 111 ESVILDPEGNRIE 123 (125)
T ss_pred EEEEECCCCCEEE
Confidence 4678899999875
No 475
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.50 E-value=2.7e+02 Score=19.17 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=26.6
Q ss_pred EEEEEcCCCChhhH------HHHHHHHH-HHHHHHHcCcEEEEEeC-CC--HHHHHHHHHH
Q 028030 98 VVYFYPADETPGCT------KQACAFRD-SYEKFKKAGAEVIGISG-DD--SSSHKAFAKK 148 (215)
Q Consensus 98 ll~f~~a~~C~~C~------~~~~~l~~-l~~~~~~~~v~vv~vs~-d~--~~~~~~~~~~ 148 (215)
+++|....-|..|. ..+.=|+. +.++|+++.+++-.|.. ++ .+..++|+++
T Consensus 7 l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aek 67 (106)
T COG4837 7 LVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEK 67 (106)
T ss_pred EEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHH
Confidence 44454233388883 33333433 34566666677766655 22 2444555554
No 476
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=22.37 E-value=59 Score=20.82 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=12.4
Q ss_pred cEEEEEcCCCcEEEE
Q 028030 180 RQTYILDKNGVVQLI 194 (215)
Q Consensus 180 ~~~~lid~~G~v~~~ 194 (215)
...|++|++|+|+..
T Consensus 54 g~~~ivd~~G~ii~h 68 (81)
T PF02743_consen 54 GYAFIVDKNGTIIAH 68 (81)
T ss_dssp BEEEEEETTSBBCE-
T ss_pred EEEEEEECCCCEEEe
Confidence 389999999999865
No 477
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=22.32 E-value=2.9e+02 Score=22.32 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=25.9
Q ss_pred HHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRLP 152 (215)
Q Consensus 122 ~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~ 152 (215)
.+++++|+.|+-.|.-....++.++++.+++
T Consensus 34 ~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 34 TRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 4455679999999999999999999998874
No 478
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=22.28 E-value=2.9e+02 Score=19.49 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHHHHHHHHcC
Q 028030 112 KQACAFRDSYEKFKKAGAEVIGISGD-DSSSHKAFAKKYR 150 (215)
Q Consensus 112 ~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~~~~~~~~~ 150 (215)
..++.+.++.+.++++|+.+.-+|.. .++.....++..+
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 46788999999999899988888877 6666666667665
No 479
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=22.24 E-value=41 Score=18.92 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=15.8
Q ss_pred cCCCcEEEEEEcCCCChhhH
Q 028030 92 FKGKPVVVYFYPADETPGCT 111 (215)
Q Consensus 92 ~~gk~~ll~f~~a~~C~~C~ 111 (215)
++|+.++|.-.++..|+.|-
T Consensus 20 ~~~~~~~i~~vp~~~C~~CG 39 (46)
T TIGR03831 20 YGGELIVIENVPALVCPQCG 39 (46)
T ss_pred eCCEEEEEeCCCccccccCC
Confidence 46788888777788899985
No 480
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=22.21 E-value=4.9e+02 Score=22.76 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=43.8
Q ss_pred EEEEEeCCCH---HHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHH
Q 028030 130 EVIGISGDDS---SSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206 (215)
Q Consensus 130 ~vv~vs~d~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~ 206 (215)
.+|++..+.. +..++-+++.+.++.+..|.... -||-.. - ...+++++|..+..... ..+...+
T Consensus 315 ~~Vgfaaet~~~~~~a~~kl~~k~~D~i~aNdv~~~---~fg~d~------n--~~~~~~~d~~~~~~~~~--~k~~~a~ 381 (392)
T COG0452 315 ILVGFAAETGDIVEYAREKLERKNLDLIVANDVSEI---GFGSDD------N--EVRIIDKDGEDVELPEM--SKEELAE 381 (392)
T ss_pred eEEEEeccchHHHHHHHHhhhhcCCCeEEecccccc---CCCCCc------c--ceEEecCCCCeeecccc--CHHHHHH
Confidence 7778877653 44455556778888888876655 333332 2 68889999997654433 2334445
Q ss_pred HHHHHHh
Q 028030 207 ETLKFLQ 213 (215)
Q Consensus 207 ~il~~l~ 213 (215)
++++.+.
T Consensus 382 ~i~~~i~ 388 (392)
T COG0452 382 RILDEIA 388 (392)
T ss_pred HHHHHHH
Confidence 5555543
No 481
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=22.16 E-value=5.1e+02 Score=22.74 Aligned_cols=29 Identities=7% Similarity=-0.019 Sum_probs=15.9
Q ss_pred cCcEEEEEeCCCH--HHHHHHHHHcCCCeEE
Q 028030 127 AGAEVIGISGDDS--SSHKAFAKKYRLPYTL 155 (215)
Q Consensus 127 ~~v~vv~vs~d~~--~~~~~~~~~~~~~~~~ 155 (215)
+++.|+.=..+.. .-+.+.+++.|.++..
T Consensus 167 ~~lkIvvd~~~G~~~~~~~~ll~~lG~~v~~ 197 (441)
T cd05805 167 SGLKVVIDYAYGVAGIVLPGLLSRLGCDVVI 197 (441)
T ss_pred cCCeEEEECCCchHHHHHHHHHHHcCCEEEE
Confidence 4566655443332 4556667777766443
No 482
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=22.08 E-value=4e+02 Score=21.01 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=33.7
Q ss_pred CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEE
Q 028030 128 GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQ 192 (215)
Q Consensus 128 ~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~ 192 (215)
++.+|.+..+-.+..++ +.-+++.|..+.+.+.||+.. +| .++- .+|+..
T Consensus 148 ~~k~IL~~Gs~~~l~~~------l~~~vYfdQ~g~Lt~rF~I~~-----VP--avV~--q~g~~l 197 (202)
T TIGR02743 148 NVKWILTGGSVNELEKR------LDSRIYFDQHGKLTQKFGIKH-----VP--ARVS--QEGLRL 197 (202)
T ss_pred CeEEEEeCCCHHHHHHH------hCCceEEcCCchHhhccCcee-----ec--eEEE--ecCCEE
Confidence 47777777553333222 356677898999999999997 89 4443 566654
No 483
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=22.03 E-value=77 Score=23.48 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=38.7
Q ss_pred eeecCCcCCCcEEEEEEcCCC---ChhhHH-HH-H-------HHHHHHHHHHHc--CcEEEEEeCCCH-----HHHHHHH
Q 028030 86 NVSLSKFKGKPVVVYFYPADE---TPGCTK-QA-C-------AFRDSYEKFKKA--GAEVIGISGDDS-----SSHKAFA 146 (215)
Q Consensus 86 ~~~l~~~~gk~~ll~f~~a~~---C~~C~~-~~-~-------~l~~l~~~~~~~--~v~vv~vs~d~~-----~~~~~~~ 146 (215)
.+++.|+.|++.++.|+ +-| |+.|-. +. + .+.++.+...+. .+.-|.++..+- .++-+++
T Consensus 6 ~~~~~d~p~~~~~~vfl-~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~~~~~gVt~SGGEl~~~~l~~ll~~l 84 (147)
T TIGR02826 6 IIVFQEVPNEYSLAFYI-TGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYRSLISCVLFLGGEWNREALLSLLKIF 84 (147)
T ss_pred eEEEeecCCCEEEEEEe-CCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhCCCCCEEEEechhcCHHHHHHHHHHH
Confidence 35677788899999998 544 888832 22 1 123333333332 345566665431 2334444
Q ss_pred HHcCCCeEEEE
Q 028030 147 KKYRLPYTLLS 157 (215)
Q Consensus 147 ~~~~~~~~~~~ 157 (215)
++.+++..+..
T Consensus 85 k~~Gl~i~l~T 95 (147)
T TIGR02826 85 KEKGLKTCLYT 95 (147)
T ss_pred HHCCCCEEEEC
Confidence 56677655443
No 484
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=22.02 E-value=2.3e+02 Score=27.03 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCe
Q 028030 113 QACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPY 153 (215)
Q Consensus 113 ~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~ 153 (215)
..+...+..+++++.|++++-++.|.....+..+++.|+.+
T Consensus 569 ~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~ 609 (741)
T PRK11033 569 LRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDF 609 (741)
T ss_pred CchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCe
Confidence 34455555566666778888788888888888888888764
No 485
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=22.02 E-value=5.2e+02 Score=22.27 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=36.2
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH-HcCCCeEEEEcC
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK-KYRLPYTLLSDE 159 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~-~~~~~~~~~~d~ 159 (215)
|.++.|.-.-.+....-...+.++.+ +.+.|.++|-|++.+.++.+.+.+ ..+.+.|++.|-
T Consensus 17 ~~PI~VQSMtnt~T~Dv~atv~QI~~----L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADI 79 (346)
T TIGR00612 17 DAPIVVQSMTNTDTIDIDSTVAQIRA----LEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADI 79 (346)
T ss_pred CCcEEEEecCCCCchhHHHHHHHHHH----HHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEee
Confidence 35666666522222222333344433 445699999999988766555543 236678887763
No 486
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=22.00 E-value=2.9e+02 Score=19.34 Aligned_cols=7 Identities=14% Similarity=-0.045 Sum_probs=2.6
Q ss_pred HHHHHHc
Q 028030 143 KAFAKKY 149 (215)
Q Consensus 143 ~~~~~~~ 149 (215)
.+++++.
T Consensus 103 ~~~l~~~ 109 (140)
T TIGR01753 103 EERLKEA 109 (140)
T ss_pred HHHHHHC
Confidence 3333333
No 487
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.97 E-value=2.6e+02 Score=20.35 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=18.2
Q ss_pred EEEEEEcCCCChhhHHHHHHHHHHHHHHH
Q 028030 97 VVVYFYPADETPGCTKQACAFRDSYEKFK 125 (215)
Q Consensus 97 ~ll~f~~a~~C~~C~~~~~~l~~l~~~~~ 125 (215)
.|+.++ ..| .|..+...|+++.+.+.
T Consensus 51 aV~i~Y--~p~-~~~~~v~~L~~l~~~~~ 76 (130)
T PF11303_consen 51 AVWITY--DPC-LPPDQVAKLKALAKSCL 76 (130)
T ss_pred cEEEEE--CCC-CCHHHHHHHHHHHhccC
Confidence 344444 334 78999999999988744
No 488
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=21.91 E-value=3.2e+02 Score=24.43 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=36.4
Q ss_pred cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH--HHHHHHHHH
Q 028030 96 PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS--SSHKAFAKK 148 (215)
Q Consensus 96 ~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~--~~~~~~~~~ 148 (215)
..|++=|.|+..|..++.+. .++...+++.|=.|++|+.||+ ....+|++-
T Consensus 469 Ilv~DEWAADQDPaFRR~FY--~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~ 521 (546)
T COG4615 469 ILVLDEWAADQDPAFRREFY--QVLLPLLKEQGKTIFAISHDDHYFIHADRLLEM 521 (546)
T ss_pred eEEeehhhccCChHHHHHHH--HHHhHHHHHhCCeEEEEecCchhhhhHHHHHHH
Confidence 46778897787887776654 3455667777899999999998 344555553
No 489
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=21.82 E-value=1.6e+02 Score=18.46 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=9.8
Q ss_pred CCCChhhHHHHHHHH
Q 028030 104 ADETPGCTKQACAFR 118 (215)
Q Consensus 104 a~~C~~C~~~~~~l~ 118 (215)
..+|+.|++..-.|+
T Consensus 4 ~~~Sp~~~kv~~~l~ 18 (75)
T PF13417_consen 4 FPGSPYSQKVRLALE 18 (75)
T ss_dssp ETTSHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHH
Confidence 577888886644433
No 490
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=21.75 E-value=1.3e+02 Score=24.58 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=26.0
Q ss_pred EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC
Q 028030 98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG 136 (215)
Q Consensus 98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~ 136 (215)
..++..++.|..|... ..++.++..+.|+++++|+-
T Consensus 3 ~~DLHvHSt~Sdg~~~---p~~vv~~A~~~g~~vlAiTD 38 (258)
T COG0613 3 KADLHVHTTASDGGLT---PREVVERAKAKGVDVLAITD 38 (258)
T ss_pred ceeeeEecccCCCCCC---HHHHHHHHHHcCCCEEEECC
Confidence 3455557777777655 66667777788999999974
No 491
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.75 E-value=2.6e+02 Score=18.64 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=34.6
Q ss_pred cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030 127 AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY 195 (215)
Q Consensus 127 ~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~ 195 (215)
.|+.-+++.+++-++..+.+++.|+.+... +. ... .| .. ..++.|++|.++..+
T Consensus 71 ~g~~h~~~~v~d~~~~~~~l~~~G~~~~~~--~~-------~~~---~~-~~--~~~~~DP~G~~iEl~ 124 (125)
T cd08352 71 CGLRHLAFSVEDIEAAVKHLKAKGVEVEPI--RV-------DEF---TG-KR--FTFFYDPDGLPLELY 124 (125)
T ss_pred CCceEEEEEeCCHHHHHHHHHHcCCccccc--cc-------cCC---Cc-eE--EEEEECCCCCEEEec
Confidence 367777888888888888888888764321 10 000 01 22 578899999987643
No 492
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.73 E-value=1.9e+02 Score=20.58 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=25.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH-HHHHHHHHHc
Q 028030 107 TPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS-SSHKAFAKKY 149 (215)
Q Consensus 107 C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~-~~~~~~~~~~ 149 (215)
|+.|... ..+=..+..++++ ++|.-|...-+ ..+-+.+.+-
T Consensus 24 Cp~c~~i-EGlLa~~P~l~~~-ldV~rV~f~RPR~~vi~llGE~ 65 (112)
T PF11287_consen 24 CPHCAAI-EGLLASFPDLRER-LDVRRVDFPRPRQAVIALLGEA 65 (112)
T ss_pred CCchHHH-HhHHhhChhhhhc-ccEEEeCCCCchHHHHHHhChh
Confidence 9999844 4444445666664 88888876544 4555555443
No 493
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=21.48 E-value=4.6e+02 Score=21.49 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=34.0
Q ss_pred CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-----HHHHHHHHHHcCCCeE
Q 028030 94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-----SSSHKAFAKKYRLPYT 154 (215)
Q Consensus 94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-----~~~~~~~~~~~~~~~~ 154 (215)
+++.++.|..-++|+=- .. ..+++..+.++|..+.-|..|. .+.++.|.+..++++.
T Consensus 70 ~~~~vi~l~G~~G~GKT-Tt---~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~ 131 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKT-TT---IAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI 131 (272)
T ss_pred CCCeEEEEECCCCCcHH-HH---HHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE
Confidence 34555555535555521 22 3334444555677888888875 4677889998886643
No 494
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=21.44 E-value=4.4e+02 Score=22.29 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEE
Q 028030 141 SHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQ 192 (215)
Q Consensus 141 ~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~ 192 (215)
.+.+.+++.+..+-+..|.+++ +..++|++|+++
T Consensus 165 ~l~~~v~~~~adlG~a~DgDgD------------------Rl~~vd~~G~~l 198 (355)
T cd03084 165 QLLAVVKAEKADFGVAFDGDAD------------------RLIVVDENGGFL 198 (355)
T ss_pred HHHHHHHhcCCCEEEEEcCCCc------------------eeEEECCCCcee
Confidence 4455555666666666665532 566677776664
No 495
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=21.32 E-value=2.6e+02 Score=18.62 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=26.8
Q ss_pred CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEE
Q 028030 128 GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQL 193 (215)
Q Consensus 128 ~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~ 193 (215)
++..+++.+++-+++.+.++..|+++.- .+... +. -. ..++.|++|.++.
T Consensus 70 ~~~~i~~~v~did~~~~~l~~~G~~~~~--~~~~~-----~~-------~~--~~~~~DpdG~~iE 119 (121)
T cd07233 70 GFGHLAFAVDDVYAACERLEEMGVEVTK--PPGDG-----GM-------KG--IAFIKDPDGYWIE 119 (121)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCCEEee--CCccC-----CC-------ce--EEEEECCCCCEEE
Confidence 3445556566655555555555555432 11100 11 12 5688999998864
No 496
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=21.24 E-value=2.7e+02 Score=18.65 Aligned_cols=49 Identities=27% Similarity=0.381 Sum_probs=32.5
Q ss_pred EEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEE
Q 028030 131 VIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194 (215)
Q Consensus 131 vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~ 194 (215)
.+.+.+++.+++.+.+.+.|.++.. .+... .+| .. ..++.|++|.++..
T Consensus 69 ~~~~~v~did~~~~~l~~~G~~~~~--~~~~~---~~g--------~~--~~~~~DP~G~~ie~ 117 (119)
T cd08359 69 ILNFEVDDVDAEYERLKAEGLPIVL--PLRDE---PWG--------QR--HFIVRDPNGVLIDI 117 (119)
T ss_pred EEEEEECCHHHHHHHHHhcCCCeee--ccccC---CCc--------ce--EEEEECCCCCEEEE
Confidence 5677888888888888888876432 21100 111 22 68899999998764
No 497
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=21.19 E-value=5.4e+02 Score=22.19 Aligned_cols=61 Identities=21% Similarity=0.375 Sum_probs=34.5
Q ss_pred CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH-HcCCCeEEEEcC
Q 028030 95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK-KYRLPYTLLSDE 159 (215)
Q Consensus 95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~-~~~~~~~~~~d~ 159 (215)
.++.|.-.-.+-...-.....++.+| ...|.++|-|++++.++...+.+ +...+.|++.|-
T Consensus 20 aPI~VQSMTnT~T~Dv~aTv~QI~~L----~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDi 81 (361)
T COG0821 20 APIVVQSMTNTDTADVEATVAQIKAL----ERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADI 81 (361)
T ss_pred CceEEEeccCCCcccHHHHHHHHHHH----HHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 45555544133333334444444444 44589999999987765555543 233467777664
No 498
>cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=21.17 E-value=1.1e+02 Score=18.91 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=19.7
Q ss_pred hhHHHHhCCCccCCCCCCccEEEEE
Q 028030 161 NKVRKEWGVPADFFGSLPGRQTYIL 185 (215)
Q Consensus 161 ~~~~~~~g~~~~~~g~~p~~~~~li 185 (215)
+++++.||+.....|.-|.+.++|.
T Consensus 34 Hdla~~~gl~SeS~d~Ep~R~V~v~ 58 (59)
T cd06006 34 HELAKDYGLYSESQDPEPKRSVFVK 58 (59)
T ss_pred HHHHHHcCCeeEecCCCCCcEEEEe
Confidence 4678889999888888887777764
No 499
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.16 E-value=2.5e+02 Score=18.39 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=31.4
Q ss_pred CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEE
Q 028030 128 GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194 (215)
Q Consensus 128 ~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~ 194 (215)
+..-+++.+++-+++.+.+...|.++. ..+. .. .. .. ..++.|++|..+..
T Consensus 67 ~~~~~~~~v~di~~~~~~l~~~g~~~~--~~~~-----~~--~~-----~~--~~~~~DP~G~~ie~ 117 (119)
T cd07263 67 GTPGLVLATDDIDATYEELKARGVEFS--EEPR-----EM--PY-----GT--VAVFRDPDGNLFVL 117 (119)
T ss_pred CceEEEEEehHHHHHHHHHHhCCCEEe--eccc-----cC--CC-----ce--EEEEECCCCCEEEE
Confidence 455677777777777777777775432 2110 00 00 22 78999999998754
No 500
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=21.12 E-value=1.5e+02 Score=25.18 Aligned_cols=43 Identities=26% Similarity=0.522 Sum_probs=31.2
Q ss_pred CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC
Q 028030 93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG 136 (215)
Q Consensus 93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~ 136 (215)
.||++++.|=+.. =+.+...+..+++.+.+..-.|+-+|++..
T Consensus 157 dGKPv~~Iy~p~~-~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGD-IPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECccc-ccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 5899988887433 366777888888877776655677888764
Done!