Query 028031
Match_columns 215
No_of_seqs 118 out of 1237
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 07:55:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umf_A Adenylate kinase; rossm 100.0 4.8E-37 1.6E-41 224.4 22.7 189 14-203 22-214 (217)
2 3sr0_A Adenylate kinase; phosp 100.0 1.1E-34 3.8E-39 211.1 23.1 179 22-202 1-204 (206)
3 3gmt_A Adenylate kinase; ssgci 100.0 1.2E-32 4.2E-37 201.6 20.9 182 20-202 7-229 (230)
4 3tlx_A Adenylate kinase 2; str 100.0 6.1E-30 2.1E-34 191.5 23.0 184 18-201 26-242 (243)
5 3dl0_A Adenylate kinase; phosp 100.0 1.5E-28 5.3E-33 181.0 22.1 181 22-202 1-214 (216)
6 3fb4_A Adenylate kinase; psych 100.0 2.5E-28 8.5E-33 179.8 22.9 181 22-202 1-214 (216)
7 2c95_A Adenylate kinase 1; tra 100.0 3.3E-28 1.1E-32 176.5 22.3 184 18-202 6-193 (196)
8 3be4_A Adenylate kinase; malar 100.0 4.4E-28 1.5E-32 178.6 22.9 181 20-200 4-217 (217)
9 2cdn_A Adenylate kinase; phosp 100.0 9.2E-28 3.1E-32 174.9 24.2 196 1-201 1-200 (201)
10 1aky_A Adenylate kinase; ATP:A 100.0 1.2E-27 4E-32 176.7 24.5 183 20-202 3-219 (220)
11 1qf9_A UMP/CMP kinase, protein 100.0 3.2E-27 1.1E-31 170.9 24.7 184 19-202 4-191 (194)
12 1e4v_A Adenylate kinase; trans 100.0 1.5E-27 5.1E-32 175.4 22.0 178 22-200 1-213 (214)
13 1ak2_A Adenylate kinase isoenz 100.0 4.5E-27 1.5E-31 175.0 24.4 184 18-201 13-229 (233)
14 1ukz_A Uridylate kinase; trans 100.0 1.5E-26 5.2E-31 168.7 25.9 185 16-201 10-200 (203)
15 2bwj_A Adenylate kinase 5; pho 100.0 4.1E-27 1.4E-31 171.1 22.0 181 20-201 11-195 (199)
16 2xb4_A Adenylate kinase; ATP-b 100.0 5.6E-27 1.9E-31 173.3 22.0 179 22-200 1-222 (223)
17 1tev_A UMP-CMP kinase; ploop, 100.0 2.2E-26 7.5E-31 166.7 24.7 182 20-201 2-193 (196)
18 1zd8_A GTP:AMP phosphotransfer 100.0 2.7E-26 9.1E-31 170.2 22.9 185 19-206 5-218 (227)
19 3cm0_A Adenylate kinase; ATP-b 100.0 2.8E-26 9.5E-31 165.0 21.3 179 19-201 2-185 (186)
20 1zak_A Adenylate kinase; ATP:A 99.9 9.9E-26 3.4E-30 166.6 19.8 183 19-204 3-212 (222)
21 2bbw_A Adenylate kinase 4, AK4 99.9 1.3E-20 4.5E-25 141.2 23.5 184 20-206 26-238 (246)
22 3lw7_A Adenylate kinase relate 99.9 3.6E-21 1.2E-25 136.9 18.7 170 22-202 2-176 (179)
23 3t61_A Gluconokinase; PSI-biol 99.8 7.5E-19 2.6E-23 127.8 18.1 161 20-203 17-180 (202)
24 4hlc_A DTMP kinase, thymidylat 99.8 5.8E-19 2E-23 128.2 16.0 167 21-203 2-201 (205)
25 4eaq_A DTMP kinase, thymidylat 99.8 1.1E-18 3.9E-23 129.0 17.7 173 18-203 23-225 (229)
26 3vaa_A Shikimate kinase, SK; s 99.8 4.3E-19 1.5E-23 128.8 13.3 170 15-202 19-195 (199)
27 2pbr_A DTMP kinase, thymidylat 99.8 4.1E-18 1.4E-22 123.0 18.2 163 22-203 1-192 (195)
28 3v9p_A DTMP kinase, thymidylat 99.8 1.8E-19 6.2E-24 132.5 10.9 171 18-201 22-225 (227)
29 2rhm_A Putative kinase; P-loop 99.8 7.9E-19 2.7E-23 126.6 13.3 121 18-144 2-125 (193)
30 2z0h_A DTMP kinase, thymidylat 99.8 8.2E-18 2.8E-22 121.6 18.1 168 22-205 1-194 (197)
31 3kb2_A SPBC2 prophage-derived 99.8 2.1E-18 7.3E-23 122.1 14.8 152 22-205 2-169 (173)
32 4edh_A DTMP kinase, thymidylat 99.8 2.8E-18 9.5E-23 125.3 15.5 173 20-205 5-209 (213)
33 4tmk_A Protein (thymidylate ki 99.8 4.4E-18 1.5E-22 124.1 16.0 172 20-205 2-209 (213)
34 1ly1_A Polynucleotide kinase; 99.8 4.2E-18 1.4E-22 121.4 15.5 162 21-202 2-172 (181)
35 3lv8_A DTMP kinase, thymidylat 99.8 3.5E-19 1.2E-23 131.7 9.9 178 20-207 26-233 (236)
36 1nks_A Adenylate kinase; therm 99.8 2.6E-17 8.7E-22 118.6 18.5 165 22-200 2-193 (194)
37 1kht_A Adenylate kinase; phosp 99.8 5.4E-19 1.9E-23 127.3 9.2 166 21-200 3-191 (192)
38 2wwf_A Thymidilate kinase, put 99.8 3.8E-19 1.3E-23 130.2 8.0 172 18-203 7-200 (212)
39 3hjn_A DTMP kinase, thymidylat 99.8 1.5E-17 5.2E-22 120.1 16.2 166 22-204 1-193 (197)
40 1e6c_A Shikimate kinase; phosp 99.8 9.7E-17 3.3E-21 113.6 19.4 163 22-202 3-170 (173)
41 2plr_A DTMP kinase, probable t 99.8 6.3E-18 2.1E-22 123.6 13.1 171 20-202 3-207 (213)
42 2v54_A DTMP kinase, thymidylat 99.8 1.2E-17 4.3E-22 121.4 14.3 169 19-205 2-193 (204)
43 1jjv_A Dephospho-COA kinase; P 99.8 2.9E-17 1E-21 119.7 16.1 164 22-203 3-197 (206)
44 3trf_A Shikimate kinase, SK; a 99.8 6.7E-17 2.3E-21 115.8 17.5 168 21-205 5-177 (185)
45 2f6r_A COA synthase, bifunctio 99.8 6.4E-17 2.2E-21 123.2 17.2 170 17-204 71-270 (281)
46 1knq_A Gluconate kinase; ALFA/ 99.8 3.6E-16 1.2E-20 111.0 19.9 161 19-201 6-172 (175)
47 4eun_A Thermoresistant glucoki 99.8 2.2E-16 7.4E-21 114.5 18.6 162 18-203 26-194 (200)
48 3a4m_A L-seryl-tRNA(SEC) kinas 99.8 7.7E-17 2.6E-21 121.5 16.8 166 19-205 2-176 (260)
49 2iyv_A Shikimate kinase, SK; t 99.7 5.1E-17 1.7E-21 116.3 14.8 167 21-203 2-169 (184)
50 1nn5_A Similar to deoxythymidy 99.7 9.6E-18 3.3E-22 122.9 10.8 177 16-205 4-203 (215)
51 1vht_A Dephospho-COA kinase; s 99.7 1.7E-16 5.9E-21 116.6 16.6 167 19-203 2-195 (218)
52 2pt5_A Shikimate kinase, SK; a 99.7 4.1E-17 1.4E-21 115.1 12.0 159 22-202 1-163 (168)
53 3ld9_A DTMP kinase, thymidylat 99.7 2.6E-17 8.8E-22 120.5 10.7 170 18-205 18-218 (223)
54 4i1u_A Dephospho-COA kinase; s 99.7 3.5E-16 1.2E-20 113.1 16.0 166 21-203 9-202 (210)
55 3tmk_A Thymidylate kinase; pho 99.7 6.8E-17 2.3E-21 117.9 12.2 176 19-206 3-206 (216)
56 2if2_A Dephospho-COA kinase; a 99.7 9.8E-17 3.4E-21 116.7 13.1 164 22-204 2-193 (204)
57 3ake_A Cytidylate kinase; CMP 99.7 8.2E-16 2.8E-20 112.0 18.0 163 23-201 4-207 (208)
58 2vli_A Antibiotic resistance p 99.7 1.1E-15 3.8E-20 109.1 17.6 162 19-205 3-174 (183)
59 1cke_A CK, MSSA, protein (cyti 99.7 8.1E-16 2.8E-20 113.6 16.9 169 20-201 4-221 (227)
60 2jaq_A Deoxyguanosine kinase; 99.7 2.2E-16 7.5E-21 114.7 13.1 167 22-203 1-201 (205)
61 1uf9_A TT1252 protein; P-loop, 99.7 9.1E-16 3.1E-20 111.3 15.0 167 18-205 5-196 (203)
62 1via_A Shikimate kinase; struc 99.7 3.1E-16 1.1E-20 111.3 12.1 158 22-202 5-166 (175)
63 1ltq_A Polynucleotide kinase; 99.7 4.8E-16 1.6E-20 119.6 14.0 141 21-166 2-146 (301)
64 1zuh_A Shikimate kinase; alpha 99.7 2.6E-16 8.9E-21 111.0 11.2 155 22-200 8-167 (168)
65 1y63_A LMAJ004144AAA protein; 99.7 2.5E-15 8.4E-20 107.5 16.2 114 15-144 4-121 (184)
66 1uj2_A Uridine-cytidine kinase 99.7 2.4E-17 8.1E-22 123.8 5.7 178 16-207 17-238 (252)
67 3r20_A Cytidylate kinase; stru 99.7 1.3E-15 4.4E-20 112.2 14.8 173 19-205 7-230 (233)
68 3fdi_A Uncharacterized protein 99.7 2.6E-15 8.7E-20 108.8 15.6 169 21-203 6-199 (201)
69 4e22_A Cytidylate kinase; P-lo 99.7 2.5E-15 8.6E-20 112.7 14.9 176 19-203 25-245 (252)
70 1kag_A SKI, shikimate kinase I 99.7 1.2E-15 4E-20 108.1 12.3 161 20-201 3-171 (173)
71 2qt1_A Nicotinamide riboside k 99.7 4.8E-16 1.6E-20 113.3 10.0 170 19-202 19-205 (207)
72 3nwj_A ATSK2; P loop, shikimat 99.7 4.1E-15 1.4E-19 110.9 15.0 169 21-204 48-238 (250)
73 3iij_A Coilin-interacting nucl 99.7 1.6E-16 5.3E-21 113.4 6.6 109 19-144 9-117 (180)
74 2qor_A Guanylate kinase; phosp 99.6 1.1E-14 3.9E-19 105.8 15.2 172 17-203 8-197 (204)
75 1q3t_A Cytidylate kinase; nucl 99.6 1.3E-14 4.5E-19 107.8 15.6 171 19-201 14-233 (236)
76 1qhx_A CPT, protein (chloramph 99.6 1.3E-14 4.6E-19 103.0 15.0 164 20-201 2-177 (178)
77 3hdt_A Putative kinase; struct 99.6 6.1E-14 2.1E-18 102.9 18.8 169 20-201 13-217 (223)
78 2grj_A Dephospho-COA kinase; T 99.6 6E-15 2E-19 105.9 11.5 151 20-203 11-187 (192)
79 2yvu_A Probable adenylyl-sulfa 99.6 2.7E-14 9.3E-19 102.2 14.6 164 15-201 7-182 (186)
80 2h92_A Cytidylate kinase; ross 99.6 1.8E-14 6.3E-19 105.7 13.5 168 20-201 2-216 (219)
81 1p5z_B DCK, deoxycytidine kina 99.6 1E-14 3.5E-19 110.1 11.6 78 122-202 173-258 (263)
82 1gvn_B Zeta; postsegregational 99.6 1.3E-14 4.5E-19 110.7 11.2 123 16-144 28-162 (287)
83 3zvl_A Bifunctional polynucleo 99.6 7E-14 2.4E-18 112.0 15.9 103 16-144 253-357 (416)
84 1m7g_A Adenylylsulfate kinase; 99.6 1.9E-14 6.5E-19 105.1 10.1 164 17-202 21-202 (211)
85 2vp4_A Deoxynucleoside kinase; 99.5 1.8E-14 6.2E-19 106.6 8.7 79 121-204 144-226 (230)
86 2pez_A Bifunctional 3'-phospho 99.5 6.5E-13 2.2E-17 94.4 13.6 160 20-201 4-174 (179)
87 3uie_A Adenylyl-sulfate kinase 99.5 6.3E-13 2.2E-17 96.2 13.6 157 18-201 22-193 (200)
88 1ex7_A Guanylate kinase; subst 99.5 1.9E-12 6.5E-17 92.1 14.9 165 23-202 3-184 (186)
89 2ocp_A DGK, deoxyguanosine kin 99.5 3.3E-13 1.1E-17 100.5 9.5 77 122-201 148-232 (241)
90 3tr0_A Guanylate kinase, GMP k 99.4 1.8E-11 6E-16 88.7 17.7 169 17-202 3-186 (205)
91 1x6v_B Bifunctional 3'-phospho 99.4 1.7E-12 5.9E-17 107.8 13.6 161 20-202 51-222 (630)
92 3tau_A Guanylate kinase, GMP k 99.4 1.4E-12 4.7E-17 95.0 10.5 167 19-203 6-189 (208)
93 2p5t_B PEZT; postsegregational 99.4 2.6E-12 9E-17 96.3 11.4 118 17-144 28-157 (253)
94 1gtv_A TMK, thymidylate kinase 99.4 1.6E-14 5.5E-19 105.6 -0.9 168 22-198 1-209 (214)
95 2gks_A Bifunctional SAT/APS ki 99.4 7.6E-12 2.6E-16 103.2 13.4 161 20-201 371-539 (546)
96 2axn_A 6-phosphofructo-2-kinas 99.3 3.7E-12 1.3E-16 104.6 9.9 153 18-171 32-202 (520)
97 1m8p_A Sulfate adenylyltransfe 99.3 2.9E-11 1E-15 100.2 13.0 163 19-202 394-566 (573)
98 2j41_A Guanylate kinase; GMP, 99.3 3E-12 1E-16 92.9 6.3 166 19-202 4-186 (207)
99 1a7j_A Phosphoribulokinase; tr 99.3 3.3E-11 1.1E-15 91.9 10.2 38 20-57 4-46 (290)
100 3a00_A Guanylate kinase, GMP k 99.3 3.1E-11 1.1E-15 86.3 9.5 167 21-202 1-184 (186)
101 3asz_A Uridine kinase; cytidin 99.2 9.1E-11 3.1E-15 85.4 10.9 39 18-56 3-43 (211)
102 3lnc_A Guanylate kinase, GMP k 99.2 7.5E-11 2.6E-15 87.2 10.5 157 14-202 20-208 (231)
103 2jeo_A Uridine-cytidine kinase 99.2 1.1E-10 3.8E-15 87.0 11.4 176 15-205 19-238 (245)
104 1rz3_A Hypothetical protein rb 99.2 1.1E-10 3.8E-15 84.4 8.9 116 17-144 18-164 (201)
105 1bif_A 6-phosphofructo-2-kinas 99.2 1.4E-10 4.9E-15 94.3 10.3 182 18-204 36-246 (469)
106 2bdt_A BH3686; alpha-beta prot 99.2 1.8E-09 6.1E-14 77.1 14.7 114 21-144 2-122 (189)
107 3ch4_B Pmkase, phosphomevalona 99.2 3.5E-10 1.2E-14 80.9 10.7 162 20-203 10-190 (202)
108 1p6x_A Thymidine kinase; P-loo 99.2 3.5E-10 1.2E-14 87.3 11.2 29 19-47 5-33 (334)
109 2ze6_A Isopentenyl transferase 99.1 1.5E-10 5.2E-15 86.7 8.7 120 22-144 2-138 (253)
110 3ney_A 55 kDa erythrocyte memb 99.1 1.2E-09 4.1E-14 78.3 11.2 167 13-206 11-193 (197)
111 1zp6_A Hypothetical protein AT 99.0 1E-09 3.5E-14 78.5 8.8 162 19-201 7-174 (191)
112 1osn_A Thymidine kinase, VZV-T 99.0 1.2E-09 4.2E-14 84.4 9.7 30 18-47 9-39 (341)
113 3cr8_A Sulfate adenylyltranfer 99.0 1.9E-09 6.4E-14 88.9 10.6 163 19-201 367-538 (552)
114 1e2k_A Thymidine kinase; trans 99.0 5.3E-10 1.8E-14 86.2 6.5 28 19-46 2-29 (331)
115 1kgd_A CASK, peripheral plasma 99.0 1.9E-09 6.6E-14 76.5 8.4 27 20-46 4-30 (180)
116 1s96_A Guanylate kinase, GMP k 99.0 3.3E-08 1.1E-12 72.2 15.0 170 16-202 11-197 (219)
117 3c8u_A Fructokinase; YP_612366 99.0 2.6E-09 8.8E-14 77.6 8.6 134 18-161 19-184 (208)
118 3tqc_A Pantothenate kinase; bi 99.0 2.1E-10 7.3E-15 88.3 2.9 121 18-144 89-247 (321)
119 1of1_A Thymidine kinase; trans 99.0 1.4E-09 4.6E-14 85.1 7.2 28 19-46 47-74 (376)
120 1lvg_A Guanylate kinase, GMP k 98.9 1.6E-08 5.5E-13 72.8 12.3 161 20-203 3-188 (198)
121 3a8t_A Adenylate isopentenyltr 98.9 1.3E-09 4.6E-14 83.9 6.4 36 20-55 39-74 (339)
122 3czq_A Putative polyphosphate 98.9 2E-08 6.7E-13 76.1 10.5 161 19-203 84-279 (304)
123 1sq5_A Pantothenate kinase; P- 98.9 3.6E-08 1.2E-12 75.8 11.9 38 18-55 77-121 (308)
124 4gp7_A Metallophosphoesterase; 98.8 4.5E-07 1.5E-11 63.6 15.7 138 17-170 5-145 (171)
125 3crm_A TRNA delta(2)-isopenten 98.6 2.1E-08 7.1E-13 77.1 3.2 36 20-55 4-39 (323)
126 3d3q_A TRNA delta(2)-isopenten 98.5 2.7E-08 9.3E-13 76.9 2.8 35 21-55 7-41 (340)
127 3foz_A TRNA delta(2)-isopenten 98.5 8.3E-08 2.9E-12 73.0 4.0 36 19-54 8-43 (316)
128 3czp_A Putative polyphosphate 98.5 3.4E-07 1.2E-11 74.4 7.8 104 19-144 41-168 (500)
129 3exa_A TRNA delta(2)-isopenten 98.5 6.5E-08 2.2E-12 73.8 3.2 36 20-55 2-37 (322)
130 1kjw_A Postsynaptic density pr 98.5 1.9E-07 6.3E-12 71.2 5.6 163 18-203 102-282 (295)
131 1z6g_A Guanylate kinase; struc 98.5 1.2E-05 4E-10 58.6 15.0 172 15-203 17-208 (218)
132 3czp_A Putative polyphosphate 98.4 8.4E-07 2.9E-11 72.1 8.5 159 19-201 298-491 (500)
133 3tvt_A Disks large 1 tumor sup 98.3 7.4E-07 2.5E-11 67.7 5.6 165 18-205 97-279 (292)
134 1dek_A Deoxynucleoside monopho 98.3 6.4E-07 2.2E-11 66.2 4.9 40 22-61 2-41 (241)
135 3eph_A TRNA isopentenyltransfe 98.3 5.3E-07 1.8E-11 71.1 3.8 34 21-54 2-35 (409)
136 3rhf_A Putative polyphosphate 98.2 1.9E-05 6.5E-10 59.1 11.5 161 19-203 73-268 (289)
137 2xkx_A Disks large homolog 4; 98.2 1.8E-05 6.2E-10 67.6 12.2 165 19-206 529-711 (721)
138 3t15_A Ribulose bisphosphate c 98.2 1.3E-06 4.5E-11 66.6 4.6 37 19-55 34-72 (293)
139 3ec2_A DNA replication protein 98.2 2.4E-06 8.1E-11 60.3 5.2 42 17-58 34-81 (180)
140 1odf_A YGR205W, hypothetical 3 98.2 1.6E-06 5.4E-11 66.0 4.4 40 17-56 27-74 (290)
141 1g8f_A Sulfate adenylyltransfe 98.1 1.1E-06 3.8E-11 71.7 3.4 35 20-54 394-435 (511)
142 2qmh_A HPR kinase/phosphorylas 98.1 1.9E-06 6.6E-11 61.3 3.6 33 20-53 33-65 (205)
143 4b4t_K 26S protease regulatory 98.1 3.8E-06 1.3E-10 67.1 5.1 34 18-51 203-236 (428)
144 4b4t_M 26S protease regulatory 98.1 3.8E-06 1.3E-10 67.2 5.1 34 18-51 212-245 (434)
145 1ye8_A Protein THEP1, hypothet 98.0 2.8E-06 9.5E-11 59.9 3.5 26 22-47 1-26 (178)
146 4b4t_L 26S protease subunit RP 98.0 4.4E-06 1.5E-10 66.9 5.1 35 17-51 211-245 (437)
147 4b4t_J 26S protease regulatory 98.0 4.3E-06 1.5E-10 66.1 4.6 34 18-51 179-212 (405)
148 2qz4_A Paraplegin; AAA+, SPG7, 98.0 6.6E-06 2.3E-10 61.4 5.1 32 19-50 37-68 (262)
149 1lv7_A FTSH; alpha/beta domain 98.0 7.1E-06 2.4E-10 61.2 5.0 31 21-51 45-75 (257)
150 2x8a_A Nuclear valosin-contain 98.0 6.2E-06 2.1E-10 62.2 4.7 27 24-50 47-73 (274)
151 3h4m_A Proteasome-activating n 98.0 7E-06 2.4E-10 62.1 4.8 33 19-51 49-81 (285)
152 4b4t_H 26S protease regulatory 98.0 6.2E-06 2.1E-10 66.1 4.6 36 16-51 238-273 (467)
153 3cf0_A Transitional endoplasmi 98.0 7.2E-06 2.4E-10 62.8 4.8 40 19-58 47-88 (301)
154 3aez_A Pantothenate kinase; tr 98.0 6.5E-06 2.2E-10 63.3 4.6 28 18-45 87-114 (312)
155 1znw_A Guanylate kinase, GMP k 98.0 5.3E-06 1.8E-10 59.9 3.7 31 16-46 15-45 (207)
156 3b9p_A CG5977-PA, isoform A; A 98.0 8.2E-06 2.8E-10 62.2 4.9 31 20-50 53-83 (297)
157 4b4t_I 26S protease regulatory 97.9 9.5E-06 3.3E-10 64.5 5.1 35 17-51 212-246 (437)
158 2ga8_A Hypothetical 39.9 kDa p 97.9 1.9E-06 6.6E-11 66.9 1.1 35 15-49 18-52 (359)
159 1d2n_A N-ethylmaleimide-sensit 97.9 1E-05 3.5E-10 60.9 4.9 34 18-51 61-94 (272)
160 1tue_A Replication protein E1; 97.9 8.2E-06 2.8E-10 58.4 3.8 30 21-50 58-87 (212)
161 1svm_A Large T antigen; AAA+ f 97.9 1.1E-05 3.6E-10 63.6 4.6 35 17-51 165-199 (377)
162 2w58_A DNAI, primosome compone 97.9 2E-05 7E-10 56.4 5.9 38 22-59 55-97 (202)
163 1xjc_A MOBB protein homolog; s 97.9 9.8E-06 3.4E-10 56.4 3.8 25 21-45 4-28 (169)
164 1g41_A Heat shock protein HSLU 97.9 6.6E-06 2.3E-10 66.0 3.3 33 20-52 49-81 (444)
165 3eie_A Vacuolar protein sortin 97.9 1.4E-05 4.8E-10 61.7 5.1 31 21-51 51-81 (322)
166 1jbk_A CLPB protein; beta barr 97.9 1.1E-05 3.7E-10 56.9 4.1 27 19-45 41-67 (195)
167 1htw_A HI0065; nucleotide-bind 97.9 1E-05 3.5E-10 55.8 3.7 30 16-45 28-57 (158)
168 1in4_A RUVB, holliday junction 97.9 9.9E-06 3.4E-10 62.9 4.0 28 21-48 51-78 (334)
169 3hws_A ATP-dependent CLP prote 97.8 1.3E-05 4.4E-10 63.0 4.5 32 20-51 50-81 (363)
170 2p65_A Hypothetical protein PF 97.8 1.2E-05 4.2E-10 56.5 3.9 27 19-45 41-67 (187)
171 1ixz_A ATP-dependent metallopr 97.8 1.4E-05 4.9E-10 59.4 4.5 27 23-49 51-77 (254)
172 3kfv_A Tight junction protein 97.8 0.00056 1.9E-08 52.1 13.2 149 18-206 142-293 (308)
173 1xwi_A SKD1 protein; VPS4B, AA 97.8 1.7E-05 5.9E-10 61.2 4.9 31 20-50 44-75 (322)
174 3syl_A Protein CBBX; photosynt 97.8 1.4E-05 4.8E-10 61.1 4.3 27 19-45 65-91 (309)
175 1np6_A Molybdopterin-guanine d 97.8 1.6E-05 5.6E-10 55.7 4.0 26 20-45 5-30 (174)
176 1ofh_A ATP-dependent HSL prote 97.8 1.6E-05 5.5E-10 60.7 4.4 31 20-50 49-79 (310)
177 2kjq_A DNAA-related protein; s 97.8 1.4E-05 4.8E-10 54.6 3.5 26 20-45 35-60 (149)
178 2qp9_X Vacuolar protein sortin 97.8 2.1E-05 7.1E-10 61.6 4.7 31 21-51 84-114 (355)
179 1l8q_A Chromosomal replication 97.8 3.3E-05 1.1E-09 59.6 5.8 38 20-57 36-78 (324)
180 3b9q_A Chloroplast SRP recepto 97.8 2.2E-05 7.4E-10 60.1 4.6 30 16-45 95-124 (302)
181 3bos_A Putative DNA replicatio 97.8 1.8E-05 6.3E-10 58.0 4.1 35 20-54 51-90 (242)
182 1vma_A Cell division protein F 97.8 2.3E-05 7.8E-10 60.0 4.6 29 17-45 100-128 (306)
183 3d8b_A Fidgetin-like protein 1 97.8 2.3E-05 7.9E-10 61.4 4.7 32 19-50 115-146 (357)
184 1iy2_A ATP-dependent metallopr 97.8 2.4E-05 8.3E-10 59.1 4.5 27 24-50 76-102 (278)
185 1rj9_A FTSY, signal recognitio 97.8 2.3E-05 7.7E-10 60.0 4.3 26 20-45 101-126 (304)
186 3cf2_A TER ATPase, transitiona 97.8 2.7E-05 9.3E-10 66.8 5.2 39 13-51 230-268 (806)
187 1um8_A ATP-dependent CLP prote 97.7 2.4E-05 8.1E-10 61.7 4.5 31 21-51 72-102 (376)
188 1sxj_A Activator 1 95 kDa subu 97.7 2.6E-05 8.8E-10 64.2 4.7 32 20-51 76-107 (516)
189 1c9k_A COBU, adenosylcobinamid 97.7 1.5E-05 5.3E-10 55.9 2.8 24 23-47 1-24 (180)
190 3e70_C DPA, signal recognition 97.7 2.9E-05 9.8E-10 60.1 4.5 28 18-45 126-153 (328)
191 2og2_A Putative signal recogni 97.7 3.1E-05 1E-09 60.6 4.6 30 16-45 152-181 (359)
192 2r62_A Cell division protease 97.7 9.4E-06 3.2E-10 60.9 1.7 31 21-51 44-74 (268)
193 3pfi_A Holliday junction ATP-d 97.7 2.9E-05 1E-09 60.2 4.5 31 21-51 55-85 (338)
194 3tif_A Uncharacterized ABC tra 97.7 1.4E-05 4.9E-10 58.9 2.6 31 15-45 25-55 (235)
195 2v9p_A Replication protein E1; 97.7 2.5E-05 8.6E-10 59.7 3.7 34 16-49 121-154 (305)
196 2ce7_A Cell division protein F 97.7 4.1E-05 1.4E-09 62.1 4.9 31 21-51 49-79 (476)
197 2ehv_A Hypothetical protein PH 97.7 2.6E-05 9E-10 57.6 3.5 24 19-42 28-51 (251)
198 2eyu_A Twitching motility prot 97.7 3.7E-05 1.3E-09 57.6 4.3 28 18-45 22-49 (261)
199 2c9o_A RUVB-like 1; hexameric 97.7 3.8E-05 1.3E-09 62.2 4.7 31 21-51 63-95 (456)
200 2yhs_A FTSY, cell division pro 97.7 4E-05 1.4E-09 62.1 4.7 30 16-45 288-317 (503)
201 1njg_A DNA polymerase III subu 97.7 3.3E-05 1.1E-09 56.5 3.9 26 21-46 45-70 (250)
202 4a74_A DNA repair and recombin 97.6 3.1E-05 1.1E-09 56.5 3.6 26 20-45 24-49 (231)
203 2i3b_A HCR-ntpase, human cance 97.6 3.2E-05 1.1E-09 55.0 3.5 24 22-45 2-25 (189)
204 3vfd_A Spastin; ATPase, microt 97.6 5.1E-05 1.7E-09 60.2 4.9 31 21-51 148-178 (389)
205 3shw_A Tight junction protein 97.6 0.0003 1E-08 56.8 9.3 151 18-203 221-373 (468)
206 2pcj_A ABC transporter, lipopr 97.6 1.7E-05 6E-10 58.0 2.0 30 16-45 25-54 (224)
207 2a5j_A RAS-related protein RAB 97.6 4E-05 1.4E-09 54.3 3.8 44 1-44 1-44 (191)
208 2cbz_A Multidrug resistance-as 97.6 2.4E-05 8.1E-10 57.8 2.6 30 16-45 26-55 (237)
209 3n70_A Transport activator; si 97.6 3.5E-05 1.2E-09 52.3 3.2 24 22-45 25-48 (145)
210 2v1u_A Cell division control p 97.6 4.5E-05 1.6E-09 59.9 4.2 28 18-45 41-68 (387)
211 2chg_A Replication factor C sm 97.6 3.5E-05 1.2E-09 55.6 3.2 25 21-45 38-62 (226)
212 2zan_A Vacuolar protein sortin 97.6 5.7E-05 1.9E-09 61.0 4.7 37 20-56 166-205 (444)
213 2onk_A Molybdate/tungstate ABC 97.6 3E-05 1E-09 57.3 2.9 29 16-45 20-48 (240)
214 3pvs_A Replication-associated 97.6 6.3E-05 2.2E-09 60.7 4.9 32 20-51 49-80 (447)
215 1b0u_A Histidine permease; ABC 97.6 2.7E-05 9.1E-10 58.4 2.5 31 15-45 26-56 (262)
216 3te6_A Regulatory protein SIR3 97.6 4E-05 1.4E-09 58.9 3.5 30 16-45 40-69 (318)
217 3uk6_A RUVB-like 2; hexameric 97.6 4.4E-05 1.5E-09 59.8 3.9 27 21-47 70-96 (368)
218 2qby_B CDC6 homolog 3, cell di 97.6 6.4E-05 2.2E-09 59.2 4.8 27 19-45 43-69 (384)
219 1mv5_A LMRA, multidrug resista 97.6 2.9E-05 1E-09 57.5 2.6 31 15-45 22-52 (243)
220 3gfo_A Cobalt import ATP-bindi 97.6 2.2E-05 7.5E-10 59.2 2.0 30 16-45 29-58 (275)
221 2qby_A CDC6 homolog 1, cell di 97.6 5.9E-05 2E-09 59.2 4.5 27 19-45 43-69 (386)
222 2dhr_A FTSH; AAA+ protein, hex 97.6 6.2E-05 2.1E-09 61.4 4.7 30 21-50 64-93 (499)
223 2w0m_A SSO2452; RECA, SSPF, un 97.6 5.3E-05 1.8E-09 55.3 4.0 26 20-45 22-47 (235)
224 3u61_B DNA polymerase accessor 97.6 5.6E-05 1.9E-09 58.3 4.2 32 20-51 47-78 (324)
225 2cvh_A DNA repair and recombin 97.6 4.9E-05 1.7E-09 55.0 3.7 28 19-46 18-45 (220)
226 2olj_A Amino acid ABC transpor 97.6 3E-05 1E-09 58.1 2.5 30 16-45 45-74 (263)
227 4g1u_C Hemin import ATP-bindin 97.6 2.5E-05 8.5E-10 58.7 2.1 30 16-45 32-61 (266)
228 2f1r_A Molybdopterin-guanine d 97.6 2.1E-05 7.3E-10 55.0 1.6 24 22-45 3-26 (171)
229 2orw_A Thymidine kinase; TMTK, 97.6 5.9E-05 2E-09 53.4 3.9 25 21-45 3-27 (184)
230 1g6h_A High-affinity branched- 97.6 3E-05 1E-09 58.0 2.4 30 16-45 28-57 (257)
231 2r2a_A Uncharacterized protein 97.6 5.3E-05 1.8E-09 54.3 3.6 26 19-44 3-28 (199)
232 4fcw_A Chaperone protein CLPB; 97.6 6.4E-05 2.2E-09 57.5 4.4 24 22-45 48-71 (311)
233 2zu0_C Probable ATP-dependent 97.6 4E-05 1.4E-09 57.6 3.0 29 16-44 41-69 (267)
234 1vpl_A ABC transporter, ATP-bi 97.5 3.3E-05 1.1E-09 57.6 2.5 30 16-45 36-65 (256)
235 2ff7_A Alpha-hemolysin translo 97.5 2.7E-05 9.1E-10 57.8 2.0 30 16-45 30-59 (247)
236 3b85_A Phosphate starvation-in 97.5 4.1E-05 1.4E-09 55.3 2.9 25 20-44 21-45 (208)
237 3m6a_A ATP-dependent protease 97.5 7.6E-05 2.6E-09 61.8 4.9 31 20-50 107-137 (543)
238 2d2e_A SUFC protein; ABC-ATPas 97.5 3.4E-05 1.2E-09 57.4 2.6 29 16-44 24-52 (250)
239 2ixe_A Antigen peptide transpo 97.5 3.3E-05 1.1E-09 58.1 2.6 30 16-45 40-69 (271)
240 1ypw_A Transitional endoplasmi 97.5 7.8E-05 2.7E-09 64.5 5.1 38 14-51 231-268 (806)
241 1zu4_A FTSY; GTPase, signal re 97.5 7.9E-05 2.7E-09 57.4 4.6 30 16-45 100-129 (320)
242 1ji0_A ABC transporter; ATP bi 97.5 2.8E-05 9.7E-10 57.5 2.0 30 16-45 27-56 (240)
243 2ghi_A Transport protein; mult 97.5 3.5E-05 1.2E-09 57.7 2.6 30 16-45 41-70 (260)
244 2px0_A Flagellar biosynthesis 97.5 6.4E-05 2.2E-09 57.3 4.0 27 19-45 103-129 (296)
245 1sgw_A Putative ABC transporte 97.5 2.4E-05 8.3E-10 56.7 1.6 29 17-45 31-59 (214)
246 1hqc_A RUVB; extended AAA-ATPa 97.5 5.3E-05 1.8E-09 58.3 3.6 30 21-50 38-67 (324)
247 2qm8_A GTPase/ATPase; G protei 97.5 8E-05 2.7E-09 57.9 4.5 30 16-45 50-79 (337)
248 2pze_A Cystic fibrosis transme 97.5 3E-05 1E-09 56.9 2.0 29 17-45 30-58 (229)
249 3oes_A GTPase rhebl1; small GT 97.5 5.8E-05 2E-09 53.9 3.4 34 11-44 14-47 (201)
250 3kl4_A SRP54, signal recogniti 97.5 6.9E-05 2.3E-09 60.0 4.0 27 19-45 95-121 (433)
251 1oix_A RAS-related protein RAB 97.5 5.9E-05 2E-09 53.5 3.3 25 21-45 29-53 (191)
252 2yz2_A Putative ABC transporte 97.5 4.1E-05 1.4E-09 57.5 2.6 31 15-45 27-57 (266)
253 3tqf_A HPR(Ser) kinase; transf 97.5 6.5E-05 2.2E-09 52.2 3.3 31 20-51 15-45 (181)
254 2h17_A ADP-ribosylation factor 97.5 5E-05 1.7E-09 53.3 2.8 31 14-44 14-44 (181)
255 2qi9_C Vitamin B12 import ATP- 97.5 3.7E-05 1.3E-09 57.1 2.0 30 16-45 21-50 (249)
256 3dm5_A SRP54, signal recogniti 97.5 8E-05 2.7E-09 59.7 4.1 26 20-45 99-124 (443)
257 2z4s_A Chromosomal replication 97.5 0.00016 5.3E-09 58.3 5.7 37 21-57 130-173 (440)
258 2ihy_A ABC transporter, ATP-bi 97.5 3.8E-05 1.3E-09 58.0 2.0 29 17-45 43-71 (279)
259 3fvq_A Fe(3+) IONS import ATP- 97.5 5.7E-05 2E-09 59.0 3.0 31 15-45 24-54 (359)
260 3hu3_A Transitional endoplasmi 97.5 0.00011 3.7E-09 59.9 4.8 37 19-55 236-274 (489)
261 1fnn_A CDC6P, cell division co 97.5 0.00011 3.7E-09 57.9 4.6 23 23-45 46-68 (389)
262 1n0w_A DNA repair protein RAD5 97.5 7.5E-05 2.6E-09 54.9 3.5 25 20-44 23-47 (243)
263 2qgz_A Helicase loader, putati 97.5 0.00018 6E-09 55.2 5.6 39 21-59 152-196 (308)
264 3con_A GTPase NRAS; structural 97.5 6.9E-05 2.4E-09 52.9 3.1 32 13-44 13-44 (190)
265 2nq2_C Hypothetical ABC transp 97.5 4.1E-05 1.4E-09 57.0 2.0 30 16-45 26-55 (253)
266 1cr0_A DNA primase/helicase; R 97.5 9.5E-05 3.2E-09 56.3 4.0 28 18-45 32-59 (296)
267 2r44_A Uncharacterized protein 97.5 5.6E-05 1.9E-09 58.5 2.8 28 22-49 47-74 (331)
268 1zd9_A ADP-ribosylation factor 97.5 7.4E-05 2.5E-09 52.8 3.2 33 11-43 12-44 (188)
269 3tsz_A Tight junction protein 97.4 0.00039 1.3E-08 55.0 7.5 151 18-203 229-381 (391)
270 1sxj_D Activator 1 41 kDa subu 97.4 9.6E-05 3.3E-09 57.5 4.0 25 22-46 59-83 (353)
271 1z06_A RAS-related protein RAB 97.4 9E-05 3.1E-09 52.3 3.4 42 1-43 1-42 (189)
272 2ewv_A Twitching motility prot 97.4 0.00011 3.7E-09 57.9 4.1 28 18-45 133-160 (372)
273 3jvv_A Twitching mobility prot 97.4 0.00012 4.1E-09 57.3 4.3 26 20-45 122-147 (356)
274 2yyz_A Sugar ABC transporter, 97.4 7.3E-05 2.5E-09 58.4 3.1 31 15-45 23-53 (359)
275 3sop_A Neuronal-specific septi 97.4 9.9E-05 3.4E-09 55.5 3.7 24 22-45 3-26 (270)
276 2zts_A Putative uncharacterize 97.4 0.002 6.9E-08 47.3 10.8 25 20-44 29-53 (251)
277 3rlf_A Maltose/maltodextrin im 97.4 7.5E-05 2.6E-09 58.7 3.0 30 16-45 24-53 (381)
278 3p32_A Probable GTPase RV1496/ 97.4 0.00012 4.3E-09 57.2 4.3 27 19-45 77-103 (355)
279 2dr3_A UPF0273 protein PH0284; 97.4 0.00011 3.9E-09 54.0 3.9 26 20-45 22-47 (247)
280 3tui_C Methionine import ATP-b 97.4 7.9E-05 2.7E-09 58.3 3.0 31 15-45 48-78 (366)
281 2it1_A 362AA long hypothetical 97.4 7.9E-05 2.7E-09 58.3 3.0 31 15-45 23-53 (362)
282 2gf9_A RAS-related protein RAB 97.4 0.00011 3.8E-09 51.8 3.6 44 1-44 1-45 (189)
283 1svi_A GTP-binding protein YSX 97.4 0.00012 4.3E-09 51.7 3.9 32 13-44 15-46 (195)
284 3co5_A Putative two-component 97.4 2.7E-05 9.2E-10 52.7 0.3 25 22-46 28-52 (143)
285 2b8t_A Thymidine kinase; deoxy 97.4 0.00014 5E-09 52.9 4.2 28 18-45 9-36 (223)
286 1sxj_C Activator 1 40 kDa subu 97.4 8.6E-05 2.9E-09 57.7 3.1 23 24-46 49-71 (340)
287 2www_A Methylmalonic aciduria 97.4 0.00013 4.5E-09 56.9 4.2 26 20-45 73-98 (349)
288 1v43_A Sugar-binding transport 97.4 8.4E-05 2.9E-09 58.4 3.0 31 15-45 31-61 (372)
289 1u0j_A DNA replication protein 97.4 0.00014 4.9E-09 54.2 4.2 29 19-47 102-130 (267)
290 2wsm_A Hydrogenase expression/ 97.4 0.00014 5E-09 52.6 4.1 27 19-45 28-54 (221)
291 2bbs_A Cystic fibrosis transme 97.4 6.9E-05 2.4E-09 56.9 2.5 28 18-45 61-88 (290)
292 1z0f_A RAB14, member RAS oncog 97.4 0.00011 3.7E-09 51.1 3.3 27 19-45 13-39 (179)
293 1z47_A CYSA, putative ABC-tran 97.4 7.2E-05 2.5E-09 58.4 2.6 30 16-45 36-65 (355)
294 1sxj_E Activator 1 40 kDa subu 97.4 0.00011 3.8E-09 57.2 3.7 24 21-45 37-60 (354)
295 3pxg_A Negative regulator of g 97.4 0.00011 3.8E-09 59.6 3.8 26 20-45 200-225 (468)
296 3ihw_A Centg3; RAS, centaurin, 97.4 0.00014 4.9E-09 51.2 3.9 30 15-44 14-43 (184)
297 1gwn_A RHO-related GTP-binding 97.4 0.00012 4E-09 52.7 3.4 32 13-44 20-51 (205)
298 1pui_A ENGB, probable GTP-bind 97.4 7.4E-05 2.5E-09 53.6 2.3 28 16-43 21-48 (210)
299 2v3c_C SRP54, signal recogniti 97.4 0.00012 4E-09 58.8 3.7 27 19-45 97-123 (432)
300 1nij_A Hypothetical protein YJ 97.4 0.0001 3.6E-09 56.7 3.2 25 20-44 3-27 (318)
301 2pjz_A Hypothetical protein ST 97.4 7.8E-05 2.7E-09 55.8 2.4 29 15-44 25-53 (263)
302 2wjg_A FEOB, ferrous iron tran 97.3 0.00014 4.9E-09 51.1 3.7 25 20-44 6-30 (188)
303 3cf2_A TER ATPase, transitiona 97.3 0.00015 5.3E-09 62.3 4.4 35 18-52 508-542 (806)
304 1lw7_A Transcriptional regulat 97.3 0.00011 3.6E-09 57.8 3.2 28 21-48 170-197 (365)
305 1jr3_A DNA polymerase III subu 97.3 0.00015 5E-09 56.9 4.0 27 21-47 38-64 (373)
306 1p9r_A General secretion pathw 97.3 0.00017 5.8E-09 57.6 4.4 28 19-46 165-192 (418)
307 3nh6_A ATP-binding cassette SU 97.3 4.9E-05 1.7E-09 58.2 1.2 28 18-45 77-104 (306)
308 1nlf_A Regulatory protein REPA 97.3 0.00012 4.3E-09 55.2 3.4 26 20-45 29-54 (279)
309 1upt_A ARL1, ADP-ribosylation 97.3 0.00019 6.4E-09 49.5 4.1 26 18-43 4-29 (171)
310 2qen_A Walker-type ATPase; unk 97.3 0.00018 6.3E-09 55.6 4.5 33 22-54 32-64 (350)
311 2wji_A Ferrous iron transport 97.3 0.00013 4.6E-09 50.3 3.3 23 21-43 3-25 (165)
312 2gza_A Type IV secretion syste 97.3 9.6E-05 3.3E-09 58.0 2.8 27 20-46 174-200 (361)
313 1g29_1 MALK, maltose transport 97.3 9.1E-05 3.1E-09 58.2 2.6 30 16-45 24-53 (372)
314 2hf9_A Probable hydrogenase ni 97.3 0.00019 6.4E-09 52.2 4.1 27 19-45 36-62 (226)
315 3c5c_A RAS-like protein 12; GD 97.3 0.00015 5.1E-09 51.2 3.4 32 13-44 13-44 (187)
316 1moz_A ARL1, ADP-ribosylation 97.3 7.6E-05 2.6E-09 52.2 1.9 24 19-42 16-39 (183)
317 3d31_A Sulfate/molybdate ABC t 97.3 6.7E-05 2.3E-09 58.4 1.7 31 15-45 20-50 (348)
318 2h57_A ADP-ribosylation factor 97.3 0.00011 3.9E-09 51.8 2.7 33 13-45 13-45 (190)
319 2fn4_A P23, RAS-related protei 97.3 0.00019 6.4E-09 50.0 3.8 27 18-44 6-32 (181)
320 2f9l_A RAB11B, member RAS onco 97.3 0.00017 5.7E-09 51.4 3.6 24 21-44 5-28 (199)
321 2atv_A RERG, RAS-like estrogen 97.3 0.00019 6.4E-09 51.0 3.8 31 14-44 21-51 (196)
322 3gd7_A Fusion complex of cysti 97.3 0.00012 4E-09 57.9 3.0 28 17-44 43-70 (390)
323 1ky3_A GTP-binding protein YPT 97.3 0.00016 5.6E-09 50.3 3.4 26 19-44 6-31 (182)
324 1xx6_A Thymidine kinase; NESG, 97.3 0.00028 9.6E-09 50.2 4.7 28 18-45 5-32 (191)
325 2chq_A Replication factor C sm 97.3 0.00019 6.6E-09 54.9 4.1 27 19-45 36-62 (319)
326 1z2a_A RAS-related protein RAB 97.3 0.00017 5.8E-09 49.5 3.5 25 20-44 4-28 (168)
327 3pqc_A Probable GTP-binding pr 97.3 0.00022 7.4E-09 50.3 4.1 31 14-44 16-46 (195)
328 2p5s_A RAS and EF-hand domain 97.3 0.00018 6.3E-09 51.2 3.7 32 13-44 20-51 (199)
329 1g8p_A Magnesium-chelatase 38 97.3 8.8E-05 3E-09 57.7 2.1 23 24-46 48-70 (350)
330 2bjv_A PSP operon transcriptio 97.3 0.00014 4.8E-09 54.4 3.1 33 21-53 29-66 (265)
331 1iqp_A RFCS; clamp loader, ext 97.3 0.00021 7.1E-09 54.9 4.1 27 20-46 45-71 (327)
332 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00017 5.8E-09 55.3 3.5 32 21-52 123-156 (331)
333 3kta_A Chromosome segregation 97.3 0.00018 6E-09 50.6 3.3 24 23-46 28-51 (182)
334 2p67_A LAO/AO transport system 97.3 0.00024 8.3E-09 55.2 4.4 29 17-45 52-80 (341)
335 1ksh_A ARF-like protein 2; sma 97.3 0.0002 6.7E-09 50.3 3.5 26 19-44 16-41 (186)
336 2ged_A SR-beta, signal recogni 97.3 0.00023 7.9E-09 50.2 3.9 26 19-44 46-71 (193)
337 1pzn_A RAD51, DNA repair and r 97.2 0.00019 6.3E-09 56.1 3.6 26 20-45 130-155 (349)
338 1kao_A RAP2A; GTP-binding prot 97.2 0.0002 7E-09 49.0 3.4 24 21-44 3-26 (167)
339 2j37_W Signal recognition part 97.2 0.00025 8.4E-09 57.9 4.4 27 19-45 99-125 (504)
340 2hxs_A RAB-26, RAS-related pro 97.2 0.00023 7.9E-09 49.4 3.8 26 19-44 4-29 (178)
341 3hr8_A Protein RECA; alpha and 97.2 0.00023 7.8E-09 55.6 4.0 26 20-45 60-85 (356)
342 3bwd_D RAC-like GTP-binding pr 97.2 0.00023 7.9E-09 49.6 3.7 28 17-44 4-31 (182)
343 3t5g_A GTP-binding protein RHE 97.2 0.00015 5.1E-09 50.6 2.7 25 19-43 4-28 (181)
344 3clv_A RAB5 protein, putative; 97.2 0.00029 9.8E-09 50.0 4.3 26 19-44 5-30 (208)
345 2gj8_A MNME, tRNA modification 97.2 0.00021 7.2E-09 49.7 3.4 25 20-44 3-27 (172)
346 1oxx_K GLCV, glucose, ABC tran 97.2 7.1E-05 2.4E-09 58.5 1.0 31 15-45 25-55 (353)
347 4bas_A ADP-ribosylation factor 97.2 0.00019 6.5E-09 50.9 3.2 31 13-43 9-39 (199)
348 2b6h_A ADP-ribosylation factor 97.2 0.00028 9.6E-09 50.0 4.0 30 14-43 22-51 (192)
349 2lkc_A Translation initiation 97.2 0.00024 8.3E-09 49.3 3.6 25 19-43 6-30 (178)
350 2dyk_A GTP-binding protein; GT 97.2 0.00025 8.4E-09 48.4 3.5 24 22-45 2-25 (161)
351 2ce2_X GTPase HRAS; signaling 97.2 0.00023 7.8E-09 48.6 3.4 23 22-44 4-26 (166)
352 1nrj_B SR-beta, signal recogni 97.2 0.00027 9.3E-09 51.0 3.9 27 19-45 10-36 (218)
353 2npi_A Protein CLP1; CLP1-PCF1 97.2 0.00014 4.6E-09 58.9 2.4 28 18-45 135-162 (460)
354 2xxa_A Signal recognition part 97.2 0.00033 1.1E-08 56.2 4.6 27 19-45 98-124 (433)
355 2nzj_A GTP-binding protein REM 97.2 0.00025 8.5E-09 49.1 3.4 24 20-43 3-26 (175)
356 1yrb_A ATP(GTP)binding protein 97.2 0.0004 1.4E-08 51.7 4.8 28 18-45 11-38 (262)
357 1u8z_A RAS-related protein RAL 97.2 0.00026 8.9E-09 48.5 3.5 24 21-44 4-27 (168)
358 1j8m_F SRP54, signal recogniti 97.2 0.00032 1.1E-08 53.4 4.2 25 21-45 98-122 (297)
359 3lxw_A GTPase IMAP family memb 97.2 0.00023 7.8E-09 52.8 3.3 31 13-43 13-43 (247)
360 2q3h_A RAS homolog gene family 97.2 0.00026 8.9E-09 50.3 3.5 26 18-43 17-42 (201)
361 2qag_B Septin-6, protein NEDD5 97.2 0.0002 7E-09 57.1 3.1 27 18-44 37-65 (427)
362 2iwr_A Centaurin gamma 1; ANK 97.2 0.00024 8.1E-09 49.4 3.2 26 19-44 5-30 (178)
363 1sxj_B Activator 1 37 kDa subu 97.2 0.00022 7.5E-09 54.6 3.2 23 23-45 44-66 (323)
364 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00015 5E-09 56.2 2.2 27 20-46 170-196 (330)
365 3pxi_A Negative regulator of g 97.2 0.00024 8.3E-09 61.1 3.8 26 20-45 200-225 (758)
366 2erx_A GTP-binding protein DI- 97.2 0.00024 8.3E-09 48.9 3.1 23 21-43 3-25 (172)
367 1c1y_A RAS-related protein RAP 97.2 0.00029 9.9E-09 48.3 3.5 24 21-44 3-26 (167)
368 4dey_A Voltage-dependent L-typ 97.2 0.0013 4.5E-08 50.5 7.3 165 24-206 145-324 (337)
369 1fzq_A ADP-ribosylation factor 97.1 0.00031 1E-08 49.3 3.6 26 19-44 14-39 (181)
370 1ls1_A Signal recognition part 97.1 0.00035 1.2E-08 53.2 4.1 26 20-45 97-122 (295)
371 1ypw_A Transitional endoplasmi 97.1 0.00015 5.1E-09 62.8 2.3 33 19-51 509-541 (806)
372 2zej_A Dardarin, leucine-rich 97.1 0.00022 7.5E-09 50.1 2.8 22 22-43 3-24 (184)
373 4dsu_A GTPase KRAS, isoform 2B 97.1 0.00025 8.5E-09 49.7 3.1 25 20-44 3-27 (189)
374 2gco_A H9, RHO-related GTP-bin 97.1 0.00031 1.1E-08 50.1 3.5 25 20-44 24-48 (201)
375 3lxx_A GTPase IMAP family memb 97.1 0.00027 9.3E-09 51.9 3.3 27 17-43 25-51 (239)
376 2oap_1 GSPE-2, type II secreti 97.1 0.0002 7E-09 58.6 2.7 27 20-46 259-285 (511)
377 2zr9_A Protein RECA, recombina 97.1 0.00035 1.2E-08 54.5 3.8 33 20-52 60-97 (349)
378 1wms_A RAB-9, RAB9, RAS-relate 97.1 0.00025 8.6E-09 49.2 2.8 25 20-44 6-30 (177)
379 1z08_A RAS-related protein RAB 97.1 0.0003 1E-08 48.4 3.1 25 20-44 5-29 (170)
380 1a5t_A Delta prime, HOLB; zinc 97.1 0.00048 1.6E-08 53.4 4.5 28 20-47 23-50 (334)
381 1g16_A RAS-related protein SEC 97.1 0.00036 1.2E-08 48.0 3.4 23 21-43 3-25 (170)
382 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.0004 1.4E-08 47.3 3.5 25 21-45 23-47 (149)
383 3nbx_X ATPase RAVA; AAA+ ATPas 97.1 0.00019 6.5E-09 58.6 2.2 25 22-46 42-66 (500)
384 1m7b_A RND3/RHOE small GTP-bin 97.1 0.00036 1.2E-08 48.9 3.4 26 19-44 5-30 (184)
385 2fv8_A H6, RHO-related GTP-bin 97.1 0.0003 1E-08 50.4 3.0 26 19-44 23-48 (207)
386 2bov_A RAla, RAS-related prote 97.1 0.00041 1.4E-08 49.4 3.7 26 19-44 12-37 (206)
387 3lda_A DNA repair protein RAD5 97.1 0.00033 1.1E-08 55.6 3.4 23 20-42 177-199 (400)
388 3kkq_A RAS-related protein M-R 97.1 0.00045 1.5E-08 48.2 3.8 26 19-44 16-41 (183)
389 1ek0_A Protein (GTP-binding pr 97.1 0.00031 1.1E-08 48.2 3.0 24 21-44 3-26 (170)
390 3q72_A GTP-binding protein RAD 97.1 0.00037 1.3E-08 47.7 3.3 21 22-42 3-23 (166)
391 2rcn_A Probable GTPase ENGC; Y 97.1 0.00036 1.2E-08 54.5 3.5 26 20-45 214-239 (358)
392 2o52_A RAS-related protein RAB 97.1 0.00033 1.1E-08 50.0 3.1 43 1-43 1-47 (200)
393 1tq4_A IIGP1, interferon-induc 97.1 0.00037 1.2E-08 55.5 3.6 24 21-44 69-92 (413)
394 1m2o_B GTP-binding protein SAR 97.1 0.00039 1.3E-08 49.2 3.4 25 19-43 21-45 (190)
395 3llu_A RAS-related GTP-binding 97.1 0.00027 9.2E-09 50.2 2.6 32 14-45 13-44 (196)
396 1z0j_A RAB-22, RAS-related pro 97.1 0.00033 1.1E-08 48.2 2.9 24 21-44 6-29 (170)
397 2y8e_A RAB-protein 6, GH09086P 97.0 0.00035 1.2E-08 48.4 3.0 23 21-43 14-36 (179)
398 1vg8_A RAS-related protein RAB 97.0 0.00041 1.4E-08 49.5 3.4 26 19-44 6-31 (207)
399 2yv5_A YJEQ protein; hydrolase 97.0 0.00041 1.4E-08 53.0 3.6 25 20-45 164-188 (302)
400 3tw8_B RAS-related protein RAB 97.0 0.00034 1.2E-08 48.6 2.9 25 19-43 7-31 (181)
401 2bme_A RAB4A, RAS-related prot 97.0 0.00041 1.4E-08 48.5 3.4 25 20-44 9-33 (186)
402 3q85_A GTP-binding protein REM 97.0 0.00043 1.5E-08 47.6 3.4 22 22-43 3-24 (169)
403 3bc1_A RAS-related protein RAB 97.0 0.0004 1.4E-08 48.8 3.3 24 20-43 10-33 (195)
404 2efe_B Small GTP-binding prote 97.0 0.00039 1.3E-08 48.4 3.1 25 20-44 11-35 (181)
405 2a9k_A RAS-related protein RAL 97.0 0.00045 1.5E-08 48.3 3.5 25 20-44 17-41 (187)
406 1v5w_A DMC1, meiotic recombina 97.0 0.00047 1.6E-08 53.6 3.9 25 20-44 121-145 (343)
407 1r2q_A RAS-related protein RAB 97.0 0.00037 1.3E-08 47.8 3.0 24 20-43 5-28 (170)
408 2j0v_A RAC-like GTP-binding pr 97.0 0.00057 2E-08 49.0 4.1 27 18-44 6-32 (212)
409 3k53_A Ferrous iron transport 97.0 0.00044 1.5E-08 51.9 3.5 24 21-44 3-26 (271)
410 3dz8_A RAS-related protein RAB 97.0 0.00034 1.2E-08 49.4 2.8 26 20-45 22-47 (191)
411 3t1o_A Gliding protein MGLA; G 97.0 0.00033 1.1E-08 49.5 2.6 28 19-46 12-39 (198)
412 2gf0_A GTP-binding protein DI- 97.0 0.00059 2E-08 48.3 4.0 25 19-43 6-30 (199)
413 1u94_A RECA protein, recombina 97.0 0.00053 1.8E-08 53.6 3.9 33 20-52 62-99 (356)
414 1r6b_X CLPA protein; AAA+, N-t 97.0 0.00074 2.5E-08 58.1 5.2 28 23-50 490-517 (758)
415 2oil_A CATX-8, RAS-related pro 97.0 0.00057 2E-08 48.2 3.8 25 20-44 24-48 (193)
416 3bh0_A DNAB-like replicative h 97.0 0.00059 2E-08 52.5 4.1 26 20-45 67-92 (315)
417 2ffh_A Protein (FFH); SRP54, s 97.0 0.00057 1.9E-08 54.6 4.1 26 20-45 97-122 (425)
418 2fna_A Conserved hypothetical 97.0 0.00063 2.2E-08 52.7 4.3 31 22-52 31-63 (357)
419 2fh5_B SR-beta, signal recogni 97.0 0.00051 1.7E-08 49.4 3.5 26 19-44 5-30 (214)
420 1zj6_A ADP-ribosylation factor 97.0 0.00058 2E-08 47.9 3.7 26 18-43 13-38 (187)
421 2g6b_A RAS-related protein RAB 97.0 0.00048 1.6E-08 47.9 3.2 26 19-44 8-33 (180)
422 2r8r_A Sensor protein; KDPD, P 97.0 0.00083 2.8E-08 48.8 4.4 25 21-45 6-30 (228)
423 2xtp_A GTPase IMAP family memb 97.0 0.00056 1.9E-08 50.9 3.6 27 18-44 19-45 (260)
424 1r8s_A ADP-ribosylation factor 96.9 0.00063 2.2E-08 46.5 3.6 22 23-44 2-23 (164)
425 3ozx_A RNAse L inhibitor; ATP 96.9 0.00049 1.7E-08 56.8 3.5 27 19-45 23-49 (538)
426 2dpy_A FLII, flagellum-specifi 96.9 0.00061 2.1E-08 54.8 3.9 31 16-46 152-182 (438)
427 2z43_A DNA repair and recombin 96.9 0.00058 2E-08 52.7 3.7 26 20-45 106-131 (324)
428 1mh1_A RAC1; GTP-binding, GTPa 96.9 0.00053 1.8E-08 47.9 3.2 24 21-44 5-28 (186)
429 2obl_A ESCN; ATPase, hydrolase 96.9 0.00051 1.7E-08 53.5 3.3 31 16-46 66-96 (347)
430 1ega_A Protein (GTP-binding pr 96.9 0.00048 1.6E-08 52.6 3.1 25 20-44 7-31 (301)
431 3tkl_A RAS-related protein RAB 96.9 0.00058 2E-08 48.2 3.4 25 20-44 15-39 (196)
432 1f6b_A SAR1; gtpases, N-termin 96.9 0.00051 1.7E-08 48.9 3.0 25 19-43 23-47 (198)
433 2qu8_A Putative nucleolar GTP- 96.9 0.00075 2.6E-08 49.1 4.0 26 19-44 27-52 (228)
434 2fg5_A RAB-22B, RAS-related pr 96.9 0.00051 1.7E-08 48.5 3.0 25 20-44 22-46 (192)
435 4dhe_A Probable GTP-binding pr 96.9 0.00033 1.1E-08 50.7 2.0 31 14-44 22-52 (223)
436 1w5s_A Origin recognition comp 96.9 0.00052 1.8E-08 54.4 3.4 26 20-45 49-76 (412)
437 2ew1_A RAS-related protein RAB 96.9 0.00056 1.9E-08 48.9 3.2 25 20-44 25-49 (201)
438 3euj_A Chromosome partition pr 96.9 0.00051 1.7E-08 55.7 3.2 27 18-45 27-53 (483)
439 1u0l_A Probable GTPase ENGC; p 96.9 0.00045 1.6E-08 52.7 2.8 25 20-44 168-192 (301)
440 4gzl_A RAS-related C3 botulinu 96.9 0.00068 2.3E-08 48.5 3.6 26 19-44 28-53 (204)
441 3b5x_A Lipid A export ATP-bind 96.9 0.00046 1.6E-08 57.6 3.1 27 19-45 367-393 (582)
442 1yqt_A RNAse L inhibitor; ATP- 96.9 0.0006 2.1E-08 56.3 3.6 27 19-45 45-71 (538)
443 1qvr_A CLPB protein; coiled co 96.9 0.00051 1.8E-08 59.9 3.4 26 20-45 190-215 (854)
444 3cbq_A GTP-binding protein REM 96.9 0.00047 1.6E-08 49.0 2.6 23 20-42 22-44 (195)
445 2j1l_A RHO-related GTP-binding 96.9 0.00063 2.2E-08 49.0 3.3 24 20-43 33-56 (214)
446 2cxx_A Probable GTP-binding pr 96.9 0.0006 2.1E-08 47.8 3.1 23 22-44 2-24 (190)
447 3k1j_A LON protease, ATP-depen 96.9 0.0005 1.7E-08 57.6 3.1 26 21-46 60-85 (604)
448 2atx_A Small GTP binding prote 96.9 0.00051 1.8E-08 48.5 2.7 25 20-44 17-41 (194)
449 2i1q_A DNA repair and recombin 96.9 0.00067 2.3E-08 52.2 3.6 25 20-44 97-121 (322)
450 2qnr_A Septin-2, protein NEDD5 96.9 0.00055 1.9E-08 52.3 3.0 25 19-43 16-40 (301)
451 2f7s_A C25KG, RAS-related prot 96.9 0.00071 2.4E-08 48.7 3.5 24 20-43 24-47 (217)
452 3reg_A RHO-like small GTPase; 96.9 0.00061 2.1E-08 48.1 3.1 25 20-44 22-46 (194)
453 3b60_A Lipid A export ATP-bind 96.9 0.00041 1.4E-08 57.9 2.4 27 19-45 367-393 (582)
454 2j9r_A Thymidine kinase; TK1, 96.9 0.0013 4.6E-08 47.3 4.8 28 18-45 25-52 (214)
455 3cph_A RAS-related protein SEC 96.9 0.00081 2.8E-08 48.1 3.7 26 19-44 18-43 (213)
456 3q3j_B RHO-related GTP-binding 96.9 0.00081 2.8E-08 48.5 3.7 26 19-44 25-50 (214)
457 3iev_A GTP-binding protein ERA 96.9 0.0006 2E-08 52.2 3.1 28 17-44 6-33 (308)
458 1ojl_A Transcriptional regulat 96.8 0.00069 2.4E-08 51.8 3.4 25 21-45 25-49 (304)
459 2bcg_Y Protein YP2, GTP-bindin 96.8 0.00072 2.4E-08 48.3 3.3 25 20-44 7-31 (206)
460 2r6a_A DNAB helicase, replicat 96.8 0.00089 3.1E-08 54.1 4.2 26 20-45 202-227 (454)
461 1ni3_A YCHF GTPase, YCHF GTP-b 96.8 0.00084 2.9E-08 53.1 3.9 25 19-43 18-42 (392)
462 1r6b_X CLPA protein; AAA+, N-t 96.8 0.00079 2.7E-08 58.0 4.0 27 19-45 205-231 (758)
463 3qf4_B Uncharacterized ABC tra 96.8 0.00048 1.6E-08 57.7 2.6 28 18-45 378-405 (598)
464 3b1v_A Ferrous iron uptake tra 96.8 0.00078 2.7E-08 50.6 3.5 24 21-44 3-26 (272)
465 3j16_B RLI1P; ribosome recycli 96.8 0.0008 2.7E-08 56.3 3.9 28 18-45 100-127 (608)
466 1x3s_A RAS-related protein RAB 96.8 0.00066 2.3E-08 47.8 3.0 25 20-44 14-38 (195)
467 1ko7_A HPR kinase/phosphatase; 96.8 0.00096 3.3E-08 51.0 4.0 31 20-51 143-173 (314)
468 3a1s_A Iron(II) transport prot 96.8 0.00063 2.2E-08 50.7 2.9 24 20-43 4-27 (258)
469 3pxi_A Negative regulator of g 96.8 0.00087 3E-08 57.7 4.1 26 20-45 519-545 (758)
470 2yl4_A ATP-binding cassette SU 96.8 0.00043 1.5E-08 57.9 2.1 27 19-45 368-394 (595)
471 2il1_A RAB12; G-protein, GDP, 96.8 0.00071 2.4E-08 47.8 3.0 24 20-43 25-48 (192)
472 2cjw_A GTP-binding protein GEM 96.8 0.001 3.6E-08 47.0 3.8 24 21-44 6-29 (192)
473 2qag_C Septin-7; cell cycle, c 96.8 0.0011 3.8E-08 52.9 4.2 24 21-44 31-54 (418)
474 3gj0_A GTP-binding nuclear pro 96.8 0.0009 3.1E-08 48.4 3.3 28 18-45 12-40 (221)
475 1yqt_A RNAse L inhibitor; ATP- 96.7 0.00089 3E-08 55.3 3.5 26 20-45 311-336 (538)
476 3ozx_A RNAse L inhibitor; ATP 96.7 0.00073 2.5E-08 55.8 3.0 27 19-45 292-318 (538)
477 3io5_A Recombination and repai 96.7 0.001 3.5E-08 50.9 3.6 23 23-45 30-52 (333)
478 1zbd_A Rabphilin-3A; G protein 96.7 0.001 3.5E-08 47.3 3.4 24 21-44 8-31 (203)
479 1t9h_A YLOQ, probable GTPase E 96.7 0.00029 9.9E-09 53.9 0.5 24 20-43 172-195 (307)
480 1zcb_A G alpha I/13; GTP-bindi 96.7 0.0011 3.6E-08 52.0 3.7 27 19-45 31-57 (362)
481 2x77_A ADP-ribosylation factor 96.7 0.00075 2.6E-08 47.4 2.6 24 19-42 20-43 (189)
482 1tf7_A KAIC; homohexamer, hexa 96.7 0.00092 3.1E-08 55.1 3.4 23 19-41 37-59 (525)
483 3qks_A DNA double-strand break 96.7 0.0011 3.9E-08 47.4 3.5 25 21-45 23-47 (203)
484 3bk7_A ABC transporter ATP-bin 96.7 0.00096 3.3E-08 55.9 3.5 26 20-45 381-406 (607)
485 2hup_A RAS-related protein RAB 96.7 0.00095 3.2E-08 47.6 3.1 24 20-43 28-51 (201)
486 1xp8_A RECA protein, recombina 96.7 0.0012 4.1E-08 51.8 3.8 33 20-52 73-110 (366)
487 4a82_A Cystic fibrosis transme 96.7 0.00037 1.3E-08 58.1 1.0 28 18-45 364-391 (578)
488 3upu_A ATP-dependent DNA helic 96.7 0.0011 3.8E-08 53.6 3.7 23 23-45 47-69 (459)
489 3bk7_A ABC transporter ATP-bin 96.7 0.00087 3E-08 56.1 3.1 27 19-45 115-141 (607)
490 2fu5_C RAS-related protein RAB 96.7 0.00057 1.9E-08 47.7 1.8 23 21-43 8-30 (183)
491 1qvr_A CLPB protein; coiled co 96.7 0.0011 3.9E-08 57.8 3.9 24 22-45 589-612 (854)
492 3e1s_A Exodeoxyribonuclease V, 96.7 0.0013 4.3E-08 54.8 4.0 25 21-45 204-228 (574)
493 3i8s_A Ferrous iron transport 96.7 0.0013 4.4E-08 49.5 3.6 25 20-44 2-26 (274)
494 2q6t_A DNAB replication FORK h 96.7 0.0014 4.9E-08 52.7 4.1 26 20-45 199-224 (444)
495 3iby_A Ferrous iron transport 96.6 0.0011 3.9E-08 49.3 3.2 23 22-44 2-24 (256)
496 4a1f_A DNAB helicase, replicat 96.6 0.0016 5.4E-08 50.5 4.1 26 20-45 45-70 (338)
497 3qf7_A RAD50; ABC-ATPase, ATPa 96.6 0.0011 3.9E-08 51.9 3.3 20 23-42 25-44 (365)
498 2g3y_A GTP-binding protein GEM 96.6 0.0014 4.7E-08 47.3 3.4 24 20-43 36-59 (211)
499 1tf7_A KAIC; homohexamer, hexa 96.6 0.0014 4.8E-08 54.0 3.9 26 20-45 280-305 (525)
500 3qf4_A ABC transporter, ATP-bi 96.6 0.00055 1.9E-08 57.2 1.5 27 19-45 367-393 (587)
No 1
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=4.8e-37 Score=224.42 Aligned_cols=189 Identities=46% Similarity=0.737 Sum_probs=170.9
Q ss_pred cccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028031 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (215)
Q Consensus 14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (215)
..-...++++|+|.|||||||+|+|+.|++++|+.+++++|++|+.+..+++.+..+..++..|..+|++.+..++.+++
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l 101 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAM 101 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 33345678999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HccC--CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchh
Q 028031 94 EESG--NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLP 169 (215)
Q Consensus 94 ~~~~--~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (215)
.+.. ..++|+||||++..+...|.. ....++.+|+|++|.+++.+|+..| ..+|.++..+.+.+|+..|++...+
T Consensus 102 ~~~~~~~~g~ilDGfPRt~~Qa~~l~~-~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~p 180 (217)
T 3umf_A 102 IKLVDKNCHFLIDGYPRELDQGIKFEK-EVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKP 180 (217)
T ss_dssp HHHTTTCSEEEEETBCSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHH
T ss_pred hhccccccCcccccCCCcHHHHHHHHH-hCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 7643 678999999999999999998 7888999999999999999999998 4567888899999999999999999
Q ss_pred HHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 170 ~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
+.++|.+.+.++.||++.+++++++.|.+.|+..
T Consensus 181 l~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k~ 214 (217)
T 3umf_A 181 VIEHYKQQNKVITIDASGTVDAIFDKVNHELQKF 214 (217)
T ss_dssp HHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 9999999989999999999999999999988653
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=1.1e-34 Score=211.05 Aligned_cols=179 Identities=34% Similarity=0.700 Sum_probs=164.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
|+|+|.|||||||+|+|+.|++++|+.+++++|++|+.+..+++.+.....++..|..+|++++..++..++.. ..++
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~--~~~~ 78 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK--HGNV 78 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS--SSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc--CCce
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999865 4679
Q ss_pred EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc----cC------------------CCCCCcHHHH
Q 028031 102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQ------------------GREDDNVETI 156 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r----~~------------------~~~~~~~~~~ 156 (215)
|+||||++..+...|... ....++.+|+|++|.+++.+|+..| .. .+.++..+.+
T Consensus 79 ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i 158 (206)
T 3sr0_A 79 IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVI 158 (206)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHH
T ss_pred EecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHH
Confidence 999999999999888653 5678999999999999999999988 11 3567889999
Q ss_pred HHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 157 RKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
.+|+..|++...++.++|.+.+.+..||++.++++++++|.+.|.+
T Consensus 159 ~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 159 KKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp HHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 9999999999999999999999899999999999999999999865
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=1.2e-32 Score=201.56 Aligned_cols=182 Identities=33% Similarity=0.591 Sum_probs=150.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-C
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-N 98 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 98 (215)
..+...|.|+|||||||+|+.|++++++.+++.|+++++.+..+++.+..+.+++..|..+|++.+..++.+++.+.. .
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~ 86 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCA 86 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccC
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999987654 5
Q ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc----cC-------------------------CCC
Q 028031 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----NQ-------------------------GRE 149 (215)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r----~~-------------------------~~~ 149 (215)
.++|+||||++..+...|.. ....++.+|+|++|++++.+|+.+| .. +|.
T Consensus 87 ~g~ILDGfPRt~~Qa~~L~~-~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~ 165 (230)
T 3gmt_A 87 NGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRD 165 (230)
T ss_dssp TCEEEESCCCSHHHHHHHHH-TTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCG
T ss_pred CCeEecCCCCcHHHHHHHHH-hCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCC
Confidence 68999999999999999988 7888999999999999999999998 22 277
Q ss_pred CCcHHHHHHHHHHHhhcchhHHHHHHhc-----------CcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 150 DDNVETIRKRFKVFLESSLPVVQYYEAK-----------GKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
++..+.+.+|+..|++...++.++|... +.+..||++.+++++++.|.+.+.+
T Consensus 166 DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 166 DDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229 (230)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 8899999999999999999999999973 6789999999999999999887753
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.97 E-value=6.1e-30 Score=191.47 Aligned_cols=184 Identities=32% Similarity=0.597 Sum_probs=163.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
+.+|++|+|+|+|||||||+|+.|++++|+.+++.|++++..+..+...+..+..++..+...++..+..++...+....
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~ 105 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ 105 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc
Confidence 45789999999999999999999999999999999999999888888999999999999999999999888888886543
Q ss_pred -CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccC---------------------------
Q 028031 98 -NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQ--------------------------- 146 (215)
Q Consensus 98 -~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~--------------------------- 146 (215)
+.++++||||....+...+... ....|+.+|+|++|++++.+|+.+|..
T Consensus 106 ~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 185 (243)
T 3tlx_A 106 CKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEP 185 (243)
T ss_dssp GSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCB
T ss_pred ccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCcccccccc
Confidence 7889999999998888776652 456789999999999999999998821
Q ss_pred --CCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028031 147 --GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 147 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
++.++..+.+.+|+..|.....++.++|...+.++.+|++.+++++++.|.+.|.
T Consensus 186 l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 186 LIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp CBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 2556788999999999999999999999988889999999999999999998774
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.97 E-value=1.5e-28 Score=180.96 Aligned_cols=181 Identities=30% Similarity=0.612 Sum_probs=159.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 100 (215)
|.|+|+|+|||||||+|+.|++.+|+.+++.|++++..+..+.+.+..+...+..+...++.....++...+.... +.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence 4699999999999999999999999999999999999999998899999999999999999988888888876543 789
Q ss_pred EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCC
Q 028031 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR 148 (215)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~-----------------------------~~~ 148 (215)
+++||+|....+...+... ....|+.+|+|++|++++.+|+.+|. .++
T Consensus 81 ~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3dl0_A 81 FLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCC
Confidence 9999999998877766653 34578999999999999999999871 134
Q ss_pred CCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
.++..+.+.+|+..|.....++.++|...+.++.+|++.++++++++|.+.+..
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3dl0_A 161 ADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214 (216)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 677889999999999999999999999888899999999999999999998864
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.97 E-value=2.5e-28 Score=179.83 Aligned_cols=181 Identities=31% Similarity=0.637 Sum_probs=159.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 100 (215)
|.|+|+|+|||||||+|+.|++.+|+.+++.|++++..+..+...+..+...+..+...++.....++...+.... +.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence 4699999999999999999999999999999999999999888899999999999999999988888888876543 788
Q ss_pred EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCC
Q 028031 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR 148 (215)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~-----------------------------~~~ 148 (215)
+|+||+|....+...+... ....++.+|+|++|++++.+|+.+|. .++
T Consensus 81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3fb4_A 81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccC
Confidence 9999999998877766653 34568999999999999999999870 123
Q ss_pred CCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
.++..+.+.+|+..|.....++.++|...+.++++|++.++++++++|.+.+..
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 161 IDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 567788999999999999999999999888899999999999999999998864
No 7
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.97 E-value=3.3e-28 Score=176.48 Aligned_cols=184 Identities=43% Similarity=0.829 Sum_probs=152.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc-
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES- 96 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 96 (215)
+.++++|+|+|+|||||||+++.|++.+++.+++.|++++.....+...+..+.+.+..+...+.+.....+...+...
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~ 85 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV 85 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc
Confidence 3467899999999999999999999999999999999999887777778888888888888888877777776665432
Q ss_pred -CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHHH
Q 028031 97 -GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQY 173 (215)
Q Consensus 97 -~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (215)
.+.++|+||++....+...+.. ....++.+|||++|++++.+|+.+| ..++..+..+.+.+|+..+.....++...
T Consensus 86 ~~~~~vi~d~~~~~~~~~~~~~~-~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 164 (196)
T 2c95_A 86 NTSKGFLIDGYPREVQQGEEFER-RIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAF 164 (196)
T ss_dssp TTCSCEEEESCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCCcEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999988887777766 5577899999999999999999888 23444456778889999888887777777
Q ss_pred HHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 174 YEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 174 ~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
|...+.++++|++.++++++++|...+..
T Consensus 165 ~~~~~~~~~Id~~~~~e~v~~~i~~~l~~ 193 (196)
T 2c95_A 165 YEKRGIVRKVNAEGSVDSVFSQVCTHLDA 193 (196)
T ss_dssp HHHHTCEEEEECCSCHHHHHHHHHHHHHH
T ss_pred HHhcCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 77666677889989999999999988753
No 8
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=4.4e-28 Score=178.63 Aligned_cols=181 Identities=33% Similarity=0.641 Sum_probs=151.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-C
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-N 98 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 98 (215)
++++|+|+|+|||||||+++.|++.+++.+++.|++++.....+++.+..+.+.+..+...+.+....++...+.... +
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~ 83 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCV 83 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccC
Confidence 457899999999999999999999999999999999999888888888888888888888898888888887776533 7
Q ss_pred CeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccC-----------------------------
Q 028031 99 DKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQ----------------------------- 146 (215)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~----------------------------- 146 (215)
.++|+||||.+..+...+..+ ....|+++|||++|++++.+|+..|..
T Consensus 84 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 163 (217)
T 3be4_A 84 NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLV 163 (217)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCB
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccccc
Confidence 789999999987766665531 456889999999999999999998710
Q ss_pred CCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhh
Q 028031 147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l 200 (215)
.+.++..+.+.+++..|.....++.++|...+.++.+|++.+++++++.|.+.+
T Consensus 164 ~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 164 WRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp CCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence 122345778889999999988999888987777899999999999999998754
No 9
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.97 E-value=9.2e-28 Score=174.91 Aligned_cols=196 Identities=30% Similarity=0.576 Sum_probs=148.9
Q ss_pred CCccccccccccccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCC
Q 028031 1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV 80 (215)
Q Consensus 1 ~~~~~~~p~~~~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (215)
||.--+.|-+..... .+.++++|+|+|+|||||||+|+.|++.+++.+++.|++++..+..+...+..+.+.+..+...
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~ 79 (201)
T 2cdn_A 1 MGSSHHHHHHSSGLV-PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLV 79 (201)
T ss_dssp ----------------CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCcccccccccccc-CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcc
Confidence 555555565544333 4667889999999999999999999999999999999999987777777788888888888888
Q ss_pred CHHHHHHHHHHHHHcc-CCCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHH
Q 028031 81 PSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETI 156 (215)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~ 156 (215)
+......++...+... .+.++|+||++.+..+...+..+ ....|+.+|||++|++++.+|+.+| +++.+..+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R--~r~~~~~e~~ 157 (201)
T 2cdn_A 80 PSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVI 157 (201)
T ss_dssp CHHHHHHHHHHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH--CCTTCSHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC--CCCCCCHHHH
Confidence 8887777777665432 26679999999887766555442 3456899999999999999999988 6666677888
Q ss_pred HHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028031 157 RKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
.+++..|.....++...| ...++++|++.++++++++|...+.
T Consensus 158 ~~r~~~~~~~~~~~~~~~--~~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 158 LNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp HHHHHHHHHHTTTHHHHT--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHh--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 889888887777766666 3457889999999999999998874
No 10
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.97 E-value=1.2e-27 Score=176.71 Aligned_cols=183 Identities=26% Similarity=0.553 Sum_probs=154.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cc-C
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-ES-G 97 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 97 (215)
++++|+|+|+|||||||+++.|++.+++.+++.|++++.....+++.+..+...+..+...+.+....++...+. .. .
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 82 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPAC 82 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcccc
Confidence 567899999999999999999999999999999999999888888888888888988888899888888887775 22 2
Q ss_pred CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccC----------------------------
Q 028031 98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQ---------------------------- 146 (215)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~---------------------------- 146 (215)
+.++|+|||+.+..+...+..+ ....||++|||++|++++.+|+..|..
T Consensus 83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l 162 (220)
T 1aky_A 83 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEAL 162 (220)
T ss_dssp GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccccc
Confidence 5689999999887766555432 457899999999999999999987710
Q ss_pred -CCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 147 -GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
.+.++..+.+.+|+..|.....++.++|...+.++.+|++.+++++++.|...+..
T Consensus 163 ~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 219 (220)
T 1aky_A 163 VQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGK 219 (220)
T ss_dssp BCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHTC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 13445677889999999998888888888777789999999999999999988854
No 11
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.96 E-value=3.2e-27 Score=170.88 Aligned_cols=184 Identities=55% Similarity=0.939 Sum_probs=153.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCC
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (215)
.++++|+|+|+|||||||+++.|++.+++.+++.|++++.....+...+..+.+.+..+...+.......+...+....+
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 83 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQG 83 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTT
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCC
Confidence 35679999999999999999999999999999999999988777888888888888888888888777788777765557
Q ss_pred CeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHHHH
Q 028031 99 DKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYY 174 (215)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (215)
.++|+||++........|... ....++++|||++|++++.+|+.+| ..++..+..+.+.+|+..+.....++...|
T Consensus 84 ~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~ 163 (194)
T 1qf9_A 84 KNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHY 163 (194)
T ss_dssp CCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHH
Confidence 899999999888777666542 2236889999999999999999988 235666678889999998888777777777
Q ss_pred HhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 175 EAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 175 ~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
...+.++++|++.++++++++|.+.+..
T Consensus 164 ~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 164 NKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 7666678899989999999999988753
No 12
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.96 E-value=1.5e-27 Score=175.44 Aligned_cols=178 Identities=37% Similarity=0.675 Sum_probs=152.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 100 (215)
+.|+|+|+|||||||+++.|++.+|+.+++.|+++++.+..+...+..+...+..+...+.+.+..++...+.... +.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~ 80 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG 80 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence 4699999999999999999999999999999999999888888888778888888888888888888888776532 467
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCCCCC
Q 028031 101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDD 151 (215)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~-----------------------------~~~~~~ 151 (215)
+|+||+|....+...+.. ....|+++|+|+++++++.+|+.+|. ..+.++
T Consensus 81 ~i~dg~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd 159 (214)
T 1e4v_A 81 FLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDD 159 (214)
T ss_dssp EEEESCCCSHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTC
T ss_pred EEEeCCCCCHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCC
Confidence 999999988887777776 66789999999999999999998771 125566
Q ss_pred cHHHHHHHHHHHhhcchhHHHHHHhc-----CcEEEEcCCCCHHHHHHHHHHhh
Q 028031 152 NVETIRKRFKVFLESSLPVVQYYEAK-----GKVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~id~~~~~~e~~~~i~~~l 200 (215)
..+.+.+|+..|.....++.++|... ..++.+|++.+++++++.|.+.+
T Consensus 160 ~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 160 QEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 78889999999999999998888764 56889999999999999998876
No 13
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.96 E-value=4.5e-27 Score=175.04 Aligned_cols=184 Identities=34% Similarity=0.614 Sum_probs=154.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
+.+++.|+|+|+|||||||+++.|++++++.+++.|+++++.+..+...+..+...+..+...+++....++...+....
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~ 92 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP 92 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence 44668999999999999999999999999999999999999888888888888888888888899988888888776532
Q ss_pred -CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccC------------------------C--
Q 028031 98 -NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQ------------------------G-- 147 (215)
Q Consensus 98 -~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~------------------------~-- 147 (215)
+.++|+|||+.+..+...+..+ ....++++|||+++++++.+|+..|.. +
T Consensus 93 ~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 172 (233)
T 1ak2_A 93 CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEP 172 (233)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCB
T ss_pred ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccccc
Confidence 5679999999888776655432 346789999999999999999987710 1
Q ss_pred ---CCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028031 148 ---REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 148 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
+.++..+.+.+|+..|.....++.++|...+.++.||++.+++++++.|.+.+.
T Consensus 173 l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~ 229 (233)
T 1ak2_A 173 LIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS 229 (233)
T ss_dssp CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 345567888999999988888888888876678999999999999999998875
No 14
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.96 E-value=1.5e-26 Score=168.70 Aligned_cols=185 Identities=48% Similarity=0.927 Sum_probs=150.8
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH-cCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (215)
+.+.++++|+|+|+|||||||+++.|++.+|+.+++.|++++.... .+...++.+...+..+...+......++...+.
T Consensus 10 ~~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~ 89 (203)
T 1ukz_A 10 FSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS 89 (203)
T ss_dssp SCTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 3466788999999999999999999999999999999999988654 467777888888888888777766666655443
Q ss_pred c---cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchh
Q 028031 95 E---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLP 169 (215)
Q Consensus 95 ~---~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (215)
. .++..+++||++.+......+.. ....++++|||++|++++.+|+.+| ..++..+..+.+.+|+..|.....+
T Consensus 90 ~~l~~g~~~~i~dg~~~~~~~~~~~~~-~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~ 168 (203)
T 1ukz_A 90 DNVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMP 168 (203)
T ss_dssp HHHHTTCCEEEEETCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHH
T ss_pred hhhccCCCeEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHH
Confidence 2 22368999999988887777766 5556899999999999999999887 2345566788889999998888888
Q ss_pred HHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028031 170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 170 ~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
+.+.|...+.++.+|++.++++++++|.+.+.
T Consensus 169 ~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~ 200 (203)
T 1ukz_A 169 VIEYFETKSKVVRVRCDRSVEDVYKDVQDAIR 200 (203)
T ss_dssp HHHHHHTTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcEEEEECCCCHHHHHHHHHHHHh
Confidence 87777766777789999999999999998874
No 15
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.96 E-value=4.1e-27 Score=171.07 Aligned_cols=181 Identities=40% Similarity=0.769 Sum_probs=147.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc--C
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G 97 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 97 (215)
++++|+|+|+|||||||+++.|++++++.+++.|++++.....+.+.+..+.+.+..+...+.......+...+... .
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 90 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD 90 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence 46799999999999999999999999999999999999887667777777888888888888887777776665443 3
Q ss_pred CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccC--CCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028031 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYE 175 (215)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (215)
+.++|+||++....+...|.. ....|+++|||++|++++.+|+.+|.. ++.++..+.+.+|+..+.....++..+|.
T Consensus 91 ~~~vi~dg~~~~~~~~~~l~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 169 (199)
T 2bwj_A 91 TRGFLIDGYPREVKQGEEFGR-RIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYE 169 (199)
T ss_dssp CSCEEEETCCSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999988877777766 445788999999999999999998821 22223456788888888877777767777
Q ss_pred hcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028031 176 AKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 176 ~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
..+.++++|++.++++++++|...+.
T Consensus 170 ~~~~~~~id~~~~~e~v~~~i~~~l~ 195 (199)
T 2bwj_A 170 TKTQLHKINAEGTPEDVFLQLCTAID 195 (199)
T ss_dssp HHSEEEEEETTSCHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 66666889998999999999988875
No 16
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.96 E-value=5.6e-27 Score=173.33 Aligned_cols=179 Identities=27% Similarity=0.523 Sum_probs=149.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
++|+|+|+|||||||+++.|++.+++.+++.|+++++.+..+...+..+.+.+..+...+.+....++...+....+.++
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~v 80 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGW 80 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeE
Confidence 47999999999999999999999999999999999998777777888888888888888888888888877765336789
Q ss_pred EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-----CC--------------------------
Q 028031 102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----QG-------------------------- 147 (215)
Q Consensus 102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~-----~~-------------------------- 147 (215)
|+||++.+..+...+... ....|+++|||++|++++.+|+.+|. .|
T Consensus 81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~ 160 (223)
T 2xb4_A 81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSA 160 (223)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEEC
T ss_pred EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccccccccc
Confidence 999999887777666541 35689999999999999999999881 11
Q ss_pred CCCCcHH-HHHHHHHHHhhcchhHHH---HHHh-----cCcEEEEcCCCCHHHHHHHHHHhh
Q 028031 148 REDDNVE-TIRKRFKVFLESSLPVVQ---YYEA-----KGKVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 148 ~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~id~~~~~~e~~~~i~~~l 200 (215)
+.++..+ .+.+|+..|+....++.+ +|.. .+.++.||++.+++++++.|.+.+
T Consensus 161 r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 161 RADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp CGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 1123356 889999999999988888 8876 567899999999999999998876
No 17
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.96 E-value=2.2e-26 Score=166.69 Aligned_cols=182 Identities=56% Similarity=0.968 Sum_probs=146.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc-CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH----
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME---- 94 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 94 (215)
+|++|+|+|+|||||||+|+.|++.+|+.+++.|++++..... +...+..+...+..+...+.+....++...+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 4689999999999999999999999999999999999887654 45567777777777887777665555443332
Q ss_pred cc-CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchh
Q 028031 95 ES-GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLP 169 (215)
Q Consensus 95 ~~-~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (215)
.. .+..+|+||++........|... ....++.+|||++|++++.+|+.+| ..+++.+..+.+.+++..|.....+
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~ 161 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKP 161 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHH
Confidence 21 37799999999888766655542 2235788999999999999999988 3466777788888999999998888
Q ss_pred HHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028031 170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 170 ~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
+..+|...+.+++||++.++++++++|.+.+.
T Consensus 162 ~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 193 (196)
T 1tev_A 162 IIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD 193 (196)
T ss_dssp HHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 88888877777799999999999999998875
No 18
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.95 E-value=2.7e-26 Score=170.20 Aligned_cols=185 Identities=31% Similarity=0.584 Sum_probs=152.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCC
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (215)
.++++|+|+|+|||||||+++.|++.+++.+++.|++++.....+...+..+.+++..+...+.+....++...+....+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 84 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQ 84 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccC
Confidence 45689999999999999999999999999999999999998777887788888888888888888777777666654335
Q ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc----CC-------------------------CC
Q 028031 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN----QG-------------------------RE 149 (215)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~----~~-------------------------~~ 149 (215)
..+|+||++....+...+.. ...++.+|||++|++++.+|+..|. .+ +.
T Consensus 85 ~~~vid~~~~~~~~~~~l~~--~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~ 162 (227)
T 1zd8_A 85 YSWLLDGFPRTLPQAEALDR--AYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQRE 162 (227)
T ss_dssp SCEEEESCCCSHHHHHHHHT--TSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCG
T ss_pred CCEEEeCCCCCHHHHHHHHH--hcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCC
Confidence 78999999988776655554 3568899999999999999998761 12 23
Q ss_pred CCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028031 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK 206 (215)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~ 206 (215)
++..+.+.+|+..|.....++..+|...+.++.+|++ +++++++.|.+.+......
T Consensus 163 ~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~~~ 218 (227)
T 1zd8_A 163 DDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKVPQ 218 (227)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhcCC
Confidence 4567889999999999888888888877778999998 9999999999999866543
No 19
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.95 E-value=2.8e-26 Score=165.04 Aligned_cols=179 Identities=34% Similarity=0.696 Sum_probs=144.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCC
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (215)
.++++|+|+|+|||||||+++.|++.+|+.+++.|++++..+..+.+.+..+.+.+..+...+.......+...+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~---- 77 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA---- 77 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc----
Confidence 4567999999999999999999999999999999999998777777777888888888888888777777766653
Q ss_pred CeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHhhcchhHHHH
Q 028031 99 DKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN--QGREDDNVETIRKRFKVFLESSLPVVQY 173 (215)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (215)
.++|+||++....+...+..+ ....|+.+|||++|++++.+|+.+|. .++..+..+.+.+|+..|.....++.+.
T Consensus 78 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~ 157 (186)
T 3cm0_A 78 ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGY 157 (186)
T ss_dssp SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 349999999887665544331 33457899999999999999998882 2466667888888998888776777777
Q ss_pred HHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028031 174 YEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 174 ~~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
|...+.++++|++.++++++++|.+.+.
T Consensus 158 ~~~~~~~~~id~~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 158 YEARGVLKRVDGLGTPDEVYARIRAALG 185 (186)
T ss_dssp HHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred HHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence 7765557889998999999999988763
No 20
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.95 E-value=9.9e-26 Score=166.59 Aligned_cols=183 Identities=31% Similarity=0.629 Sum_probs=146.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG- 97 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 97 (215)
+++++|+|+|+|||||||+++.|++.+++.+++.|++++.....+...+..+.+.+..+...+.+.+..++...+....
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA 82 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence 3567899999999999999999999999999999999998777788888888888888888888877777766654321
Q ss_pred -CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccC----C---------------------CCCC
Q 028031 98 -NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ----G---------------------REDD 151 (215)
Q Consensus 98 -~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~----~---------------------~~~~ 151 (215)
+.++|+||++....+...+.. ....|+++|||+++++++.+|+..|.. + +..+
T Consensus 83 ~~~~~vidg~~~~~~~~~~l~~-~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d 161 (222)
T 1zak_A 83 QENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDD 161 (222)
T ss_dssp HHTCEEEESCCCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTC
T ss_pred cCCcEEEECCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCC
Confidence 456778999988877777776 667789999999999999999987610 1 1234
Q ss_pred cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028031 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (215)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~ 204 (215)
..+.+.+|+..|+....++...|.. .++.+|++.+++++++.|.+.+....
T Consensus 162 ~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~l 212 (222)
T 1zak_A 162 TEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSIL 212 (222)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhhc
Confidence 4667888888888776676555543 47889999999999999998886543
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.89 E-value=1.3e-20 Score=141.15 Aligned_cols=184 Identities=30% Similarity=0.598 Sum_probs=142.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (215)
++.+|+|.|++||||||+++.|++.+|+..++.|++++.....+...+..+...+..+...+.....+.+...+....+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 57899999999999999999999999999999999988765544445555556667777778777777776665543456
Q ss_pred eEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-c---CC-------------------------CCC
Q 028031 100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N---QG-------------------------RED 150 (215)
Q Consensus 100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~---~~-------------------------~~~ 150 (215)
++++||++....+...+.. ...++++++|+++++++.+|+..| . .+ ...
T Consensus 106 ~~il~g~~~~~~~~~~l~~--~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~ 183 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDK--ICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQED 183 (246)
T ss_dssp CEEEESCCCSHHHHHHHHT--TCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGG
T ss_pred eEEEECCCCCHHHHHHHHh--hcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCC
Confidence 7889998877654444442 356789999999999999998766 1 11 223
Q ss_pred CcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028031 151 DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK 206 (215)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~ 206 (215)
+..+.+.+++..|.+...++..+|...+.++.+|++.+ +++++.|.+.+......
T Consensus 184 ~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~~~ 238 (246)
T 2bbw_A 184 DKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKITP 238 (246)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTSCC
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhCCC
Confidence 45678888998888888888888888777899999888 99999999998765544
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.89 E-value=3.6e-21 Score=136.89 Aligned_cols=170 Identities=16% Similarity=0.221 Sum_probs=115.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCC----CcHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcc
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS----ENGTMIQNMIKE-GKIVPSEVTIKLLQKAMEES 96 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 96 (215)
++|+|+|+|||||||+++.| +.+|+.+++.|++++....... ............ +. ......+...+...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~ 76 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGD----GVVARLCVEELGTS 76 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCT----THHHHHHHHHHCSC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCH----HHHHHHHHHHHHhc
Confidence 68999999999999999999 9999999999999998765421 122222222221 21 22344455555334
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028031 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (215)
Q Consensus 97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (215)
.+..+|+||+ ........+.. ....++.+|||++|++++.+|+..|.+.......+.+.+++...... +... +..
T Consensus 77 ~~~~vi~dg~-~~~~~~~~l~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~--~~~~-~~~ 151 (179)
T 3lw7_A 77 NHDLVVFDGV-RSLAEVEEFKR-LLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKL--GIGE-VIA 151 (179)
T ss_dssp CCSCEEEECC-CCHHHHHHHHH-HHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHH--THHH-HHH
T ss_pred CCCeEEEeCC-CCHHHHHHHHH-HhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhcc--ChHh-HHH
Confidence 4889999998 77777777777 55578899999999999999999882222235567777776432211 1122 233
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 177 KGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 177 ~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
... +++|++.++++++++|...+..
T Consensus 152 ~ad-~vId~~~~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 152 MAD-YIITNDSNYEEFKRRCEEVTDR 176 (179)
T ss_dssp TCS-EEEECCSCHHHHHHHHHHHHHH
T ss_pred hCC-EEEECCCCHHHHHHHHHHHHHH
Confidence 333 5666767999999999988753
No 23
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.83 E-value=7.5e-19 Score=127.76 Aligned_cols=161 Identities=17% Similarity=0.244 Sum_probs=106.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcc
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLLQKAMEES 96 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 96 (215)
++++|+|+|+|||||||+++.|++.+|+.+++.|++..... ......+........ ...+...+ .
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~~--~ 84 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGERL--A 84 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHHH--T
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHHH--h
Confidence 46799999999999999999999999999999987642210 011111222222211 22233333 2
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028031 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (215)
Q Consensus 97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (215)
.+..+|+|+..........+.. ....++.+|||++|.+++.+|+.+| +......+.+...+..+. +. + .
T Consensus 85 ~~~~vivd~~~~~~~~~~~l~~-~~~~~~~vi~l~~~~e~~~~Rl~~R--~~~~~~~~~~~~~~~~~~----~~---~-~ 153 (202)
T 3t61_A 85 SREPVVVSCSALKRSYRDKLRE-SAPGGLAFVFLHGSESVLAERMHHR--TGHFMPSSLLQTQLETLE----DP---R-G 153 (202)
T ss_dssp SSSCCEEECCCCSHHHHHHHHH-TSTTCCEEEEEECCHHHHHHHHHHH--HSSCCCHHHHHHHHHHCC----CC---T-T
T ss_pred cCCCEEEECCCCCHHHHHHHHH-hcCCCeEEEEEeCCHHHHHHHHHHh--hccCCCHHHHHHHHHhcC----CC---C-C
Confidence 3778999987766666677776 5556678999999999999999988 222222333333333322 11 1 1
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 177 KGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 177 ~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
....++||++.++++++++|...+...
T Consensus 154 ~~~~~~Id~~~~~~e~~~~I~~~l~~~ 180 (202)
T 3t61_A 154 EVRTVAVDVAQPLAEIVREALAGLARL 180 (202)
T ss_dssp STTEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 224678888899999999999888643
No 24
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.82 E-value=5.8e-19 Score=128.23 Aligned_cols=167 Identities=16% Similarity=0.300 Sum_probs=100.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh--CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH------------H
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT------------I 86 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 86 (215)
..+|+|+|+.||||||+++.|++.+ |+.++.... +.+.+.++.+.+.+.++........ .
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~ 75 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV 75 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999998 444432210 2234445555555554444433211 1
Q ss_pred HHHHHHHHccCCCeEEEeCCCC------------CHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCC-
Q 028031 87 KLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDD- 151 (215)
Q Consensus 87 ~~~~~~~~~~~~~~~iidg~~~------------~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~- 151 (215)
..+...+.+ +..||.|.|.. ..++...+... ..+.||++|||++|++++.+|+.+| ++..+
T Consensus 76 ~~i~p~l~~--g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r--~~~~dr 151 (205)
T 4hlc_A 76 LKVIPALKE--GKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN--SRDQNR 151 (205)
T ss_dssp HTHHHHHHT--TCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---------
T ss_pred HHHHHHHHc--CCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhc--CCcccc
Confidence 222333332 88999996532 13333333332 5678999999999999999999887 32221
Q ss_pred ---cHHHHHHHHHHHhhcchhHHHHHH-hcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 152 ---NVETIRKRFKVFLESSLPVVQYYE-AKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 152 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
...++.++....+ ..... .+..+++||++.++++++++|.+.+...
T Consensus 152 ~e~~~~~f~~~v~~~Y------~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~ 201 (205)
T 4hlc_A 152 LDQEDLKFHEKVIEGY------QEIIHNESQRFKSVNADQPLENVVEDTYQTIIKY 201 (205)
T ss_dssp CCHHHHHHHHHHHHHH------HHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHH------HHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 1223333332211 11122 2346899999999999999988777543
No 25
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.82 E-value=1.1e-18 Score=128.99 Aligned_cols=173 Identities=17% Similarity=0.283 Sum_probs=107.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC--CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHH-HH-----
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK-LL----- 89 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----- 89 (215)
+.++++|+|+|+|||||||+++.|++.++ +.++... .+.+.+.+..+.+++..+.........- ..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~ 96 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE 96 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999996 4444331 1233445556666665554333221111 11
Q ss_pred ------HHHHHccCCCeEEEe----------CCCCCH--HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc--CC
Q 028031 90 ------QKAMEESGNDKFLID----------GFPRNE--ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN--QG 147 (215)
Q Consensus 90 ------~~~~~~~~~~~~iid----------g~~~~~--~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~--~~ 147 (215)
...+. .+..||+| |++... .....+..+ ....||++|||++|++++.+|+.+|. .+
T Consensus 97 ~~~~~i~~~l~--~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~d 174 (229)
T 4eaq_A 97 HLVLKVIPALK--EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQN 174 (229)
T ss_dssp HCCCCCHHHHH--TTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHH--CCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCcc
Confidence 11121 37899999 776433 332232221 56789999999999999999999881 12
Q ss_pred CCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
+.+.....+.+++...+.... ..+ +..+++||++.++++++++|.+.+...
T Consensus 175 r~e~~~~~~~~rv~~~y~~l~---~~~--~~~~~vIDa~~s~eev~~~I~~~l~~~ 225 (229)
T 4eaq_A 175 RLDQEDLKFHEKVIEGYQEII---HNE--SQRFKSVNADQPLENVVEDTYQTIIKY 225 (229)
T ss_dssp CCCHHHHHHHHHHHHHHHHHT---TTC--TTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHH---HhC--CCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 332234455555554332211 111 235889999999999999999887644
No 26
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=4.3e-19 Score=128.77 Aligned_cols=170 Identities=12% Similarity=0.142 Sum_probs=103.2
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (215)
++.+.++.+|+|+|+|||||||+++.|++.+++.+++.|++..... +....+.+...-. .........++....
T Consensus 19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g~~i~~~~~~~~~---~~~~~~e~~~l~~l~- 92 (199)
T 3vaa_A 19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--HKTVGELFTERGE---AGFRELERNMLHEVA- 92 (199)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHHHHHH---HHHHHHHHHHHHHHT-
T ss_pred eEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--CCcHHHHHHhcCh---HHHHHHHHHHHHHHh-
Confidence 3445567799999999999999999999999999999998876542 2223222221110 001111122333322
Q ss_pred ccCCCeEEEe---CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh-hc-cCCC-CCCcHHHHHHHHHHHhhcch
Q 028031 95 ESGNDKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL-NR-NQGR-EDDNVETIRKRFKVFLESSL 168 (215)
Q Consensus 95 ~~~~~~~iid---g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~-~r-~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (215)
....+|++ |.+........+.. ++.+|||++|++++.+|+. .| .++. .....+.+.+++........
T Consensus 93 --~~~~~vi~~ggg~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~ 165 (199)
T 3vaa_A 93 --EFENVVISTGGGAPCFYDNMEFMNR-----TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRA 165 (199)
T ss_dssp --TCSSEEEECCTTGGGSTTHHHHHHH-----HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHH
T ss_pred --hcCCcEEECCCcEEccHHHHHHHHc-----CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHH
Confidence 24556666 33333334344433 5789999999999999998 44 2221 23345556666665555444
Q ss_pred hHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhCC
Q 028031 169 PVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTP 202 (215)
Q Consensus 169 ~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~~ 202 (215)
++ |.. . .++||++ .++++++++|...+..
T Consensus 166 ~~---y~~-a-d~~Idt~~~s~ee~~~~I~~~l~~ 195 (199)
T 3vaa_A 166 PF---YTQ-A-QYIFNADELEDRWQIESSVQRLQE 195 (199)
T ss_dssp HH---HTT-S-SEEEECCCCSSHHHHHHHHHHHHH
T ss_pred HH---Hhh-C-CEEEECCCCCHHHHHHHHHHHHHH
Confidence 43 444 3 3566665 4999999999888754
No 27
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.81 E-value=4.1e-18 Score=122.95 Aligned_cols=163 Identities=19% Similarity=0.309 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-----------HH
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------IK 87 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 87 (215)
++|+|+|+|||||||+++.|++++ |+.+++.++ ......+..+...+..+...+.... ..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998 898888642 1122233344444444433322111 12
Q ss_pred HHHHHHHccCCCeEEEe----------CCCCC--HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028031 88 LLQKAMEESGNDKFLID----------GFPRN--EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (215)
Q Consensus 88 ~~~~~~~~~~~~~~iid----------g~~~~--~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~ 153 (215)
.+...+. .+..+++| |++.. ......+..+ ....|+.+|||++|++++.+|+.+| ++.. .
T Consensus 75 ~i~~~l~--~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r--~~~~--~ 148 (195)
T 2pbr_A 75 KIIPDLK--RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK--NRFE--N 148 (195)
T ss_dssp THHHHHH--TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT--TCCC--C
T ss_pred HHHHHHh--CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc--Cccc--h
Confidence 2223332 26788888 43332 2233332211 3447999999999999999999876 4433 3
Q ss_pred HHHHHHHHH-HhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 154 ETIRKRFKV-FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 154 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
..+.+++.. |... ...+ ..++++|++.++++++++|.+.+...
T Consensus 149 ~~~~~~~~~~~~~~----~~~~---~~~~~Id~~~~~~~~~~~i~~~l~~~ 192 (195)
T 2pbr_A 149 KEFLEKVRKGFLEL----AKEE---ENVVVIDASGEEEEVFKEILRALSGV 192 (195)
T ss_dssp HHHHHHHHHHHHHH----HHHS---TTEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH----HhhC---CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 345555432 3221 1112 35788999999999999999888654
No 28
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.81 E-value=1.8e-19 Score=132.48 Aligned_cols=171 Identities=15% Similarity=0.250 Sum_probs=103.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh-------CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-----
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT----- 85 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 85 (215)
+.++++|+|+|++||||||+++.|++.+ |+.++.. ++ +.+++.++.+.+.+..+...+....
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a 95 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFA 95 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4568899999999999999999999998 4333321 11 2344556666666665543322221
Q ss_pred ------HHHHHHHHHccCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc
Q 028031 86 ------IKLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN 145 (215)
Q Consensus 86 ------~~~~~~~~~~~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~ 145 (215)
.+.+...+. .+..||+|+|..+ .+++..+... ..+.||++|||++|++++.+|+.+|.
T Consensus 96 ~R~~~~~~~i~p~l~--~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~ 173 (227)
T 3v9p_A 96 GRREHLALVIEPALA--RGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR 173 (227)
T ss_dssp HHHHHHHHTHHHHHH--TTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred HHHHHHHHHHHHHHH--cCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 112223333 2889999965322 3344333321 46899999999999999999999881
Q ss_pred -CCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028031 146 -QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 146 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
..+.+....++.++....+. .+... .+..+++||++.++++++++|.+.+.
T Consensus 174 ~~dr~E~~~~ef~~rv~~~Y~---~la~~--~~~~~~vIDa~~s~eeV~~~I~~~l~ 225 (227)
T 3v9p_A 174 MPDKFESESDAFFARTRAEYL---RRAQE--APHRFVIVDSSEPIAQIRKQLEGVLA 225 (227)
T ss_dssp CC---CCHHHHHHHHHHHHHH---HHHHH--CTTTEEEEETTSCHHHHHHHHHHHHH
T ss_pred CccchhhhhHHHHHHHHHHHH---HHHHH--hcCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 12222222344444433222 11111 13468999999999999999988775
No 29
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.80 E-value=7.9e-19 Score=126.60 Aligned_cols=121 Identities=12% Similarity=0.164 Sum_probs=75.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
+.++++|+|+|+|||||||+++.|++.+++.+++.|++..................+.. .........+...+. .
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~--~ 76 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ--S 76 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH--T
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh--C
Confidence 35678999999999999999999999999999999776444322100001110000000 000111222233332 2
Q ss_pred CCeEEEeCCCCCHHHHHHH---HHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028031 98 NDKFLIDGFPRNEENRAAF---EAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~---~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
+.++|+|+++........+ .. ....++++|||++|++++.+|+.+|
T Consensus 77 g~~vi~d~~~~~~~~~~~~~~l~~-~~~~~~~~v~l~~~~e~~~~R~~~R 125 (193)
T 2rhm_A 77 GQSLIMESNFRVDLDTERMQNLHT-IAPFTPIQIRCVASGDVLVERILSR 125 (193)
T ss_dssp TCCEEEEECCCHHHHHHHHHHHHH-HSCCEEEEEEEECCHHHHHHHHHHH
T ss_pred CCeEEEecCCCCHHHHHHHHHHHH-hcCCeEEEEEEeCCHHHHHHHHHHh
Confidence 7789999987322222233 33 4567889999999999999999888
No 30
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.80 E-value=8.2e-18 Score=121.64 Aligned_cols=168 Identities=17% Similarity=0.259 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-------HHHHHH
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-------IKLLQK 91 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 91 (215)
++|+|+|++||||||+++.|++.+ |+.++..+. +.+...+..+.+.+..+...+.... ...+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999 888875422 2233334444444443333332211 111222
Q ss_pred HHHcc--CCCeEEEeCC----------CC--CHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHH
Q 028031 92 AMEES--GNDKFLIDGF----------PR--NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET 155 (215)
Q Consensus 92 ~~~~~--~~~~~iidg~----------~~--~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~ 155 (215)
+... .+..+++|.+ +. .......+... ....||++|||++|++++.+|+.+| ++.+.. .
T Consensus 75 -i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R--~~~~~~--~ 149 (197)
T 2z0h_A 75 -IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL--NRFEKR--E 149 (197)
T ss_dssp -HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-----CCCCCH--H
T ss_pred -HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhcc--CcccHH--H
Confidence 2111 2678999954 21 22322222211 4567999999999999999999988 554433 4
Q ss_pred HHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028031 156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
+.+++...+.. +...+ ...++++|++.++++++++|...+.....
T Consensus 150 ~~~~~~~~~~~---~~~~~--~~~~~~Id~~~~~e~~~~~i~~~l~~~l~ 194 (197)
T 2z0h_A 150 FLERVREGYLV---LAREH--PERIVVLDGKRSIEEIHRDVVREVKRRWK 194 (197)
T ss_dssp HHHHHHHHHHH---HHHHC--TTTEEEEETTSCHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHH---HHHhC--CCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 44444332211 11111 33578899999999999999999987543
No 31
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.80 E-value=2.1e-18 Score=122.10 Aligned_cols=152 Identities=16% Similarity=0.204 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
++|+|+|+|||||||+++.|++.+++.+++.|.+..... .. ....... ..+. .+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~~----------------~~~~~~~-~~l~--~~~~v 58 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----GN----------------EKLFEHF-NKLA--DEDNV 58 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----CH----------------HHHHHHH-HHHT--TCCSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----HH----------------HHHHHHH-HHHH--hCCCe
Confidence 479999999999999999999999999999876654321 00 0001111 1121 25666
Q ss_pred EEeCCC---------------CCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhc
Q 028031 102 LIDGFP---------------RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES 166 (215)
Q Consensus 102 iidg~~---------------~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~ 166 (215)
+.|.+. ........+.. ....|+.+|||++|++++.+|+.+| +++....+.+.+....|..
T Consensus 59 i~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~l~~~~e~~~~R~~~r--~r~~~~~~~~~~~~~~~~~- 134 (173)
T 3kb2_A 59 IIDRFVYSNLVYAKKFKDYSILTERQLRFIED-KIKAKAKVVYLHADPSVIKKRLRVR--GDEYIEGKDIDSILELYRE- 134 (173)
T ss_dssp EEESCHHHHHHHTTTBTTCCCCCHHHHHHHHH-HHTTTEEEEEEECCHHHHHHHHHHH--SCSCCCHHHHHHHHHHHHH-
T ss_pred EEeeeecchHHHHHHHHHhhHhhHHHHHHHhc-cCCCCCEEEEEeCCHHHHHHHHHhc--CCcchhhhHHHHHHHHHHH-
Confidence 777421 12223333343 4467899999999999999999988 5544444333222222222
Q ss_pred chhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhCCCcc
Q 028031 167 SLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 167 ~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~~~~~ 205 (215)
....|. ...+++|++ .++++++++|...++...+
T Consensus 135 ---~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~~~~ 169 (173)
T 3kb2_A 135 ---VMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVELEHH 169 (173)
T ss_dssp ---HHHTCS--SCEEEEETTTSCHHHHHHHHHHHHHHGGG
T ss_pred ---HHhhcC--CCEEEEECCCCCHHHHHHHHHHHHhCCCc
Confidence 112122 357888887 5999999999998875443
No 32
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.80 E-value=2.8e-18 Score=125.32 Aligned_cols=173 Identities=18% Similarity=0.212 Sum_probs=108.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC--CCCH-HHH--------
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPS-EVT-------- 85 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~-------- 85 (215)
++++|+|+|++||||||+++.|++.++ +.++.... +.+++.++.+.+++..+. .+.. ...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~------p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~ 78 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTRE------PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARA 78 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEES------SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccC------CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999984 44443211 234455556666665543 1222 111
Q ss_pred ---HHHHHHHHHccCCCeEEEeCCCC------------CHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc-CC
Q 028031 86 ---IKLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN-QG 147 (215)
Q Consensus 86 ---~~~~~~~~~~~~~~~~iidg~~~------------~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~-~~ 147 (215)
.+.+..++. .+..||.|.|.. ..+++..+... ..+.||++|||++|++++.+|+.+|. ..
T Consensus 79 ~~~~~~i~p~l~--~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~d 156 (213)
T 4edh_A 79 QHLAGVIRPALA--RGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLD 156 (213)
T ss_dssp HHHHHTHHHHHH--TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCC
T ss_pred HHHHHHHHHHHH--CCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcC
Confidence 122223333 288999996432 23444443331 46899999999999999999999882 12
Q ss_pred CCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028031 148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
+.+.....+.++....+. .+...+ +..+++||++.++++++++|.+.+.....
T Consensus 157 r~E~~~~~~~~rv~~~y~---~l~~~~--~~~~~vIDa~~s~eeV~~~I~~~l~~~l~ 209 (213)
T 4edh_A 157 RFEQEDRRFFEAVRQTYL---QRAAQA--PERYQVLDAGLPLAEVQAGLDRLLPNLLE 209 (213)
T ss_dssp TTTTSCHHHHHHHHHHHH---HHHHHC--TTTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH---HHHHHC--CCcEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 332222344444433222 111112 34689999999999999999988875543
No 33
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.79 E-value=4.4e-18 Score=124.13 Aligned_cols=172 Identities=16% Similarity=0.268 Sum_probs=106.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC---C-eEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-----CCCCHH-HH----
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---Y-THLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE-VT---- 85 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~---~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~---- 85 (215)
++++|+|+|++||||||+++.|++.+. + .++.. ++ +.+++.++.+.+.+... ..+... ..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~ 75 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT----RE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFY 75 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE----ES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee----eC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHH
Confidence 367999999999999999999999983 3 22211 11 23445555555555421 122211 11
Q ss_pred -------HHHHHHHHHccCCCeEEEeCCCC------------CHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028031 86 -------IKLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 86 -------~~~~~~~~~~~~~~~~iidg~~~------------~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
.+.+..++.. |..||.|.|.. ..+++..+... ..+.||++|||++|++++.+|+.+|
T Consensus 76 A~R~~~~~~~i~paL~~--g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R 153 (213)
T 4tmk_A 76 AARVQLVETVIKPALAN--GTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARAR 153 (213)
T ss_dssp HHHHHHHHHTHHHHHHT--TCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC--CCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 1223334433 89999996432 23444333332 5679999999999999999999988
Q ss_pred c-CCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028031 145 N-QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 145 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
. ..+.+.....+.++....+.. + ......+++||++.++++++++|.+.+.....
T Consensus 154 ~~~dr~E~~~~~f~~rv~~~y~~---l---a~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~ 209 (213)
T 4tmk_A 154 GELDRIEQESFDFFNRTRARYLE---L---AAQDKSIHTIDATQPLEAVMDAIRTTVTHWVK 209 (213)
T ss_dssp SSCCTTTTSCHHHHHHHHHHHHH---H---HHTCTTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred CCccchhhhHHHHHHHHHHHHHH---H---HHHCCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 1 122222223344444322211 1 12225689999999999999999988875543
No 34
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.79 E-value=4.2e-18 Score=121.44 Aligned_cols=162 Identities=20% Similarity=0.258 Sum_probs=90.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH-HhCCeEeeHHHHHHHHHHcCCC-----cHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVE-HFGYTHLSAGDLLRAEIKSGSE-----NGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~-~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (215)
|.+|+|+|+|||||||+++.|++ .+++.+++.|. ++..+..... +....... ........+...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~-~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILY 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHH-HHHHhhCCCccchhhhchhhhhH-------HHHHHHHHHHHHHh
Confidence 57899999999999999999999 68999999854 5554443211 11111110 01222344555552
Q ss_pred c-cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHH
Q 028031 95 E-SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV 171 (215)
Q Consensus 95 ~-~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (215)
. ..+.++|+|+++........|..+ ....+..+|||++|++++.+|+.+| +......+.+.+++..|...
T Consensus 74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~i~~~~~~~~~~----- 146 (181)
T 1ly1_A 74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMREY----- 146 (181)
T ss_dssp SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC--GGGCCCHHHHHHHHHHHHHH-----
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcc--ccCCCCHHHHHHHHHHhhcc-----
Confidence 2 238899999988776655555532 1223457999999999999999988 33344566777776666542
Q ss_pred HHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 172 ~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
.... .+++|++.+ ++++..|...+..
T Consensus 147 ---~~~~-~~~id~~~~-~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 147 ---LGLP-VYNGTPGKP-KAVIFDVDGTLAK 172 (181)
T ss_dssp ---HTCC-CC---------------------
T ss_pred ---CCCC-ccccCCCCC-ceeeehhhhhhhc
Confidence 1111 234777654 7777777776654
No 35
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.79 E-value=3.5e-19 Score=131.72 Aligned_cols=178 Identities=15% Similarity=0.191 Sum_probs=103.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC---CCCCHH-HH----------
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG---KIVPSE-VT---------- 85 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~---------- 85 (215)
++.+|+|+|++||||||+++.|++.++...++...++++ +.+++.++.+.+.+..+ ...... ..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~ 103 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL 103 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999984321110011111 23455556666655421 112211 11
Q ss_pred -HHHHHHHHHccCCCeEEEeCCCC------------CHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc-CCCC
Q 028031 86 -IKLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN-QGRE 149 (215)
Q Consensus 86 -~~~~~~~~~~~~~~~~iidg~~~------------~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~-~~~~ 149 (215)
.+.+..++.. +..||.|.|.. ..+++..+... ..+.||++|||++|++++.+|+.+|. ..+.
T Consensus 104 ~~~~I~paL~~--g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~ 181 (236)
T 3lv8_A 104 VENVIKPALAR--GEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRI 181 (236)
T ss_dssp HHHTHHHHHHT--TCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTT
T ss_pred HHHHHHHHHHc--CCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchh
Confidence 1223333332 88999996431 23333333321 46799999999999999999999881 1222
Q ss_pred CCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcccc
Q 028031 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKV 207 (215)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~~ 207 (215)
+....++.++....+. ........+++||++.+++++.++|.+.+.....+.
T Consensus 182 E~~~~~~~~rv~~~y~------~la~~~~~~~vIDa~~sieeV~~~I~~~l~~~l~~~ 233 (236)
T 3lv8_A 182 EKMDISFFERARERYL------ELANSDDSVVMIDAAQSIEQVTADIRRALQDWLSQV 233 (236)
T ss_dssp TTSCHHHHHHHHHHHH------HHHHHCTTEEEEETTSCHHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHHHHH------HHHHHCCCEEEEeCCCCHHHHHHHHHHHHHHHHHhh
Confidence 2222344444443221 112222238999999999999999998887665443
No 36
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.79 E-value=2.6e-17 Score=118.60 Aligned_cols=165 Identities=16% Similarity=0.213 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHH-cCCCcHHHHHHHHHcCCCCCH--HHHHHH----H
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPS--EVTIKL----L 89 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~ 89 (215)
++|+|+|+|||||||+++.|+++++ +.+++.|+++++.+. .....+.. ......+. ...... +
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i 76 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRD-----EMRKLSVEKQKKLQIDAAKGI 76 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHH-----HHTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchh-----hhhcCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999998 888988888876652 22111110 00111111 111111 2
Q ss_pred HHHHHccCCCeEEEeCCCCCHHH--------HHHHHHhcCCCCcEEEEEecCHHHHHHH-Hhh--ccCCC-CCCcHHHH-
Q 028031 90 QKAMEESGNDKFLIDGFPRNEEN--------RAAFEAVTKIEPEFVLFFDCSEEEMERR-ILN--RNQGR-EDDNVETI- 156 (215)
Q Consensus 90 ~~~~~~~~~~~~iidg~~~~~~~--------~~~~~~~~~~~~~~~i~L~~~~e~~~~R-~~~--r~~~~-~~~~~~~~- 156 (215)
...+....+..||+||++....+ ...+.. ..|+.+|||++|++++.+| +.+ | ++ +....+.+
T Consensus 77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~vi~l~~~~~~~~~rr~~~~~R--~~~~~~~~~~~~ 151 (194)
T 1nks_A 77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE---INPSVIFLLEADPKIILSRQKRDTTR--NRNDYSDESVIL 151 (194)
T ss_dssp HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH---HCCSEEEEEECCHHHHHHHHHHCTTT--CCCCCCSHHHHH
T ss_pred HHHhhccCCCEEEECCchhhccccccccCCCHHHHHh---cCCCEEEEEeCCHHHHHHHHHhhccc--CCCCccCHHHHH
Confidence 22221123789999987421111 222332 2478999999999998855 766 6 44 32233322
Q ss_pred -HHHHHHHhhcchhHHHHHHhcCcEEEE-cCCCCHHHHHHHHHHhh
Q 028031 157 -RKRFKVFLESSLPVVQYYEAKGKVRKI-DAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 157 -~~~~~~~~~~~~~~~~~~~~~~~~~~i-d~~~~~~e~~~~i~~~l 200 (215)
..++...+. .....+. ...++++ |++.++++++++|.+.+
T Consensus 152 ~~~~~~~~~~---~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 152 ETINFARYAA---TASAVLA-GSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHHHHHHHH---HHHHHHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 222222221 1122221 2456788 88899999999998775
No 37
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.78 E-value=5.4e-19 Score=127.28 Aligned_cols=166 Identities=15% Similarity=0.236 Sum_probs=97.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCC--cHHHHHHHHHcCCCCCH---HHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSE--NGTMIQNMIKEGKIVPS---EVTIKLLQ 90 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~ 90 (215)
+++|+|+|+|||||||+++.|+++++ +.+++.|++++........ .... . ..... ......+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~ 75 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQ------M-RKMDPETQKRIQKMAG 75 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGG------G-SSCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHH------H-hcCCHHHHHHHHHHHH
Confidence 57899999999999999999999998 9999999998876543211 0000 0 11111 11111222
Q ss_pred HHHHc-cCCCeEEEeCCCCCHHHH--------HHHHHhcCCCCcEEEEEecCHHHHHH-HHhh--ccCCCCCCcHHHHHH
Q 028031 91 KAMEE-SGNDKFLIDGFPRNEENR--------AAFEAVTKIEPEFVLFFDCSEEEMER-RILN--RNQGREDDNVETIRK 158 (215)
Q Consensus 91 ~~~~~-~~~~~~iidg~~~~~~~~--------~~~~~~~~~~~~~~i~L~~~~e~~~~-R~~~--r~~~~~~~~~~~~~~ 158 (215)
..+.. ..+..+|+||++...... ..+.. . .|+++|||++|++++.+ |+.. | +++....+.+..
T Consensus 76 ~~i~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~l~~~~~~~~~rRl~~~~R--~r~~~~~~~~~~ 150 (192)
T 1kht_A 76 RKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNE-L--NPDLIIVVETTGDEILMRRMSDETR--VRDLDTASTIEQ 150 (192)
T ss_dssp HHHHHHHTTSCEEEECCSEEEETTEEEESSCHHHHHH-H--CCSEEEEEECCHHHHHHHHHTSSSC--SSSCCCHHHHHH
T ss_pred HHHHhhccCCeEEEccceeccccccccccCcHHHHhc-c--CCCEEEEEeCCHHHHHHHHhhhccc--CCCcCCHHHHHH
Confidence 22211 125678999865311100 12222 1 47889999999999996 8887 6 555555554443
Q ss_pred HHHHHhhcchhHHHHHHhcCcEEEE-cCCCCHHHHHHHHHHhh
Q 028031 159 RFKVFLESSLPVVQYYEAKGKVRKI-DAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~i-d~~~~~~e~~~~i~~~l 200 (215)
+...... .......|.. ..++++ |.+.+++++++.|...+
T Consensus 151 ~~~~~~~-~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 151 HQFMNRC-AAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp HHHHHHH-HHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence 3222211 1111222322 334555 44556999999998776
No 38
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.78 E-value=3.8e-19 Score=130.16 Aligned_cols=172 Identities=15% Similarity=0.159 Sum_probs=101.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHH-----------
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI----------- 86 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 86 (215)
+.++++|+|+|+|||||||+++.|++.++..+++. +.++.. ..+...+..+..++..+...+.....
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHM 84 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 44678999999999999999999999987654443 111110 00122223333333333333322111
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCH---HH------HHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHH
Q 028031 87 KLLQKAMEESGNDKFLIDGFPRNE---EN------RAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET 155 (215)
Q Consensus 87 ~~~~~~~~~~~~~~~iidg~~~~~---~~------~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~ 155 (215)
..+...+.. +..+|+|+++... .. ...+..+ ....|+.+|||++|++++.+|+.+| ..+.. . +.
T Consensus 85 ~~i~~~l~~--~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r-~~r~~-~-~~ 159 (212)
T 2wwf_A 85 NEIKSLLLK--GIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG-EEIYE-K-VE 159 (212)
T ss_dssp HHHHHHHHH--TCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT-SSTTC-S-HH
T ss_pred HHHHHHHhC--CCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC-ccccc-H-HH
Confidence 112222222 6789999876321 00 0111111 2357899999999999999998754 12222 2 45
Q ss_pred HHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
+.+++...+.... .....++||++.++++++++|...+...
T Consensus 160 ~~~~~~~~~~~~~-------~~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 160 TQKKIYETYKHFA-------HEDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp HHHHHHHHGGGGT-------TCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHh-------ccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 5566543332211 1335788999999999999999999776
No 39
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.78 E-value=1.5e-17 Score=120.11 Aligned_cols=166 Identities=16% Similarity=0.266 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH----------HHH
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT----------IKL 88 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 88 (215)
++|+|+|+.||||||.++.|++.+ |..++.... +.++..++.+...+......+.... ...
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999988 444443210 1233333333333333222221111 222
Q ss_pred HHHHHHccCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028031 89 LQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (215)
Q Consensus 89 ~~~~~~~~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~ 154 (215)
+...+. .|..||.|.|..+ .++...+... ..+.||+.|||++|++++.+|...+ .+.+. .
T Consensus 75 I~~~L~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~--dr~e~-~- 148 (197)
T 3hjn_A 75 IKQYLS--EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL--NRFEK-R- 148 (197)
T ss_dssp HHHHHT--TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-----CTTCC-H-
T ss_pred HHHHHH--CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCc--Ccccc-H-
Confidence 333333 2889999975422 2333332221 5678999999999999999997665 44332 2
Q ss_pred HHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028031 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (215)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~ 204 (215)
++.++....+. .+.. ..+..+++||++.+++++.++|.+.++..+
T Consensus 149 ef~~rv~~~y~---~la~--~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl 193 (197)
T 3hjn_A 149 EFLERVREGYL---VLAR--EHPERIVVLDGKRSIEEIHRDVVREVKRRW 193 (197)
T ss_dssp HHHHHHHHHHH---HHHH--HCTTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHH---HHHH--hCCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 34444332221 1111 123468999999999999999999998754
No 40
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.77 E-value=9.7e-17 Score=113.62 Aligned_cols=163 Identities=18% Similarity=0.253 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
++|+|+|+|||||||+++.|++.+|+.+++.|++.+.. .+....+.+.. .+..........++. .+. .+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~--~g~~~~~~~~~---~~~~~~~~~~~~~~~-~l~--~~~~v 74 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT--SGMTVADVVAA---EGWPGFRRRESEALQ-AVA--TPNRV 74 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH--HCSCHHHHHHH---HHHHHHHHHHHHHHH-HHC--CSSEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH--hCCCHHHHHHH---cCHHHHHHHHHHHHH-Hhh--cCCeE
Confidence 57999999999999999999999999999999887764 22222221111 000000111112222 222 23444
Q ss_pred EEeCC--CCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh--hccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhc
Q 028031 102 LIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL--NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK 177 (215)
Q Consensus 102 iidg~--~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (215)
+.+|. +........+.. ++.+|||++|++++.+|+. .|...++....+...+++..+.....+. |..
T Consensus 75 i~~g~~~~~~~~~~~~l~~-----~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~- 145 (173)
T 1e6c_A 75 VATGGGMVLLEQNRQFMRA-----HGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREAL---YQD- 145 (173)
T ss_dssp EECCTTGGGSHHHHHHHHH-----HSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHH---HHH-
T ss_pred EECCCcEEeCHHHHHHHHc-----CCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHH---HHh-
Confidence 44442 222233333332 5789999999999999998 6621233333344455555544332222 333
Q ss_pred CcEEEEcCC-CCHHHHHHHHHHhhCC
Q 028031 178 GKVRKIDAA-KPVAEVFDAVKAVFTP 202 (215)
Q Consensus 178 ~~~~~id~~-~~~~e~~~~i~~~l~~ 202 (215)
..++||++ .+++++++.|...+..
T Consensus 146 -~~~~Id~~~~~~~~~~~~i~~~l~~ 170 (173)
T 1e6c_A 146 -VAHYVVDATQPPAAIVCELMQTMRL 170 (173)
T ss_dssp -HCSEEEETTSCHHHHHHHHHHHTTC
T ss_pred -CcEEEECCCCCHHHHHHHHHHHhcc
Confidence 23567776 7999999999988853
No 41
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.77 E-value=6.3e-18 Score=123.63 Aligned_cols=171 Identities=13% Similarity=0.154 Sum_probs=95.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCe--Eee----HHHHHHHHHHcCC---CcHHHHHHHHHcCCCCCHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLS----AGDLLRAEIKSGS---ENGTMIQNMIKEGKIVPSEVTIKLLQ 90 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~--~i~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (215)
++++|+|+|+|||||||+++.|++.++.. ++. .++.++..+..+. .........+..... .......+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~i~ 80 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDF--SDRYERYIL 80 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHH--HHHHHHTHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHH--HHHHHHHHH
Confidence 46899999999999999999999999863 333 2333443332211 011110000000000 000011122
Q ss_pred HHHHccCCCeEEEeCCCCCH-----------HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh-hccC-CCC--------
Q 028031 91 KAMEESGNDKFLIDGFPRNE-----------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL-NRNQ-GRE-------- 149 (215)
Q Consensus 91 ~~~~~~~~~~~iidg~~~~~-----------~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~-~r~~-~~~-------- 149 (215)
..+. .+..+|+|+++.+. ++...+.. ....++++|||++|++++.+|+. +|.. .+.
T Consensus 81 ~~l~--~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~ 157 (213)
T 2plr_A 81 PMLK--SGFIVISDRYIYTAYARDSVRGVDIDWVKKLYS-FAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFP 157 (213)
T ss_dssp HHHH--TTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTT-TSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCT
T ss_pred HHHh--CCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccccccccccccccccc
Confidence 2222 37889999976432 11222222 34568999999999999999998 7721 110
Q ss_pred -C---CcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 150 -D---DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 150 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
. +..+.+.+++..++.. +.....+++||++.++++++++|...+..
T Consensus 158 ~~d~~e~~~~~~~r~~~~~~~-------~~~~~~~~~Id~~~~~e~v~~~I~~~l~~ 207 (213)
T 2plr_A 158 GLSPEEGFLKYQGLITEVYDK-------LVKDENFIVIDGTKTPKEIQIQIRKFVGE 207 (213)
T ss_dssp TSCHHHHHHHHHHHHHHHHHH-------HTTTTTCEEEETTSCHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHHH-------HHhhCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 0 0112333333332211 11111578999999999999999988854
No 42
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.77 E-value=1.2e-17 Score=121.35 Aligned_cols=169 Identities=17% Similarity=0.241 Sum_probs=98.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-----------H
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------I 86 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 86 (215)
.++++|+|+|++||||||+++.|++.+ |+.+++.+... .....+..+...+..+........ .
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~ 76 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFA 76 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999998 57666532100 011223333344333222222111 0
Q ss_pred HHHHHHHHccCCCeEEEeCCCCC-----------HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHH
Q 028031 87 KLLQKAMEESGNDKFLIDGFPRN-----------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET 155 (215)
Q Consensus 87 ~~~~~~~~~~~~~~~iidg~~~~-----------~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~ 155 (215)
..+...+. .+..+|+|+|+.+ .+....+.. ....||.+|||++|++++.+ +|...+.+ ...
T Consensus 77 ~~i~~~l~--~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~-~~~~~d~vi~l~~~~e~~~~---~R~~d~~e--~~~ 148 (204)
T 2v54_A 77 SFIQEQLE--QGITLIVDRYAFSGVAYAAAKGASMTLSKSYES-GLPKPDLVIFLESGSKEINR---NVGEEIYE--DVT 148 (204)
T ss_dssp HHHHHHHH--TTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHT-TSBCCSEEEEECCCHHHHTT---CCSSSTTC--CSH
T ss_pred HHHHHHHH--CCCEEEEECchhhHHHHHHccCCCHHHHHHHhc-CCCCCCEEEEEeCCHHHHHh---hcCccccc--HHH
Confidence 12222332 2678999987642 222222222 34579999999999999877 44111111 124
Q ss_pred HHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028031 156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
+.+++...+..... .....++++|++.++++++++|.+.+.....
T Consensus 149 ~~~rl~~~y~~~~~-----~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l~ 193 (204)
T 2v54_A 149 FQQKVLQEYKKMIE-----EGDIHWQIISSEFEEDVKKELIKNIVIEAIH 193 (204)
T ss_dssp HHHHHHHHHHHHHT-----TCSSCEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----hCCCcEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 55555442221110 1123578999999999999999988865544
No 43
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.77 E-value=2.9e-17 Score=119.67 Aligned_cols=164 Identities=16% Similarity=0.142 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCC-----CC---------------
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----VP--------------- 81 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------------- 81 (215)
++|+|+|++||||||+++.|++ +|+.+++.|++.+.....+......+...+..... ..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 5899999999999999999988 99999999998876432221111111111111000 00
Q ss_pred ---HHH----HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028031 82 ---SEV----TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (215)
Q Consensus 82 ---~~~----~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~ 154 (215)
... ....+...+....+..+|+|+....... +. ..+|.+|||++|++++.+|+.+| . ....+
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~---~~----~~~d~vi~l~~~~e~~~~Rl~~R--~--~~~~e 150 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENK---LT----ALCDRILVVDVSPQTQLARSAQR--D--NNNFE 150 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTT---CG----GGCSEEEEEECCHHHHHHHHC---------CHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcC---cH----hhCCEEEEEECCHHHHHHHHHHc--C--CCCHH
Confidence 000 0111112222223568888974321111 22 23678999999999999999877 2 33456
Q ss_pred HHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHH----HHHHHHHHhhCCC
Q 028031 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVA----EVFDAVKAVFTPK 203 (215)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----e~~~~i~~~l~~~ 203 (215)
.+.+++... .+....+... . ++||++.+++ ++.++|...+...
T Consensus 151 ~~~~r~~~q----~~~~~~~~~a-d-~vIdn~~~~~~~~~~~~~~i~~~~~~~ 197 (206)
T 1jjv_A 151 QIQRIMNSQ----VSQQERLKWA-D-DVINNDAELAQNLPHLQQKVLELHQFY 197 (206)
T ss_dssp HHHHHHHHS----CCHHHHHHHC-S-EEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----CChHHHHHhC-C-EEEECCCCccccHHHHHHHHHHHHHHH
Confidence 666766541 1223334332 3 6777777999 9999998887643
No 44
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.76 E-value=6.7e-17 Score=115.75 Aligned_cols=168 Identities=13% Similarity=0.161 Sum_probs=97.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCe
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (215)
+..|+|+|+|||||||+++.|++.+|+.+++.|++..... +....+.+... +...........+...... ...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~--g~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~--~~~ 77 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT--GADIAWIFEME---GEAGFRRREREMIEALCKL--DNI 77 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH--TSCHHHHHHHH---HHHHHHHHHHHHHHHHHHS--SSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc--CCChhhHHHHh---CHHHHHHHHHHHHHHHHhc--CCc
Confidence 5689999999999999999999999999999998877642 22222222111 1111112223333333222 334
Q ss_pred EEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHH--hhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028031 101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI--LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (215)
Q Consensus 101 ~iidg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (215)
++..| ..........+.. ...+|||++|++++.+|+ ..+ ..++........+++........+. |..
T Consensus 78 vi~~gg~~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~~-~~rp~~~~~~~~~~l~~~~~~r~~~---y~~ 148 (185)
T 3trf_A 78 ILATGGGVVLDEKNRQQISE-----TGVVIYLTASIDTQLKRIGQKGE-MRRPLFIKNNSKEKLQQLNEIRKPL---YQA 148 (185)
T ss_dssp EEECCTTGGGSHHHHHHHHH-----HEEEEEEECCHHHHHHHHHCCTT-CSSCCCCCHHHHHHHHHHHHHHHHH---HHH
T ss_pred EEecCCceecCHHHHHHHHh-----CCcEEEEECCHHHHHHHHhhcCC-CCCCCCCCCCHHHHHHHHHHHHHHH---Hhh
Confidence 44443 2233333444443 247999999999999999 443 1233333333334444433333333 333
Q ss_pred cCcEEEEcCC-CCHHHHHHHHHHhhCCCcc
Q 028031 177 KGKVRKIDAA-KPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 177 ~~~~~~id~~-~~~~e~~~~i~~~l~~~~~ 205 (215)
... ++||++ .+++++++.|...+.....
T Consensus 149 ~ad-~~Idt~~~~~~e~~~~I~~~l~~~~~ 177 (185)
T 3trf_A 149 MAD-LVYPTDDLNPRQLATQILVDIKQTYS 177 (185)
T ss_dssp HCS-EEEECTTCCHHHHHHHHHHHSCC---
T ss_pred cCC-EEEECCCCCHHHHHHHHHHHHHHHhh
Confidence 233 556664 4899999999999987654
No 45
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.76 E-value=6.4e-17 Score=123.21 Aligned_cols=170 Identities=16% Similarity=0.136 Sum_probs=103.9
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-----CCCCH---------
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPS--------- 82 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--------- 82 (215)
.++++++|+|+|++||||||+|+.|+ .+|+.+++.|++.+.....+......+...+... ..+..
T Consensus 71 ~~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~ 149 (281)
T 2f6r_A 71 LPSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFG 149 (281)
T ss_dssp SCTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhC
Confidence 34568899999999999999999999 6899999999998765444332222222111100 00000
Q ss_pred --H-------H----HHHHHHHHH---HccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccC
Q 028031 83 --E-------V----TIKLLQKAM---EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146 (215)
Q Consensus 83 --~-------~----~~~~~~~~~---~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~ 146 (215)
. . ....+...+ ...+...+|+||...... .|. ..+|.+|||++|++++.+|+.+|
T Consensus 150 ~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~----~~~d~vI~l~a~~ev~~~Rl~~R-- 220 (281)
T 2f6r_A 150 NKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQ----SMVHEVWTVVIPETEAVRRIVER-- 220 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGG----GGCSEEEEEECCHHHHHHHHHHH--
T ss_pred CHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chH----HhCCEEEEEcCCHHHHHHHHHHc--
Confidence 0 0 000111111 112246899999642211 111 23689999999999999999987
Q ss_pred CCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028031 147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (215)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~ 204 (215)
. ....+.+.+++.... +...++. ... ++||++.+++++.++|...+....
T Consensus 221 ~--g~s~e~~~~ri~~q~----~~~~~~~-~AD-~vIdn~~s~eel~~~I~~~l~~l~ 270 (281)
T 2f6r_A 221 D--GLSEAAAQSRLQSQM----SGQQLVE-QSN-VVLSTLWESHVTQSQVEKAWNLLQ 270 (281)
T ss_dssp H--CCCHHHHHHHHHTSC----CHHHHHH-TCS-EEEECSSCHHHHHHHHHHHHHHHH
T ss_pred C--CCCHHHHHHHHHHcC----ChHhhHh-hCC-EEEECCCCHHHHHHHHHHHHHHHH
Confidence 2 234566666655431 2222222 233 567777899999999998886543
No 46
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.76 E-value=3.6e-16 Score=110.97 Aligned_cols=161 Identities=14% Similarity=0.174 Sum_probs=95.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHH----HHcCCCcHH-HHHHHHHcCCCCCHHHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKAM 93 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (215)
.++.+|+|+|++||||||+++.|++.+|+.+++.|++.... ...+..... .....+ ......+...+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~ 77 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL--------QALNDAAFAMQ 77 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHH--------HHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHH--------HHHHHHHHHHH
Confidence 45679999999999999999999999999999987763210 011111111 000000 01112222222
Q ss_pred HccCCCeEEEeCCCCCHHHHHHHHHhcCCCCc-EEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHH
Q 028031 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ 172 (215)
Q Consensus 94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~-~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (215)
.. +..+|+|...........+.. . .++ .+|||++|++++.+|+.+| +........+...+..+. +.
T Consensus 78 ~~--~~~~vi~~~~~~~~~~~~l~~-~--~~~~~vv~l~~~~e~~~~R~~~R--~~~~~~~~~~~~~~~~~~----~~-- 144 (175)
T 1knq_A 78 RT--NKVSLIVCSALKKHYRDLLRE-G--NPNLSFIYLKGDFDVIESRLKAR--KGHFFKTQMLVTQFETLQ----EP-- 144 (175)
T ss_dssp HH--CSEEEEECCCCSHHHHHHHHT-T--CTTEEEEEEECCHHHHHHHHHTS--TTCCCCHHHHHHHHHHCC----CC--
T ss_pred hc--CCcEEEEeCchHHHHHHHHHh-c--CCCEEEEEEECCHHHHHHHHHhc--cCCCCchHHHHHHHHhhh----Cc--
Confidence 21 567888853333333334433 2 234 6999999999999999988 322222333333322211 11
Q ss_pred HHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028031 173 YYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 173 ~~~~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
.|.. ...++||++.++++++++|...+.
T Consensus 145 ~~~~-~~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 145 GADE-TDVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp CTTC-TTEEEEECSSCHHHHHHHHHHHHH
T ss_pred ccCC-CCeEEEeCCCCHHHHHHHHHHHHh
Confidence 0222 236788888899999999998774
No 47
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.75 E-value=2.2e-16 Score=114.55 Aligned_cols=162 Identities=14% Similarity=0.142 Sum_probs=98.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHH-------HHHHHH
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV-------TIKLLQ 90 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 90 (215)
..++.+|+|+|++||||||+++.|++.+|..+++.+++...... .....+....+.. ....+.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENI----------ATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHH----------HHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHH----------HHHhcCCCCCCcccccHHHHHHHHHH
Confidence 34678999999999999999999999999999998775321100 0001111111111 111222
Q ss_pred HHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhH
Q 028031 91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV 170 (215)
Q Consensus 91 ~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (215)
..+. .+..+|+|...........+.. ...+..+|||++|++++.+|+.+| +......+.+...+..+.. .
T Consensus 96 ~~~~--~g~~viid~~~~~~~~~~~l~~--~~~~~~vv~l~~~~e~l~~Rl~~R--~~~~~~~~~l~~~~~~~~~----~ 165 (200)
T 4eun_A 96 ARAD--AGVSTIITCSALKRTYRDVLRE--GPPSVDFLHLDGPAEVIKGRMSKR--EGHFMPASLLQSQLATLEA----L 165 (200)
T ss_dssp HHHH--TTCCEEEEECCCCHHHHHHHTT--SSSCCEEEEEECCHHHHHHHHTTC--SCCSSCGGGHHHHHHHCCC----C
T ss_pred HHHh--cCCCEEEEchhhhHHHHHHHHH--hCCceEEEEEeCCHHHHHHHHHhc--ccCCCCHHHHHHHHHHhCC----C
Confidence 2222 2567788875444444444443 233557999999999999999988 3222223333333322211 1
Q ss_pred HHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 171 VQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 171 ~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
|... ..++||++.++++++++|...+...
T Consensus 166 ---~~~~-~~~~Id~~~~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 166 ---EPDE-SGIVLDLRQPPEQLIERALTWLDIA 194 (200)
T ss_dssp ---CTTS-CEEEEETTSCHHHHHHHHHHHHCCC
T ss_pred ---CCCC-CeEEEECCCCHHHHHHHHHHHHHhc
Confidence 2221 4678888889999999999999754
No 48
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.75 E-value=7.7e-17 Score=121.53 Aligned_cols=166 Identities=19% Similarity=0.227 Sum_probs=102.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH---hCCeEe--eHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH---FGYTHL--SAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~---~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (215)
.++++|+|+|+|||||||+++.|++. .|+.++ +.|.+ +..+..-...++.. ........+...+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~-~~~l~~~~~~~e~~----------~~~~~~~~i~~~l 70 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI-RESFPVWKEKYEEF----------IKKSTYRLIDSAL 70 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH-HTTSSSCCGGGHHH----------HHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH-HHHHhhhhHHHHHH----------HHHHHHHHHHHHh
Confidence 45789999999999999999999998 677776 76553 33211100001100 0011123344443
Q ss_pred HccCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHH
Q 028031 94 EESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV 171 (215)
Q Consensus 94 ~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (215)
. ...+|+|+.+........+... ....++.+|||++|++++.+|+.+| ++. ...+.+.+....|.. +.
T Consensus 71 ~---~~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R--~~~-~~~~~l~~~~~~~e~---~~- 140 (260)
T 3a4m_A 71 K---NYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER--GEK-IPNEVIKKMYEKFDE---PG- 140 (260)
T ss_dssp T---TSEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHT--TCS-SCHHHHHHHHHHCCC---TT-
T ss_pred h---CCEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhC--CCC-CCHHHHHHHHHHhcC---cc-
Confidence 2 2789999976665555544432 3456789999999999999999988 432 233444433333322 11
Q ss_pred HHHHhcCcEEEEcCCC--CHHHHHHHHHHhhCCCcc
Q 028031 172 QYYEAKGKVRKIDAAK--PVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 172 ~~~~~~~~~~~id~~~--~~~e~~~~i~~~l~~~~~ 205 (215)
..|......++||++. +++++++.|...+....+
T Consensus 141 ~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~~~~~ 176 (260)
T 3a4m_A 141 KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEIPK 176 (260)
T ss_dssp SSCGGGCCSEEEETTSCCCHHHHHHHHHHHHTSCCC
T ss_pred ccCCCCCCEEEEeCCCCCCHHHHHHHHHhcccCCCC
Confidence 1122123457888865 899999999998876544
No 49
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.75 E-value=5.1e-17 Score=116.29 Aligned_cols=167 Identities=16% Similarity=0.214 Sum_probs=94.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCe
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (215)
+++|+|+|+|||||||+|+.|++.+|+.+++.|++.+... +....+.+. ..+...........+...... ...
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~--g~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~--~~~ 74 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRSIADIFA---TDGEQEFRRIEEDVVRAALAD--HDG 74 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSCHHHHHH---HHCHHHHHHHHHHHHHHHHHH--CCS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc--CCCHHHHHH---HhChHHHHHHHHHHHHHHHhc--CCe
Confidence 3579999999999999999999999999999999877653 222211111 112111112222333333222 334
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcE
Q 028031 101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180 (215)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (215)
++..|...... ...+.. .. .+.+|||++|++++.+|+.+|. +++........+++..+.....+ .|.... .
T Consensus 75 vi~~g~~~v~~-~~~~~~-l~--~~~vV~L~~~~e~~~~Rl~~r~-~r~~~~~~~~~~~i~~~~~~r~~---~~~~~~-~ 145 (184)
T 2iyv_A 75 VLSLGGGAVTS-PGVRAA-LA--GHTVVYLEISAAEGVRRTGGNT-VRPLLAGPDRAEKYRALMAKRAP---LYRRVA-T 145 (184)
T ss_dssp EEECCTTGGGS-HHHHHH-HT--TSCEEEEECCHHHHHHHTTCCC-CCSSTTSCCHHHHHHHHHHHHHH---HHHHHC-S
T ss_pred EEecCCcEEcC-HHHHHH-Hc--CCeEEEEeCCHHHHHHHHhCCC-CCCCccCCCHHHHHHHHHHHHHH---HHhccC-C
Confidence 44444221111 111222 11 4579999999999999998771 11111101122233333222112 233333 3
Q ss_pred EEEcCC-CCHHHHHHHHHHhhCCC
Q 028031 181 RKIDAA-KPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 181 ~~id~~-~~~~e~~~~i~~~l~~~ 203 (215)
++||++ .+++++++.|...+...
T Consensus 146 ~~Idt~~~s~ee~~~~I~~~l~~~ 169 (184)
T 2iyv_A 146 MRVDTNRRNPGAVVRHILSRLQVP 169 (184)
T ss_dssp EEEECSSSCHHHHHHHHHTTSCCC
T ss_pred EEEECCCCCHHHHHHHHHHHHhhc
Confidence 677776 79999999999988654
No 50
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.75 E-value=9.6e-18 Score=122.90 Aligned_cols=177 Identities=15% Similarity=0.236 Sum_probs=93.0
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHH---------
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI--------- 86 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 86 (215)
+++.++++|+|+|+|||||||+++.|++.++..+++.+. +++. ..+...+..+...+..+...+.....
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~ 81 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL-LRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWE 81 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-EESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHT
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE-eeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 345678899999999999999999999988543222210 0000 00111222223333222222221110
Q ss_pred --HHHHHHHHccCCCeEEEeCCCC------------CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028031 87 --KLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (215)
Q Consensus 87 --~~~~~~~~~~~~~~~iidg~~~------------~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~ 152 (215)
..+...+. .+..+|+|++.. ..++...+.. ....|+++|||++|++++.+|+..| ..+. +.
T Consensus 82 ~~~~i~~~l~--~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~Rl~r~-~~~~-~~ 156 (215)
T 1nn5_A 82 QVPLIKEKLS--QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV-GLPKPDLVLFLQLQLADAAKRGAFG-HERY-EN 156 (215)
T ss_dssp THHHHHHHHH--TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGT-TSBCCSEEEEEECCHHHHHHC------CTT-CS
T ss_pred HHHHHHHHHH--CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHhccC-cccc-ch
Confidence 12333332 267899995421 1222222222 2346899999999999999999643 1122 22
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028031 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
..+.+++...+..... .....++++|++.++++++++|...+.....
T Consensus 157 -~~~~~~~~~~~~~~~~-----~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~ 203 (215)
T 1nn5_A 157 -GAFQERALRCFHQLMK-----DTTLNWKMVDASKSIEAVHEDIRVLSEDAIA 203 (215)
T ss_dssp -HHHHHHHHHHHHHHTT-----CTTSCEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH-----hCCCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 2334443322111000 0123568889989999999999988865543
No 51
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.74 E-value=1.7e-16 Score=116.58 Aligned_cols=167 Identities=19% Similarity=0.201 Sum_probs=98.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHc-----CCCCCHHH---------
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEV--------- 84 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--------- 84 (215)
.++++|+|+|++||||||+++.|++ +|+.+++.|++.+.....+......+...+.. ...+....
T Consensus 2 ~~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~ 80 (218)
T 1vht_A 2 SLRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANP 80 (218)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCH
Confidence 4678999999999999999999988 99999999998877543332222222222210 00111111
Q ss_pred ---------HHHHHH----HHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028031 85 ---------TIKLLQ----KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (215)
Q Consensus 85 ---------~~~~~~----~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~ 151 (215)
....+. ..+....+..+++|+ +...+.. |. ..+|.+|||++|++++.+|+.+| + ..
T Consensus 81 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~~l~~~~--~~----~~~d~vi~l~~~~e~~~~Rl~~R--~--~~ 149 (218)
T 1vht_A 81 EEKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVENS--LY----KKANRVLVVDVSPETQLKRTMQR--D--DV 149 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTTT--GG----GGCSEEEEEECCHHHHHHHHHHH--H--TC
T ss_pred HHHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-eeeeccC--cc----ccCCEEEEEECCHHHHHHHHHHc--C--CC
Confidence 011111 112221244566665 2222211 22 24789999999999999999987 2 23
Q ss_pred cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
..+.+.+++.... +...+.. ... ++||++.+++++.++|...+...
T Consensus 150 ~~~~~~~~~~~~~----~~~~~~~-~ad-~vId~~~~~~~~~~~I~~~l~~~ 195 (218)
T 1vht_A 150 TREHVEQILAAQA----TREARLA-VAD-DVIDNNGAPDAIASDVARLHAHY 195 (218)
T ss_dssp CHHHHHHHHHHSC----CHHHHHH-HCS-EEEECSSCTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC----ChHHHHH-hCC-EEEECCCCHHHHHHHHHHHHHHH
Confidence 3455666655421 1222222 222 57777779999999988877643
No 52
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.73 E-value=4.1e-17 Score=115.07 Aligned_cols=159 Identities=16% Similarity=0.229 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
+.|+|+|+|||||||+++.|++.+++.+++.|++.+... +....+.+. ..+..........++. .+.. .+..|
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~--g~~~~~~~~---~~~~~~~~~~~~~~l~-~l~~-~~~~V 73 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE--GLSIPQIFE---KKGEAYFRKLEFEVLK-DLSE-KENVV 73 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHH---HSCHHHHHHHHHHHHH-HHTT-SSSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc--CCCHHHHHH---HhChHHHHHHHHHHHH-HHhc-cCCeE
Confidence 479999999999999999999999999999998877653 222221111 1111000111122222 2221 24445
Q ss_pred EEeCC--CCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC--cHHHHHHHHHHHhhcchhHHHHHHhc
Q 028031 102 LIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD--NVETIRKRFKVFLESSLPVVQYYEAK 177 (215)
Q Consensus 102 iidg~--~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (215)
|.+|. +........+. .++.+|||++|++++.+|+.+|. .++.. ..+.+.+++... ...|..
T Consensus 74 i~~g~~~~~~~~~~~~l~-----~~~~~i~l~~~~e~~~~R~~~r~-~r~~~~~~~~~i~~~~~~~-------~~~~~~- 139 (168)
T 2pt5_A 74 ISTGGGLGANEEALNFMK-----SRGTTVFIDIPFEVFLERCKDSK-ERPLLKRPLDEIKNLFEER-------RKIYSK- 139 (168)
T ss_dssp EECCHHHHTCHHHHHHHH-----TTSEEEEEECCHHHHHHHCBCTT-CCBGGGSCGGGTHHHHHHH-------HHHHTT-
T ss_pred EECCCCEeCCHHHHHHHH-----cCCEEEEEECCHHHHHHHHhCCC-CCCCCcchHHHHHHHHHHH-------HHHHHh-
Confidence 54441 22222222322 26799999999999999998761 12221 122233332211 122333
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 178 GKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 178 ~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
..+++ +++.++++++++|...+..
T Consensus 140 ~~~~i-~~~~~~~~~~~~i~~~l~~ 163 (168)
T 2pt5_A 140 ADIKV-KGEKPPEEVVKEILLSLEG 163 (168)
T ss_dssp SSEEE-ECSSCHHHHHHHHHHHHHT
T ss_pred CCEEE-CCCCCHHHHHHHHHHHHHh
Confidence 44566 7778999999999988853
No 53
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.73 E-value=2.6e-17 Score=120.54 Aligned_cols=170 Identities=14% Similarity=0.142 Sum_probs=91.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCC----eEee-HHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-------
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THLS-AGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT------- 85 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~----~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 85 (215)
..++++|+|+|++||||||+++.|++.++. .++. . ++ +.+++.++.+.+++...........
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~t----re--P~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~ 91 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLT----RE--PGGTLLNESVRNLLFKAQGLDSLSELLFFIAM 91 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEE----ES--SCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEee----eC--CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 456899999999999999999999998754 2222 1 00 1233344444444432111221111
Q ss_pred -H----HHHHHHHHccCCCeEEEeCCCC------------CHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccC
Q 028031 86 -I----KLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQ 146 (215)
Q Consensus 86 -~----~~~~~~~~~~~~~~~iidg~~~------------~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~ 146 (215)
. +.+...+.. +..||.|.|.. ..+++..+... . +.||++|||++|++++.+|+ +|
T Consensus 92 R~~~~~~~I~paL~~--g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~r-- 165 (223)
T 3ld9_A 92 RREHFVKIIKPSLMQ--KKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CK-- 165 (223)
T ss_dssp HHHHHHHTHHHHHHT--TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC-------------
T ss_pred HHHHHHHHHHHHHhc--CCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-cc--
Confidence 1 123333332 78999997542 13344444332 3 78999999999999999998 55
Q ss_pred CCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028031 147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
++.+....++.+++...+.. +...+ +..+++||++.+++++ ++|.+.+.....
T Consensus 166 dr~E~~~~e~~~rv~~~y~~---la~~~--~~~~~vIDa~~sieeV-~~I~~~l~~~lg 218 (223)
T 3ld9_A 166 NGYEFADMEFYYRVRDGFYD---IAKKN--PHRCHVITDKSETYDI-DDINFVHLEVIK 218 (223)
T ss_dssp ------CHHHHHHHHHHHHH---HHHHC--TTTEEEEESSCSSSCC-CHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHH---HHHHC--CCCEEEEcCCCCHHHH-HHHHHHHHHHHh
Confidence 44332223444444432221 11112 2368999999999999 999888765543
No 54
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.72 E-value=3.5e-16 Score=113.13 Aligned_cols=166 Identities=14% Similarity=0.089 Sum_probs=109.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-----CCCCHHHH----------
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEVT---------- 85 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---------- 85 (215)
...|.|+|.+||||||+++.|++ +|+.++++|.+.++.+..+......+.+.+... ..+....+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~ 87 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA 87 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence 45799999999999999999988 999999999998888766655444444433221 11221111
Q ss_pred ------------HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028031 86 ------------IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (215)
Q Consensus 86 ------------~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~ 153 (215)
...+...+...+...+++|. |...+. ..+.. .+|.+|++++|+++..+|+.+| ...+.
T Consensus 88 ~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~-~~~~~----~~D~vi~V~ap~e~r~~Rl~~R----dg~s~ 157 (210)
T 4i1u_A 88 RRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVES-RNWKA----RCDRVLVVDCPVDTQIARVMQR----NGFTR 157 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTC-HHHHH----HCSEEEEEECCHHHHHHHHHHH----HCCCH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-eccccc-CCccc----cCCeEEEEECCHHHHHHHHHhc----CCCCH
Confidence 12222333333355788886 322331 12222 2789999999999999999988 24567
Q ss_pred HHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhCCC
Q 028031 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~~~ 203 (215)
+.+.+++.... +..... .... ++|+++ ++++++.++|..++...
T Consensus 158 eea~~ri~~Q~----~~eek~-~~AD-~VIdN~~gsle~l~~qV~~l~~~~ 202 (210)
T 4i1u_A 158 EQVEAIIARQA----TREARL-AAAD-DVIVNDAATPDALAVQVDALHQRY 202 (210)
T ss_dssp HHHHHHHHHSC----CHHHHH-HTCS-EEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----ChHHHH-HhCC-EEEECCCCCHHHHHHHHHHHHHHH
Confidence 77777765432 222222 2222 667777 89999999998887654
No 55
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.72 E-value=6.8e-17 Score=117.86 Aligned_cols=176 Identities=13% Similarity=0.221 Sum_probs=106.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC-CCCHH-HH----------H
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-IVPSE-VT----------I 86 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~----------~ 86 (215)
.++++|+|.|++||||||+++.|++.++..+.. +++. ..+++.++.+.+++.... ..... .. .
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~----~~ep-~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~ 77 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKFP-ERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIV 77 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE----EESS-CTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccceE----EEec-CCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999852211 1110 124455556666655432 12211 11 1
Q ss_pred HHHHHHHHccCCCeEEEeCCCCC--------------HHHHHHHHHhcCCCCcEEEEE-ecCHHHHHHHHhhccCCCCCC
Q 028031 87 KLLQKAMEESGNDKFLIDGFPRN--------------EENRAAFEAVTKIEPEFVLFF-DCSEEEMERRILNRNQGREDD 151 (215)
Q Consensus 87 ~~~~~~~~~~~~~~~iidg~~~~--------------~~~~~~~~~~~~~~~~~~i~L-~~~~e~~~~R~~~r~~~~~~~ 151 (215)
+.+..++.. +..||.|.|..+ ..+...+.. ..+.||++||| ++|++++.+|+..+ ..+. +
T Consensus 78 ~~I~paL~~--g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~-~~~~PDlti~L~dv~pe~~~~R~~~~-~dr~-E 152 (216)
T 3tmk_A 78 DKIKKDLLE--GKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDV-GLLKPDLTLFLSTQDVDNNAEKSGFG-DERY-E 152 (216)
T ss_dssp HHHHHHHHT--TCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGT-TSBCCSEEEEEECSCCSCGGGCCSSS-CCTT-C
T ss_pred HHHHHHHHc--CCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhh-CCCCCCEEEEEeCCCHHHHHHHhccC-cccc-c
Confidence 223333332 889999975422 111111111 45789999999 99999999987644 1222 3
Q ss_pred cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEc-CCCCHHHHHHHHHHhhCCCccc
Q 028031 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKID-AAKPVAEVFDAVKAVFTPKDEK 206 (215)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id-~~~~~~e~~~~i~~~l~~~~~~ 206 (215)
. .+++++....+..+...... ..+..+++|| ++.+++++.++|.+.+......
T Consensus 153 ~-~~f~~rvr~~Y~~la~~~~~-~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~~ 206 (216)
T 3tmk_A 153 T-VKFQEKVKQTFMKLLDKEIR-KGDESITIVDVTNKGIQEVEALIWQIVEPVLST 206 (216)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHH-TTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHS
T ss_pred H-HHHHHHHHHHHHHHHHhccc-cCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3 35555554433221110000 1345789999 8999999999999888766554
No 56
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.72 E-value=9.8e-17 Score=116.66 Aligned_cols=164 Identities=18% Similarity=0.242 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC-----CCCHHH------------
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-----IVPSEV------------ 84 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------------ 84 (215)
++|+|+|++||||||+++.|++ +|+.+++.|++++.....+......+........ ......
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 9999999999887643222111111211111000 011100
Q ss_pred ------HHH----HHHHHHHccCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028031 85 ------TIK----LLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (215)
Q Consensus 85 ------~~~----~~~~~~~~~~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~ 153 (215)
... .+...+....+ ..+|+|+...... .+. ..++.+|||++|++++.+|+.+| +. ..
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~---~~~----~~~~~~i~l~~~~e~~~~Rl~~R--~~---~~ 148 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEK---GTY----KNYDKLIVVYAPYEVCKERAIKR--GM---SE 148 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTT---TCG----GGSSEEEEECCCHHHHHHHHHHT--CC---CH
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccC---Cch----hhCCEEEEEECCHHHHHHHHHHc--CC---CH
Confidence 001 11112222233 7889998532111 111 23678999999999999999987 42 34
Q ss_pred HHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028031 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (215)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~ 204 (215)
+.+.+++.... +... +..... ++||++.++++++++|...+....
T Consensus 149 ~~~~~~~~~~~----~~~~-~~~~ad-~vId~~~~~~~~~~~i~~~l~~~~ 193 (204)
T 2if2_A 149 EDFERRWKKQM----PIEE-KVKYAD-YVIDNSGSIEETYKQVKKVYEELT 193 (204)
T ss_dssp HHHHHHHTTSC----CHHH-HGGGCS-EECCCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCC----ChhH-HHhcCC-EEEECCCCHHHHHHHHHHHHHHHh
Confidence 45555544322 2222 222333 678888899999999999886543
No 57
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.72 E-value=8.2e-16 Score=112.00 Aligned_cols=163 Identities=18% Similarity=0.201 Sum_probs=98.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH----cCCC--cHHHHHHHHH-----------------cCCC
Q 028031 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSE--NGTMIQNMIK-----------------EGKI 79 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~----~~~~--~~~~~~~~~~-----------------~~~~ 79 (215)
+|+|+|++||||||+++.|++.+|+.+++.|++++.... .+.. ....+..... .+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 899999999999999999999999999999999877542 1221 1112222111 1111
Q ss_pred CC-----H------------HHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh
Q 028031 80 VP-----S------------EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142 (215)
Q Consensus 80 ~~-----~------------~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~ 142 (215)
.+ . ..+.+.+........ .++|+||.... . . ....++++|||++|++++.+|+.
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi~g~~~~-~------~-~~~~~d~~i~l~a~~e~~~~R~~ 154 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVAEGRDMG-T------A-VFPEAAHKFYLTASPEVRAWRRA 154 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEEEESSCC-C------C-CCTTCSEEEEEECCHHHHHHHHH
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEEEcccee-E------E-EecCCcEEEEEECCHHHHHHHHH
Confidence 11 0 011122222222223 67899986432 0 1 23457899999999999999998
Q ss_pred hccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCC-CHHHHHHHHHHhhC
Q 028031 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAK-PVAEVFDAVKAVFT 201 (215)
Q Consensus 143 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~e~~~~i~~~l~ 201 (215)
+| .. ...+.+.+++.......... +......++||++. ++++++++|...++
T Consensus 155 ~r--~~--~~~~~~~~~~~~R~~~~~~~---~~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 155 RE--RP--QAYEEVLRDLLRRDERDKAQ---SAPAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp HT--SS--SCHHHHHHHHHHHHHTC--C---CCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred hh--cc--cCHHHHHHHHHHHHHHHhhc---ccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 87 22 33455555554321111000 02223447888875 99999999988763
No 58
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.72 E-value=1.1e-15 Score=109.14 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=89.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEe-eH---HHHHHHHHHcCCCcHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL-SA---GDLLRAEIKSGSENGTMIQNMIKEGKIVP-SEVTIKLLQKAM 93 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 93 (215)
.++++|+|+|+|||||||+++.|++.+++.++ +. ++.++.....+... +.. ... .....+.+...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i~~~~~~g~~~-------~~~--~~~~~~~~~~~i~~~l 73 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGD-------PQE--HPMWIPLMLDALQYAS 73 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHHHHHHTSTTCCSC-------GGG--STTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHHHHhCccccch-------hhh--hHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999998887 43 22222221111000 000 000 122234444444
Q ss_pred HccCCCeEEEeCCCCCHHHHHH----HHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchh
Q 028031 94 EESGNDKFLIDGFPRNEENRAA----FEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP 169 (215)
Q Consensus 94 ~~~~~~~~iidg~~~~~~~~~~----~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (215)
.. .+..+|+|+.......... +.. .... ...|||++|++++.+|+.+|. .++ ...+.+...+..+ .+
T Consensus 74 ~~-~g~~vi~d~~~~~~~~~~~~~~~l~~-~~~~-~~~i~l~~~~e~~~~R~~~R~-~r~-~~~~~~~~~~~~~----~~ 144 (183)
T 2vli_A 74 RE-AAGPLIVPVSISDTARHRRLMSGLKD-RGLS-VHHFTLIAPLNVVLERLRRDG-QPQ-VNVGTVEDRLNEL----RG 144 (183)
T ss_dssp HH-CSSCEEEEECCCCHHHHHHHHHHHHH-TTCC-CEEEEEECCHHHHHHHHHTC------CCHHHHHHHHHHH----TS
T ss_pred Hh-CCCcEEEeeeccCHHHHHHHHHHHHh-cCCc-eEEEEEeCCHHHHHHHHHhcc-ccc-hhHHHHHHHHHhh----cc
Confidence 33 2677888976554432222 222 2222 256999999999999999871 122 2233333222222 22
Q ss_pred HHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhCCCcc
Q 028031 170 VVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 170 ~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~~~~~ 205 (215)
. . + . . +||++ .++++++++|.+.+.....
T Consensus 145 ~-~-~---~-~-~Id~~~~~~~~~~~~I~~~l~~~~~ 174 (183)
T 2vli_A 145 E-Q-F---Q-T-HIDTAGLGTQQVAEQIAAQVGLTLA 174 (183)
T ss_dssp G-G-G---C-S-EEECTTCCHHHHHHHHHHHHTCCCC
T ss_pred c-c-c---c-e-EeeCCCCCHHHHHHHHHHHHHHhcC
Confidence 2 1 1 2 3 77876 8999999999999987644
No 59
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.71 E-value=8.1e-16 Score=113.58 Aligned_cols=169 Identities=18% Similarity=0.249 Sum_probs=97.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH----cCCCcH--HHHHHHHHc-----------------
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSENG--TMIQNMIKE----------------- 76 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~----~~~~~~--~~~~~~~~~----------------- 76 (215)
++++|+|+|++||||||+++.|++.+|+.+++.|++++.... .+.... .........
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 357899999999999999999999999999999999987542 333221 122222110
Q ss_pred CCCCCHH-----------------HHHHHHHHHHHc-cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHH
Q 028031 77 GKIVPSE-----------------VTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138 (215)
Q Consensus 77 ~~~~~~~-----------------~~~~~~~~~~~~-~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~ 138 (215)
+..+++. .....+...... ..+.++++||..... . ....++++|||+++++++.
T Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~-------~-~~~~~d~~i~l~~~~e~~~ 155 (227)
T 1cke_A 84 GEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT-------V-VFPDAPVKIFLDASSEERA 155 (227)
T ss_dssp TEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC-------C-CCTTCSEEEEEECCHHHHH
T ss_pred CeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc-------e-EecCCCEEEEEeCCHHHHH
Confidence 1111111 111222222111 126789999963211 1 3346889999999999999
Q ss_pred HHHhhc--cCCCCCCcHHHHHHHHH-----HHhhcchhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhC
Q 028031 139 RRILNR--NQGREDDNVETIRKRFK-----VFLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFT 201 (215)
Q Consensus 139 ~R~~~r--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~ 201 (215)
+|+..+ .+++. ...+...+++. .+.....++ ......+++|++ .++++++++|.+.+.
T Consensus 156 ~R~~~~l~~rg~~-~~~~~~~~~i~~R~~~~~~~~~~pl----~~~~~~~~Id~~~~~~~ev~~~I~~~l~ 221 (227)
T 1cke_A 156 HRRMLQLQVKGFS-VNFERLLAEIKERDDRDRNRAVAPL----VPAADALVLDSTTLSIEQVIEKALQYAR 221 (227)
T ss_dssp HHHHHHHHHHTCC-CCHHHHHHHHC-------------C----CCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcc-CCHHHHHHHHHHHHHhhhhhcccCc----cCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 995432 12432 12333333332 122111222 111224788887 799999999998875
No 60
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.71 E-value=2.2e-16 Score=114.71 Aligned_cols=167 Identities=16% Similarity=0.173 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHH----HHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG----DLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
++|+|+|++||||||+++.|++.++..++... .+++..... .... .... . .......++.......
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~----~~~~-~~~~--~---~~~~~~r~~~~~~~~~ 70 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKD----LKKT-VFKM--Q---IYMLTARSKQLKQAKN 70 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTC----HHHH-HHHH--H---HHHHHHHHHHHC----
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhC----cccc-chhH--H---HHHHHHHHHHHHHhhc
Confidence 47999999999999999999999998766421 111111000 0000 0000 0 0000111111100111
Q ss_pred CCeEEEeCCCCCHHHH------------------HHHHH-h--c-------CCCCcEEEEEecCHHHHHHHHhhccCCCC
Q 028031 98 NDKFLIDGFPRNEENR------------------AAFEA-V--T-------KIEPEFVLFFDCSEEEMERRILNRNQGRE 149 (215)
Q Consensus 98 ~~~~iidg~~~~~~~~------------------~~~~~-~--~-------~~~~~~~i~L~~~~e~~~~R~~~r~~~~~ 149 (215)
...+|+|+++..-... ..+.. . . ...++.+|||++|++++.+|+.+| +++
T Consensus 71 ~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R--~r~ 148 (205)
T 2jaq_A 71 LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKR--GRS 148 (205)
T ss_dssp --CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHH--TCH
T ss_pred cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHc--CCh
Confidence 2249999876531110 01111 0 1 257899999999999999999887 443
Q ss_pred CCcH--HHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 150 DDNV--ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 150 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
.+.. ....+++...+.. ....|......+++|++.++++++++|...+...
T Consensus 149 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~ 201 (205)
T 2jaq_A 149 EELLIGEEYWETLNKNYEE---FYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSI 201 (205)
T ss_dssp HHHHSCHHHHHHHHHHHHH---HHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred hhhcCcHHHHHHHHHHHHH---HHHHccccCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 2211 1333444433321 2333432345788999889999999999888643
No 61
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.69 E-value=9.1e-16 Score=111.34 Aligned_cols=167 Identities=19% Similarity=0.211 Sum_probs=99.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHc---CCCCCHHHH---------
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE---GKIVPSEVT--------- 85 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------- 85 (215)
+.++++|+|+|++||||||+++.|++. |+.+++.|++++... .+.. ..+...+.. ...+....+
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~ 80 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPE 80 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHH
Confidence 456789999999999999999999998 999999999887764 2111 111111100 001111111
Q ss_pred -----H----HHH-HHHHH---ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028031 86 -----I----KLL-QKAME---ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (215)
Q Consensus 86 -----~----~~~-~~~~~---~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~ 152 (215)
. ..+ ...+. ..++..+|+|+... .+. .+ ...++.+|||++|++++.+|+.+| + ...
T Consensus 81 ~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~~l-~~~--~~----~~~~d~~i~l~~~~e~~~~R~~~R--~--~~~ 149 (203)
T 1uf9_A 81 RLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLL-FEK--GW----EGRLHGTLLVAAPLEERVRRVMAR--S--GLS 149 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECTTT-TTT--TC----GGGSSEEEEECCCHHHHHHHHHTT--T--CCT
T ss_pred HHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEecce-ecc--Cc----hhhCCEEEEEECCHHHHHHHHHHc--C--CCC
Confidence 0 111 01111 22267889997321 111 11 123689999999999999999877 2 222
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028031 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
.+.+..++... .+...+... .. +++|++.++++++++|...+.....
T Consensus 150 ~~~~~~~i~~~----~~~~~~~~~-ad-~vId~~~~~~~~~~~i~~~~~~~~~ 196 (203)
T 1uf9_A 150 REEVLARERAQ----MPEEEKRKR-AT-WVLENTGSLEDLERALKAVLAELTG 196 (203)
T ss_dssp THHHHHHHTTS----CCHHHHHHH-CS-EEECCSSHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHC----CChhHHHHh-CC-EEEECCCCHHHHHHHHHHHHHHHHh
Confidence 34455554431 112222222 23 5788877999999999998875543
No 62
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.69 E-value=3.1e-16 Score=111.31 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (215)
+.|+|+|+|||||||+++.|++.+++.+++.|++++... +....+.+. ..+..........++.. +.. ...+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~--g~~~~~~~~---~~g~~~~~~~~~~~~~~-l~~--~~~~ 76 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF--NQKVSEIFE---QKRENFFREQEQKMADF-FSS--CEKA 76 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH--TSCHHHHHH---HHCHHHHHHHHHHHHHH-HTT--CCSE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc--CCCHHHHHH---HcCHHHHHHHHHHHHHH-HHc--cCCE
Confidence 369999999999999999999999999999998877542 222222111 11111111111222332 222 3345
Q ss_pred EEe-CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHhhcchhHHHHHHhcC
Q 028031 102 LID-GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-QGREDDN-VETIRKRFKVFLESSLPVVQYYEAKG 178 (215)
Q Consensus 102 iid-g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (215)
+++ |...... .. +.. .+.+|||++|++++.+|+.+|. ..++... .+.+.+.+... ..+|....
T Consensus 77 vi~~g~~~~~~-~~-l~~-----~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r-------~~~y~~~~ 142 (175)
T 1via_A 77 CIATGGGFVNV-SN-LEK-----AGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNER-------LSKYEQKA 142 (175)
T ss_dssp EEECCTTGGGS-TT-GGG-----GCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHH-------HHHHHHHC
T ss_pred EEECCCCEehh-hH-Hhc-----CCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHH-------HHHHHhcC
Confidence 555 5332211 11 222 3579999999999999997762 2333332 33333322211 12243322
Q ss_pred cEEEEcCC-CCHHHHHHHHHHhhCC
Q 028031 179 KVRKIDAA-KPVAEVFDAVKAVFTP 202 (215)
Q Consensus 179 ~~~~id~~-~~~~e~~~~i~~~l~~ 202 (215)
.++||++ .+++++++.|...+..
T Consensus 143 -~~~Idt~~~~~eev~~~I~~~l~~ 166 (175)
T 1via_A 143 -NFILNIENKNIDELLSEIKKVIKE 166 (175)
T ss_dssp -SEEEECTTCCHHHHHHHHHHHHC-
T ss_pred -CEEEECCCCCHHHHHHHHHHHHHh
Confidence 4777776 7999999999998863
No 63
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.69 E-value=4.8e-16 Score=119.64 Aligned_cols=141 Identities=19% Similarity=0.254 Sum_probs=90.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-cCC
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGN 98 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 98 (215)
|.+|+|+|+|||||||+++.|++++ ++.+++.| .++..+..... +.. ..+...............+...+.. ..+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 5789999999999999999999985 89999997 55555433111 000 0000000000011223344444421 237
Q ss_pred CeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhc
Q 028031 99 DKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES 166 (215)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~ 166 (215)
..+|+|+++.....+..+..+ ....+..+|||++|.+++.+|+.+| +......+.+.+++..|...
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~e~i~~~~~~~~~~ 146 (301)
T 1ltq_A 79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMREY 146 (301)
T ss_dssp CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHC--GGGCCCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhc--cCCCCCHHHHHHHHHHHhcc
Confidence 899999988776666555532 2233457999999999999999988 43445567777777776543
No 64
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.69 E-value=2.6e-16 Score=110.97 Aligned_cols=155 Identities=15% Similarity=0.188 Sum_probs=87.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCe-
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK- 100 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 100 (215)
..|+|+|+|||||||+++.|++++|+.+++.|++.+... +....+.+. ..+...........+..... .+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~--g~~~~~~~~---~~g~~~~~~~~~~~l~~~~~--~~~~~ 80 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV--GLSVREIFE---ELGEDNFRMFEKNLIDELKT--LKTPH 80 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHH---HTCHHHHHHHHHHHHHHHHT--CSSCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh--CCCHHHHHH---HhCHHHHHHHHHHHHHHHHh--cCCCE
Confidence 479999999999999999999999999999999887653 222222111 11211111122223333221 1333
Q ss_pred EEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHhhcchhHHHHHHh
Q 028031 101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-QGREDDN-VETIRKRFKVFLESSLPVVQYYEA 176 (215)
Q Consensus 101 ~iidg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 176 (215)
++..| ++.. .. + ..++.+|||++|++++.+|+.+|. .+++... .+.+.+.+.. . ...|..
T Consensus 81 Vi~~g~g~~~~-~~---l-----~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~----r---~~~~~~ 144 (168)
T 1zuh_A 81 VISTGGGIVMH-EN---L-----KGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEK----R---QALYEK 144 (168)
T ss_dssp EEECCGGGGGC-GG---G-----TTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHH----H---HHHHHH
T ss_pred EEECCCCEech-hH---H-----hcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHH----H---HHHHHH
Confidence 33323 2222 11 1 236889999999999999998761 1222221 2333333222 1 122333
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHhh
Q 028031 177 KGKVRKIDAAKPVAEVFDAVKAVF 200 (215)
Q Consensus 177 ~~~~~~id~~~~~~e~~~~i~~~l 200 (215)
.. .+++|++.++++++++|...+
T Consensus 145 ~a-~~~Id~~~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 145 NA-SFIIDARGGLNNSLKQVLQFI 167 (168)
T ss_dssp TC-SEEEEGGGCHHHHHHHHHHC-
T ss_pred HC-CEEEECCCCHHHHHHHHHHHh
Confidence 23 356677669999999998765
No 65
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.69 E-value=2.5e-15 Score=107.55 Aligned_cols=114 Identities=20% Similarity=0.350 Sum_probs=73.0
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHH-hCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCC---CHHHHHHHHH
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH-FGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV---PSEVTIKLLQ 90 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 90 (215)
++++.+++.|+|+|+|||||||+++.|++. +|+.+++.|++.+.. ......++.+ .. ... ........+.
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~~~----~~-~~~~r~~~~~~~~~l~ 77 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDTEL----DT-HIIEEKDEDRLLDFME 77 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC----------C-CCCCHHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHHHh----hh-cccCCCCHHHHHHHHH
Confidence 455667889999999999999999999999 799999999988874 1111121111 11 122 2222334444
Q ss_pred HHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028031 91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 91 ~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
..+.. +.++++|..... .+.. ..++.+|||++|.+++.+|+.+|
T Consensus 78 ~~~~~--~g~~vi~~~~~~-----~~~~---~~~~~vi~l~~~~e~~~~Rl~~R 121 (184)
T 1y63_A 78 PIMVS--RGNHVVDYHSSE-----LFPE---RWFHMVVVLHTSTEVLFERLTKR 121 (184)
T ss_dssp HHHTS--SSEEEEECSCCT-----TSCG---GGCSEEEEEECCHHHHHHHHHHT
T ss_pred HHHhc--cCCEEEeCchHh-----hhhh---ccCCEEEEEECCHHHHHHHHHhC
Confidence 44322 346778864321 1111 12578999999999999999988
No 66
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.68 E-value=2.4e-17 Score=123.84 Aligned_cols=178 Identities=20% Similarity=0.253 Sum_probs=99.6
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCe----------EeeHHHHHHHHHHcCCCcHHHHHHHHHcCC-------
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT----------HLSAGDLLRAEIKSGSENGTMIQNMIKEGK------- 78 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 78 (215)
....++++|+|+|++||||||+|+.|++.+|+. +++.|++++.. ...... ....+.
T Consensus 17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~------~~~~~~-~~~~g~~~f~~~~ 89 (252)
T 1uj2_A 17 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL------TSEQKA-KALKGQFNFDHPD 89 (252)
T ss_dssp ----CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC------CHHHHH-HHHTTCSCTTSGG
T ss_pred ccCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc------Chhhhh-hhccCCCCCCCcc
Confidence 344578899999999999999999999999987 79999887521 000011 011111
Q ss_pred CCCHHHHHHHHHHHHH----------------------ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHH
Q 028031 79 IVPSEVTIKLLQKAME----------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136 (215)
Q Consensus 79 ~~~~~~~~~~~~~~~~----------------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~ 136 (215)
......+.+.+..... ......+|+||.+...+ ..+.. .++.+|||++++++
T Consensus 90 ~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~--~~~~~----~~d~vi~l~~~~e~ 163 (252)
T 1uj2_A 90 AFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS--QEVRD----LFQMKLFVDTDADT 163 (252)
T ss_dssp GBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS--HHHHH----HCSEEEEEECCHHH
T ss_pred hhhHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC--HHHHH----hcCeeEEEeCCHHH
Confidence 1112222333433321 11356899999653211 12222 25789999999999
Q ss_pred HHHHHhhcc-CCCCCCcHHHHHHHHHHHhh-cchhHHHHHHhcCcEEE---EcCCCCHHHHHHHHHHhhCCCcccc
Q 028031 137 MERRILNRN-QGREDDNVETIRKRFKVFLE-SSLPVVQYYEAKGKVRK---IDAAKPVAEVFDAVKAVFTPKDEKV 207 (215)
Q Consensus 137 ~~~R~~~r~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---id~~~~~~e~~~~i~~~l~~~~~~~ 207 (215)
+.+|+..|. ..+ ....+.+.+++..... ........+.....+++ +|++.++++++++|...+.....+.
T Consensus 164 ~~~R~~~R~~~~r-g~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~~~~~~ 238 (252)
T 1uj2_A 164 RLSRRVLRDISER-GRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGGPSKR 238 (252)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhhh-CCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHccchhhh
Confidence 999998771 001 1345555555443211 00000001122233333 3777899999999999998765543
No 67
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.68 E-value=1.3e-15 Score=112.18 Aligned_cols=173 Identities=18% Similarity=0.270 Sum_probs=98.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH----HcCCCc--HHHHHHHHHcCCC-------------
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSEN--GTMIQNMIKEGKI------------- 79 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~------------- 79 (215)
.++++|+|.||+||||||+++.|++.+++.+++.|.+++... ..+... .+.+.........
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l 86 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFL 86 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEE
Confidence 467899999999999999999999999999999999988753 223222 1223333221100
Q ss_pred ----CC-----HHH------------H---HHHHHHHHHccCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH
Q 028031 80 ----VP-----SEV------------T---IKLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (215)
Q Consensus 80 ----~~-----~~~------------~---~~~~~~~~~~~~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~ 134 (215)
+. .+. + ....++.+.. . .++|+||...... ..+..++.|||++|.
T Consensus 87 ~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~--~~~~~V~~GRd~gt~--------V~pda~lkifl~A~~ 156 (233)
T 3r20_A 87 AGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLAT--EGGRVVVEGRDIGTV--------VLPDADVKIFLTASA 156 (233)
T ss_dssp TTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHT--SSSCEEEEESSCCCC--------CCTTCSEEEEEECCH
T ss_pred CCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHH--hcCcEEEecccceeE--------EcCCCCEEEEEECCH
Confidence 00 000 0 1111222222 3 6788888421100 223457899999999
Q ss_pred HHHHHHHhhc-cCCCCCCcHHHHHHHHHHHhh-----cchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhCCCcc
Q 028031 135 EEMERRILNR-NQGREDDNVETIRKRFKVFLE-----SSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 135 e~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~~~~~ 205 (215)
+++.+|..+. ...+.....+.+.+.+..... .+.++ ......++||+ ..+++++++.|..+++....
T Consensus 157 e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl----~~~~dal~IDTs~l~iee~v~~I~~~i~~~~~ 230 (233)
T 3r20_A 157 EERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPL----RAADDALVVDTSDMDQAQVIAHLLDLVTAQAG 230 (233)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCC----SCCTTSEEEECTTSCHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccccc----ccccCcEEEECCCCCHHHHHHHHHHHHHHhhc
Confidence 9999988753 111223344555544433221 11121 11123366666 77999999999999976543
No 68
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.68 E-value=2.6e-15 Score=108.80 Aligned_cols=169 Identities=14% Similarity=0.178 Sum_probs=93.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcH-HHHHHHHHcCC-CC------------CH----
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG-TMIQNMIKEGK-IV------------PS---- 82 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~------------~~---- 82 (215)
.++|.|.|++||||||+++.||+++|+.+++ +++++..... .... +.+...-.... +. ..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~-~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKD-GRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA 83 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHh-cCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence 4689999999999999999999999999999 7887664322 1111 11111111000 00 00
Q ss_pred HHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028031 83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV 162 (215)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~ 162 (215)
....+.+++ +......++|++|.. - .... ......+.|||++|++++.+|+.++. + ...+...+.+..
T Consensus 84 ~~~~~~i~~-la~~~~~~~Vi~Gr~--g---~~vl--~~~~~~~~V~L~A~~e~r~~R~~~~~-~---~~~~~~~~~i~~ 151 (201)
T 3fdi_A 84 IRQFNFIRK-KANEEKESFVIVGRC--A---EEIL--SDNPNMISAFILGDKDTKTKRVMERE-G---VDEKTALNMMKK 151 (201)
T ss_dssp HHHHHHHHH-HHHTSCCCEEEESTT--H---HHHT--TTCTTEEEEEEEECHHHHHHHHHHHH-T---CCHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhhcCCCEEEEECC--c---chhc--CCCCCeEEEEEECCHHHHHHHHHHHh-C---CCHHHHHHHHHH
Confidence 112222222 220014567888742 1 1111 11123579999999999999998761 2 223444444443
Q ss_pred HhhcchhHHHHH------HhcCcEEEEcC-CCCHHHHHHHHHHhhCCC
Q 028031 163 FLESSLPVVQYY------EAKGKVRKIDA-AKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 163 ~~~~~~~~~~~~------~~~~~~~~id~-~~~~~e~~~~i~~~l~~~ 203 (215)
......+.+..| ......++||+ ..+++++++.|...++..
T Consensus 152 ~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~~ 199 (201)
T 3fdi_A 152 MDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDSR 199 (201)
T ss_dssp HHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHHh
Confidence 333222322222 11112355665 679999999999988643
No 69
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.67 E-value=2.5e-15 Score=112.72 Aligned_cols=176 Identities=16% Similarity=0.177 Sum_probs=97.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH----HcCCCcH--HHHHHHHHcC---------------
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENG--TMIQNMIKEG--------------- 77 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~----~~~~~~~--~~~~~~~~~~--------------- 77 (215)
.++.+|+|.|++||||||+++.|++++|+.+++.|.+++... ..+.... .........-
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 356799999999999999999999999999999999997653 3322210 1111111100
Q ss_pred --CCCC-----------------HHHHHHHHHHHHHcc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028031 78 --KIVP-----------------SEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (215)
Q Consensus 78 --~~~~-----------------~~~~~~~~~~~~~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~ 137 (215)
..+. ...+.+.+....... .+.++|+||...... ..+..++.|||++|++++
T Consensus 105 ~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~--------v~~~~~~~ifl~A~~e~r 176 (252)
T 4e22_A 105 EGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTI--------VFPDAPVKIFLDASSQER 176 (252)
T ss_dssp TTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCC--------CSTTCSEEEEEECCHHHH
T ss_pred CCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceecee--------ecCCCCEEEEEECCHHHH
Confidence 0000 011112222221222 256788887421100 123467899999999999
Q ss_pred HHHHhhc-cCCCCCCcHHHHHHHHHHHhh--cchhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhCCC
Q 028031 138 ERRILNR-NQGREDDNVETIRKRFKVFLE--SSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 138 ~~R~~~r-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~~~ 203 (215)
.+|+.+. ...+.....+.+.+++..... ..+. ...+......++||++ .+++++++.|..++...
T Consensus 177 ~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~-~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~ 245 (252)
T 4e22_A 177 AHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRS-VAPLVPAADALVLDSTSMSIEQVIEQALAYAQRI 245 (252)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhcc-ccchhccCCeEEEECcCCCHHHHHHHHHHHHHHH
Confidence 9987652 001123344555444422111 1010 0111112234677774 49999999999888643
No 70
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.67 E-value=1.2e-15 Score=108.07 Aligned_cols=161 Identities=15% Similarity=0.247 Sum_probs=87.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (215)
++.+|+|+|+|||||||+++.|++.+++.+++.|++.+... +......+... +..........++.. +.. ..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~~---g~~~~~~~~~~~l~~-l~~--~~ 74 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDLE---GEEGFRDREEKVINE-LTE--KQ 74 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHHH---HHHHHHHHHHHHHHH-HHT--SS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHHH---hHHHHHHHHHHHHHH-HHh--CC
Confidence 45689999999999999999999999999999988776542 22222211110 000000001122222 222 23
Q ss_pred eEEEe---CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCC--CCCCc-HHHHHHHHHHHhhcchhHHH
Q 028031 100 KFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQG--REDDN-VETIRKRFKVFLESSLPVVQ 172 (215)
Q Consensus 100 ~~iid---g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~ 172 (215)
.+++. +.+........+.. .++++||+++++++.+|+.+| .+. ...+. .+.+...+... .+
T Consensus 75 ~~v~~~~~~~~~~~~~~~~l~~-----~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r----~~--- 142 (173)
T 1kag_A 75 GIVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANER----NP--- 142 (173)
T ss_dssp SEEEECCTTGGGSHHHHHHHHH-----HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHH----HH---
T ss_pred CeEEECCCeEEecHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHH----HH---
Confidence 45553 22222223333333 467999999999999999876 111 11122 34333332221 12
Q ss_pred HHHhcCcEEEEcCC-CCHHHHHHHHHHhhC
Q 028031 173 YYEAKGKVRKIDAA-KPVAEVFDAVKAVFT 201 (215)
Q Consensus 173 ~~~~~~~~~~id~~-~~~~e~~~~i~~~l~ 201 (215)
.|.... .++||++ .++++++++|...+.
T Consensus 143 ~~~~~a-~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 143 LYEEIA-DVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp HHHHHC-SEEC-----CHHHHHHHHHHHHC
T ss_pred HHHhhC-CEEEECCCCCHHHHHHHHHHHHH
Confidence 233333 4677775 799999999998875
No 71
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.66 E-value=4.8e-16 Score=113.30 Aligned_cols=170 Identities=18% Similarity=0.169 Sum_probs=98.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-- 95 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (215)
.++.+|+|+|++||||||+++.|++.+ ++.+++.|+++... .........+.. ......+......+.+...+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~~l~~~~ 96 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPE-SEIETDKNGFLQ-YDVLEALNMEKMMSAISCWMESAR 96 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCG-GGSCBCTTSCBC-CSSGGGBCHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCH-hHhhccccCCCh-hHHHHHhHHHHHHHHHHHHHhCCC
Confidence 456789999999999999999999988 89999998876422 100000000000 0000001112222222222211
Q ss_pred -----------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc-HHHHHHH-HHH
Q 028031 96 -----------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN-VETIRKR-FKV 162 (215)
Q Consensus 96 -----------~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~-~~~~~~~-~~~ 162 (215)
.....+|+||++.... .. ....+|.++|++++++++.+|+..| +...+. ...+..+ ...
T Consensus 97 ~~~~~~~~~~~~~~~~vi~eg~~~~~~-----~~-~~~~~d~~i~l~~~~~~~~~R~~~R--~~~~e~~~~~~~~~~~~~ 168 (207)
T 2qt1_A 97 HSVVSTDQESAEEIPILIIEGFLLFNY-----KP-LDTIWNRSYFLTIPYEECKRRRSTR--VYQPPDSPGYFDGHVWPM 168 (207)
T ss_dssp TSSCCC-----CCCCEEEEECTTCTTC-----GG-GTTTCSEEEEEECCHHHHHHHHHHS--CCSSCCCTTHHHHTHHHH
T ss_pred CCCcCCCeeecCCCCEEEEeehHHcCc-----HH-HHHhcCeeEEEECCHHHHHHHHHHc--CCCccchHHHHHHHHhHH
Confidence 1256899999653211 11 2345789999999999999999877 322221 1122211 111
Q ss_pred HhhcchhHHHHHHhc-CcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 163 FLESSLPVVQYYEAK-GKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 163 ~~~~~~~~~~~~~~~-~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
|. ...+.+... ..++.||++.++++++++|.+.+..
T Consensus 169 ~~----~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 169 YL----KYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp HH----HHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred HH----HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 21 122333333 4677899999999999999998864
No 72
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.66 E-value=4.1e-15 Score=110.94 Aligned_cols=169 Identities=17% Similarity=0.199 Sum_probs=98.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCe
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (215)
..+|+|+|++||||||+++.|++.+|+.+++.|++++... .+......+.. .+...........+....... ...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~-~g~~i~~i~~~---~ge~~fr~~e~~~l~~l~~~~-~~~ 122 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM-KGTSVAEIFEH---FGESVFREKETEALKKLSLMY-HQV 122 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS-TTSCHHHHHHH---HCHHHHHHHHHHHHHHHHHHC-SSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh-cCccHHHHHHH---hCcHHHHHHHHHHHHHHHhhc-CCc
Confidence 6789999999999999999999999999999999887653 22222222211 122222222233444433321 244
Q ss_pred EEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCC-------CCcHHHHHHHHHHHhhcchhH
Q 028031 101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGRE-------DDNVETIRKRFKVFLESSLPV 170 (215)
Q Consensus 101 ~iidg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 170 (215)
+|..| .+........+ . .+.+|||++|.+++.+|+.++ ...++ .+..+...+++........++
T Consensus 123 Via~GgG~v~~~~~~~~l-~-----~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~l 196 (250)
T 3nwj_A 123 VVSTGGGAVIRPINWKYM-H-----KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEA 196 (250)
T ss_dssp EEECCGGGGGSHHHHHHH-T-----TSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCeecCHHHHHHH-h-----CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHH
Confidence 55554 33222222222 1 268999999999999999863 11121 111122334455444444444
Q ss_pred HHHHHhcCcEEE-----------EcC-CCCHHHHHHHHHHhhCCCc
Q 028031 171 VQYYEAKGKVRK-----------IDA-AKPVAEVFDAVKAVFTPKD 204 (215)
Q Consensus 171 ~~~~~~~~~~~~-----------id~-~~~~~e~~~~i~~~l~~~~ 204 (215)
|.... +++ +|+ ..+++++++.|...+....
T Consensus 197 ---Y~~ad-~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~ 238 (250)
T 3nwj_A 197 ---YTKAS-ARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYL 238 (250)
T ss_dssp ---HTTSS-EEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred ---HhhCC-EEEEecccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 54433 333 254 6799999999998886543
No 73
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.65 E-value=1.6e-16 Score=113.37 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=70.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCC
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (215)
.++.+|+|+|+|||||||+++.|++.+++.+++.|++++... .....+... .........+...+...+.. +
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--g 80 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQ-LYDGYDEEY-----DCPILDEDRVVDELDNQMRE--G 80 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT-CEEEEETTT-----TEEEECHHHHHHHHHHHHHH--C
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcc-hhhhhhhhh-----cCccCChHHHHHHHHHHHhc--C
Confidence 456789999999999999999999999999999999877651 100010000 00111223334444444443 3
Q ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028031 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
++++|....... ....++.+|||++|++++.+|+.+|
T Consensus 81 -~~vv~~~~~~~~--------~~~~~~~vi~L~~~~e~l~~R~~~r 117 (180)
T 3iij_A 81 -GVIVDYHGCDFF--------PERWFHIVFVLRTDTNVLYERLETR 117 (180)
T ss_dssp -CEEEECSCCTTS--------CGGGCSEEEEEECCHHHHHHHHHHT
T ss_pred -CEEEEechhhhc--------chhcCCEEEEEECCHHHHHHHHHHc
Confidence 455675331110 0012678999999999999999988
No 74
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.64 E-value=1.1e-14 Score=105.77 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=95.4
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHc---CC----CcHHHHHHHHHcCCCCCHH-----
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GS----ENGTMIQNMIKEGKIVPSE----- 83 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~----- 83 (215)
.+.++++|+|+|+|||||||+++.|++.++. ...+..+..|..... +. -..+.+......+.+....
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANN 87 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCC
Confidence 4677889999999999999999999998842 111111111100000 00 0001111111112111100
Q ss_pred ---HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCC-CcEEEEEe-cCHHHHHHHHhhccCCCCCCcHHHHHH
Q 028031 84 ---VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIE-PEFVLFFD-CSEEEMERRILNRNQGREDDNVETIRK 158 (215)
Q Consensus 84 ---~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~-~~~~i~L~-~~~e~~~~R~~~r~~~~~~~~~~~~~~ 158 (215)
.....+...+.. +..+|+|+.+ .....+.. .... ...+|||. +|.+++.+|+.+| +. +..+.+.+
T Consensus 88 ~~~~~~~~i~~~l~~--g~~vi~d~~~---~~~~~l~~-~~~~~~~~~i~l~~~s~e~l~~Rl~~R--~~--~~~~~i~~ 157 (204)
T 2qor_A 88 FYGTLKSEYDLAVGE--GKICLFEMNI---NGVKQLKE-SKHIQDGIYIFVKPPSIDILLGRLKNR--NT--EKPEEINK 157 (204)
T ss_dssp EEEEEHHHHHHHHHT--TCEEEEECCH---HHHHHHHH-CSSCSCCEEEEEECSCHHHHHHHHHTC--TT--SCHHHHHH
T ss_pred eecCCHHHHHHHHHc--CCeEEEEECH---HHHHHHHH-hcCCCCeEEEEEcCCCHHHHHHHHHHc--CC--CCHHHHHH
Confidence 001234444432 7899999643 33344443 3321 23789998 9999999999987 43 35577777
Q ss_pred HHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 159 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
|+........+. +......+++| + ++++++++|...+...
T Consensus 158 rl~~~~~~~~~~---~~~~~d~vi~n-~-~~e~~~~~i~~~i~~~ 197 (204)
T 2qor_A 158 RMQELTREMDEA---DKVGFNYFIVN-D-DLARTYAELREYLLGS 197 (204)
T ss_dssp HHHHHHHHHHHH---HHHTCSEEEEC-S-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---hhccCcEEEEC-c-CHHHHHHHHHHHHHHH
Confidence 777654322110 33333455444 4 8999999999888643
No 75
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.63 E-value=1.3e-14 Score=107.78 Aligned_cols=171 Identities=20% Similarity=0.271 Sum_probs=100.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH----cCCCc--HHHHHHHH------------------
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSEN--GTMIQNMI------------------ 74 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~----~~~~~--~~~~~~~~------------------ 74 (215)
.++.+|+|+|++||||||+++.|++.+|+.+++.|++++.... .+... ...+....
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~ 93 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVF 93 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEe
Confidence 4567899999999999999999999999999999999987532 33321 11121111
Q ss_pred HcCC----CCCHHHHH-------------HHHHHHHHc-cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHH
Q 028031 75 KEGK----IVPSEVTI-------------KLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136 (215)
Q Consensus 75 ~~~~----~~~~~~~~-------------~~~~~~~~~-~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~ 136 (215)
..|. .+..+.+. ..+...... ..+.++|+||...... ....++++|||++|+++
T Consensus 94 ~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~~--------~l~~~d~vi~L~a~~e~ 165 (236)
T 1q3t_A 94 VGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTV--------VLPQAELKIFLVASVDE 165 (236)
T ss_dssp ETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSSS--------SGGGCSEEEEEECCHHH
T ss_pred ECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchhh--------hccCCCEEEEEECCHHH
Confidence 1121 11111111 112111111 1256888998753210 11235789999999999
Q ss_pred HHHHH----hhccCCCCCCcHHHHHHHHHH--HhhcchhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhC
Q 028031 137 MERRI----LNRNQGREDDNVETIRKRFKV--FLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFT 201 (215)
Q Consensus 137 ~~~R~----~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~ 201 (215)
+.+|+ ..| +. ....+.+.+++.. +....+.+...+.. ...++||++ .++++++++|...+.
T Consensus 166 ~~~R~~~~~~~R--~~-~~~~e~~~~~i~~R~~~~~~~~~~p~~~~-~d~~vId~~~~s~eev~~~I~~~l~ 233 (236)
T 1q3t_A 166 RAERRYKENIAK--GI-ETDLETLKKEIAARDYKDSHRETSPLKQA-EDAVYLDTTGLNIQEVVEKIKAEAE 233 (236)
T ss_dssp HHHHHHHHHHHT--TC-CCCHHHHHHHHHHHHHHHTTCSSSCCSCC-TTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CC-CCCHHHHHHHHHHHhhhhhhccccccccc-CCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 99997 344 43 2344555555442 11111111111221 234778886 599999999998874
No 76
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.63 E-value=1.3e-14 Score=103.03 Aligned_cols=164 Identities=14% Similarity=0.116 Sum_probs=86.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe--eHHHHHHHHHHcCCC-cHHHHHHHHHcCCCC-CH---HHH---HHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSGSE-NGTMIQNMIKEGKIV-PS---EVT---IKLL 89 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~---~~~---~~~~ 89 (215)
++++|+|+|+|||||||+++.|+++++..++ +.|++.... ..... ..... .+...+... .. ... ...+
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAM-PLKMQSAEGGI-EFDADGGVSIGPEFRALEGAWAEGV 79 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHS-CGGGGTSTTSE-EECTTSCEEECHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhc-chhhccchhhc-cccCCCccccchhHHHHHHHHHHHH
Confidence 3578999999999999999999999986555 476654322 11100 00000 000000000 00 011 1122
Q ss_pred HHHHHccCCCeEEEeCCCC-CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcch
Q 028031 90 QKAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSL 168 (215)
Q Consensus 90 ~~~~~~~~~~~~iidg~~~-~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 168 (215)
..... .+..+|+|+... .......+.+.....+..+|||++|.+++.+|+.+| +...... .... +.
T Consensus 80 ~~~~~--~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r--~~~~~~~--~~~~---~~---- 146 (178)
T 1qhx_A 80 VAMAR--AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETAR--GDRVAGM--AAKQ---AY---- 146 (178)
T ss_dssp HHHHH--TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHT--SSSCTTH--HHHH---TT----
T ss_pred HHHHh--cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhh--CCcccch--hhhh---ch----
Confidence 22222 267899998543 222223333312223446899999999999999988 2111111 1111 11
Q ss_pred hHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhC
Q 028031 169 PVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFT 201 (215)
Q Consensus 169 ~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~ 201 (215)
.+.. +. ...+++|+ ..+++++++.|...+.
T Consensus 147 ~~~~-~~--~~d~~idt~~~~~~~~~~~I~~~l~ 177 (178)
T 1qhx_A 147 VVHE-GV--EYDVEVDTTHKESIECAWAIAAHVV 177 (178)
T ss_dssp GGGT-TC--CCSEEEETTSSCHHHHHHHHHTTCC
T ss_pred hhcc-CC--CCcEEEECCCCCHHHHHHHHHHHhc
Confidence 1111 11 12356666 4599999999988764
No 77
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.63 E-value=6.1e-14 Score=102.88 Aligned_cols=169 Identities=14% Similarity=0.197 Sum_probs=94.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC----------------------
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG---------------------- 77 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 77 (215)
+.++|.|.|++||||||+++.||+++|+.+++ +++++.......-..+.+...-...
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC------------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccccccc
Confidence 45799999999999999999999999999999 5766665444211111111111000
Q ss_pred --CCCCHHHH----HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCC-cEEEEEecCHHHHHHHHhhccCCCCC
Q 028031 78 --KIVPSEVT----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEP-EFVLFFDCSEEEMERRILNRNQGRED 150 (215)
Q Consensus 78 --~~~~~~~~----~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~-~~~i~L~~~~e~~~~R~~~r~~~~~~ 150 (215)
....++.. .+.+.+. .. ..++|++|... . ..+.. ....+ .+.|||.+|.+++.+|+.++ .++
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~l-a~--~~~~Vi~Grgg--g--~vl~~-~~~~~~~~~VfL~A~~e~r~~Ri~~~-~~~-- 160 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMREL-AE--SEPCIFVGRAA--G--YVLDQ-DEDIERLIRIFVYTDKVKKVQRVMEV-DCI-- 160 (223)
T ss_dssp ------HHHHHHHHHHHHHHH-HH--HSCEEEESTTH--H--HHHHH-CTTCCEEEEEEEECCHHHHHHHHHHH-HTC--
T ss_pred ccccccHHHHHHHHHHHHHHH-Hh--CCCEEEEeCCc--c--hhccc-ccCCCCeEEEEEECCHHHHHHHHHHh-cCC--
Confidence 00001111 1222222 22 34677776431 1 11110 01123 57999999999999999876 122
Q ss_pred CcHHHHHHHHHHHhhcchhHHHHHH------hcCcEEEEcC-CCCHHHHHHHHHHhhC
Q 028031 151 DNVETIRKRFKVFLESSLPVVQYYE------AKGKVRKIDA-AKPVAEVFDAVKAVFT 201 (215)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~id~-~~~~~e~~~~i~~~l~ 201 (215)
..+...+.+........+.+..|- .....++||+ ..+++++++.|...++
T Consensus 161 -~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~ 217 (223)
T 3hdt_A 161 -DEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIR 217 (223)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHH
Confidence 234455555444443334433221 1113456666 5699999999998885
No 78
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.62 E-value=6e-15 Score=105.94 Aligned_cols=151 Identities=13% Similarity=0.167 Sum_probs=90.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC----CCC-----------CHH-
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG----KIV-----------PSE- 83 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----------~~~- 83 (215)
..++|+|+|++||||||+++.|++.+|+.+++.|++.++.... .. ..+...+... ..+ ..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~--~~-~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~ 87 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE--VK-EKLVELFGGSVLEDGKVNRKKLAGIVFESREN 87 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH--TH-HHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH--HH-HHHHHHhChhhcCCCCcCHHHHHHHHhCCHHH
Confidence 4678999999999999999999999999999999998887653 11 1111111000 000 000
Q ss_pred ------HHH----HHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028031 84 ------VTI----KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (215)
Q Consensus 84 ------~~~----~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~ 153 (215)
... ..+...+... +..+++|+. ...+. .+.. .+|.+||+++|+++..+|+...
T Consensus 88 ~~~l~~i~hP~i~~~~~~~~~~~-~~~vv~d~p-ll~e~--~~~~----~~d~vi~v~a~~e~r~~Rli~~--------- 150 (192)
T 2grj_A 88 LKKLELLVHPLMKKRVQEIINKT-SGLIVIEAA-LLKRM--GLDQ----LCDHVITVVASRETILKRNREA--------- 150 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-CEEEEEECT-TTTTT--TGGG----GCSEEEEEECCHHHHHHHCSSH---------
T ss_pred HHHHHhhhCHHHHHHHHHHHHHc-CCEEEEEEe-ceeec--ChHH----hCCEEEEEECCHHHHHHHHHHh---------
Confidence 111 1112222222 457888863 22222 1222 3678999999999999997211
Q ss_pred HHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
++..+... ..... -++|+++.+++++.++|.+.+...
T Consensus 151 -----q~~~~~~~-------~~~~A-D~vI~n~~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 151 -----DRRLKFQE-------DIVPQ-GIVVANNSTLEDLEKKVEEVMKLV 187 (192)
T ss_dssp -----HHHHTTCT-------TCCCC-SEEEECSSCHHHHHHHHHHHHHHH
T ss_pred -----cCCchhhh-------HHhcC-CEEEECCCCHHHHHHHHHHHHHHH
Confidence 11111110 11122 256777789999999998887544
No 79
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.61 E-value=2.7e-14 Score=102.23 Aligned_cols=164 Identities=16% Similarity=0.174 Sum_probs=89.3
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHH--
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK-- 87 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 87 (215)
.....++.+|+|+|++||||||+++.|++.++ +.+++.|. ++..+.....+...-. ......
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~r----------~~~~~~~~ 75 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW-ARTTVSEGAGFTREER----------LRHLKRIA 75 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHTTTTTTCCCCHHHH----------HHHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH-HHHHHhhccCCChhhH----------HHHHHHHH
Confidence 34445688999999999999999999999985 34566644 3432221111110000 000011
Q ss_pred HHHHHHHccCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH-HHh
Q 028031 88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK-VFL 164 (215)
Q Consensus 88 ~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~-~~~ 164 (215)
.+...+. ..+..+++|++.........+..+ ....|+.+|||++|++++.+|+..+ ...+.. ...
T Consensus 76 ~~~~~~~-~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~-----------~~~~~~~~~~ 143 (186)
T 2yvu_A 76 WIARLLA-RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKG-----------LYKKALKGEL 143 (186)
T ss_dssp HHHHHHH-TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHH-----------HHHHHHTTCC
T ss_pred HHHHHHH-hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhh-----------hhhHHhhcch
Confidence 1112222 236778889865443333333221 3336789999999999999997432 000000 000
Q ss_pred hcchhHHHHHHh-cCcEEEEcCC-CCHHHHHHHHHHhhC
Q 028031 165 ESSLPVVQYYEA-KGKVRKIDAA-KPVAEVFDAVKAVFT 201 (215)
Q Consensus 165 ~~~~~~~~~~~~-~~~~~~id~~-~~~~e~~~~i~~~l~ 201 (215)
.........|.. ....++||++ .+++++++.|...+.
T Consensus 144 ~~~~~~~~~y~~~~~~~~~Id~~~~~~~ev~~~I~~~l~ 182 (186)
T 2yvu_A 144 ENFTGITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVK 182 (186)
T ss_dssp SSCHHHHSCCCCCSSCSEEEETTTSCHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccCCCCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 000001111221 1234778885 799999999988774
No 80
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.60 E-value=1.8e-14 Score=105.72 Aligned_cols=168 Identities=16% Similarity=0.247 Sum_probs=97.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHH----HHcCCCcHHHHHHH-------H-----------HcC
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGTMIQNM-------I-----------KEG 77 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~-------~-----------~~~ 77 (215)
+|++|+|+|++||||||+++.|++.+|+.+++.|++++.. ...+. ...+.+. + ..|
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g 79 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDN 79 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCC
Confidence 3578999999999999999999999999999999998864 22322 1111111 0 111
Q ss_pred CCC----CHHHH-------------HHHHH---HHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028031 78 KIV----PSEVT-------------IKLLQ---KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (215)
Q Consensus 78 ~~~----~~~~~-------------~~~~~---~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~ 137 (215)
... ..... .+.+. ..+. .+.++|+||... .. . ....++++|||++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~--~~~~~vi~g~~~--~~-----~-~~~~~~~vi~l~a~~e~~ 149 (219)
T 2h92_A 80 EDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELA--AEKGIVMDGRDI--GT-----V-VLPDADLKVYMIASVEER 149 (219)
T ss_dssp EECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHH--TTCCEEEEESSC--CC-----C-CCTTCSEEEEEECCHHHH
T ss_pred ccchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhc--cCCcEEEEcCCc--cc-----e-ecCCCCEEEEEECCHHHH
Confidence 111 00010 01111 1121 255788898421 10 1 233567899999999999
Q ss_pred HHHHhhc--cCCCCCCcHHHHHHHHHHHh--hcchhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhC
Q 028031 138 ERRILNR--NQGREDDNVETIRKRFKVFL--ESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFT 201 (215)
Q Consensus 138 ~~R~~~r--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~ 201 (215)
.+|+.++ .++. ....+.+.+++..-. +..+.+..+|.. ...++||++ .++++++++|...+.
T Consensus 150 ~~R~~~~~~~r~~-~~~~e~~~~~~~~r~~~d~~r~~~~~~~~-~d~~~Id~~~~~~ee~~~~I~~~l~ 216 (219)
T 2h92_A 150 AERRYKDNQLRGI-ESNFEDLKRDIEARDQYDMNREISPLRKA-DDAVTLDTTGKSIEEVTDEILAMVS 216 (219)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHCSSSCSCCC-TTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-ccCHHHHHHHHHHHHHhhhhhhccccccC-CCeEEEECCCCCHHHHHHHHHHHHh
Confidence 9997532 1243 224566666654221 111111111222 334777776 599999999998875
No 81
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.59 E-value=1e-14 Score=110.08 Aligned_cols=78 Identities=14% Similarity=0.296 Sum_probs=51.9
Q ss_pred CCCcEEEEEecCHHHHHHHHhhccCCCCC---Cc---HHHHHHHHHHHhhc--chhHHHHHHhcCcEEEEcCCCCHHHHH
Q 028031 122 IEPEFVLFFDCSEEEMERRILNRNQGRED---DN---VETIRKRFKVFLES--SLPVVQYYEAKGKVRKIDAAKPVAEVF 193 (215)
Q Consensus 122 ~~~~~~i~L~~~~e~~~~R~~~r~~~~~~---~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~id~~~~~~e~~ 193 (215)
..||++|||++|++++.+|+.+| +++. .. .+.+.+++..|... .++.+..+.. ..+++||++.++++++
T Consensus 173 ~~pd~vi~L~~~~e~~~~Ri~~R--~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~ 249 (263)
T 1p5z_B 173 LELDGIIYLQATPETCLHRIYLR--GRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKY 249 (263)
T ss_dssp HCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHH
T ss_pred CCCCeEEEEECCHHHHHHHHHhc--CCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHH
Confidence 47999999999999999999887 4331 11 23333344444321 1222222233 4588999999999999
Q ss_pred HHHHHhhCC
Q 028031 194 DAVKAVFTP 202 (215)
Q Consensus 194 ~~i~~~l~~ 202 (215)
+.|...+..
T Consensus 250 ~~I~~~l~~ 258 (263)
T 1p5z_B 250 ESLVEKVKE 258 (263)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 82
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.58 E-value=1.3e-14 Score=110.70 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=73.7
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh--CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC----CCCCHHHHHHHH
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG----KIVPSEVTIKLL 89 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 89 (215)
.+..+|.+|+|+|+|||||||+++.|++.+ ++.+++.|. ++..... +......+.... ...........+
T Consensus 28 ~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~-~R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v 103 (287)
T 1gvn_B 28 KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT-FKQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAII 103 (287)
T ss_dssp CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH-HHTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH-hHHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHH
Confidence 345568999999999999999999999998 788888755 4422111 111111100000 000111223344
Q ss_pred HHHHHccCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHH----HHHHhhc
Q 028031 90 QKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEM----ERRILNR 144 (215)
Q Consensus 90 ~~~~~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~----~~R~~~r 144 (215)
...+.. +..+|+|+.+....+...+... ....+..++++.+|++++ .+|+..|
T Consensus 104 ~~~l~~--g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R 162 (287)
T 1gvn_B 104 SRLSDQ--GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM 162 (287)
T ss_dssp HHHHHH--TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence 444433 7889999987665544333321 222233478999999999 8888766
No 83
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.58 E-value=7e-14 Score=112.02 Aligned_cols=103 Identities=22% Similarity=0.286 Sum_probs=76.6
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (215)
+.+.++.+|+|+|+|||||||+++.|++.+++.+++.|++ + ........+...+..
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~-----------------------~~~~~~~~~~~~l~~ 308 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-G-----------------------SWQRCVSSCQAALRQ 308 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-C-----------------------SHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-H-----------------------HHHHHHHHHHHHHhc
Confidence 3455688999999999999999999999999999998774 0 011123344444443
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028031 96 SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 96 ~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
+..+|+|+.......+..+..+ ....+..+|||+++.+++.+|+..|
T Consensus 309 --g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R 357 (416)
T 3zvl_A 309 --GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR 357 (416)
T ss_dssp --TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred --CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhh
Confidence 7789999987776665555442 2233456999999999999999998
No 84
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.56 E-value=1.9e-14 Score=105.12 Aligned_cols=164 Identities=13% Similarity=0.159 Sum_probs=90.4
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC------CeEeeHHHHHHHHHHcCCCcH-HHHHHHHHcCCCCCHHHHHHHH
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLL 89 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~------~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 89 (215)
...++.+|+|+|++||||||+++.|++.++ +.+++.+. ++..+.....+. ......+ ......+
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~-~r~~l~~~~~~~~~~r~~~~--------~~~~~~~ 91 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN-IRFGLNKDLGFSEADRNENI--------RRIAEVA 91 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH-HTTTTTTTCCSSHHHHHHHH--------HHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH-HhhhhccccCCCHHHHHHHH--------HHHHHHH
Confidence 345678999999999999999999999886 77777544 333221111111 0000000 0011122
Q ss_pred HHHHHccCCCeEEEeCCCCC-HHHHHHHHHh-c-------CCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 028031 90 QKAMEESGNDKFLIDGFPRN-EENRAAFEAV-T-------KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF 160 (215)
Q Consensus 90 ~~~~~~~~~~~~iidg~~~~-~~~~~~~~~~-~-------~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~ 160 (215)
...+. .+..||+| +... ......+..+ . ...|+++|||++|++++.+|+. | + .+.+.-
T Consensus 92 ~~~l~--~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~-r----~-----~~~~~r 158 (211)
T 1m7g_A 92 KLFAD--SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDP-K----G-----LYKKAR 158 (211)
T ss_dssp HHHHH--TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCT-T----C-----HHHHHH
T ss_pred HHHHH--CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhh-H----H-----HHHHHH
Confidence 23332 26788999 4332 2223333332 1 1257899999999999999951 1 0 000011
Q ss_pred HHHhhcchhHHHHHHhc-CcEEEEcCCC-CHHHHHHHHHHhhCC
Q 028031 161 KVFLESSLPVVQYYEAK-GKVRKIDAAK-PVAEVFDAVKAVFTP 202 (215)
Q Consensus 161 ~~~~~~~~~~~~~~~~~-~~~~~id~~~-~~~e~~~~i~~~l~~ 202 (215)
..+......+...|... ...++||++. ++++++++|...+..
T Consensus 159 ~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 159 EGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp HTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred hcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 11111111122223321 2247888877 999999999988853
No 85
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.54 E-value=1.8e-14 Score=106.61 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=40.9
Q ss_pred CCCCcEEEEEecCHHHHHHHHhhccCCCCCCc--HHHHHHHHHHHhhcchhHHHHH--HhcCcEEEEcCCCCHHHHHHHH
Q 028031 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDN--VETIRKRFKVFLESSLPVVQYY--EAKGKVRKIDAAKPVAEVFDAV 196 (215)
Q Consensus 121 ~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~~~e~~~~i 196 (215)
...||++|||++|++++.+|+.+| ++..+. ...+.+++...+..+. ..| .....+++||++.++++++++|
T Consensus 144 ~~~pD~vi~Ld~~~e~~~~Ri~~R--~r~~e~~~~~~~~~rv~~~~~~~~---~~~~~~~~~~~~vId~~~~~eev~~~I 218 (230)
T 2vp4_A 144 HVQADLIIYLRTSPEVAYERIRQR--ARSEESCVPLKYLQELHELHEDWL---IHQRRPQSCKVLVLDADLNLENIGTEY 218 (230)
T ss_dssp CCCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHH---TSCCSSCCCEEEEEECCC---------
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHc--CCcccccCcHHHHHHHHHHHHHHH---HHhcccCCCCEEEEECCCCHHHHHHHH
Confidence 578999999999999999999888 554332 1245555554433211 011 2344678999999999999999
Q ss_pred HHhhCCCc
Q 028031 197 KAVFTPKD 204 (215)
Q Consensus 197 ~~~l~~~~ 204 (215)
.+.+....
T Consensus 219 ~~~l~~~~ 226 (230)
T 2vp4_A 219 QRSESSIF 226 (230)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 99887654
No 86
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.50 E-value=6.5e-13 Score=94.41 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---CCeEeeHH-HHHHHHHHcCCCcH-HHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAG-DLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQKAME 94 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (215)
++.+|+|+|++||||||+++.|++.+ |+.++..+ +.++..+....... ......+.. .......+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 74 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRR---------IAEVAKLFA 74 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHH---------HHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHH---------HHHHHHHHH
Confidence 56789999999999999999999988 87666332 33332211111110 000000000 111111122
Q ss_pred ccCCCeEEEeCCCCCH----HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhH
Q 028031 95 ESGNDKFLIDGFPRNE----ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV 170 (215)
Q Consensus 95 ~~~~~~~iidg~~~~~----~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (215)
. .+. +++.++.... .....+.. ....|+.+|||++|++++.+|+.+| ...+....++ .....+
T Consensus 75 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~e~~~~R~~~~------~~~~~~~~~~----~~~~~~ 141 (179)
T 2pez_A 75 D-AGL-VCITSFISPYTQDRNNARQIHE-GASLPFFEVFVDAPLHVCEQRDVKG------LYKKARAGEI----KGFTGI 141 (179)
T ss_dssp H-TTC-EEEEECCCCCHHHHHHHHHHHH-HTTCCEEEEEEECCHHHHHHHCTTS------HHHHHHTTSS----CSCBTT
T ss_pred H-CCC-EEEEecCCcchHHHHHHHHHhh-ccCCCeEEEEEeCCHHHHHHHHhhh------hHHHHhcccc----cccccC
Confidence 2 243 4444443221 22222222 3346789999999999999997643 0000000000 000000
Q ss_pred HHHHH--hcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028031 171 VQYYE--AKGKVRKIDAAKPVAEVFDAVKAVFT 201 (215)
Q Consensus 171 ~~~~~--~~~~~~~id~~~~~~e~~~~i~~~l~ 201 (215)
...|. ....+++.+++.++++++++|...+.
T Consensus 142 ~~~~~~~~~ad~vid~~~~~~~~~~~~i~~~l~ 174 (179)
T 2pez_A 142 DSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQ 174 (179)
T ss_dssp TBCCCCCSSCSEEEETTTSCHHHHHHHHHHHHH
T ss_pred CccccCCCCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 01111 12234444555699999999998875
No 87
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.50 E-value=6.3e-13 Score=96.21 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=87.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh---CCe--EeeHHHHHHHHHHcCCCcH-HHHHHHHHcCCCCCHHHHHHHHHH
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GYT--HLSAGDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQK 91 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~---~~~--~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 91 (215)
..++.+|+|.|++||||||+++.|+..+ |.. +++.+++.. .+....... +.....+. ....+..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~ 91 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH-GLNRDLSFKAEDRAENIR---------RVGEVAK 91 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTTTCCSSHHHHHHHHH---------HHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh-HhhcccCcChHHHHHHHH---------HHHHHHH
Confidence 3567899999999999999999999998 555 777765432 111111111 00000000 0111222
Q ss_pred HHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh------hccCCCCCCcHHHHHHHHHHHhh
Q 028031 92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL------NRNQGREDDNVETIRKRFKVFLE 165 (215)
Q Consensus 92 ~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~------~r~~~~~~~~~~~~~~~~~~~~~ 165 (215)
.+.. .+..++.+........+..+..+......+.|||++|.+++.+|+. .|. +.... ...
T Consensus 92 ~~~~-~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~-~~~~~-~~~---------- 158 (200)
T 3uie_A 92 LFAD-AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARA-GKIKG-FTG---------- 158 (200)
T ss_dssp HHHH-TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHT-TSSCS-CBT----------
T ss_pred HHHh-CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhc-CCCCC-CCC----------
Confidence 2222 2667776654444455555555222223457999999999999972 220 11000 000
Q ss_pred cchhHHHHHHhc-CcEEEEcCC--CCHHHHHHHHHHhhC
Q 028031 166 SSLPVVQYYEAK-GKVRKIDAA--KPVAEVFDAVKAVFT 201 (215)
Q Consensus 166 ~~~~~~~~~~~~-~~~~~id~~--~~~~e~~~~i~~~l~ 201 (215)
+...|..+ ...++||++ .+++++++.|...+.
T Consensus 159 ----~~~~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~ 193 (200)
T 3uie_A 159 ----IDDPYEPPLNCEISLGREGGTSPIEMAEKVVGYLD 193 (200)
T ss_dssp ----TTBCCCCCSSCSEEECCSSCCCHHHHHHHHHHHHH
T ss_pred ----CCCcCcCCCCCCEEEecCCCCCHHHHHHHHHHHHH
Confidence 00112221 234677774 599999999998885
No 88
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.48 E-value=1.9e-12 Score=92.15 Aligned_cols=165 Identities=15% Similarity=0.216 Sum_probs=98.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC-CeEeeHHHHHHHHHHc---CC----CcHHHHHHHHHcCCCCCHHHH--------H
Q 028031 23 VVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKS---GS----ENGTMIQNMIKEGKIVPSEVT--------I 86 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~-~~~i~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~--------~ 86 (215)
.|+|+||+|||||||++.|.+.+. ...++.....|....+ +. -..+.+......+.++..... .
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~ 82 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV 82 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence 389999999999999999988763 2223322222221111 11 122455666666655432211 4
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCC-CCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhh
Q 028031 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE 165 (215)
Q Consensus 87 ~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~-~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~ 165 (215)
..+...+.+ |..+|+|.. ......+.. ... .+..++++..+.+++.+|+.+| +. +..+.+.+|+.....
T Consensus 83 ~~v~~~l~~--g~~vil~id---~~g~~~~k~-~~~~~~~~Ifi~pps~e~L~~RL~~R--g~--e~~e~i~~Rl~~a~~ 152 (186)
T 1ex7_A 83 ASVKQVSKS--GKTCILDID---MQGVKSVKA-IPELNARFLFIAPPSVEDLKKRLEGR--GT--ETEESINKRLSAAQA 152 (186)
T ss_dssp HHHHHHHHH--TSEEEEECC---HHHHHHHHT-CGGGCCEEEEEECSCHHHHHHHHHHH--CC--SCHHHHHHHHHHHHH
T ss_pred ceeeehhhC--CCEEEecCC---HHHHHHHHH-hcccCceEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHHHHHH
Confidence 556666655 789999953 334444443 222 4544555566789999999988 43 567888888876554
Q ss_pred cchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 166 SSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 166 ~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
... .........+++|. ++++.++++..+|..
T Consensus 153 e~~---~~~~~~fD~vIvNd--dle~a~~~l~~iI~a 184 (186)
T 1ex7_A 153 ELA---YAETGAHDKVIVND--DLDKAYKELKDFIFA 184 (186)
T ss_dssp HHH---HHTTTCSSEEEECS--SHHHHHHHHHHHHTT
T ss_pred HHh---hccccCCcEEEECc--CHHHHHHHHHHHHHh
Confidence 211 11111224556654 799999999988853
No 89
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.45 E-value=3.3e-13 Score=100.51 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=47.6
Q ss_pred CCCcEEEEEecCHHHHHHHHhhccCCCCCCc--HHHHHHHHHHHhhcc-----hhH-HHHHHhcCcEEEEcCCCCHHHHH
Q 028031 122 IEPEFVLFFDCSEEEMERRILNRNQGREDDN--VETIRKRFKVFLESS-----LPV-VQYYEAKGKVRKIDAAKPVAEVF 193 (215)
Q Consensus 122 ~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~--~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~id~~~~~~e~~ 193 (215)
..||++|||++|++++.+|+.+| ++..+. .....+++...+..+ .++ ...+ ....++++|++.+++++.
T Consensus 148 ~~pd~~i~l~~~~~~~~~R~~~R--~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~Id~~~~~~~v~ 224 (241)
T 2ocp_A 148 ITLHGFIYLQASPQVCLKRLYQR--AREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLVLDVNDDFSEEV 224 (241)
T ss_dssp HCCCEEEEEECCHHHHHHHHHHS--CCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEEEECCSCTTTCH
T ss_pred cCCCEEEEEECCHHHHHHHHHhc--CCcccccCCHHHHHHHHHHHHHHHhhcccccccccc-CCCCEEEEECCCChhhCH
Confidence 37999999999999999999988 544333 123334443332211 000 0012 345689999988887766
Q ss_pred HHHHHhhC
Q 028031 194 DAVKAVFT 201 (215)
Q Consensus 194 ~~i~~~l~ 201 (215)
+.+...+.
T Consensus 225 ~~i~~i~~ 232 (241)
T 2ocp_A 225 TKQEDLMR 232 (241)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655554
No 90
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.44 E-value=1.8e-11 Score=88.74 Aligned_cols=169 Identities=14% Similarity=0.230 Sum_probs=87.8
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH---HcCC----CcHHHHHHHHHcCCCCCH-------
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI---KSGS----ENGTMIQNMIKEGKIVPS------- 82 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~------- 82 (215)
.+.++.+|+|.||+||||||+++.|+..+....+...+..+... ..+. .....+......+.....
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERH 82 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEE
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeeccc
Confidence 45567899999999999999999999876422222111100000 0000 001111111111110000
Q ss_pred -HHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028031 83 -EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK 161 (215)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~ 161 (215)
......+...+.. +..+++|+.+ .....+.. ....+..+++..++++++.+|+.+| ++ +..+.+.+|+.
T Consensus 83 ~~~~~~~i~~~l~~--g~~vi~d~~~---~~~~~~~~-~~~~~~~v~~~~~~~e~l~~Rl~~R--~~--~~~~~i~~rl~ 152 (205)
T 3tr0_A 83 YGTEKDWVLRQLKA--GRDVLLEIDW---QGARQIRE-LFPPALSIFILPPSIEALRERLIKR--RQ--DDTAIIEQRLA 152 (205)
T ss_dssp EEEEHHHHHHHHHT--TCEEEEECCH---HHHHHHHH-HCTTCEEEEEECSCHHHHHHHHHTC--TT--SCSSTHHHHHH
T ss_pred ccchHHHHHHHHHc--CCeEEEEECH---HHHHHHHH-hCCCcEEEEEECcCHHHHHHHHHHh--CC--CCHHHHHHHHH
Confidence 0001233444433 6788999643 33334444 4555554444455799999999988 33 22344556665
Q ss_pred HHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 162 VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
..... ..++ ....++++|+ +++++++++.+.+..
T Consensus 153 ~~~~~----~~~~-~~~d~vi~n~--~~~~~~~~l~~~i~~ 186 (205)
T 3tr0_A 153 LAREE----MAHY-KEFDYLVVND--NFDQAVQNLIHIISA 186 (205)
T ss_dssp HHHHH----HTTG-GGCSEEEECS--SHHHHHHHHHHHHHH
T ss_pred HHHHH----Hhcc-cCCCEEEECC--CHHHHHHHHHHHHHH
Confidence 55332 1112 2334455544 899999999988853
No 91
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.44 E-value=1.7e-12 Score=107.79 Aligned_cols=161 Identities=16% Similarity=0.204 Sum_probs=88.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---CCeEeeH-HHHHHHHHHcCCCcH-HHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSA-GDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQKAME 94 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (215)
++++|+|+|+|||||||+++.|++.+ |+.++.. +|.++..+.....+. ..-...+. .+.+.+...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r--------~i~eva~~~l- 121 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR--------RIAEVAKLFA- 121 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHH--------HHHHHHHHHH-
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHH--------HHHHHHHHHH-
Confidence 67899999999999999999999999 8766654 354544322211111 11111111 0112122222
Q ss_pred ccCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhH
Q 028031 95 ESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV 170 (215)
Q Consensus 95 ~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (215)
. .+..++.+...........+..+ ....++++|||++|++++.+|+.++ ...+..+ +..+.. .
T Consensus 122 ~-~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~--------~~~~~~----~ 188 (630)
T 1x6v_B 122 D-AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGE--------IKGFTG----I 188 (630)
T ss_dssp H-TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC------------CBT----T
T ss_pred h-CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhh--------HHHHHH----h
Confidence 2 26677777321111222222221 3445788999999999999998643 0011111 001111 1
Q ss_pred HHHHHhc-CcEEEEcCC-CCHHHHHHHHHHhhCC
Q 028031 171 VQYYEAK-GKVRKIDAA-KPVAEVFDAVKAVFTP 202 (215)
Q Consensus 171 ~~~~~~~-~~~~~id~~-~~~~e~~~~i~~~l~~ 202 (215)
...|... ...++||++ .++++++++|...+..
T Consensus 189 ~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~ 222 (630)
T 1x6v_B 189 DSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQE 222 (630)
T ss_dssp TBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHh
Confidence 1113211 123677775 6999999999988864
No 92
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=1.4e-12 Score=95.03 Aligned_cols=167 Identities=16% Similarity=0.277 Sum_probs=87.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHH---cC----CCcHHHHHHHHHcCCCCCHH-------
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIK---SG----SENGTMIQNMIKEGKIVPSE------- 83 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~------- 83 (215)
.++.+|+|.||+||||||+++.|++.++- .........+.... .+ ......+...+..+.++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y 85 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY 85 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence 45779999999999999999999998742 11111000000000 00 00112222222222211100
Q ss_pred -HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028031 84 -VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKRFK 161 (215)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~~~~~~~~~~~~~~~~ 161 (215)
.....+...+.. +..+++|.. ......+.. ....+. +||+.. +.+++.+|+.+| +. +..+.+.+|+.
T Consensus 86 g~~~~~i~~~l~~--g~~vild~~---~~g~~~~~~-~~~~~~-~i~i~~ps~~~l~~Rl~~R--~~--~~~e~i~~Rl~ 154 (208)
T 3tau_A 86 GTPLEYVEEKLAA--GVDIFLEIE---VQGAMQVRK-AMPEGI-FIFLTPPDLSELKNRIIGR--GT--ESMEVVEERME 154 (208)
T ss_dssp EEEHHHHHHHHHT--TCCEEEECC---HHHHHHHHH-HCTTSE-EEEEECTTTTTSSCC-----------CCHHHHHHHH
T ss_pred CCcHHHHHHHHHc--CCeEEEEee---HHHHHHHHH-hCCCeE-EEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHH
Confidence 002334444443 788999863 333444454 555554 555554 588999999987 32 34577888877
Q ss_pred HHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 162 VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
..... ..++ ....++++|+ +++++++++..++...
T Consensus 155 ~~~~e----~~~~-~~~d~vivN~--~~~~~~~~l~~~i~~~ 189 (208)
T 3tau_A 155 TAKKE----IEMM-ASYDYAVVND--VVANAVQKIKGIVETE 189 (208)
T ss_dssp HHHHH----HHHG-GGSSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHhh-ccCCEEEECc--CHHHHHHHHHHHHHHH
Confidence 65432 1222 2334556654 6999999999888643
No 93
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.40 E-value=2.6e-12 Score=96.32 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=70.6
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC--CeEeeHHHHHHHHH------Hc--CCCcHHHHHHHHHcCCCCCHHHHH
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEI------KS--GSENGTMIQNMIKEGKIVPSEVTI 86 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~ 86 (215)
...+|.+|+|.|+|||||||+++.|++.++ +.+++.|. ++..+ .. +....+..... ......
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~-~r~~~~~~~~i~~~~g~~~~~~~~~~-------~~~~~~ 99 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS-FRSQHPHYLELQQEYGKDSVEYTKDF-------AGKMVE 99 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG-GGTTSTTHHHHHTTCSSTTHHHHHHH-------HHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH-HHHhchhHHHHHHHcCchHHHHhhHH-------HHHHHH
Confidence 345688999999999999999999999987 55666654 43321 11 11111111100 011112
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028031 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 87 ~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
..+...+. .+..+|+|+++........+... ....+..++++.+|++++.+|..+|
T Consensus 100 ~~~~~~~~--~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R 157 (253)
T 2p5t_B 100 SLVTKLSS--LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR 157 (253)
T ss_dssp HHHHHHHH--TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence 23333332 25689999988765444333321 1222234678899999999999888
No 94
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.40 E-value=1.6e-14 Score=105.60 Aligned_cols=168 Identities=15% Similarity=0.196 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeH-------------HHHHHHHHHcCC---CcHHHHHHHHHcCCCCCHHHH
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSA-------------GDLLRAEIKSGS---ENGTMIQNMIKEGKIVPSEVT 85 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~-------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 85 (215)
++|+|+|++||||||+++.|++.++...++. ++.++..+.... .........+...... ..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~--~~- 77 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRA--GA- 77 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHH--EE-
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHh--hh-
Confidence 4799999999999999999999985321111 223333221100 0000000000000000 00
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCHH--H------------HHHHHHh-----cCCCCcEEEEEecCHHHHHHHHhhccC
Q 028031 86 IKLLQKAMEESGNDKFLIDGFPRNEE--N------------RAAFEAV-----TKIEPEFVLFFDCSEEEMERRILNRNQ 146 (215)
Q Consensus 86 ~~~~~~~~~~~~~~~~iidg~~~~~~--~------------~~~~~~~-----~~~~~~~~i~L~~~~e~~~~R~~~r~~ 146 (215)
...+...+. .+..+|+|+++.... + ...+..+ ..+.||.+|||++|++++.+|+.+|..
T Consensus 78 ~~~i~~~l~--~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~ 155 (214)
T 1gtv_A 78 VHTIQGLCR--GYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQ 155 (214)
T ss_dssp HHHHHHEEE--EEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--CCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccc
Confidence 011111111 267899999764320 0 1112221 124789999999999999999998811
Q ss_pred ---CCCCC---cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHH
Q 028031 147 ---GREDD---NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198 (215)
Q Consensus 147 ---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~ 198 (215)
++..+ ....+.+++...+.. +...+. ...+++||++.++++++++|..
T Consensus 156 ~~~~~~~d~~e~~~~~~~~~~~~~~~---~~~~~~-~~~~~vId~~~~~~~v~~~i~~ 209 (214)
T 1gtv_A 156 RDPGRARDNYERDAELQQRTGAVYAE---LAAQGW-GGRWLVVGADVDPGRLAATLAP 209 (214)
T ss_dssp EBBEEEEEEEEEEHHHHHHHHHHHHH---HHHEEE-EEEEEEEEEEEBHHHHHHHHC-
T ss_pred cccccccccccccHHHHHHHHHHHHH---HHHhCC-CCCEEEEeCCCCHHHHHHHhcC
Confidence 11001 113444554332211 111010 1356889998899999888753
No 95
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.37 E-value=7.6e-12 Score=103.17 Aligned_cols=161 Identities=16% Similarity=0.111 Sum_probs=89.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC-----eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (215)
.+++|+++|++||||||+++.|++.++. .+++.| .++..+.....+...-.... .......+...+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D-~ir~~l~~~~~f~~~er~~~-------l~~i~~~~~~~l- 441 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD-VVRTHLSRGLGFSKEDRITN-------ILRVGFVASEIV- 441 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH-HHHHHTCTTCCSSHHHHHHH-------HHHHHHHHHHHH-
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch-HhhhhhcccccccHHHHHHH-------HHHHHHHHHHHH-
Confidence 4689999999999999999999999863 677764 45554332222221100000 000111222222
Q ss_pred ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCc-EEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHH
Q 028031 95 ESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY 173 (215)
Q Consensus 95 ~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~-~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (215)
. .+..+|+|+.......+..+.. ....++ ++|||++|.+++.+|+.++ . ........+..+.....+
T Consensus 442 ~-~G~~VI~d~~~~~~~~r~~~~~-~l~~~d~~vV~L~~~~e~~~~Rl~r~---~---~~~~~~~~i~~~~~vr~~---- 509 (546)
T 2gks_A 442 K-HNGVVICALVSPYRSARNQVRN-MMEEGKFIEVFVDAPVEVCEERDVKG---L---YKKAKEGLIKGFTGVDDP---- 509 (546)
T ss_dssp H-TTCEEEEECCCCCHHHHHHHHT-TSCTTCEEEEEEECCGGGHHHHCCSS---H---HHHC------CCBTTTBC----
T ss_pred h-CCCEEEEEcCCCCHHHHHHHHH-HhhcCCEEEEEEeCCHHHHHHHhhcc---c---cccccHHHHHHHHhhhhc----
Confidence 2 2788999975443444444444 222356 7999999999999997522 0 000000111111111111
Q ss_pred HHh-cCcEEEEcCC-CCHHHHHHHHHHhhC
Q 028031 174 YEA-KGKVRKIDAA-KPVAEVFDAVKAVFT 201 (215)
Q Consensus 174 ~~~-~~~~~~id~~-~~~~e~~~~i~~~l~ 201 (215)
|.. ....++||++ .++++++++|...+.
T Consensus 510 ~e~~~~adivIDts~~s~eev~~~I~~~L~ 539 (546)
T 2gks_A 510 YEPPVAPEVRVDTTKLTPEESALKILEFLK 539 (546)
T ss_dssp CCCCSSCSEEEETTTSCHHHHHHHHHHHHH
T ss_pred cccccCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 111 1124677774 799999999998875
No 96
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.35 E-value=3.7e-12 Score=104.56 Aligned_cols=153 Identities=16% Similarity=0.245 Sum_probs=83.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCC-----eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHH--
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-- 90 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 90 (215)
...+.+|+++|+|||||||+|+.|++.+++ .+++.|++.+.. .........+......+...........+.
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~-~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~ 110 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA-VKQYSSYNFFRPDNEEAMKVRKQCALAALRDV 110 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh-ccCCccccccCcccHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999853 457888855443 332111100000000000000011111122
Q ss_pred -HHHHccCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecC-HHHHHHHHhhccCCCCC----C---cHHHHHHH
Q 028031 91 -KAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCS-EEEMERRILNRNQGRED----D---NVETIRKR 159 (215)
Q Consensus 91 -~~~~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~-~e~~~~R~~~r~~~~~~----~---~~~~~~~~ 159 (215)
..+....+..+|+|+.......+..+..+ ......++|++.|+ ++++.+|+..|...++. + ..+.+.+|
T Consensus 111 ~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~~R 190 (520)
T 2axn_A 111 KSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKR 190 (520)
T ss_dssp HHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHHHH
Confidence 22222348899999988777666555442 11122346666676 67777888666212211 1 12355677
Q ss_pred HHHHhhcchhHH
Q 028031 160 FKVFLESSLPVV 171 (215)
Q Consensus 160 ~~~~~~~~~~~~ 171 (215)
+..|...+.++.
T Consensus 191 i~~y~~~Yepi~ 202 (520)
T 2axn_A 191 ISCYEASYQPLD 202 (520)
T ss_dssp HHHHHTTCCCCC
T ss_pred HHhhhhhhcccC
Confidence 777777666653
No 97
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.31 E-value=2.9e-11 Score=100.18 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=86.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC------CeEeeHHHHHHHHHHcCCCcHHHHH-HHHHcCCCCCHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTMIQ-NMIKEGKIVPSEVTIKLLQK 91 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 91 (215)
.++++|+|+|+|||||||+|+.|++.++ +.+++.| .++..+.....+...-. ..+. .....+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D-~ir~~l~~~~~f~~~er~~~i~--------ri~~v~~~ 464 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD-TVRHELSSELGFTREDRHTNIQ--------RIAFVATE 464 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH-HHHHHTCTTCCCSHHHHHHHHH--------HHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH-HHHHHhccccCCChhHHHHHHH--------HHHHHHHH
Confidence 4578999999999999999999999986 3556654 45544322211111000 0000 01112222
Q ss_pred HHHccCCCeEEEeCCCCCHHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhH
Q 028031 92 AMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV 170 (215)
Q Consensus 92 ~~~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (215)
+.. .+..+|.+........+..+..+ ....+.++|||++|.+++.+|..++ .........+..+.....+
T Consensus 465 -~~~-~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~------l~~~~~~~~i~~~~~~r~~- 535 (573)
T 1m8p_A 465 -LTR-AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRG------IYAAARRGEIKGFTGVDDP- 535 (573)
T ss_dssp -HHH-TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSC------HHHHHHTTSSSSCBTTTBC-
T ss_pred -HHh-CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhccc------chhhhhHHHHHHHHhcccc-
Confidence 222 26677777432222333333331 1112458999999999999995321 0000000001111111111
Q ss_pred HHHHHh-cCcEEEEcCC-CCHHHHHHHHHHhhCC
Q 028031 171 VQYYEA-KGKVRKIDAA-KPVAEVFDAVKAVFTP 202 (215)
Q Consensus 171 ~~~~~~-~~~~~~id~~-~~~~e~~~~i~~~l~~ 202 (215)
|.. ....++||++ .++++++++|...+..
T Consensus 536 ---~~~p~~~dl~IDts~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 536 ---YETPEKADLVVDFSKQSVRSIVHEIILVLES 566 (573)
T ss_dssp ---CCCCSSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred ---ccccCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 211 1234778875 5999999999988853
No 98
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.30 E-value=3e-12 Score=92.89 Aligned_cols=166 Identities=16% Similarity=0.233 Sum_probs=68.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHHHHH---cCC----CcHHHHHHHHHcCCCCCHH-------
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIK---SGS----ENGTMIQNMIKEGKIVPSE------- 83 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~------- 83 (215)
.++.+|+|+|++||||||+++.|+..+ ....+..++..+.... .+. .....+......+......
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY 83 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence 356799999999999999999999877 2121111111110000 000 0111222222222211100
Q ss_pred -HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe-cCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028031 84 -VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFK 161 (215)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~-~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~ 161 (215)
.....+...+.. +..+|+|+.+.. ...+.. ..+.+ .++++. ++.+++.+|+.+| + .+..+.+.+++.
T Consensus 84 g~~~~~i~~~l~~--g~~vv~d~~~~~---~~~~~~-~~~~~-~~i~~~~~~~~~~~~Rl~~R--~--~~~~~~~~~rl~ 152 (207)
T 2j41_A 84 GTPVQYVKDTMDE--GHDVFLEIEVEG---AKQVRK-KFPDA-LFIFLAPPSLEHLRERLVGR--G--TESDEKIQSRIN 152 (207)
T ss_dssp EEEHHHHHHHHHT--TCEEEEECCGGG---HHHHHH-HCTTS-EEEEEECCC----------------------------
T ss_pred CCCHHHHHHHHHc--CCeEEEEECHHH---HHHHHH-hcCCe-EEEEEECCCHHHHHHHHHhc--C--CCCHHHHHHHHH
Confidence 001233333433 678999975432 233333 22222 345544 5688999999877 3 233456666666
Q ss_pred HHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 162 VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
.+..... ++. ...++++ ++ ++++++++|...+..
T Consensus 153 ~~~~~~~----~~~-~~d~vI~-n~-~~e~~~~~i~~~l~~ 186 (207)
T 2j41_A 153 EARKEVE----MMN-LYDYVVV-ND-EVELAKNRIQCIVEA 186 (207)
T ss_dssp ---CGGG----GGG-GCSEEEE-CS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHh----ccc-cCCEEEE-CC-CHHHHHHHHHHHHHH
Confidence 5543321 122 2334444 44 899999999988864
No 99
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.26 E-value=3.3e-11 Score=91.94 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR 57 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~ 57 (215)
++++|+|+|++||||||+++.|++.++ +.+++.|++++
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 567899999999999999999999887 78999988875
No 100
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.26 E-value=3.1e-11 Score=86.27 Aligned_cols=167 Identities=15% Similarity=0.239 Sum_probs=66.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHH---cC----CCcHHHHHHHHHcCCCCCHH--------H
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIK---SG----SENGTMIQNMIKEGKIVPSE--------V 84 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~--------~ 84 (215)
+.+++|.||+||||||+++.|+..+.- ..+...+..+.... .+ ......+......+.+.... .
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccC
Confidence 357899999999999999999876531 00000000000000 00 00111222222221111000 0
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH-HHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028031 85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQGREDDNVETIRKRFKVF 163 (215)
Q Consensus 85 ~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~-e~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 163 (215)
....++..+.. +..+++|.. ......+....... ..+||+.+|. +++.+|+.+| +. +..+.+.+|+...
T Consensus 81 ~~~~i~~~l~~--g~~~il~~~---~~g~~~l~~~~~~~-~~~i~i~~p~~~~l~~Rl~~R--g~--~~~~~i~~rl~~~ 150 (186)
T 3a00_A 81 TVASVKQVSKS--GKTCILDID---MQGVKSVKAIPELN-ARFLFIAPPSVEDLKKRLEGR--GT--ETEESINKRLSAA 150 (186)
T ss_dssp EHHHHHHHHHT--TCEEEEECC---HHHHHHHHTCGGGC-CEEEEEECSCC-----------------------------
T ss_pred cHHHHHHHHHc--CCeEEEEEc---HHHHHHHHHhcCCC-eEEEEEECcCHHHHHHHHHhc--CC--CCHHHHHHHHHHH
Confidence 02334444443 788899842 33333333201223 3578888865 9999999988 43 3445666676654
Q ss_pred hhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
..... ..+......+++|+ +.++.++++..++..
T Consensus 151 ~~~~~---~~~~~~~d~vi~nd--~~~~a~~~l~~~i~~ 184 (186)
T 3a00_A 151 QAELA---YAETGAHDKVIVND--DLDKAYKELKDFIFA 184 (186)
T ss_dssp -----------CCCCSEEEECS--SHHHHHHHHHHHHTT
T ss_pred HHHHH---hhcccCCcEEEECc--CHHHHHHHHHHHHHh
Confidence 43211 11112234555544 899999999988864
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.23 E-value=9.1e-11 Score=85.40 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=32.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC--CeEeeHHHHH
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLL 56 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~~~~~ 56 (215)
..++.+|+|.|++||||||+++.|+..++ +.+++.|.++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 34678999999999999999999999988 8888876654
No 102
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.23 E-value=7.5e-11 Score=87.15 Aligned_cols=157 Identities=15% Similarity=0.182 Sum_probs=69.1
Q ss_pred cccCCCCCeEEEEEcCCCCChHHHHHHHH-HHhC----------------------CeEeeHHHHHHHHHHcCCCcHHHH
Q 028031 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIV-EHFG----------------------YTHLSAGDLLRAEIKSGSENGTMI 70 (215)
Q Consensus 14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La-~~~~----------------------~~~i~~~~~~~~~~~~~~~~~~~~ 70 (215)
-++...++.+|+|+||+||||||+++.|+ ..+. +...+... +.
T Consensus 20 ~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~-~~------------- 85 (231)
T 3lnc_A 20 GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREE-FL------------- 85 (231)
T ss_dssp --CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHH-HH-------------
T ss_pred CCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHH-hh-------------
Confidence 34444567899999999999999999999 6552 11222211 11
Q ss_pred HHHHHcCCCCC--------HHHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcC-CCCcEEEEEecCHHHHHHHH
Q 028031 71 QNMIKEGKIVP--------SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK-IEPEFVLFFDCSEEEMERRI 141 (215)
Q Consensus 71 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~-~~~~~~i~L~~~~e~~~~R~ 141 (215)
.....+.... .......+...+.. +..+++|.. ......+.. .. ..+..++.+.++.+++.+|+
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~vild~~---~~g~~~~~~-~~~~~~~~v~v~~~~~~~l~~Rl 158 (231)
T 3lnc_A 86 -RLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDK--GVSTLLVID---WQGAFKFME-MMREHVVSIFIMPPSMEELRRRL 158 (231)
T ss_dssp -HHHHTTCEEEEEEETTEEEEEECTTHHHHHHH--TCEEEEECC---HHHHHHHHH-HSGGGEEEEEEECSCHHHHHHC-
T ss_pred -hhhhcCceehhhhhccccCCCCHHHHHHHHHc--CCeEEEEcC---HHHHHHHHH-hcCCCeEEEEEECCcHHHHHHHH
Confidence 1111111100 00001112233332 567888832 333334443 33 33333444456889999999
Q ss_pred hhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 142 LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 142 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
.+| + ....+.+.+++....... . +.....++++| + +++++.+++...+..
T Consensus 159 ~~R--~--~~~~~~i~~rl~~~~~~~----~-~~~~~d~vI~n-~-~~e~~~~~l~~~i~~ 208 (231)
T 3lnc_A 159 CGR--R--ADDSEVVEARLKGAAFEI----S-HCEAYDYVIVN-E-DIEETADRISNILRA 208 (231)
T ss_dssp -----------------CHHHHHHHH----T-TGGGSSEEEEC-S-SHHHHHHHHHHHHHH
T ss_pred HHc--C--CCCHHHHHHHHHHHHHHH----h-hhcCCeEEEEC-c-CHHHHHHHHHHHHHH
Confidence 877 3 234455666665443321 1 12223445554 4 799999999988864
No 103
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.23 E-value=1.1e-10 Score=87.03 Aligned_cols=176 Identities=16% Similarity=0.228 Sum_probs=89.5
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCe----------EeeHHHHHHHHHHcCCCcHHHHHHHHHc-C----CC
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT----------HLSAGDLLRAEIKSGSENGTMIQNMIKE-G----KI 79 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~ 79 (215)
++.-.++.+|.|+|++||||||+++.|+..+|.. +++.+.+++. ....+........ . ..
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~-----l~~~~~~~~~~~~~~~~~~~~ 93 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKV-----LTAEQKAKALKGQYNFDHPDA 93 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCC-----CCHHHHHHHHTTCCCTTSGGG
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccc-----cCHhHhhhhhccCCCCCCccc
Confidence 4555678899999999999999999999988854 5665543211 0011111000000 0 00
Q ss_pred CCHHHHHHHHHHHH----------------------HccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028031 80 VPSEVTIKLLQKAM----------------------EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (215)
Q Consensus 80 ~~~~~~~~~~~~~~----------------------~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~ 137 (215)
...+...+.+.... ...+...+|+|+...... ..+.. ..+..|++.++.+..
T Consensus 94 ~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~--~~l~~----~~~~~i~v~th~~~~ 167 (245)
T 2jeo_A 94 FDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYS--QEIRD----MFHLRLFVDTDSDVR 167 (245)
T ss_dssp BCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTS--HHHHT----TCSEEEEEECCHHHH
T ss_pred ccHHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCcccccc--HHHHH----hcCeEEEEECCHHHH
Confidence 11111222222110 011245889998332111 12222 147899999998777
Q ss_pred HHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHH----HHhcCcEEE---EcCCCCHHHHHHHHHHhhCCCcc
Q 028031 138 ERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY----YEAKGKVRK---IDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 138 ~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
..|...|.. ..+...+.+.+++.. ...+-... ......+++ +|++.+++++.++|...+.....
T Consensus 168 ~~r~~~r~~-~~G~~~e~~~~~~~~---~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~~~~~~~ 238 (245)
T 2jeo_A 168 LSRRVLRDV-RRGRDLEQILTQYTT---FVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDIC 238 (245)
T ss_dssp HHHHHHHHT-C---CHHHHHHHHHH---THHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHH-HcCCCHHHHHHHHHH---hhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHHHhcchh
Confidence 666655511 112345566555442 11111111 122334444 26777899999999988875443
No 104
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.17 E-value=1.1e-10 Score=84.43 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=55.3
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh---CC--eEeeHHHHHHHHH---HcCCCcHHHHHHHHHcCCCCCHHHHHHH
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRAEI---KSGSENGTMIQNMIKEGKIVPSEVTIKL 88 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~---~~--~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (215)
.+.++.+|+|+|++||||||+++.|+..+ +. .+++.|.+..... ..+...+.. ... ..+....+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~---~~~--~~~d~~~l~~~ 92 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFE---YYY--LQWDVEWLTHQ 92 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHH---HHH--TSSCHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccC---CCc--cccCHHHHHHH
Confidence 35668899999999999999999999876 33 3344454432211 111111111 110 11111211111
Q ss_pred HHHH-----------------------HHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028031 89 LQKA-----------------------MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 89 ~~~~-----------------------~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
+-.. .....+..+|+||....... + ...+|.+||+++|.+++.+|+.+|
T Consensus 93 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~----~~~~d~~i~v~~~~~~~~~R~~~R 164 (201)
T 1rz3_A 93 LFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---W----RPFFDFVVYLDCPREIRFARENDQ 164 (201)
T ss_dssp TGGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---T----GGGCSEEEEECCC-----------
T ss_pred HHHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---H----HhhcCEEEEEeCCHHHHHHHHhcC
Confidence 1000 01112678999985432111 1 123679999999999999999988
No 105
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=99.17 E-value=1.4e-10 Score=94.29 Aligned_cols=182 Identities=13% Similarity=0.202 Sum_probs=94.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCC----CCHHHHHHH
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI----VPSEVTIKL 88 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 88 (215)
..++.+|+++|.|||||||+++.|++.++ ...++.+++.+. ......... .+..... .........
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~-~~g~~~~~~----ifd~~g~~~~r~re~~~~~~ 110 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD-MVKTYKSFE----FFLPDNEEGLKIRKQCALAA 110 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHCSCCCGG----GGCTTCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh-hccCCCccc----ccCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999875 456667664443 332211000 0000000 000111111
Q ss_pred ---HHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe---cCHHHHHHHHhhccCCCCC---CcH----HH
Q 028031 89 ---LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD---CSEEEMERRILNRNQGRED---DNV----ET 155 (215)
Q Consensus 89 ---~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~---~~~e~~~~R~~~r~~~~~~---~~~----~~ 155 (215)
+...+....+.++|+|+.......+..|..........++||+ .+++.+.+|+..+...++. ... +.
T Consensus 111 l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~~~e~~~~~ 190 (469)
T 1bif_A 111 LNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATED 190 (469)
T ss_dssp HHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTSCHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCCCHHHHHHH
Confidence 2344434458899999987777666666442100111356677 4577788887654212221 122 45
Q ss_pred HHHHHHHHhhcchhHHHHH-HhcCcEEEEcCCC------CHHHHHHHHHHhhCCCc
Q 028031 156 IRKRFKVFLESSLPVVQYY-EAKGKVRKIDAAK------PVAEVFDAVKAVFTPKD 204 (215)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~id~~~------~~~e~~~~i~~~l~~~~ 204 (215)
+.+|+..|.....++.... .+...+.++|... ...-+...|.-++.+..
T Consensus 191 ~~~R~~~y~~~ye~l~~~~~~~~~~ik~~d~~~~~~~~~~~g~~~~~~~~~l~n~~ 246 (469)
T 1bif_A 191 FMRRIECYENSYESLDEEQDRDLSYIKIMDVGQSYVVNRVADHIQSRIVYYLMNIH 246 (469)
T ss_dssp HHHHHHHHHTTCCCCCTTTTTTSCEEEEETTTTEEEEECCCSHHHHHHHHHHTTCC
T ss_pred HHHHHHHhccEeEECCccccCCcceEEEEcCccceeccCccccchhhHHHHHhccC
Confidence 5566666666665553210 1122344455321 12334556666665543
No 106
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.16 E-value=1.8e-09 Score=77.15 Aligned_cols=114 Identities=14% Similarity=0.125 Sum_probs=63.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH--ccC
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME--ESG 97 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 97 (215)
+.+|+|.|++||||||+++.|++.++. .+++.+++.... ..+...... ...+.....+.+..... ...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~ 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGYRPPWE--------SDELLALTWKNITDLTVNFLLA 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTCCCGGG--------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-ccccccCcc--------chhHHHHHHHHHHHHHHHHHhc
Confidence 357999999999999999999988765 677776653321 111000000 00000011111111111 112
Q ss_pred CCeEEEeCCCCCHHHHHHHHHh---cCCC-CcEEEEEecCHHHHHHHHhhc
Q 028031 98 NDKFLIDGFPRNEENRAAFEAV---TKIE-PEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~---~~~~-~~~~i~L~~~~e~~~~R~~~r 144 (215)
+..+++|+.. .......+..+ .... ...+++|.++++.+.+|...|
T Consensus 73 ~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r 122 (189)
T 2bdt_A 73 QNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALR 122 (189)
T ss_dssp TCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTS
T ss_pred CCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhc
Confidence 5678999853 23222333321 1332 234788999999999999887
No 107
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=99.16 E-value=3.5e-10 Score=80.89 Aligned_cols=162 Identities=12% Similarity=0.098 Sum_probs=91.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHH-c-CCCcHHHHHHHHHcCCCCC--HHHHH---HH-
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIK-S-GSENGTMIQNMIKEGKIVP--SEVTI---KL- 88 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~--~~~~~---~~- 88 (215)
.+.+|+|+|.|||||+|+|..|.+.+| +.+++.+|.++.... . +-...+.+ ....... ...+. +.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l----~~~~ykE~~R~~m~~~g~~~ 85 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLL----DTSTYKEAFRKDMIRWGEEK 85 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-----------CCSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhc----chhhhHHHHHHHHHHHHHHH
Confidence 456899999999999999999988884 778999999985332 2 22222211 0000000 01111 00
Q ss_pred --------HHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 028031 89 --------LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF 160 (215)
Q Consensus 89 --------~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~ 160 (215)
....+.......+|+||. +....+..+.+ .....-.+|.+.+++++..+|...+..+.. +.. .
T Consensus 86 R~~d~~~~~~~~~~~~~~~~vII~dv-R~~~Ev~~fr~-~~g~~~~iirI~as~~~R~~Rg~~~~~~~D-d~e-s----- 156 (202)
T 3ch4_B 86 RQADPGFFCRKIVEGISQPIWLVSDT-RRVSDIQWFRE-AYGAVTQTVRVVALEQSRQQRGWVFTPGVD-DAE-S----- 156 (202)
T ss_dssp HHHCTTTTHHHHSBTCCCSEEEECCC-CSHHHHHHHHH-HHGGGEEEEEEEECHHHHHHTTCCCCTTTT-TSH-H-----
T ss_pred HhcCchHHHHHHHHhcCCCcEEEeCC-CCHHHHHHHHH-hCCCcEEEEEEECCHHHHHHHhhhcccccc-ccc-c-----
Confidence 111111222458999986 55666777776 433323589999999999999543311222 111 0
Q ss_pred HHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 161 KVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
.+ . +..+ .... ++|+++++.+++.+++..++..+
T Consensus 157 -E~-----g-L~~~-~~~D-~vI~Ndgt~eel~~~v~~ll~~~ 190 (202)
T 3ch4_B 157 -EC-----G-LDNF-GDFD-WVIENHGVEQRLEEQLENLIEFI 190 (202)
T ss_dssp -HH-----T-TTTC-CCCS-EEEEECSCHHHHHHHHHHHHHHH
T ss_pred -cc-----C-CCCC-CcCC-EEEEeCCCHHHHHHHHHHHHHHH
Confidence 01 1 1111 1233 44445569999888887766544
No 108
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=99.15 E-value=3.5e-10 Score=87.35 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
.++++|+|+|+.||||||+++.|++.++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34689999999999999999999999864
No 109
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.14 E-value=1.5e-10 Score=86.66 Aligned_cols=120 Identities=14% Similarity=0.170 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHH-HHH--cCCCcHHHHHH----HHHcC----CCCCHHHHHHHHH
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-EIK--SGSENGTMIQN----MIKEG----KIVPSEVTIKLLQ 90 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~-~~~--~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~ 90 (215)
++|+|+|+|||||||+|+.|++.+++.+++.|++... .+. ...+..+.... .+... .............
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 4799999999999999999999999999999875311 000 00110000000 00000 0122222333333
Q ss_pred HHHHc-cCCCeEEEeCCCCCHHHHHHHHHhc----CCCCcEEEEEecCH-HHHHHHHhhc
Q 028031 91 KAMEE-SGNDKFLIDGFPRNEENRAAFEAVT----KIEPEFVLFFDCSE-EEMERRILNR 144 (215)
Q Consensus 91 ~~~~~-~~~~~~iidg~~~~~~~~~~~~~~~----~~~~~~~i~L~~~~-e~~~~R~~~r 144 (215)
..+.. ..+..+|++|-. ......+.. . ......++||++|. +++.+|+.+|
T Consensus 82 ~~i~~~~~g~~vIl~gg~--~~~~~~~~~-~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R 138 (253)
T 2ze6_A 82 FEVDWRKSEEGLILEGGS--ISLLNCMAK-SPFWRSGFQWHVKRLRLGDSDAFLTRAKQR 138 (253)
T ss_dssp HHHHTTTTSSEEEEEECC--HHHHHHHHH-CTTTTSSCEEEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEeccH--HHHHHHHHh-cccccccCceEEEEecchhHHHHHHHHHHH
Confidence 33311 126667776532 122233332 2 11112589999997 9999999998
No 110
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.10 E-value=1.2e-09 Score=78.26 Aligned_cols=167 Identities=11% Similarity=0.210 Sum_probs=83.6
Q ss_pred ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhC-CeEeeHHHHHHHHHH---cCC----CcHHHHHHHHHcCCCCCHH-
Q 028031 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIK---SGS----ENGTMIQNMIKEGKIVPSE- 83 (215)
Q Consensus 13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~-~~~i~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~- 83 (215)
..++++.++.+|+|.||+|||||||++.|.+.+. ....+.....|.... .+. ...+.+...+..+.++...
T Consensus 11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~ 90 (197)
T 3ney_A 11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGS 90 (197)
T ss_dssp -----CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhh
Confidence 4456667788999999999999999999998764 111111000000000 000 0112333333333322110
Q ss_pred -------HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHH
Q 028031 84 -------VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETI 156 (215)
Q Consensus 84 -------~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~ 156 (215)
.....++..+.+ +..+++|..+ .....+.. ..+.| ++||+..|.- .| ..+..+.+
T Consensus 91 ~~~n~YGt~~~~v~~~l~~--G~~vildid~---qg~~~~~~-~~~~~-~~Ifi~Pps~-------~~----~~e~~~~i 152 (197)
T 3ney_A 91 YQGNMFGTKFETVHQIHKQ--NKIAILDIEP---QTLKIVRT-AELSP-FIVFIAPTDQ-------GT----QTEALQQL 152 (197)
T ss_dssp ETTEEEEEEHHHHHHHHHT--TCEEEEECCG---GGHHHHCS-TTTCE-EEEEEEECCB-------SS----CCHHHHHH
T ss_pred hhceecccchhhHHHHHhc--CCeEEEEECH---HHHHHHHh-cCCCc-eEEEEeCCCc-------cc----cchHHHHH
Confidence 013345555554 8899999643 33333333 33444 5777775431 11 22223444
Q ss_pred HHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028031 157 RKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK 206 (215)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~ 206 (215)
.+|..... ..+......+++|+ ++++.++++..++.....+
T Consensus 153 ~~r~~~~~-------~~~~~~fd~vivNd--~l~~a~~~l~~ii~~~~~~ 193 (197)
T 3ney_A 153 QKDSEAIR-------SQYAHYFDLSLVNN--GVDETLKKLQEAFDQACSS 193 (197)
T ss_dssp HHHHHHHH-------HHHGGGCSEEEEES--CHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHH-------HhhccCCCEEEECC--CHHHHHHHHHHHHHHccCC
Confidence 44432221 11333334666665 6999999999988655443
No 111
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.04 E-value=1e-09 Score=78.47 Aligned_cols=162 Identities=17% Similarity=0.259 Sum_probs=83.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC--eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHH--HH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA--ME 94 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 94 (215)
.++.+|+|.|+|||||||+++.|+..++. .+++.+++.... ......+...+.. . +.....+.+... ..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~-~-----~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDPWLPQSH-Q-----QNRMIMQIAADVAGRY 79 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCTTSSSHH-H-----HHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccCCccchh-h-----hhHHHHHHHHHHHHHH
Confidence 45789999999999999999999998654 366666654321 1110000000000 0 011112222111 11
Q ss_pred ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC-cHHHHHHHHHHHhhcchhHHHH
Q 028031 95 ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD-NVETIRKRFKVFLESSLPVVQY 173 (215)
Q Consensus 95 ~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 173 (215)
...+..+++|+..... ....+.. .. .+...+++.++.+++..|...| +++.. .++.....+..+ .++..
T Consensus 80 ~~~~~~~~~~~~~~~~-~l~~~~~-~~-~~~~~ls~~~~~~v~~~R~~~r--~~~~lld~~~~~~~~~~~----~~l~~- 149 (191)
T 1zp6_A 80 AKEGYFVILDGVVRPD-WLPAFTA-LA-RPLHYIVLRTTAAEAIERCLDR--GGDSLSDPLVVADLHSQF----ADLGA- 149 (191)
T ss_dssp HHTSCEEEECSCCCTT-TTHHHHT-TC-SCEEEEEEECCHHHHHHHHHTT--CTTSCCCHHHHHHHHHHT----TCCGG-
T ss_pred hccCCeEEEeccCcHH-HHHHHHh-cC-CCeEEEEecCCHHHHHHHHHhc--CCCccCCHHHHHHHHHHH----hccCc-
Confidence 1225667888754321 2223332 12 2235799999999999999987 33221 233222222222 12211
Q ss_pred HHhcCcEEEEcC-CCCHHHHHHHHHHhhC
Q 028031 174 YEAKGKVRKIDA-AKPVAEVFDAVKAVFT 201 (215)
Q Consensus 174 ~~~~~~~~~id~-~~~~~e~~~~i~~~l~ 201 (215)
+ .. +++|+ +.+++++++.|...+.
T Consensus 150 ~---~~-~~i~t~~~~~~~~~~~i~~~l~ 174 (191)
T 1zp6_A 150 F---EH-HVLPVSGKDTDQALQSAINALQ 174 (191)
T ss_dssp G---GG-GEEECTTCCTTTTTTTTHHHHH
T ss_pred c---cc-cEEECCCCCHHHHHHHHHHHHH
Confidence 1 12 34444 4688888888877764
No 112
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=99.03 E-value=1.2e-09 Score=84.41 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=26.6
Q ss_pred CCCCeEEEEEcCCCCChHHHH-HHHHHHhCC
Q 028031 18 VKKPTVVFVLGGPGSGKGTQC-ANIVEHFGY 47 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla-~~La~~~~~ 47 (215)
+.++++|+|.|+.||||||++ +.|++.++.
T Consensus 9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 345789999999999999999 999998863
No 113
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.02 E-value=1.9e-09 Score=88.89 Aligned_cols=163 Identities=14% Similarity=0.108 Sum_probs=69.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC------CeEeeHHHHHHHHHHcCCCcHHH-HHHHHHcCCCCCHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTM-IQNMIKEGKIVPSEVTIKLLQK 91 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~------~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 91 (215)
.++.+|+|+|++||||||+++.|+..++ +.+++.+++.. .+.....+... ...... . ...+.+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~-~l~~~l~f~~~~r~~~~r--------~-i~~v~q 436 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR-HLSSELGFSKAHRDVNVR--------R-IGFVAS 436 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH-HTTSSCCCSHHHHHHHHH--------H-HHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH-hhccccCCCHHHHHHHHH--------H-HHHHHH
Confidence 3578999999999999999999999984 33566655432 21111111110 000000 0 111222
Q ss_pred HHHccCCCeEEEeCCCCCHHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhH
Q 028031 92 AMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV 170 (215)
Q Consensus 92 ~~~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (215)
.+... +..++..+............++ ......+.|||++|.+++.+|..+. ...... ...+..+.....++
T Consensus 437 ~l~~~-~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~---l~~~~~---~~~i~~l~~~r~~~ 509 (552)
T 3cr8_A 437 EITKN-RGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKG---LYAKAR---AGLIPEFTGVSDPY 509 (552)
T ss_dssp HHHHT-TCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------------CCC
T ss_pred HHHhc-CCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcccc---cccccc---HhHHHHHHhccccc
Confidence 22222 4445554421112222222221 1111347999999999999996532 111000 01112222111111
Q ss_pred HHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhC
Q 028031 171 VQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFT 201 (215)
Q Consensus 171 ~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~ 201 (215)
+.....-+++|+ ..++++++++|...+.
T Consensus 510 ---e~P~~adl~Idt~~~s~~e~v~~Il~~L~ 538 (552)
T 3cr8_A 510 ---EVPETPELAIDTTGLAIDEAVQQILLKLE 538 (552)
T ss_dssp ---CCCSSCSEEECCSSCCHHHHHHHHHHHHH
T ss_pred ---cCCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 211112366776 4799999999998875
No 114
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=99.00 E-value=5.3e-10 Score=86.23 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
.+.++|+|+|+.||||||+++.|++.++
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999999999885
No 115
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.98 E-value=1.9e-09 Score=76.45 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
++.+++|.||+||||||+++.|+..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999988763
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.98 E-value=3.3e-08 Score=72.23 Aligned_cols=170 Identities=15% Similarity=0.217 Sum_probs=90.5
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC--eEeeHHHHHHHHH---HcC----CCcHHHHHHHHHcCCCCCH----
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEI---KSG----SENGTMIQNMIKEGKIVPS---- 82 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~--~~i~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~---- 82 (215)
..+.++.+++|.||+|||||||.+.|+..+.. ...+..-.-+... ..+ ......+......+.+...
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 34667889999999999999999999887641 1111100000000 000 0111222222221111000
Q ss_pred ----HHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHH
Q 028031 83 ----EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRK 158 (215)
Q Consensus 83 ----~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~ 158 (215)
....+.+...+.. +..+++| ........+.. .......++++.-+.+.+.+|+..| | .+..+.+.+
T Consensus 91 ~~~yg~~~~~v~~~l~~--G~illLD---LD~~~~~~i~~-~l~~~~tI~i~th~~~~l~~Rl~~r--G--~~~~e~i~~ 160 (219)
T 1s96_A 91 GNYYGTSREAIEQVLAT--GVDVFLD---IDWQGAQQIRQ-KMPHARSIFILPPSKIELDRRLRGR--G--QDSEEVIAK 160 (219)
T ss_dssp TEEEEEEHHHHHHHHTT--TCEEEEE---CCHHHHHHHHH-HCTTCEEEEEECSSHHHHHHHHHTT--S--CSCHHHHHH
T ss_pred hccCCCCHHHHHHHHhc--CCeEEEE---ECHHHHHHHHH-HccCCEEEEEECCCHHHHHHHHHHc--C--CCCHHHHHH
Confidence 0001234444433 7999999 44555555555 3333333555555788899999876 4 466788888
Q ss_pred HHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028031 159 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (215)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~ 202 (215)
|+....... . +......+++| .++++.++++..++..
T Consensus 161 rl~~a~~e~----~-~~~~~d~~i~N--d~l~~a~~~l~~ii~~ 197 (219)
T 1s96_A 161 RMAQAVAEM----S-HYAEYDYLIVN--DDFDTALTDLKTIIRA 197 (219)
T ss_dssp HHHHHHHHH----T-TGGGSSEEEEC--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----h-hccCCCEEEEC--cCHHHHHHHHHHHHHH
Confidence 877543321 1 11223345555 3888899988888753
No 117
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.96 E-value=2.6e-09 Score=77.59 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=73.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHH--HHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR--AEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ 90 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (215)
..++.+|.|.|++||||||+++.|+..+. ..++..++... .......... ....+...........+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~ 93 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLP-----RKGAPETFDFEGFQRLCH 93 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGG-----GTTSGGGBCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccc-----cCCCCchhhHHHHHHHHH
Confidence 45678999999999999999999999875 45666544321 1100000000 000001111222223333
Q ss_pred HHHHc----------------------cC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--c
Q 028031 91 KAMEE----------------------SG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--N 145 (215)
Q Consensus 91 ~~~~~----------------------~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~ 145 (215)
..... .. ...+++||....... ..|.. .....|..|||+++.+++.+|+.+| .
T Consensus 94 ~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de-~~~~~-l~~~~d~~i~vd~~~~~~~~R~~~R~~~ 171 (208)
T 3c8u_A 94 ALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDA-PGWRD-LTAIWDVSIRLEVPMADLEARLVQRWLD 171 (208)
T ss_dssp HHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCS-TTGGG-GGGTCSEEEEECCCHHHHHHHHHHHHHH
T ss_pred HHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCC-chhHH-HHHhcCEEEEEeCCHHHHHHHHHHHHHh
Confidence 22111 01 267889984322211 01222 2334689999999999999999888 2
Q ss_pred CCCCCCcHHHHHHHHH
Q 028031 146 QGREDDNVETIRKRFK 161 (215)
Q Consensus 146 ~~~~~~~~~~~~~~~~ 161 (215)
.+. ..+.+.+++.
T Consensus 172 ~g~---t~~~~~~~~~ 184 (208)
T 3c8u_A 172 HGL---NHDAAVARAQ 184 (208)
T ss_dssp TTC---CHHHHHHHHH
T ss_pred cCC---CHHHHHHHHH
Confidence 333 4556666654
No 118
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.96 E-value=2.1e-10 Score=88.31 Aligned_cols=121 Identities=12% Similarity=0.155 Sum_probs=67.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHHHHHH--HHcCCCcHHHHHHHHHcCCCCCHHHHHHH
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAE--IKSGSENGTMIQNMIKEGKIVPSEVTIKL 88 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (215)
..+|.+|+|.|++||||||+++.|+..++ ..+++.|+++... ....... .............+.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~-----~~~g~P~~~D~~~l~~~ 163 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLM-----KRKGFPESYDMPSLLRV 163 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCG-----GGTTSGGGBCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHH-----hhccCcccccHHHHHHH
Confidence 45788999999999999999999988875 4556776643211 1100000 00000111122222333
Q ss_pred HHHHHHc------------------------cCCCeEEEeCCCCCHHHH-----HHHHHhcCCCCcEEEEEecCHHHHHH
Q 028031 89 LQKAMEE------------------------SGNDKFLIDGFPRNEENR-----AAFEAVTKIEPEFVLFFDCSEEEMER 139 (215)
Q Consensus 89 ~~~~~~~------------------------~~~~~~iidg~~~~~~~~-----~~~~~~~~~~~~~~i~L~~~~e~~~~ 139 (215)
+...... .....+|+||........ ..|.. ....+|..||++++.+++.+
T Consensus 164 L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~-l~~~~D~~I~Vda~~d~~~~ 242 (321)
T 3tqc_A 164 LNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVF-VSDFFDFSLFVDAQAQVIQK 242 (321)
T ss_dssp HHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCC-GGGGCSEEEEEECCHHHHHH
T ss_pred HHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhh-hhhhcCeEEEEECCHHHHHH
Confidence 3222110 125678889843222110 00000 11246899999999999999
Q ss_pred HHhhc
Q 028031 140 RILNR 144 (215)
Q Consensus 140 R~~~r 144 (215)
|+.+|
T Consensus 243 R~i~R 247 (321)
T 3tqc_A 243 WYIDR 247 (321)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99988
No 119
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.96 E-value=1.4e-09 Score=85.06 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
.++++|+|+|+.||||||+++.|++.++
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567899999999999999999999885
No 120
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.95 E-value=1.6e-08 Score=72.79 Aligned_cols=161 Identities=16% Similarity=0.237 Sum_probs=80.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC-----------------------CeEeeHHHHHHHHHHcCCCcHHHHHHHH-H
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----------------------YTHLSAGDLLRAEIKSGSENGTMIQNMI-K 75 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~-----------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~ 75 (215)
++..++|.||+||||||+++.|...+. +..++... ++..+..+.-.. .. -
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~-~~~~i~~~~~l~-----~~~~ 76 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREM-MQRDIAAGDFIE-----HAEF 76 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHH-HHHHHHHTCEEE-----EEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHH-HHHHHHcCCCEe-----eeee
Confidence 456899999999999999999987653 11222211 222111100000 00 0
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHH
Q 028031 76 EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVE 154 (215)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~~~~~~~~~ 154 (215)
.+..+. .....+...+.. +..+++|- .......... ....+. .++|.. +.+.+.+|...| ..+..+
T Consensus 77 ~~n~~g--~~~~~i~~~~~~--~~~~~~~~---~~~g~~~~~~-~~~~~~-~~~l~~p~~~ilde~~~~~----d~~~e~ 143 (198)
T 1lvg_A 77 SGNLYG--TSKEAVRAVQAM--NRICVLDV---DLQGVRSIKK-TDLCPI-YIFVQPPSLDVLEQRLRLR----NTETEE 143 (198)
T ss_dssp TTEEEE--EEHHHHHHHHHT--TCEEEEEC---CHHHHHHHTT-SSCCCE-EEEEECSCHHHHHHHHHHH----TCSCHH
T ss_pred cCccCC--CCHHHHHHHHHc--CCcEEEEC---CHHHHHHHHh-cCCCcE-EEEEeCCCHHHHHHHHHhc----CCCCHH
Confidence 000000 002233333332 45566653 2222232222 334443 355554 577889999877 335567
Q ss_pred HHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
.+.+++......... .. .......++++. +.++.++++.+++...
T Consensus 144 ~i~~~l~~~~~~~~~-a~-~~~~~D~iivnd--~le~a~~~l~~ii~~~ 188 (198)
T 1lvg_A 144 SLAKRLAAARTDMES-SK-EPGLFDLVIIND--DLDKAYATLKQALSEE 188 (198)
T ss_dssp HHHHHHHHHHHHTTG-GG-STTTCSEEEECS--SHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHH-hh-ccCCceEEEECC--CHHHHHHHHHHHHHHH
Confidence 788877665432111 00 112223455543 6899999999888643
No 121
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.94 E-value=1.3e-09 Score=83.93 Aligned_cols=36 Identities=19% Similarity=0.526 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~ 55 (215)
++.+|+|.||+|||||||+..||++++..+|+.|.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 457999999999999999999999999999998765
No 122
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.87 E-value=2e-08 Score=76.14 Aligned_cols=161 Identities=11% Similarity=0.074 Sum_probs=90.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (215)
+.+.+|+|.|.-||||||.++.|.+.++ +.++.. ..+..+... +. .+......
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~----------~~Pt~eE~~------~~--------yl~R~~~~ 139 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL----------TKPTETERG------QW--------YFQRYVAT 139 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC----------CSCCHHHHT------SC--------TTHHHHTT
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe----------CCcChHHHh------ch--------HHHHHHHh
Confidence 4689999999999999999999999995 334432 111111111 00 11111222
Q ss_pred c--CCCeEEEeCCCCCH----------------HHHHHHHHh-----cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC--
Q 028031 96 S--GNDKFLIDGFPRNE----------------ENRAAFEAV-----TKIEPEFVLFFDCSEEEMERRILNR-NQGRE-- 149 (215)
Q Consensus 96 ~--~~~~~iidg~~~~~----------------~~~~~~~~~-----~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~-- 149 (215)
. .|..+|+|++..+. .....+..+ ....|++.+||++|+++..+|+..| .....
T Consensus 140 LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~W 219 (304)
T 3czq_A 140 FPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKIW 219 (304)
T ss_dssp CCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTGG
T ss_pred cccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCccccc
Confidence 2 38999999755331 111121111 2347889999999999999999877 21111
Q ss_pred CCcHHHHH--HHHHHHhhcchhHHHHHH-hcCcEEEEcCCCCH---HHHHHHHHHhhCCC
Q 028031 150 DDNVETIR--KRFKVFLESSLPVVQYYE-AKGKVRKIDAAKPV---AEVFDAVKAVFTPK 203 (215)
Q Consensus 150 ~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~---~e~~~~i~~~l~~~ 203 (215)
.....++. +.+..|......+...-. ...+.++|+++... -.+.+.|...|...
T Consensus 220 k~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l~~~ 279 (304)
T 3czq_A 220 KLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLDYD 279 (304)
T ss_dssp GCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHCCCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHHhhc
Confidence 12333333 223344443333333222 23478999997644 44555555555433
No 123
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.85 E-value=3.6e-08 Score=75.84 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=31.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHH
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDL 55 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~ 55 (215)
..++.+|+|+|++||||||+++.|+..++ ..+++.|+.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 35678999999999999999999999876 556666553
No 124
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.82 E-value=4.5e-07 Score=63.59 Aligned_cols=138 Identities=20% Similarity=0.236 Sum_probs=74.7
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (215)
.-.++.+++|.|++||||||+++.+.. +..+++. +.++..+............. .+.........+.
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~-d~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-- 71 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKKHFK--PTEVISS-DFCRGLMSDDENDQTVTGAA--------FDVLHYIVSKRLQ-- 71 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEH-HHHHHHHCSSTTCGGGHHHH--------HHHHHHHHHHHHH--
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHcc--CCeEEcc-HHHHHHhcCcccchhhHHHH--------HHHHHHHHHHHHh--
Confidence 345678999999999999999998643 4555665 44454433322111000000 0011111222222
Q ss_pred CCCeEEEeCCCCCHHHHH---HHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhH
Q 028031 97 GNDKFLIDGFPRNEENRA---AFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV 170 (215)
Q Consensus 97 ~~~~~iidg~~~~~~~~~---~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (215)
.+...++|.......... .+.......| .+++|+.|...+..|...| .......+.+........+....+
T Consensus 72 ~g~~~~~~~~~~~s~g~~qrv~iAral~~~p-~~lllDEPt~~Ld~~~~~R--~~~~~~~~vi~~~~~~l~~~l~~l 145 (171)
T 4gp7_A 72 LGKLTVVDATNVQESARKPLIEMAKDYHCFP-VAVVFNLPEKVCQERNKNR--TDRQVEEYVIRKHTQQMKKSIKGL 145 (171)
T ss_dssp TTCCEEEESCCCSHHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHTC--SSCCCCHHHHHHHHHHHHHHSTTH
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHHcCCcE-EEEEEeCCHHHHHHHHhcc--cCCCCCHHHHHHHHHHhhhhhhhH
Confidence 266778887554433222 3332133445 4888999999999999888 322344455554444444443333
No 125
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.59 E-value=2.1e-08 Score=77.06 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=32.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~ 55 (215)
++.+|+|+||+||||||++..|+++++..+++.|.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 356899999999999999999999999999998664
No 126
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.55 E-value=2.7e-08 Score=76.91 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~ 55 (215)
+.+|+|+||+||||||+|..|++.++..+++.|++
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 46899999999999999999999999999998876
No 127
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.49 E-value=8.3e-08 Score=73.05 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~ 54 (215)
.++.+|+|+||+|||||||+..|++.++..+++.|.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 457799999999999999999999999988888755
No 128
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.48 E-value=3.4e-07 Score=74.37 Aligned_cols=104 Identities=15% Similarity=0.227 Sum_probs=61.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (215)
+.+.+|+|.|..||||+|.++.|.+.++ +.++.. ..+...... ..+ +.....+ + -
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~----------~~Pt~~E~~------~~y----l~R~~~~-l-P 98 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSF----------LRPSDEELE------RPP----QWRFWRR-L-P 98 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC----------SSCCHHHHT------SCT----THHHHHH-C-C
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEe----------CCCChhhcc------CCh----hhhHHHh-C-C
Confidence 5789999999999999999999999996 333332 111111110 000 0111221 1 1
Q ss_pred cCCCeEEEeCCCCC------------HH-------HHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028031 96 SGNDKFLIDGFPRN------------EE-------NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (215)
Q Consensus 96 ~~~~~~iidg~~~~------------~~-------~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r 144 (215)
..|..+|+|++..+ .. ++..|... ....+++.+||++|+++..+|+..|
T Consensus 99 ~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R 168 (500)
T 3czp_A 99 PKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKAL 168 (500)
T ss_dssp CTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC---
T ss_pred CCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHH
Confidence 13888999964322 11 11111110 5567889999999999999999988
No 129
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.47 E-value=6.5e-08 Score=73.75 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=32.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~ 55 (215)
++.+|+|.||+||||||++..|++.++..+++.|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 456899999999999999999999999888887664
No 130
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=98.47 E-value=1.9e-07 Score=71.25 Aligned_cols=163 Identities=16% Similarity=0.205 Sum_probs=90.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC-CeEeeHHHHHHHHHHc---CC----C-cHHHHHHHHHcCCCCCHH-----
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKS---GS----E-NGTMIQNMIKEGKIVPSE----- 83 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-~~~i~~~~~~~~~~~~---~~----~-~~~~~~~~~~~~~~~~~~----- 83 (215)
+..+..|+|+|| ||+|+.+.|.+.+. ...++.....|..... +. - ..+.+...+..+.++...
T Consensus 102 ~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~ 178 (295)
T 1kjw_A 102 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSH 178 (295)
T ss_dssp CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCc
Confidence 345677889998 79999999988763 1112211112211110 11 1 345555666665554321
Q ss_pred ---HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecC-HHHHHHHHhhccCCCCCCcHHHHHHH
Q 028031 84 ---VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKR 159 (215)
Q Consensus 84 ---~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~-~e~~~~R~~~r~~~~~~~~~~~~~~~ 159 (215)
...+.++..+.+ |..+|+|..+ .....+.. ....| ++||+..| .+++.+ +.+| +. .+.+.+|
T Consensus 179 ~YGt~~~~V~~~~~~--G~~vildid~---~g~~~l~~-~~~~p-i~IfI~pps~~~L~~-L~~R--~t----~~~i~~r 244 (295)
T 1kjw_A 179 LYGTSVQSVREVAEQ--GKHCILDVSA---NAVRRLQA-AHLHP-IAIFIRPRSLENVLE-INKR--IT----EEQARKA 244 (295)
T ss_dssp EEEEEHHHHHHHHHT--TCEEEECCCT---THHHHHHH-TTCCC-EEEEECCSSHHHHHH-HCTT--SC----HHHHHHH
T ss_pred EeeeeHHHHHHHHhc--CCeEEEEeCH---HHHHHHHh-cccCC-eEEEEECCCHHHHHH-HHhc--CC----HHHHHHH
Confidence 114445565554 8899999643 23334443 44556 78888876 555555 7666 32 2456667
Q ss_pred HHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 160 FKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
+...... ...+......+++ ++ ++++.++++..+|...
T Consensus 245 l~~a~~~----e~~~~~~fd~viv-Nd-~le~a~~~l~~ii~~~ 282 (295)
T 1kjw_A 245 FDRATKL----EQEFTECFSAIVE-GD-SFEEIYHKVKRVIEDL 282 (295)
T ss_dssp HHHHHHH----HHHHGGGCSEEEC-CS-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHhccccCeEEEE-Cc-CHHHHHHHHHHHHHhc
Confidence 6655321 1112222334444 43 8999999999888643
No 131
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.47 E-value=1.2e-05 Score=58.61 Aligned_cols=172 Identities=19% Similarity=0.246 Sum_probs=80.1
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhC-CeEeeHHHHHHHH---HHcC----CCcHHHHHHHHHcCCCC------
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAE---IKSG----SENGTMIQNMIKEGKIV------ 80 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~-~~~i~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~------ 80 (215)
++...++.+++|.||+||||||+++.|+..+. -..+..+...+.. ...+ ......+......+..+
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYA 96 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcc
Confidence 44556678999999999999999999988662 1111100000000 0000 00111111111100000
Q ss_pred CH--HHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCc-EEEEEe-cCHHHHHHHHhhccCCCCCCcHHHH
Q 028031 81 PS--EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFD-CSEEEMERRILNRNQGREDDNVETI 156 (215)
Q Consensus 81 ~~--~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~-~~i~L~-~~~e~~~~R~~~r~~~~~~~~~~~~ 156 (215)
.. ......+++.+.. ...+++|. .......... ....++ ..+++. .+...+.+|+..+ ..+..+.+
T Consensus 97 ~~~~g~~~~~i~~~l~~--~~~~il~~---~lsggq~qR~-~i~~~~~~~~ll~~~~~~~Lde~~~~~----d~~~~~~i 166 (218)
T 1z6g_A 97 NNFYGTLKSEYDKAKEQ--NKICLFEM---NINGVKQLKK-STHIKNALYIFIKPPSTDVLLSRLLTR----NTENQEQI 166 (218)
T ss_dssp TEEEEEEHHHHHHHHHT--TCEEEEEE---CHHHHHHHTT-CSSCCSCEEEEEECSCHHHHHHHHHHT----CCCCHHHH
T ss_pred cccCCCcHHHHHHHHhC--CCcEEEEe---cHHHHHHHHH-HhcCCCcEEEEEeCcCHHHHHHHHHhc----CCCCHHHH
Confidence 00 0001123333333 45566662 2222222221 120122 456665 6778899999877 33456677
Q ss_pred HHHHHHHhhcchhHHHHHH--hcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028031 157 RKRFKVFLESSLPVVQYYE--AKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (215)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~--~~~~~~~id~~~~~~e~~~~i~~~l~~~ 203 (215)
.+++........ +. .....++++. +.++.+..+...+...
T Consensus 167 ~~~l~~~~~~~~-----~~h~~~~d~iiv~~--~~~ea~~~~~~ii~~~ 208 (218)
T 1z6g_A 167 QKRMEQLNIELH-----EANLLNFNLSIIND--DLTLTYQQLKNYLLNS 208 (218)
T ss_dssp HHHHHHHHHHHH-----HHTTSCCSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----hhcccCCCEEEECC--CHHHHHHHHHHHHHHH
Confidence 777765543221 11 2223444443 6888888888777643
No 132
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.42 E-value=8.4e-07 Score=72.10 Aligned_cols=159 Identities=10% Similarity=0.118 Sum_probs=86.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (215)
+.+.+|+|.|..||||+|.++.|.+.++ +.++.. ..+..... +.. .+......
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~----------~~Pt~~E~------~~~--------yl~R~~~~ 353 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPI----------AAPTEEER------AQP--------YLWRFWRH 353 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEEC----------CSCCHHHH------TSC--------TTHHHHTT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEe----------CCCChhhh------cch--------HHHHHHHh
Confidence 4688999999999999999999999995 444432 11111111 000 11112222
Q ss_pred c--CCCeEEEeCCCCCH------------H-HHHHHHHh--------cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC--
Q 028031 96 S--GNDKFLIDGFPRNE------------E-NRAAFEAV--------TKIEPEFVLFFDCSEEEMERRILNR-NQGRE-- 149 (215)
Q Consensus 96 ~--~~~~~iidg~~~~~------------~-~~~~~~~~--------~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~-- 149 (215)
. .|..+|+|++..+. . +...+.++ ....+.+.+||.+|+++..+|+..| ..+..
T Consensus 354 lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~W 433 (500)
T 3czp_A 354 IPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKRY 433 (500)
T ss_dssp CCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTTS
T ss_pred CCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCcccC
Confidence 2 28999999755331 1 11111111 3456789999999999999999998 21111
Q ss_pred CCcHHHHH--HHHHHHhhcchhHHHHHHh-cCcEEEEcCCC---CHHHHHHHHHHhhC
Q 028031 150 DDNVETIR--KRFKVFLESSLPVVQYYEA-KGKVRKIDAAK---PVAEVFDAVKAVFT 201 (215)
Q Consensus 150 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~id~~~---~~~e~~~~i~~~l~ 201 (215)
..++.++. +++..|.......+..-.. ..+.++|+++. ..-.+.+.|...|.
T Consensus 434 k~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~ 491 (500)
T 3czp_A 434 KITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIE 491 (500)
T ss_dssp CCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHH
Confidence 01111111 2223344433333332222 23688999875 23444455544443
No 133
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=98.32 E-value=7.4e-07 Score=67.68 Aligned_cols=165 Identities=10% Similarity=0.141 Sum_probs=91.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHc---CC-----CcHHHHHHHHHcCCCCCHHH----
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GS-----ENGTMIQNMIKEGKIVPSEV---- 84 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~---- 84 (215)
+..+..|+|+|| ||+|+.+.|.+.+.- ..++.....|..... |. ...+.+...+.++.++....
T Consensus 97 ~~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn 173 (292)
T 3tvt_A 97 INYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDN 173 (292)
T ss_dssp CSSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccc
Confidence 345566888888 599999999988742 222211111111000 00 12234444555544432111
Q ss_pred ----HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHHHHHHH
Q 028031 85 ----TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKR 159 (215)
Q Consensus 85 ----~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~~~~~~~~~~~~~~ 159 (215)
..+.++..+.+ |..+|+|-- ......+.. ....| ++||+.. +.+++.+|+.+| ..+..+.+..|
T Consensus 174 ~YGT~~~~V~~~~~~--gk~viLdid---~qg~~~lk~-~~~~p-i~IFI~PpS~e~L~~r~~~r----~~e~~~~~~~r 242 (292)
T 3tvt_A 174 LYGTSVASVREVAEK--GKHCILDVS---GNAIKRLQV-AQLYP-VAVFIKPKSVDSVMEMNRRM----TEEQAKKTYER 242 (292)
T ss_dssp EEEEEHHHHHHHHHH--TCEEEECCC---THHHHHHHH-TTCCC-EEEEECCSCHHHHHHTCTTS----CTTHHHHHHHH
T ss_pred eeEEehHHHHHHHHc--CCcEEEecc---chhhhhccc-ccccc-eEEEEECCCHHHHHHHHhCC----CchhHHHHHHH
Confidence 14556666654 889999943 344555565 66666 5777776 456677766544 44555566655
Q ss_pred HHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028031 160 FKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (215)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~ 205 (215)
...... .+......+++|+ ++++.++++..+|.....
T Consensus 243 ~~k~e~-------e~~~~fD~vIvNd--dle~a~~~l~~iI~~e~~ 279 (292)
T 3tvt_A 243 AIKMEQ-------EFGEYFTGVVQGD--TIEEIYSKVKSMIWSQSG 279 (292)
T ss_dssp HHHHHH-------HHTTTCSEEECCS--SHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH-------hhhhhCCEEEECc--CHHHHHHHHHHHHHHhhC
Confidence 543322 1233233455543 789999999888865433
No 134
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.30 E-value=6.4e-07 Score=66.17 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK 61 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~ 61 (215)
++|.|+|++||||||+++.|++++|+.++..++.++..+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 5899999999999999999999999999998877766543
No 135
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.26 E-value=5.3e-07 Score=71.12 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~ 54 (215)
+.+|+|.||+|||||||+..|++.++..+++.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 4589999999999999999999999998898766
No 136
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=98.24 E-value=1.9e-05 Score=59.14 Aligned_cols=161 Identities=10% Similarity=0.086 Sum_probs=88.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (215)
..+.+|++.|..||||++.++.|.+.++ +.++.. ..+..+. .....+.+....
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~----------~~Pt~eE--------------~~~~ylwR~~~~ 128 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAF----------KAPTDEE--------------KSHDFLWRIEKQ 128 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC----------CSCCHHH--------------HTSCTTHHHHTT
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEEC----------CCCChhh--------------hcCCHHHHHHHh
Confidence 3578999999999999999999999996 444432 1111110 001111222222
Q ss_pred cC--CCeEEEeCCCCCH-------------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCC--C
Q 028031 96 SG--NDKFLIDGFPRNE-------------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGR--E 149 (215)
Q Consensus 96 ~~--~~~~iidg~~~~~-------------------~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~--~ 149 (215)
.+ |..+|+|++..+. .++..|... ......+.+||.+|.++..+|+.+| ..+. -
T Consensus 129 lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~W 208 (289)
T 3rhf_A 129 VPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHW 208 (289)
T ss_dssp CCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGG
T ss_pred CCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcccc
Confidence 22 8999999754331 111222221 3344556899999999999999988 2111 1
Q ss_pred CCcHHHHHH--HHHHHhhcchhHHHHHHh-cCcEEEEcCCCCHHH---HHHHHHHhhCCC
Q 028031 150 DDNVETIRK--RFKVFLESSLPVVQYYEA-KGKVRKIDAAKPVAE---VFDAVKAVFTPK 203 (215)
Q Consensus 150 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~e---~~~~i~~~l~~~ 203 (215)
..++.++.+ ++..|......++..-+. ..+.++|+++.-.-. +.+.|...|...
T Consensus 209 K~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le~~ 268 (289)
T 3rhf_A 209 KYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALGGL 268 (289)
T ss_dssp GCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHHc
Confidence 122333333 334555544444332222 246889988643322 334444444443
No 137
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.20 E-value=1.8e-05 Score=67.64 Aligned_cols=165 Identities=15% Similarity=0.201 Sum_probs=94.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-CeEeeHHHHHHHHHHc---CC----C-cHHHHHHHHHcCCCCCHH------
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKS---GS----E-NGTMIQNMIKEGKIVPSE------ 83 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~-~~~i~~~~~~~~~~~~---~~----~-~~~~~~~~~~~~~~~~~~------ 83 (215)
..+..|+|.|| ||+|+.++|.+.+. ...++.....|..... +. - ..+.+...+..+.++...
T Consensus 529 ~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~ 605 (721)
T 2xkx_A 529 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHL 605 (721)
T ss_pred CCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCcc
Confidence 45678899999 49999999988774 2223333333432111 11 1 345566666666654321
Q ss_pred --HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH-HHHHHHHhhccCCCCCCcHHHHHHHH
Q 028031 84 --VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQGREDDNVETIRKRF 160 (215)
Q Consensus 84 --~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~-e~~~~R~~~r~~~~~~~~~~~~~~~~ 160 (215)
.-.+.++..+.+ ++.+|+|.. ......+.. ....| ++||+..+. +++.+ +.+| +. .+.+.+|+
T Consensus 606 YGt~~~~v~~~~~~--g~~~ildi~---~~~~~~l~~-~~~~p-~~ifi~pps~~~L~~-l~~R--~t----~~~~~~rl 671 (721)
T 2xkx_A 606 YGTSVQSVREVAEQ--GKHCILDVS---ANAVRRLQA-AHLHP-IAIFIRPRSLENVLE-INKR--IT----EEQARKAF 671 (721)
T ss_pred ceeeHHHHHHHHHC--CCcEEEeCC---HHHHHHHHh-cccCC-EEEEEeCCcHHHHHH-Hhcc--CC----HHHHHHHH
Confidence 124556666654 889999953 333334443 34455 788998764 55555 7766 32 24566666
Q ss_pred HHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028031 161 KVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK 206 (215)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~ 206 (215)
...... ...+.....++++| + ++++.++++..+|.....+
T Consensus 672 ~~a~~~----e~~~~~~fd~vi~N-d-~l~~a~~~l~~~i~~~~~~ 711 (721)
T 2xkx_A 672 DRATKL----EQEFTECFSAIVEG-D-SFEEIYHKVKRVIEDLSGP 711 (721)
T ss_pred HHHHHH----HHhccccCcEEEEC-c-CHHHHHHHHHHHHHhccCC
Confidence 654321 11122222344444 3 8999999999998765443
No 138
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.19 E-value=1.3e-06 Score=66.62 Aligned_cols=37 Identities=38% Similarity=0.722 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCe--EeeHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDL 55 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~--~i~~~~~ 55 (215)
..|..++|.||||+|||++|+.+|+.++.. .++.+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l 72 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence 456788999999999999999999999854 4455454
No 139
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.17 E-value=2.4e-06 Score=60.26 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=31.9
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh----C--CeEeeHHHHHHH
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRA 58 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~----~--~~~i~~~~~~~~ 58 (215)
...++..++|.||+||||||+++.++..+ | ..+++..++...
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 33456789999999999999999998877 3 355666665443
No 140
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.16 E-value=1.6e-06 Score=66.01 Aligned_cols=40 Identities=30% Similarity=0.383 Sum_probs=32.2
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CeEe-eHHHHH
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHL-SAGDLL 56 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i-~~~~~~ 56 (215)
...++.+|+|.|++||||||+++.|++.++ ...+ +.|+++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 356789999999999999999999998885 3445 776654
No 141
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.14 E-value=1.1e-06 Score=71.65 Aligned_cols=35 Identities=3% Similarity=0.009 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC-------eEeeHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-------THLSAGD 54 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~-------~~i~~~~ 54 (215)
++++|+|+|++||||||+++.|+++++. .+++.|+
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5689999999999999999999999986 5666544
No 142
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=98.10 E-value=1.9e-06 Score=61.31 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG 53 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~ 53 (215)
....|+|.|++||||||+|..|+++.+ .+++.|
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 467899999999999999999999876 666553
No 143
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=3.8e-06 Score=67.09 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=29.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
...|.-|++.||||+|||++|+++|..++..++.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~ 236 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR 236 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence 3456679999999999999999999999976665
No 144
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=3.8e-06 Score=67.19 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=29.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
...|.-|++.||||+|||++|+++|.+++..++.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 3457789999999999999999999999976655
No 145
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.04 E-value=2.8e-06 Score=59.94 Aligned_cols=26 Identities=38% Similarity=0.650 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
+.++|.|++||||||+++.|+..++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999998863
No 146
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=4.4e-06 Score=66.86 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=30.0
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
....|.-|++.||||+|||++|+++|..++..++.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~ 245 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 34456789999999999999999999999976665
No 147
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=4.3e-06 Score=66.06 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=29.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
...|.-|++.||||+|||++|+++|...+..++.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 3456679999999999999999999999977665
No 148
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.00 E-value=6.6e-06 Score=61.38 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
..+.-++|.|+||+||||+|+.+++.++..++
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 44567999999999999999999999986554
No 149
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.99 E-value=7.1e-06 Score=61.21 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
+.-++|.|+||+||||+++.++..++..++.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 75 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT 75 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEE
Confidence 4569999999999999999999999854443
No 150
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.99 E-value=6.2e-06 Score=62.24 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=24.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028031 24 VFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 24 I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
++|.|||||||||+++.++..++...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 999999999999999999999875444
No 151
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.97 E-value=7e-06 Score=62.13 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
..+..++|.||||+||||+|+.+++.++..++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 345679999999999999999999999865544
No 152
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=6.2e-06 Score=66.13 Aligned_cols=36 Identities=19% Similarity=0.424 Sum_probs=30.7
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
+....|.-|++.||||+|||++|+++|.+++..++.
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence 334567789999999999999999999999976665
No 153
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.97 E-value=7.2e-06 Score=62.76 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEe--eHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRA 58 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i--~~~~~~~~ 58 (215)
..+..|+|.||||+||||+|+.++..++..++ +..++...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 45667999999999999999999999986544 45555443
No 154
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.97 E-value=6.5e-06 Score=63.27 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..++.+|+|.|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4678899999999999999999998876
No 155
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.96 E-value=5.3e-06 Score=59.92 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=24.5
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
..-.++.+++|.||+||||||+++.|+..+.
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3445678999999999999999999988763
No 156
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.95 E-value=8.2e-06 Score=62.17 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
.+..++|.||||+||||+|+.+++.++..++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 3567999999999999999999999986554
No 157
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=9.5e-06 Score=64.48 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=30.1
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
....|.-|++.||||+|||++|+++|..++..++.
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~ 246 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR 246 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence 33456789999999999999999999999977665
No 158
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.93 E-value=1.9e-06 Score=66.86 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=29.7
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeE
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~ 49 (215)
.+.++....|+|.|+|||||||+++.|++.+++.+
T Consensus 18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 18 RIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp TTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34455567799999999999999999999998766
No 159
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.92 E-value=1e-05 Score=60.88 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=28.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
...+..++|.|+||+|||++|+.+++..+..++.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~ 94 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIK 94 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 3456789999999999999999999999866543
No 160
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.90 E-value=8.2e-06 Score=58.40 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
...++|.||||+||||+|..|++.++..++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 457999999999999999999999875544
No 161
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.89 E-value=1.1e-05 Score=63.63 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=29.9
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
.-.++.+|+|.|||||||||+++.|+..++..++.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 44567799999999999999999999998876655
No 162
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.89 E-value=2e-05 Score=56.42 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHHHHH
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE 59 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~~~~ 59 (215)
..++|.|+||+||||+++.++..+ + +.+++..++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL 97 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH
Confidence 679999999999999999999887 2 3446666655443
No 163
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.88 E-value=9.8e-06 Score=56.44 Aligned_cols=25 Identities=32% Similarity=0.166 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.++|.|.|++||||||++..|+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999876
No 164
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.88 E-value=6.6e-06 Score=65.97 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~ 52 (215)
.+.-|++.||||+||||+|+.||+.++..++..
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v 81 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceee
Confidence 345699999999999999999999998766654
No 165
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.88 E-value=1.4e-05 Score=61.74 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
+.-++|.||||+|||++|+.+++.++..++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 81 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFS 81 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEE
Confidence 5679999999999999999999999865543
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.87 E-value=1.1e-05 Score=56.91 Aligned_cols=27 Identities=19% Similarity=0.450 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+..++|.|+||+||||+++.+++.+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 456678999999999999999999987
No 167
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.87 E-value=1e-05 Score=55.84 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=26.0
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-....++.|.|+.||||||+++.|+..+
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 334567799999999999999999998877
No 168
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.86 E-value=9.9e-06 Score=62.92 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
+..++|.||||+||||+++.++..++..
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4679999999999999999999999753
No 169
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.85 E-value=1.3e-05 Score=62.99 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
.+.-|+|.||||+|||++|+.+++.++..++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~ 81 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTM 81 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 34568999999999999999999999865554
No 170
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.85 E-value=1.2e-05 Score=56.46 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+..++|.|+||+||||+++.+++.+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 446678999999999999999999987
No 171
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.84 E-value=1.4e-05 Score=59.42 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeE
Q 028031 23 VVFVLGGPGSGKGTQCANIVEHFGYTH 49 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~ 49 (215)
-++|.|||||||||+++.++..++...
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~ 77 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPF 77 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 399999999999999999999886433
No 172
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=97.84 E-value=0.00056 Score=52.07 Aligned_cols=149 Identities=11% Similarity=0.141 Sum_probs=79.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (215)
+..+.-|+|+|| ||+|+.+.|.+.+.- ..++.. +-+ .+.++.+++ ...++..+.+
T Consensus 142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~-~~r---------------~i~~~~fis----~~~V~~vl~~- 197 (308)
T 3kfv_A 142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAET-VSR---------------TDSPSKIIK----LDTVRVIAEK- 197 (308)
T ss_dssp CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCC-C-----------------------CCC----HHHHHHHHHT-
T ss_pred cCCCCeEEEeCc---cHHHHHHHHHHhCccccccccc-ccc---------------cccCCCeec----HHHHHHHHHC-
Confidence 344555889999 799999999887742 112110 000 023445553 4455555554
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028031 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (215)
Q Consensus 97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (215)
|..+|+| ........+.. ....| ++||+.. +.+++.+| .+|.+....+.. .+++....+ +...|.
T Consensus 198 -Gk~~ILD---Id~QGa~~lk~-~~~~p-i~IFI~PPS~eeL~~r-r~R~~~esee~~---~r~~~aa~e----iE~~~~ 263 (308)
T 3kfv_A 198 -DKHALLD---VTPSAIERLNY-VQYYP-IVVFFIPESRPALKAL-RQWLAPASRRST---RRLYAQAQK----LRKHSS 263 (308)
T ss_dssp -TCEEEEC---CCHHHHHHHHH-TTCCC-EEEEEEESCHHHHHHH-HHHHSTTCCCCH---HHHHHHHHH----HHHHHG
T ss_pred -CCcEEEE---ECHHHHHHHHh-cCCCC-EEEEEeCCCHHHHHHH-HhcCCCCCHHHH---HHHHHHHHH----HHHhhh
Confidence 8999999 44555566666 66667 5666666 55667765 444111122222 222222211 111233
Q ss_pred hcCcEEE-EcCCCCHHHHHHHHHHhhCCCccc
Q 028031 176 AKGKVRK-IDAAKPVAEVFDAVKAVFTPKDEK 206 (215)
Q Consensus 176 ~~~~~~~-id~~~~~~e~~~~i~~~l~~~~~~ 206 (215)
.....++ +|+ ++++.++++..+|.....+
T Consensus 264 ~~FD~vI~VND--dle~A~~~L~~iI~~~~~e 293 (308)
T 3kfv_A 264 HLFTATIPLNG--TSDTWYQELKAIIREQQTR 293 (308)
T ss_dssp GGCSEEEEECS--SSTHHHHHHHHHHHHHTTS
T ss_pred ccCcEEEEcCC--CHHHHHHHHHHHHHHhcCC
Confidence 3333555 664 5677888888877655444
No 173
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.83 E-value=1.7e-05 Score=61.23 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-CCeEe
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHL 50 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~-~~~~i 50 (215)
.+.-|+|.||||+|||++|+.+++.+ +..++
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 34679999999999999999999998 54443
No 174
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.83 E-value=1.4e-05 Score=61.14 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+..++|.|+||+|||++|+.+++.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345569999999999999999999988
No 175
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.81 E-value=1.6e-05 Score=55.70 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..+++|.|++||||||+++.|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998875
No 176
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.81 E-value=1.6e-05 Score=60.70 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
.+.-++|.|+||+|||++|+.+++.++..++
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3557899999999999999999999985443
No 177
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.80 E-value=1.4e-05 Score=54.61 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
....++|.|++||||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56689999999999999999999877
No 178
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.79 E-value=2.1e-05 Score=61.62 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
+.-|+|.||||+|||++|+.+++.++..++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 114 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFS 114 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 4568999999999999999999999865543
No 179
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.78 E-value=3.3e-05 Score=59.63 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLR 57 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~~ 57 (215)
.+..++|.|+||+||||+++.+++.+ + +.+++..++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~ 78 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 78 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence 34579999999999999999999987 4 56677766543
No 180
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.78 E-value=2.2e-05 Score=60.08 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=26.3
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+...++.+++|.|++||||||+++.|+..+
T Consensus 95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345578899999999999999999999876
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.78 E-value=1.8e-05 Score=57.97 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGD 54 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~ 54 (215)
.+..++|.|+||+||||+++.+++.++ +.+++.++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 467899999999999999999998874 34555544
No 182
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.77 E-value=2.3e-05 Score=60.01 Aligned_cols=29 Identities=34% Similarity=0.714 Sum_probs=25.7
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
...++.+|+|.|++||||||++..|+..+
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34568899999999999999999999877
No 183
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.77 E-value=2.3e-05 Score=61.40 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=27.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
..+.-|+|.|+||+|||++|+.+++.++..++
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 34667999999999999999999999986554
No 184
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.76 E-value=2.4e-05 Score=59.06 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=23.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028031 24 VFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 24 I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
++|.|||||||||+++.++..++...+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i 102 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFI 102 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEE
Confidence 999999999999999999998864333
No 185
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.75 E-value=2.3e-05 Score=60.02 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.+|+|.|++||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999999776
No 186
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.75 E-value=2.7e-05 Score=66.85 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=32.0
Q ss_pred ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
+..+....|.-|++.||||+|||++|+++|..++..++.
T Consensus 230 f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~ 268 (806)
T 3cf2_A 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp GTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEE
T ss_pred HhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 344444567889999999999999999999999976654
No 187
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.74 E-value=2.4e-05 Score=61.73 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
+..++|.|+||+||||+|+.+++.++..++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4468999999999999999999999865543
No 188
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=2.6e-05 Score=64.20 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
.+..++|.||||+||||+|+.+++.+++.++.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 34689999999999999999999999976664
No 189
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.73 E-value=1.5e-05 Score=55.95 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCC
Q 028031 23 VVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
+|+|+|++||||||+|..|+.. +.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~ 24 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-AP 24 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CS
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CC
Confidence 3799999999999999999987 64
No 190
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.72 E-value=2.9e-05 Score=60.07 Aligned_cols=28 Identities=36% Similarity=0.570 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..++.+|+|.|++||||||+++.|+..+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998876
No 191
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.72 E-value=3.1e-05 Score=60.58 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=26.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+...++.+|+|.|++||||||+++.|+..+
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 345678899999999999999999999876
No 192
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.72 E-value=9.4e-06 Score=60.89 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
+.-++|.|+||+|||++|+.+++.++..++.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 3348899999999999999999999865443
No 193
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.72 E-value=2.9e-05 Score=60.20 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
+..++|.|+||+|||++|+.+++.++..++.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~ 85 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKT 85 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 4468999999999999999999999865443
No 194
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.71 E-value=1.4e-05 Score=58.86 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=25.9
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-+++|.||+||||||+.+.|+--+
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3445677899999999999999999997654
No 195
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.69 E-value=2.5e-05 Score=59.66 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=27.8
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeE
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~ 49 (215)
+.-.+..+++|.||+|||||||++.|+.-+.-.+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 4445678999999999999999999988774333
No 196
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.67 E-value=4.1e-05 Score=62.12 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
|.-|+|.||||+||||+++.++...+..++.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~ 79 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFH 79 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 4459999999999999999999999865543
No 197
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.67 E-value=2.6e-05 Score=57.64 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La 42 (215)
.+..+++|.||+||||||+++.++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 357899999999999999999987
No 198
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.67 E-value=3.7e-05 Score=57.58 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+.-+++|.||+||||||+.+.|+..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 4566789999999999999999998765
No 199
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.67 E-value=3.8e-05 Score=62.16 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC--CeEee
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLS 51 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~--~~~i~ 51 (215)
+.-+++.||||+|||++|+.+++.++ ..++.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~ 95 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCP 95 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEE
Confidence 45699999999999999999999998 44443
No 200
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.66 E-value=4e-05 Score=62.14 Aligned_cols=30 Identities=33% Similarity=0.567 Sum_probs=26.5
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+...++.+|+|.|++||||||+++.|+..+
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 445678999999999999999999998876
No 201
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.66 E-value=3.3e-05 Score=56.49 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
+..++|.|++|+||||+++.+++.++
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999999885
No 202
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.64 E-value=3.1e-05 Score=56.46 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..++.|.|++||||||+++.|+-.+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998743
No 203
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.64 E-value=3.2e-05 Score=54.98 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+++|.|++||||||+++.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998876
No 204
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.64 E-value=5.1e-05 Score=60.16 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
+.-++|.|+||+|||++|+.+++.++..++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence 5679999999999999999999999876554
No 205
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.63 E-value=0.0003 Score=56.77 Aligned_cols=151 Identities=9% Similarity=0.088 Sum_probs=78.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
+..+..|+|.||+|+| |.++|.+.+.-.+.+. ..| ...+...+. +..+. -...++..+.+
T Consensus 221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~--~TR--pR~gE~dG~-------~Y~FT----s~~~V~~vl~~-- 280 (468)
T 3shw_A 221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQIA--KSE--PRDAGTDQR-------SSGII----RLHTIKQIIDQ-- 280 (468)
T ss_dssp CSSCCCEEEESTTHHH---HHHHHHHHCTTTEEEC--CCB--C-----------------CBC----CHHHHHHHHTT--
T ss_pred CCCCCEEEEECCCHHH---HHHHHHHhCCCceeee--cCC--CCCcccccc-------cCCcc----cHHHHHHHHHC--
Confidence 4567789999999999 8888877764322322 112 011111110 11222 24556666554
Q ss_pred CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecC-HHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028031 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (215)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~-~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (215)
|+.+|+| ....-...+.. ....| ++||+..| .+++.+ +.+|......+ .+.+++....+ +...|..
T Consensus 281 Gk~~iLd---Id~qg~~~l~~-~~~~p-~~IFI~PPS~e~L~~-~~~rl~~~see---~~~r~~~~a~~----~e~~~~~ 347 (468)
T 3shw_A 281 DKHALLD---VTPNAVDRLNY-AQWYP-IVVFLNPDSKQGVKT-MRMRLCPESRK---SARKLYERSHK----LRKNNHH 347 (468)
T ss_dssp TCEEEEC---CCHHHHHHHHH-TTCCC-EEEEEECSCHHHHHH-HHHHHCTTCCC---CHHHHHHHHHH----HHHHHGG
T ss_pred CCeEEEE---eCHHHHHHHHh-cCCCC-EEEEEeCcCHHHHHH-HHhccCCCCHH---HHHHHHHHHHH----HHHhhhc
Confidence 8999999 44555566666 66667 57777775 455554 33331111222 33333333211 1222333
Q ss_pred cCcEEEEcCCCCH-HHHHHHHHHhhCCC
Q 028031 177 KGKVRKIDAAKPV-AEVFDAVKAVFTPK 203 (215)
Q Consensus 177 ~~~~~~id~~~~~-~e~~~~i~~~l~~~ 203 (215)
....+++|+ +. ++.++++..+|...
T Consensus 348 ~fD~vIvNd--dl~d~a~~~L~~ii~~~ 373 (468)
T 3shw_A 348 LFTTTINLN--SMNDGWYGALKEAIQQQ 373 (468)
T ss_dssp GCSEEEECB--TTBCHHHHHHHHHHHHH
T ss_pred cCCEEEECC--CcHHHHHHHHHHHHHHh
Confidence 334566654 34 36777776666543
No 206
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.63 E-value=1.7e-05 Score=57.96 Aligned_cols=30 Identities=33% Similarity=0.326 Sum_probs=24.7
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-...-+++|.|++|||||||.+.|+--+
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 333467789999999999999999997654
No 207
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.63 E-value=4e-05 Score=54.28 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=26.1
Q ss_pred CCccccccccccccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 1 ~~~~~~~p~~~~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
||.-...|.......-.......|+|.|.+|||||||...|...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 1 MGSSHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp ---------CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CCccccccccccccccccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 44444333333333334455678999999999999999999753
No 208
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.62 E-value=2.4e-05 Score=57.76 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=25.2
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+..+++|.|++|||||||.+.|+..+
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444567899999999999999999997654
No 209
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.62 E-value=3.5e-05 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.-|+|.|+||+|||++|+.+++..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999998865
No 210
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.60 E-value=4.5e-05 Score=59.95 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
...+..++|.||||+||||+++.+++.+
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999987
No 211
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.60 E-value=3.5e-05 Score=55.60 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..++|.|++|+||||+++.+++.+
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3349999999999999999999876
No 212
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.60 E-value=5.7e-05 Score=60.95 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-CCeE--eeHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTH--LSAGDLL 56 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~-~~~~--i~~~~~~ 56 (215)
.+.-|+|.||||+|||++|+.++..+ +..+ ++..++.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 34679999999999999999999998 5444 4444443
No 213
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.60 E-value=3e-05 Score=57.28 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=24.2
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+ -+++|.|++||||||+.+.|+--+
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 33445 789999999999999999997655
No 214
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.59 E-value=6.3e-05 Score=60.69 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
+...++|.||||+||||+|+.+++.++..++.
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~ 80 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYANADVER 80 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 44579999999999999999999999865544
No 215
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.59 E-value=2.7e-05 Score=58.36 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=25.7
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-+++|.|++|||||||.+.|+--+
T Consensus 26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444577899999999999999999997655
No 216
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.59 E-value=4e-05 Score=58.88 Aligned_cols=30 Identities=7% Similarity=0.216 Sum_probs=26.8
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..+++..++|.||||+|||++++.+++.+
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999999999988
No 217
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.59 E-value=4.4e-05 Score=59.83 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
+..++|.||||+|||++|+.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 358999999999999999999999974
No 218
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.58 E-value=6.4e-05 Score=59.17 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+..++|.|+||+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999999999999976
No 219
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.58 E-value=2.9e-05 Score=57.49 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=25.8
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-+++|.|++||||||+.+.|+--+
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444577899999999999999999997654
No 220
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.58 E-value=2.2e-05 Score=59.20 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=24.9
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.||+||||||+++.|+--+
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 334467899999999999999999997654
No 221
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.58 E-value=5.9e-05 Score=59.25 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+..++|.|++|+||||+++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999977
No 222
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.58 E-value=6.2e-05 Score=61.44 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
+.-++|.||||+||||+++.++...+..++
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i 93 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFI 93 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 344999999999999999999998864433
No 223
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.58 E-value=5.3e-05 Score=55.26 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..+++|.|++||||||+++.++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998654
No 224
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.57 E-value=5.6e-05 Score=58.25 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
.+..+++.||||+||||+++.+++.++..++.
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~ 78 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMF 78 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence 35678889999999999999999999865553
No 225
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.57 E-value=4.9e-05 Score=55.03 Aligned_cols=28 Identities=25% Similarity=0.114 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
.+..+++|.|+|||||||++..++...+
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 45 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSG 45 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999987433
No 226
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.57 E-value=3e-05 Score=58.12 Aligned_cols=30 Identities=33% Similarity=0.378 Sum_probs=25.2
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++|||||||.+.|+--+
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 344567899999999999999999997655
No 227
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.57 E-value=2.5e-05 Score=58.66 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=24.9
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-++.|.|++||||||+++.|+--+
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 334467899999999999999999997654
No 228
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.57 E-value=2.1e-05 Score=54.95 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.++.|.|++||||||+++.|...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998876
No 229
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.56 E-value=5.9e-05 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+++++|++||||||++..++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999997776655
No 230
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.56 E-value=3e-05 Score=57.96 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=25.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-...-+++|.|++||||||+.+.|+--+
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344567899999999999999999997655
No 231
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.56 E-value=5.3e-05 Score=54.30 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
..+++++++|+||||||++|..+...
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45679999999999999999886433
No 232
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.56 E-value=6.4e-05 Score=57.46 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..++|.|+||+||||+|+.+++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 379999999999999999999987
No 233
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.55 E-value=4e-05 Score=57.59 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=24.8
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+.-.+.-+++|.|++|||||||.+.|+--
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44456779999999999999999999874
No 234
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.55 E-value=3.3e-05 Score=57.65 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=25.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++|||||||.+.|+--+
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 444567899999999999999999997654
No 235
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.55 E-value=2.7e-05 Score=57.84 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=25.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++|||||||.+.|+--+
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344567799999999999999999997655
No 236
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.55 E-value=4.1e-05 Score=55.32 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+.-+++|.|++|||||||++.|+-.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999754
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.55 E-value=7.6e-05 Score=61.76 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
++..++|.||||+||||+++.++..++....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 4668999999999999999999999975433
No 238
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.55 E-value=3.4e-05 Score=57.41 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=24.7
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+.-.+.-+++|.|++|||||||.+.|+--
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34456779999999999999999999874
No 239
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.55 E-value=3.3e-05 Score=58.13 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=25.2
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++|||||||++.|+--+
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344567799999999999999999997655
No 240
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.55 E-value=7.8e-05 Score=64.52 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=30.8
Q ss_pred cccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
..+....+..|+|.|+|||||||+++.++..++..++.
T Consensus 231 ~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~ 268 (806)
T 1ypw_A 231 KAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp TSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEE
T ss_pred HhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEE
Confidence 34445567789999999999999999999999865443
No 241
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.54 E-value=7.9e-05 Score=57.44 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=26.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+...++.+|+|+|++||||||++..|+..+
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 334568899999999999999999998877
No 242
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.54 E-value=2.8e-05 Score=57.45 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=25.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++||||||+.+.|+--+
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334467799999999999999999997654
No 243
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.54 E-value=3.5e-05 Score=57.66 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=25.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+..+++|.|++|||||||.+.|+--+
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 444567899999999999999999997654
No 244
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.54 E-value=6.4e-05 Score=57.30 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.++.+|+|.|++||||||++..|+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998765
No 245
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.53 E-value=2.4e-05 Score=56.73 Aligned_cols=29 Identities=34% Similarity=0.353 Sum_probs=24.2
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.-.+.-+++|.|++||||||+.+.|+--+
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33466789999999999999999997654
No 246
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.53 E-value=5.3e-05 Score=58.27 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
+..++|.|+||+||||+|+.+++.++..++
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456899999999999999999999986543
No 247
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.53 E-value=8e-05 Score=57.87 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=25.7
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+...+..++.|.|+|||||||+.+.|+..+
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 345678899999999999999999998654
No 248
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.52 E-value=3e-05 Score=56.88 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=24.6
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.-.+..+++|.|++||||||+.+.|+-.+
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33467789999999999999999997655
No 249
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.52 E-value=5.8e-05 Score=53.93 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=22.8
Q ss_pred ccccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 11 EADATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 11 ~~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
...+.++..+...|+|.|.+|||||||...|...
T Consensus 14 ~~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 14 LYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ---------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3345555567788999999999999999999764
No 250
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.51 E-value=6.9e-05 Score=59.99 Aligned_cols=27 Identities=30% Similarity=0.593 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+|.+|++.|++||||||++..|+..+
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999999777
No 251
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.50 E-value=5.9e-05 Score=53.55 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
...|+|.|++|||||||.+.|+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4679999999999999999997643
No 252
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.50 E-value=4.1e-05 Score=57.48 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=25.9
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-+++|.|++|||||||.+.|+--+
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3445577899999999999999999997654
No 253
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.50 E-value=6.5e-05 Score=52.16 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
...-|+|.|++|+||||+|..|.++ |+..++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lva 45 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLVC 45 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEec
Confidence 3567999999999999999999874 665554
No 254
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.50 E-value=5e-05 Score=53.26 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=21.9
Q ss_pred cccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
......+...|+|.|.+|||||||...|...
T Consensus 14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -------CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ccCCCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3334456788999999999999999999753
No 255
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.48 E-value=3.7e-05 Score=57.14 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=24.7
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-+++|.|++|||||||.+.|+-.+
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334467789999999999999999997654
No 256
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.48 E-value=8e-05 Score=59.68 Aligned_cols=26 Identities=42% Similarity=0.728 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+|.+|+++|++||||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 58999999999999999999999876
No 257
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.48 E-value=0.00016 Score=58.33 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=29.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-----C--CeEeeHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLR 57 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~-----~--~~~i~~~~~~~ 57 (215)
+..++|.|+||+||||+++.++..+ + +.+++..++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~ 173 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 5679999999999999999999977 3 35667666543
No 258
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.47 E-value=3.8e-05 Score=58.03 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=24.6
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.-.+.-+++|.|++|||||||.+.|+-.+
T Consensus 43 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 43 QIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33467789999999999999999997655
No 259
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.47 E-value=5.7e-05 Score=58.96 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=25.6
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-...-++.|.||+||||||+.+.++--.
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3444567899999999999999999998654
No 260
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.46 E-value=0.00011 Score=59.94 Aligned_cols=37 Identities=22% Similarity=0.461 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEe--eHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDL 55 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i--~~~~~ 55 (215)
..+.-|+|.|+||+|||++|+.+++..+..++ ++.++
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l 274 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHh
Confidence 34556999999999999999999999985544 44444
No 261
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.46 E-value=0.00011 Score=57.88 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 028031 23 VVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.++|.|+||+||||+++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999988
No 262
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.46 E-value=7.5e-05 Score=54.90 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+..++.|.|+|||||||++..++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5679999999999999999999884
No 263
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.46 E-value=0.00018 Score=55.20 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC----C--eEeeHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFG----Y--THLSAGDLLRAE 59 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~----~--~~i~~~~~~~~~ 59 (215)
+..++|.|+||+|||+++..++..+. . .++...+++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV 196 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence 56799999999999999999998654 3 346666655543
No 264
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.45 E-value=6.9e-05 Score=52.86 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=22.8
Q ss_pred ccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
..+.+..+...|++.|.+|||||||+..|...
T Consensus 13 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 13 NLYFQGMTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp ------CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cccccccceeEEEEECcCCCCHHHHHHHHHcC
Confidence 33333445678999999999999999999764
No 265
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.45 E-value=4.1e-05 Score=57.04 Aligned_cols=30 Identities=27% Similarity=0.373 Sum_probs=24.9
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.++-+++|.|++||||||+.+.|+--+
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334467789999999999999999997654
No 266
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.45 E-value=9.5e-05 Score=56.28 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
-.+..+++|.|+|||||||+++.++-.+
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3467799999999999999999988765
No 267
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.45 E-value=5.6e-05 Score=58.47 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeE
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~ 49 (215)
.-++|.|+||+|||++++.+++.++..+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3589999999999999999999987543
No 268
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.45 E-value=7.4e-05 Score=52.76 Aligned_cols=33 Identities=21% Similarity=0.083 Sum_probs=23.0
Q ss_pred ccccccCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 11 EADATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 11 ~~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
.+.......+...|+|.|.+|||||||...|..
T Consensus 12 ~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 12 SGLVPRGSKEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp -------CCEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccccCCCCccEEEEECCCCCCHHHHHHHHHc
Confidence 334444445577899999999999999999975
No 269
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.44 E-value=0.00039 Score=55.01 Aligned_cols=151 Identities=9% Similarity=0.093 Sum_probs=79.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
+..+..|+|+||+| +|+.++|.+.+.-.+.++ .+.. ..+...+. +..++ -...++..+.+
T Consensus 229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr~p-R~gE~dG~-------~Y~Fv----~~~~V~~~~~~-- 288 (391)
T 3tsz_A 229 AGFLRPVTIFGPIA---DVAREKLAREEPDIYQIA---KSEP-RDAGTDQR-------SSGII----RLHTIKQIIDQ-- 288 (391)
T ss_dssp CSSCCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CCCC-CCSSSCCC---------CCC----CHHHHHHHHTT--
T ss_pred CCCCCEEEEECCCH---HHHHHHHHhhCccccccc---cCCC-CCcccCCc-------cCCcC----cHHHHHHHHHc--
Confidence 34677899999998 899999988775333332 1110 01111110 00122 24556666554
Q ss_pred CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecC-HHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028031 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (215)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~-~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (215)
|..+|+| ........+.. ....| ++||+..| .+++.+| .+|......+ .+.+++....+ +...|..
T Consensus 289 Gk~~iLd---Id~qg~~~l~~-~~~~p-~~IFI~PPS~~~L~~~-~~r~~~~s~e---~~~~~~~~a~~----~e~~~~~ 355 (391)
T 3tsz_A 289 DKHALLD---VTPNAVDRLNY-AQWYP-IVVFLNPDSKQGVKTM-RMRLCPESRK---SARKLYERSHK----LRKNNHH 355 (391)
T ss_dssp TCEEEEC---CCHHHHHHHHH-TTCCC-EEEEEECCCHHHHHHH-HHHHCSSCCC---CHHHHHHHHHH----HHHHHGG
T ss_pred CCEEEEE---eCHHHHHHHHh-CCCCC-EEEEEeCcCHHHHHHH-HhcCCCCCHH---HHHHHHHHHHH----HHHhccc
Confidence 8999999 44555566666 66667 56777764 5666665 4441111222 23333333211 1222333
Q ss_pred cCcEEEEcCCCCHH-HHHHHHHHhhCCC
Q 028031 177 KGKVRKIDAAKPVA-EVFDAVKAVFTPK 203 (215)
Q Consensus 177 ~~~~~~id~~~~~~-e~~~~i~~~l~~~ 203 (215)
....+++|+ +++ +.++++..++...
T Consensus 356 ~fd~vivNd--~l~~~a~~~l~~ii~~~ 381 (391)
T 3tsz_A 356 LFTTTINLN--SMNDGWYGALKEAIQQQ 381 (391)
T ss_dssp GCSEEEECC--TTCCHHHHHHHHHHHHH
T ss_pred cCcEEEECC--CcHHHHHHHHHHHHHHh
Confidence 334666665 344 4667776666543
No 270
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=9.6e-05 Score=57.45 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
..++|.||||+||||+++.+++.++
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999999864
No 271
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.43 E-value=9e-05 Score=52.29 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=21.7
Q ss_pred CCccccccccccccccCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 1 ~~~~~~~p~~~~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
||-.-+.|-..+.... ..+...|+|.|.+|||||||...|..
T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 1 MGHHHHHHGSLVPRGS-RSRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -------------------CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccccccccccCCCC-CCceEEEEEECCCCCCHHHHHHHHHc
Confidence 3443333433333332 23567899999999999999999875
No 272
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.42 E-value=0.00011 Score=57.91 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+..+|+|.|++||||||+++.|+..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3456789999999999999999998866
No 273
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.42 E-value=0.00012 Score=57.26 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-+|+|+||+||||||+.+.++..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44589999999999999999998766
No 274
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.42 E-value=7.3e-05 Score=58.44 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=25.7
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-...-++.|.||+||||||+.+.|+--.
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3444567899999999999999999998654
No 275
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.42 E-value=9.9e-05 Score=55.51 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.++|.|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998766
No 276
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.42 E-value=0.002 Score=47.29 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+..++.|.|+||+||||+|..++-+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 5779999999999999999887643
No 277
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.41 E-value=7.5e-05 Score=58.74 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-.+.-++.|.||+||||||+.+.|+--+
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 444567899999999999999999998654
No 278
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.40 E-value=0.00012 Score=57.19 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++..+|+|+|+||+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998876
No 279
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.40 E-value=0.00011 Score=54.00 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..+++|.|+|||||||++..++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998887654
No 280
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.40 E-value=7.9e-05 Score=58.27 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=25.7
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-++.|.|++|||||||.+.|+--+
T Consensus 48 sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 48 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3444577899999999999999999997654
No 281
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.40 E-value=7.9e-05 Score=58.31 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=25.7
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-...-++.|.||+||||||+.+.|+--+
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3444567899999999999999999998654
No 282
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.40 E-value=0.00011 Score=51.82 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=24.2
Q ss_pred CCcccccccccc-ccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 1 MGTVVETPVKEA-DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 1 ~~~~~~~p~~~~-~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
||.--+.|.... ...........|+|.|.+|||||||...|...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 1 MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp -------------CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccccccccccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcC
Confidence 444444444433 22323344678999999999999999998754
No 283
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.40 E-value=0.00012 Score=51.71 Aligned_cols=32 Identities=9% Similarity=0.137 Sum_probs=26.0
Q ss_pred ccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
...++..+...|+|.|.+|||||||...|...
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp GGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred hhhCCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34445566788999999999999999999654
No 284
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.39 E-value=2.7e-05 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
.-|+|.|+||+|||++|+.+++..+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 3488999999999999999988776
No 285
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.39 E-value=0.00014 Score=52.92 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=23.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+..+++++|++||||||++..++.++
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3457899999999999999999888877
No 286
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.39 E-value=8.6e-05 Score=57.70 Aligned_cols=23 Identities=22% Similarity=0.496 Sum_probs=21.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 028031 24 VFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 24 I~i~G~~gsGKsTla~~La~~~~ 46 (215)
+++.||||+||||+++.+++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999873
No 287
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.39 E-value=0.00013 Score=56.93 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
...+|+|.|+|||||||+...|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 37889999999999999999998754
No 288
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.39 E-value=8.4e-05 Score=58.40 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=25.6
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-++.|.||+||||||+.+.|+--+
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3444567899999999999999999998654
No 289
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.39 E-value=0.00014 Score=54.21 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
++...|+|.||||+|||++|.+|+..++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34557999999999999999999997644
No 290
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.38 E-value=0.00014 Score=52.59 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+...|+|.|.+||||||++..|+..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998875
No 291
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.38 E-value=6.9e-05 Score=56.91 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
-.+..+++|.|++|||||||.+.|+-.+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3467789999999999999999997654
No 292
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.38 E-value=0.00011 Score=51.12 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.....|+|.|.+|||||||...|...-
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence 345789999999999999999997643
No 293
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.38 E-value=7.2e-05 Score=58.37 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=24.8
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-...-++.|.||+||||||+.+.|+--.
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 333467789999999999999999998654
No 294
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.37 E-value=0.00011 Score=57.21 Aligned_cols=24 Identities=33% Similarity=0.796 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+. ++|.||+|+||||+++.++..+
T Consensus 37 ~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 37 PH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHHHHH
Confidence 44 9999999999999999999965
No 295
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.37 E-value=0.00011 Score=59.64 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
...-++|.|+||+|||++++.|++.+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44567899999999999999999997
No 296
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.37 E-value=0.00014 Score=51.20 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=23.4
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.....+...|+|.|.+|||||||...+...
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 334456678999999999999999888654
No 297
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.36 E-value=0.00012 Score=52.66 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=22.5
Q ss_pred ccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+.-.......|+|.|.+|||||||...|...
T Consensus 20 ~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 20 HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCcccceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 33333345678999999999999999999764
No 298
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.36 E-value=7.4e-05 Score=53.64 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=25.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
++..+...|+|.|++|||||||.+.|+.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 7777888999999999999999998854
No 299
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.36 E-value=0.00012 Score=58.79 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+++.+|+|.|++||||||++..|+..+
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999876
No 300
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.35 E-value=0.0001 Score=56.74 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+..+++|+|+.||||||+.+.|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4568999999999999999999854
No 301
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.35 E-value=7.8e-05 Score=55.84 Aligned_cols=29 Identities=34% Similarity=0.402 Sum_probs=24.3
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
++.-. .-+++|.|++|||||||.+.|+-.
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence 34445 778999999999999999999754
No 302
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.35 E-value=0.00014 Score=51.06 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
++..|+|.|++|||||||...|+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999763
No 303
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.35 E-value=0.00015 Score=62.27 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=29.8
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~ 52 (215)
...+.-|++.||||+|||.+|+++|..++..++..
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v 542 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence 34566799999999999999999999999776653
No 304
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.35 E-value=0.00011 Score=57.80 Aligned_cols=28 Identities=32% Similarity=0.500 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~~ 48 (215)
...++|.|++|||||||++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5689999999999999999999987643
No 305
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.34 E-value=0.00015 Score=56.88 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
+..++|.|++|+||||+++.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999999864
No 306
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.34 E-value=0.00017 Score=57.58 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
.+.-+|+|+||+||||||+.+.|...++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456899999999999999999988874
No 307
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.34 E-value=4.9e-05 Score=58.15 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
-.+..+++|.|++|||||||++.|+.-+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3467789999999999999999997655
No 308
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.34 E-value=0.00012 Score=55.16 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..++.|.|++|||||||+..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999988543
No 309
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.34 E-value=0.00019 Score=49.51 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
+.+...|+|.|.+|||||||...|..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34567899999999999999999965
No 310
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.34 E-value=0.00018 Score=55.64 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHH
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~ 54 (215)
..++|.|++|+||||+++.+++..++.+++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 689999999999999999999988877777644
No 311
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.33 E-value=0.00013 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~ 43 (215)
...|+|.|++|+|||||.+.|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 36799999999999999999975
No 312
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.33 E-value=9.6e-05 Score=57.98 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
...+++|.|++||||||+++.|+..+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 566899999999999999999988764
No 313
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.32 E-value=9.1e-05 Score=58.24 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=24.9
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-...-++.|.||+||||||+.+.|+--.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 334467789999999999999999998654
No 314
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.32 E-value=0.00019 Score=52.17 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+...|+|.|.+||||||++..|+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998875
No 315
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.32 E-value=0.00015 Score=51.19 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=22.3
Q ss_pred ccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.......+...|+|.|.+|||||||...|...
T Consensus 13 ~~~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 13 NLYFQGPLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -------CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred hHHhCCCceEEEEEECCCCCcHHHHHHHHHhC
Confidence 33334456678999999999999999998754
No 316
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.31 E-value=7.6e-05 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La 42 (215)
.+...|+|.|++|||||||...|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 677889999999999999999886
No 317
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.31 E-value=6.7e-05 Score=58.44 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=25.5
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-.+.-++.|.||+||||||+.+.|+--.
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 3444567799999999999999999998654
No 318
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.30 E-value=0.00011 Score=51.79 Aligned_cols=33 Identities=24% Similarity=0.143 Sum_probs=22.4
Q ss_pred ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.......+...|+|.|.+|||||||...|....
T Consensus 13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 13 GLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp --------CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CcccCCCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 344444567889999999999999999986554
No 319
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.30 E-value=0.00019 Score=49.96 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+.+...|+|.|.+|||||||...|...
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999999765
No 320
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.30 E-value=0.00017 Score=51.42 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
...|+|.|++|||||||.+.|+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999999764
No 321
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.30 E-value=0.00019 Score=50.97 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=22.6
Q ss_pred cccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+.+...+...|+|.|.+|||||||...|...
T Consensus 21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred hccCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 3444456778999999999999999999764
No 322
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.30 E-value=0.00012 Score=57.91 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=23.8
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.-.+.-++.|.||+||||||+.+.|+--
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 3346779999999999999999999753
No 323
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.30 E-value=0.00016 Score=50.32 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|+|.|++|||||||...|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 45677999999999999999998653
No 324
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.30 E-value=0.00028 Score=50.16 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+..+++++|++||||||.+..++.++
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3456899999999999999999998887
No 325
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.30 E-value=0.00019 Score=54.86 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++...++|.||||+||||+++.+++.+
T Consensus 36 ~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 36 KNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp TCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 333349999999999999999999986
No 326
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.29 E-value=0.00017 Score=49.52 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+...|+|.|.+|||||||+..|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999999764
No 327
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.29 E-value=0.00022 Score=50.32 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=25.1
Q ss_pred cccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
...+....+.|+|.|.+|||||||...|...
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3444556678999999999999999998664
No 328
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.29 E-value=0.00018 Score=51.16 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=22.0
Q ss_pred ccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+.....+...|+|.|.+|||||||...|...
T Consensus 20 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 20 AKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --------CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCcCcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34445566788999999999999999999753
No 329
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.28 E-value=8.8e-05 Score=57.65 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=22.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 028031 24 VFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 24 I~i~G~~gsGKsTla~~La~~~~ 46 (215)
++|.|+||+|||++|+.+++.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 99999999999999999999886
No 330
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.28 E-value=0.00014 Score=54.36 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAG 53 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~ 53 (215)
+.-|+|.|+||+|||++|+.+++..+ +..+++.
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 34588999999999999999998864 4455543
No 331
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.27 E-value=0.00021 Score=54.86 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
+...++|.|+||+||||+++.+++.++
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 333499999999999999999999863
No 332
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.27 E-value=0.00017 Score=55.30 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC--CeEeeH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA 52 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~ 52 (215)
...++|.|+||+||||||..++...| ..+++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 45689999999999999999987643 334544
No 333
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.26 E-value=0.00018 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 028031 23 VVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
+.+|.|++||||||++++|.--++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 899999999999999999976554
No 334
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.26 E-value=0.00024 Score=55.22 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=25.2
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
...+..+|+|.|+||+||||++..|+..+
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999999998765
No 335
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.25 E-value=0.0002 Score=50.28 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|++.|.+|||||||...|...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 56788999999999999999998653
No 336
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00023 Score=50.24 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|+|.|++||||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999764
No 337
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.25 E-value=0.00019 Score=56.08 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..++.|.|+||||||||+..++-..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999999998876
No 338
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.24 E-value=0.0002 Score=48.95 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+..|+|.|++|||||||...|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999998753
No 339
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.24 E-value=0.00025 Score=57.94 Aligned_cols=27 Identities=33% Similarity=0.629 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.++.+|+|+|++||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999766
No 340
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.24 E-value=0.00023 Score=49.42 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|+|.|.+|||||||...|...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 34577999999999999999999753
No 341
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.24 E-value=0.00023 Score=55.58 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..++.|.|+||||||||+..++...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998765
No 342
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.24 E-value=0.00023 Score=49.60 Aligned_cols=28 Identities=11% Similarity=0.130 Sum_probs=22.3
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+.+...|+|.|.+|+|||||...+...
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 4 SASRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456678999999999999999998753
No 343
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.24 E-value=0.00015 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
.+...|+|.|.+|||||||...|..
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECcCCCCHHHHHHHHHc
Confidence 3567899999999999999999974
No 344
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.24 E-value=0.00029 Score=49.97 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|+|.|.+|||||||...|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999765
No 345
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.23 E-value=0.00021 Score=49.70 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+...|+|.|.+|||||||.+.|+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999764
No 346
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.23 E-value=7.1e-05 Score=58.45 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=25.7
Q ss_pred ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.-...-++.|.||+||||||+.+.|+--.
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3444567899999999999999999998644
No 347
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.22 E-value=0.00019 Score=50.89 Aligned_cols=31 Identities=23% Similarity=0.129 Sum_probs=21.8
Q ss_pred ccccCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
...-++.....|+|.|.+|||||||...|..
T Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -------CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred ccccCCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3344556677899999999999999999854
No 348
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.22 E-value=0.00028 Score=49.99 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=25.0
Q ss_pred cccCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
+.+...+...|+|.|.+|||||||...|..
T Consensus 22 ~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 22 SRIFGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp GGTTTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred HHhccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 444456778899999999999999999854
No 349
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.22 E-value=0.00024 Score=49.32 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
.+...|+|.|.+|||||||...|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999965
No 350
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.21 E-value=0.00025 Score=48.36 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.|++.|.+||||||+...|....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999997643
No 351
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.21 E-value=0.00023 Score=48.61 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~ 44 (215)
..|++.|.+||||||++..|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999999764
No 352
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.21 E-value=0.00027 Score=50.98 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+...|+|.|++||||||+...|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998754
No 353
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00014 Score=58.91 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
-....+++|.|++|||||||++.|+..+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3467789999999999999999998765
No 354
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.20 E-value=0.00033 Score=56.18 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.++.+|++.|++||||||++..|+..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998766
No 355
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.19 E-value=0.00025 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
+...|+|.|.+|+|||||.+.|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 356799999999999999999864
No 356
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.19 E-value=0.0004 Score=51.65 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+..++++.|.+||||||++..|+..+
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3467889999999999999999998665
No 357
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.19 E-value=0.00026 Score=48.48 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
...|++.|.+|||||||...|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999754
No 358
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.18 E-value=0.00032 Score=53.43 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.+|++.|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999777
No 359
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.18 E-value=0.00023 Score=52.76 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=21.8
Q ss_pred ccccCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
+..........|+|.|.+||||||+...|..
T Consensus 13 ~~~~~~~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 13 NLYFQGESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp -------CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CccccCCCceEEEEECCCCCcHHHHHHHHhC
Confidence 3333445678899999999999999999854
No 360
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.18 E-value=0.00026 Score=50.34 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=21.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
..+...|+|.|.+|||||||...|..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 44577899999999999999999864
No 361
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.17 E-value=0.0002 Score=57.09 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=22.0
Q ss_pred CCCCeE--EEEEcCCCCChHHHHHHHHHH
Q 028031 18 VKKPTV--VFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 18 ~~~~~~--I~i~G~~gsGKsTla~~La~~ 44 (215)
-.++.+ ++|.|++|||||||.+.|+..
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 345556 999999999999999999654
No 362
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.17 E-value=0.00024 Score=49.44 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|+|.|.+|||||||...|...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34577999999999999999999763
No 363
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=0.00022 Score=54.61 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 028031 23 VVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.++|.|++|+||||+++.+++.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 39999999999999999999986
No 364
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.16 E-value=0.00015 Score=56.21 Aligned_cols=27 Identities=41% Similarity=0.495 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
...+++|.|++||||||+++.|+..+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 355899999999999999999987763
No 365
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.16 E-value=0.00024 Score=61.14 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+.-++|.|+||+|||++|+.|++.+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999999997
No 366
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.16 E-value=0.00024 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~ 43 (215)
...|++.|.+|||||||...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999975
No 367
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.16 E-value=0.00029 Score=48.28 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
...|+|.|.+|||||||.+.|...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999753
No 368
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=97.15 E-value=0.0013 Score=50.47 Aligned_cols=165 Identities=12% Similarity=0.126 Sum_probs=79.4
Q ss_pred EEEEcCCCCChHH-------HHHHHHHHhCCeEeeH---HHHHHHH--HHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHH
Q 028031 24 VFVLGGPGSGKGT-------QCANIVEHFGYTHLSA---GDLLRAE--IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK 91 (215)
Q Consensus 24 I~i~G~~gsGKsT-------la~~La~~~~~~~i~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (215)
|+|.||.+.|=-+ |...|.++|+-.+.-+ .|+...- .......+..+......+. ......-++.
T Consensus 145 vvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~---~~ev~seVe~ 221 (337)
T 4dey_A 145 VVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS---LAEVQSEIER 221 (337)
T ss_dssp EEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC-------------------CCC---HHHHHHHHHH
T ss_pred eEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhcccchhhhcccccccc---hHHHHhHHHH
Confidence 8999999999764 6666777776432111 0111000 0000011111122222221 1122344555
Q ss_pred HHHcc-CCCeEEEeCCCC-CHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcch
Q 028031 92 AMEES-GNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKRFKVFLESSL 168 (215)
Q Consensus 92 ~~~~~-~~~~~iidg~~~-~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 168 (215)
..... .|+.+|+|--+. .. ..+.. ..+.+- +||+.. +.+++.+|+..| |. +..+.+..++.....
T Consensus 222 i~~v~~~Gk~vILDIDvQnGa---~qlk~-~~~~~i-~IFI~PPS~eeLe~RL~~R--Gt--~~~~rl~~al~~ae~--- 289 (337)
T 4dey_A 222 IFELARTLQLVVLDADTINHP---AQLSK-TSLAPI-VVYVKISSPKVLQRLIKSR--GK--SQAKHLNVQMVAADK--- 289 (337)
T ss_dssp HHHHTTTCCEEEEEETTCCSG---GGTTT-SSCCCE-EEEECCSCHHHHHHHHHTT--CH--HHHTTHHHHHHHHHH---
T ss_pred HHHHHhCCCEEEEEeCcHHHH---HHHHh-cCCCCE-EEEEECcCHHHHHHHHHhC--Cc--hHHHHHHHHHHHHHH---
Confidence 44433 389999994332 22 22333 445553 555555 678899999988 32 222333333322221
Q ss_pred hHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028031 169 PVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK 206 (215)
Q Consensus 169 ~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~ 206 (215)
....+.....++++|+ ++++.++++..++......
T Consensus 290 -E~~~~~~~FDyvIVND--dLe~A~~~L~~iI~~~~~~ 324 (337)
T 4dey_A 290 -LAQCPPELFDVILDEN--QLEDACEHLADYLEAYWKA 324 (337)
T ss_dssp -HHHSCGGGCSEEECCS--SHHHHHHHHHHHHHHHHHH
T ss_pred -HHhhCcccCCEEEECC--CHHHHHHHHHHHHHHHHhc
Confidence 1221223334566654 6888888888888664443
No 369
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.15 E-value=0.00031 Score=49.26 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|+|.|++|||||||...|...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999754
No 370
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.15 E-value=0.00035 Score=53.23 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.+|++.|++||||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67789999999999999999998876
No 371
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.15 E-value=0.00015 Score=62.79 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
..+..++|.||||+||||+|+.++..++..++.
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 345678999999999999999999999754443
No 372
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.14 E-value=0.00022 Score=50.12 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 028031 22 TVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~ 43 (215)
..|+|.|++|||||||.+.|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999976
No 373
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.14 E-value=0.00025 Score=49.72 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+...|+|.|.+|||||||...|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999754
No 374
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.13 E-value=0.00031 Score=50.10 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
....|+|.|.+|||||||...|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999763
No 375
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.13 E-value=0.00027 Score=51.95 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=21.8
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
+......|+|.|.+||||||+...|..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcC
Confidence 344567899999999999999999865
No 376
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.11 E-value=0.0002 Score=58.64 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
.+..|+|+|++||||||+++.|+..+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 455799999999999999999987663
No 377
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.11 E-value=0.00035 Score=54.53 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA 52 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~ 52 (215)
+..++.|.|+|||||||++..++... ...+++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56789999999999999999988654 2455654
No 378
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.11 E-value=0.00025 Score=49.19 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
....|+|.|.+|||||||...|...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3567999999999999999999653
No 379
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.11 E-value=0.0003 Score=48.41 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
....|+|.|.+|||||||...|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3567999999999999999999754
No 380
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.09 E-value=0.00048 Score=53.38 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~ 47 (215)
-+..+++.|++|+||||+|+.+++.+..
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 3567999999999999999999999865
No 381
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.09 E-value=0.00036 Score=47.96 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~ 43 (215)
...|+|.|++|||||||...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45799999999999999999975
No 382
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.08 E-value=0.0004 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.+.+|.|+.||||||+..++.=-+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999999985433
No 383
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.08 E-value=0.00019 Score=58.62 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
.-|+|.|+||+|||++|+.+++.++
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3589999999999999999999874
No 384
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.08 E-value=0.00036 Score=48.94 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.....|+|.|.+|||||||...|...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999764
No 385
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.08 E-value=0.0003 Score=50.43 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.....|+|.|.+|||||||...|...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 34568999999999999999999763
No 386
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.08 E-value=0.00041 Score=49.39 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|+|.|.+|||||||...|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 44577999999999999999999753
No 387
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.07 E-value=0.00033 Score=55.62 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIV 42 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La 42 (215)
+..++.|.|+||||||||+..|+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 46789999999999999999876
No 388
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.07 E-value=0.00045 Score=48.23 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|+|.|.+|||||||...|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999999754
No 389
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.07 E-value=0.00031 Score=48.23 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
...|++.|++|||||||...|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999998653
No 390
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.07 E-value=0.00037 Score=47.75 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 028031 22 TVVFVLGGPGSGKGTQCANIV 42 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La 42 (215)
..|+|.|.+|||||||.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 569999999999999999885
No 391
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.07 E-value=0.00036 Score=54.47 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
...+++|.|++|||||||.+.|+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 35689999999999999999997543
No 392
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.06 E-value=0.00033 Score=49.95 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=21.4
Q ss_pred CCccccccccccccc--cCC--CCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 1 MGTVVETPVKEADAT--VTV--KKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 1 ~~~~~~~p~~~~~~~--~~~--~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
||.-.++|..+.+.. ... .+...|+|.|.+|||||||...|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 1 MGSSHHHHHHSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp ---------------------CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CCccccccccccccccccccccCcceEEEEECcCCCCHHHHHHHHHh
Confidence 444455555544322 111 2356799999999999999999864
No 393
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.06 E-value=0.00037 Score=55.53 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
..+++|.|++||||||+.+.|+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 448999999999999999999763
No 394
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.06 E-value=0.00039 Score=49.17 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=20.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
.+...|++.|.+||||||+...|..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999976
No 395
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.05 E-value=0.00027 Score=50.19 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=22.0
Q ss_pred cccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
...++.+...|+|.|.+|||||||.+.+...+
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 33344567789999999999999999886644
No 396
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.05 E-value=0.00033 Score=48.16 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
...|+|.|.+|||||||.+.|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 467999999999999999999764
No 397
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.04 E-value=0.00035 Score=48.43 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~ 43 (215)
...|+|.|.+|||||||...|..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999974
No 398
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.04 E-value=0.00041 Score=49.45 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|+|.|.+|||||||...|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45678999999999999999999764
No 399
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.04 E-value=0.00041 Score=53.01 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
...+++|.|++|||||||.+.|+ ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 35689999999999999999998 54
No 400
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.04 E-value=0.00034 Score=48.60 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
.....|+|.|.+|||||||...|..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999854
No 401
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.04 E-value=0.00041 Score=48.51 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+...|+|.|.+|||||||...|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999999753
No 402
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.04 E-value=0.00043 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 028031 22 TVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~ 43 (215)
..|+|.|.+|||||||...|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999864
No 403
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.03 E-value=0.0004 Score=48.82 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
....|+|.|.+|||||||...|..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999975
No 404
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.03 E-value=0.00039 Score=48.41 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
....|+|.|.+|||||||...|...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999998753
No 405
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.03 E-value=0.00045 Score=48.25 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+...|+|.|.+|||||||...|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 4577999999999999999999753
No 406
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.02 E-value=0.00047 Score=53.63 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+..++.|.|+|||||||+|..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999876
No 407
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.02 E-value=0.00037 Score=47.82 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
+...|+|.|.+|||||||...|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 346799999999999999999975
No 408
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.02 E-value=0.00057 Score=49.02 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=22.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
..+...|+|.|.+|+|||||...|...
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999999753
No 409
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.02 E-value=0.00044 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+.|+|.|+|||||||+...|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999654
No 410
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.01 E-value=0.00034 Score=49.37 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+.|+|.|.+|||||||...|...-
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 46789999999999999999997654
No 411
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.01 E-value=0.00033 Score=49.47 Aligned_cols=28 Identities=21% Similarity=0.076 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
.....|+|.|.+|||||||.+.|...+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3456799999999999999988876654
No 412
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.00 E-value=0.00059 Score=48.26 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
.....|+|.|.+|||||||...|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 3457899999999999999999976
No 413
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.00 E-value=0.00053 Score=53.62 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA 52 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~ 52 (215)
+..++.|.|+|||||||+|..++... ...+++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 56789999999999999999988764 3456665
No 414
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.00 E-value=0.00074 Score=58.12 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=25.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028031 23 VVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~~~~~i 50 (215)
.++|.||||+|||++|+.+++.++..++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence 6999999999999999999999985544
No 415
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.00 E-value=0.00057 Score=48.21 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
....|+|.|.+|||||||...|...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567999999999999999999763
No 416
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.99 E-value=0.00059 Score=52.45 Aligned_cols=26 Identities=15% Similarity=0.320 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..+++|.|+||+||||++..++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998665
No 417
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.99 E-value=0.00057 Score=54.63 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.+|++.|++||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999999877
No 418
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.98 E-value=0.00063 Score=52.69 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC--CeEeeH
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA 52 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~ 52 (215)
.+++|.|++|+||||+++.+++..+ ..+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 4899999999999999999998875 344544
No 419
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.98 E-value=0.00051 Score=49.37 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|+|.|.+|||||||...|...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999999764
No 420
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.97 E-value=0.00058 Score=47.93 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
..+...|+|.|.+|||||||...|..
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 45678899999999999999999974
No 421
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.97 E-value=0.00048 Score=47.88 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|+|.|.+|||||||...|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999998653
No 422
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.96 E-value=0.00083 Score=48.82 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
...|++.|++|+||||++-.++..+
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4669999999999999988888776
No 423
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.95 E-value=0.00056 Score=50.90 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=22.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
..+...|+|.|.+||||||+...|...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999653
No 424
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.95 E-value=0.00063 Score=46.46 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHH
Q 028031 23 VVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~ 44 (215)
.|++.|.+|||||||...|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999653
No 425
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.95 E-value=0.00049 Score=56.78 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+.-++.|.|++||||||+.+.|+-.+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356799999999999999999997654
No 426
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.94 E-value=0.00061 Score=54.78 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=26.9
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
++-.+.-++.|.|++|||||||++.|+....
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4555778999999999999999999998874
No 427
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.94 E-value=0.00058 Score=52.68 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..++.|.|+|||||||++..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 46789999999999999999998764
No 428
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.94 E-value=0.00053 Score=47.88 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
...|+|.|.+|||||||...|...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999998753
No 429
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.93 E-value=0.00051 Score=53.51 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=26.8
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
++-.+.-++.|.|++||||||+.+.|+....
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4445778999999999999999999998875
No 430
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.93 E-value=0.00048 Score=52.58 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+...|+|.|.||||||||...|...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4457999999999999999999653
No 431
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.93 E-value=0.00058 Score=48.17 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
....|+|.|.+|||||||...|...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999999753
No 432
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.92 E-value=0.00051 Score=48.91 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
.+...|++.|++|||||||.+.|..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999864
No 433
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.92 E-value=0.00075 Score=49.12 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|+|.|.+|||||||...|...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999998653
No 434
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.92 E-value=0.00051 Score=48.54 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+...|+|.|.+|||||||...|...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 4567999999999999999999754
No 435
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.91 E-value=0.00033 Score=50.68 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=25.5
Q ss_pred cccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
..++......|+|.|.+|||||||...|...
T Consensus 22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp GGSCCCCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445556778999999999999999999765
No 436
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.91 E-value=0.00052 Score=54.40 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.8
Q ss_pred CCeEEEE--EcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFV--LGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i--~G~~gsGKsTla~~La~~~ 45 (215)
.+..++| .|++|+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4567888 9999999999999998876
No 437
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.91 E-value=0.00056 Score=48.89 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
....|+|.|.+|||||||...|...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4567999999999999999998753
No 438
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.91 E-value=0.00051 Score=55.72 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=23.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
-.+ -+++|.|++||||||+.+.|+--+
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 344 789999999999999999998765
No 439
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.91 E-value=0.00045 Score=52.73 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
...+++|.|++||||||+.+.|+..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEECCCCCcHHHHHHHhccc
Confidence 3568999999999999999999643
No 440
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.91 E-value=0.00068 Score=48.47 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|+|.|.+|||||||...|...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 45778999999999999999998753
No 441
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.91 E-value=0.00046 Score=57.61 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.++.++.|.|++||||||+++.|+.-+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999997765
No 442
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.90 E-value=0.0006 Score=56.31 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
...-++.|.|++|||||||++.|+-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467799999999999999999998654
No 443
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.90 E-value=0.00051 Score=59.92 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+..++|.|+||+||||+++.+++.+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34557999999999999999999987
No 444
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.89 E-value=0.00047 Score=49.00 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIV 42 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La 42 (215)
....|+|.|.+|||||||...|.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999985
No 445
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.89 E-value=0.00063 Score=49.01 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
+...|+|.|.+|||||||...|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 457899999999999999999964
No 446
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.88 E-value=0.0006 Score=47.80 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~ 44 (215)
..|+|.|.+|||||||...|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 35899999999999999999753
No 447
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.88 E-value=0.0005 Score=57.63 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~~ 46 (215)
...++|.|+||+||||+++.++..++
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 35799999999999999999999875
No 448
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.00051 Score=48.50 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+...|+|.|.+|||||||...|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999764
No 449
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.88 E-value=0.00067 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+..++.|.|+|||||||+|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999864
No 450
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.88 E-value=0.00055 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=20.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
+-.+-|+|.|++|||||||.+.|..
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999999854
No 451
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.87 E-value=0.00071 Score=48.70 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
....|+|.|.+|||||||...|..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhc
Confidence 356799999999999999999975
No 452
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.87 E-value=0.00061 Score=48.13 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+...|+|.|.+|+|||||...|...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 4578999999999999999998764
No 453
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.87 E-value=0.00041 Score=57.91 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.++.++.|.|++||||||+++.|+.-+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456789999999999999999997765
No 454
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.86 E-value=0.0013 Score=47.32 Aligned_cols=28 Identities=18% Similarity=0.110 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+..+.+++|+.||||||.+-.++.++
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4557899999999999999999988877
No 455
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.86 E-value=0.00081 Score=48.15 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.....|+|.|.+|||||||...|...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 44678999999999999999999743
No 456
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.86 E-value=0.00081 Score=48.49 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+...|+|.|.+|||||||...|...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 34678999999999999999998764
No 457
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.85 E-value=0.0006 Score=52.24 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=23.2
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 17 TVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 17 ~~~~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+++.+-.|+|+|.||||||||...|...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4556678999999999999999998643
No 458
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.84 E-value=0.00069 Score=51.78 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-|+|.|+||+|||++|+.+++..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhC
Confidence 4458899999999999999999864
No 459
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.84 E-value=0.00072 Score=48.26 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
....|+|.|.+|||||||...|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3567999999999999999999653
No 460
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.84 E-value=0.00089 Score=54.12 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..+++|.|+||+||||++..++...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999988765
No 461
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.84 E-value=0.00084 Score=53.07 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
.+...+.|.|+|||||||+.+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4577899999999999999999987
No 462
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.84 E-value=0.00079 Score=57.96 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+.-++|.|+||+||||+++.|++.+
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 356678999999999999999999987
No 463
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.83 E-value=0.00048 Score=57.70 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
-.+..++.|.|++||||||+++.|+.-+
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3467799999999999999999997655
No 464
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.83 E-value=0.00078 Score=50.65 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
...|+|.|.||||||||...|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 467999999999999999999763
No 465
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0008 Score=56.29 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+.-++.|.||+||||||+.+.|+-.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3467799999999999999999998654
No 466
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.82 E-value=0.00066 Score=47.80 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+...|+|.|.+|||||||...|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999999764
No 467
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.82 E-value=0.00096 Score=51.00 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~ 51 (215)
...-|+|.|++|+||||+|..|.++ |+..+.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~ 173 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVA 173 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceec
Confidence 3567999999999999999999775 665553
No 468
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.82 E-value=0.00063 Score=50.73 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
+...|++.|.||||||||...|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHC
Confidence 346799999999999999999975
No 469
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.81 E-value=0.00087 Score=57.70 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=23.2
Q ss_pred CCe-EEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPT-VVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~-~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+|. .++|.||||+|||++|+.+++.+
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 343 69999999999999999999987
No 470
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.80 E-value=0.00043 Score=57.93 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.++.++.|.|++||||||+++.|+.-+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 456789999999999999999997665
No 471
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.80 E-value=0.00071 Score=47.79 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
....|+|.|.+|||||||...|..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 355799999999999999999854
No 472
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.79 E-value=0.001 Score=47.02 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
...|+|.|.||+|||||...+...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999999753
No 473
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.77 E-value=0.0011 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
.+-|+|.|++|||||||.+.|+..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTC
T ss_pred CEEEEEECCCCCcHHHHHHHHhCC
Confidence 455899999999999999999754
No 474
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.76 E-value=0.0009 Score=48.35 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCCCeEEEEEcCCCCChHHHHHH-HHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCAN-IVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~-La~~~ 45 (215)
......|+|.|.+|||||||... +...+
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34567899999999999999999 55554
No 475
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.75 E-value=0.00089 Score=55.30 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-++.|.|++|||||||++.|+-.+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998654
No 476
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.75 E-value=0.00073 Score=55.77 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+.-++.|.|++||||||+++.|+-.+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999997654
No 477
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.75 E-value=0.001 Score=50.93 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 028031 23 VVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~ 45 (215)
++.|.|+||||||||+..++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999988876544
No 478
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.74 E-value=0.001 Score=47.30 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
...|+|.|.+|||||||...|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999998653
No 479
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.73 E-value=0.00029 Score=53.86 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
+..+++|.|++|||||||.+.|+.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcc
Confidence 457899999999999999999954
No 480
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.73 E-value=0.0011 Score=52.03 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+...|+|.|.+||||||+++.+.=.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHh
Confidence 457789999999999999999995433
No 481
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.72 E-value=0.00075 Score=47.43 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La 42 (215)
.+...|+|.|.+||||||+...|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 467789999999999999999984
No 482
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.72 E-value=0.00092 Score=55.08 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHH
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANI 41 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~L 41 (215)
.+..+++|.|++|||||||++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 36779999999999999999994
No 483
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.72 E-value=0.0011 Score=47.45 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.+.+|.|+.||||||+..++.=-+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999986544
No 484
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.72 E-value=0.00096 Score=55.87 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-+++|.|++|||||||++.|+-.+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998654
No 485
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.71 E-value=0.00095 Score=47.56 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
....|+|.|.+|||||||...|..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhh
Confidence 456799999999999999999965
No 486
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.70 E-value=0.0012 Score=51.76 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA 52 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~ 52 (215)
+..++.|.|+|||||||+|..++... ...+++.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 46689999999999999999988765 3566665
No 487
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.70 E-value=0.00037 Score=58.09 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 18 ~~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
-.++.++.|.||+||||||+++.|+..+
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3467789999999999999999987655
No 488
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.70 E-value=0.0011 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 028031 23 VVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.++|.|+|||||||++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998887
No 489
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.69 E-value=0.00087 Score=56.11 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
...-++.|.|++||||||+.+.|+-.+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 467799999999999999999997654
No 490
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.69 E-value=0.00057 Score=47.70 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=10.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~ 43 (215)
...|+|.|.+|||||||...|..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999999864
No 491
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.68 E-value=0.0011 Score=57.77 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..++|.|+||+|||++|+.|++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999988
No 492
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.68 E-value=0.0013 Score=54.83 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 21 ~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
..+++|.|+||+||||++..+...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 493
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.66 E-value=0.0013 Score=49.50 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+...|+|.|.+|||||||...|...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999764
No 494
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.65 E-value=0.0014 Score=52.74 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..+++|.|+||+||||++..++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988764
No 495
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.65 E-value=0.0011 Score=49.25 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 028031 22 TVVFVLGGPGSGKGTQCANIVEH 44 (215)
Q Consensus 22 ~~I~i~G~~gsGKsTla~~La~~ 44 (215)
+.|++.|.||||||||...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999754
No 496
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.65 E-value=0.0016 Score=50.47 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+.-+++|.|.||+||||++..++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998775
No 497
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.63 E-value=0.0011 Score=51.92 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 028031 23 VVFVLGGPGSGKGTQCANIV 42 (215)
Q Consensus 23 ~I~i~G~~gsGKsTla~~La 42 (215)
+.+|+|++||||||+..+++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999986
No 498
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.63 E-value=0.0014 Score=47.32 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~ 43 (215)
....|+|.|.+|+|||||..++..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346799999999999999999874
No 499
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.62 E-value=0.0014 Score=54.00 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 20 ~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
+..++.|.|++|||||||++.++...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998655
No 500
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.62 E-value=0.00055 Score=57.18 Aligned_cols=27 Identities=41% Similarity=0.447 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028031 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (215)
Q Consensus 19 ~~~~~I~i~G~~gsGKsTla~~La~~~ 45 (215)
.+..++.|.|++||||||+++.|+..+
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457789999999999999999997655
Done!