Query 028034
Match_columns 215
No_of_seqs 110 out of 1216
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:14:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0398 Uncharacterized conser 100.0 3.3E-29 7.2E-34 203.3 22.6 155 28-183 29-184 (223)
2 COG0586 DedA Uncharacterized m 99.9 5.1E-25 1.1E-29 177.7 14.8 140 52-192 20-171 (208)
3 PF09335 SNARE_assoc: SNARE as 99.9 1.7E-23 3.7E-28 155.0 14.1 119 65-183 1-122 (123)
4 PRK10847 hypothetical protein; 99.9 2.5E-23 5.4E-28 169.2 13.6 152 36-189 17-182 (219)
5 COG1238 Predicted membrane pro 99.7 3.9E-16 8.4E-21 120.1 15.4 149 34-186 6-157 (161)
6 KOG3140 Predicted membrane pro 99.5 1.6E-13 3.4E-18 113.9 10.7 161 36-196 83-245 (275)
7 PF06695 Sm_multidrug_ex: Puta 97.7 0.00092 2E-08 49.3 10.8 98 78-176 14-120 (121)
8 PRK09609 hypothetical protein; 80.2 9.6 0.00021 32.6 7.4 22 163-184 171-192 (312)
9 PRK11677 hypothetical protein; 80.1 4.6 0.0001 30.3 4.9 24 84-107 3-26 (134)
10 PRK01844 hypothetical protein; 78.4 12 0.00025 24.9 5.8 31 81-111 4-34 (72)
11 PF06695 Sm_multidrug_ex: Puta 78.3 9 0.0002 28.1 6.0 46 44-96 71-120 (121)
12 PRK00523 hypothetical protein; 77.5 13 0.00027 24.7 5.8 30 82-111 6-35 (72)
13 COG2426 Predicted membrane pro 77.3 27 0.00059 25.9 8.8 106 77-183 17-137 (142)
14 PF07155 ECF-ribofla_trS: ECF- 74.7 4.6 9.9E-05 31.0 3.8 33 66-98 37-69 (169)
15 TIGR02359 thiW thiW protein. L 73.5 40 0.00086 26.0 10.8 32 67-98 34-65 (160)
16 PF01148 CTP_transf_1: Cytidyl 72.7 6.4 0.00014 32.1 4.4 27 82-108 130-156 (259)
17 PRK10527 hypothetical protein; 72.4 13 0.00029 27.4 5.6 53 53-130 13-66 (125)
18 PRK13661 hypothetical protein; 71.3 7.9 0.00017 30.6 4.4 33 66-98 39-71 (182)
19 COG0398 Uncharacterized conser 70.9 56 0.0012 26.6 11.8 86 24-110 28-115 (223)
20 COG0586 DedA Uncharacterized m 69.4 20 0.00044 28.7 6.6 70 31-108 97-167 (208)
21 PRK11624 cdsA CDP-diglyceride 69.3 3.3 7.1E-05 35.1 2.0 36 85-120 155-190 (285)
22 PF03672 UPF0154: Uncharacteri 67.3 16 0.00035 23.7 4.4 25 86-110 2-26 (64)
23 PRK10847 hypothetical protein; 65.3 33 0.00071 27.7 7.1 65 122-186 17-97 (219)
24 COG0575 CdsA CDP-diglyceride s 64.9 4.6 9.9E-05 33.7 2.0 26 84-109 136-161 (265)
25 PF06295 DUF1043: Protein of u 63.0 13 0.00028 27.5 3.9 22 87-108 2-23 (128)
26 PF09335 SNARE_assoc: SNARE as 62.4 52 0.0011 23.2 7.7 43 60-102 78-121 (123)
27 COG1238 Predicted membrane pro 62.0 44 0.00095 25.8 6.8 52 139-191 31-82 (161)
28 PF11139 DUF2910: Protein of u 61.9 81 0.0017 25.2 12.1 17 119-135 181-197 (214)
29 TIGR00937 2A51 chromate transp 52.5 1.6E+02 0.0035 25.8 10.9 61 44-104 235-296 (368)
30 COG3763 Uncharacterized protei 51.9 67 0.0015 21.2 5.5 27 81-107 4-30 (71)
31 COG2832 Uncharacterized protei 51.8 44 0.00096 24.4 4.9 51 56-131 16-67 (119)
32 TIGR00261 traB pheromone shutd 49.0 1.9E+02 0.0042 25.6 13.1 42 5-47 238-280 (380)
33 PF02417 Chromate_transp: Chro 48.3 1.2E+02 0.0027 23.2 11.4 72 34-105 24-97 (169)
34 PF12822 DUF3816: Protein of u 46.4 29 0.00064 26.4 3.7 31 67-97 31-61 (172)
35 COG4720 Predicted membrane pro 44.1 40 0.00087 26.4 4.0 37 68-104 41-77 (177)
36 PF06305 DUF1049: Protein of u 43.7 83 0.0018 19.9 5.4 10 119-128 56-65 (68)
37 PLN02953 phosphatidate cytidyl 41.0 18 0.00039 32.1 1.8 28 84-111 271-298 (403)
38 KOG1109 Vacuole membrane prote 39.1 15 0.00033 32.4 1.1 90 85-174 213-321 (440)
39 COG2839 Uncharacterized protei 38.9 1.8E+02 0.0038 22.3 7.8 22 58-79 17-39 (160)
40 COG4732 Predicted membrane pro 38.8 51 0.0011 25.3 3.7 24 92-115 145-168 (177)
41 PRK11469 hypothetical protein; 38.5 2E+02 0.0043 22.7 9.6 110 70-186 49-159 (188)
42 COG3105 Uncharacterized protei 38.0 1.1E+02 0.0025 22.7 5.3 26 82-107 6-31 (138)
43 PF14163 SieB: Superinfection 36.2 1.8E+02 0.004 21.7 7.4 31 61-91 11-45 (151)
44 PRK12821 aspartyl/glutamyl-tRN 35.4 56 0.0012 29.6 4.0 27 68-94 99-125 (477)
45 PF13314 DUF4083: Domain of un 34.2 98 0.0021 19.6 3.8 14 117-130 45-58 (58)
46 PF04246 RseC_MucC: Positive r 33.3 1.6E+02 0.0034 21.6 5.7 25 84-108 96-120 (135)
47 PF09512 ThiW: Thiamine-precur 32.6 2.3E+02 0.0049 21.7 7.3 74 30-105 30-115 (150)
48 COG3086 RseC Positive regulato 30.9 2E+02 0.0043 21.9 5.7 24 85-108 104-127 (150)
49 PLN02594 phosphatidate cytidyl 30.6 38 0.00082 29.5 2.2 32 79-111 123-154 (342)
50 PF03613 EIID-AGA: PTS system 30.2 3.3E+02 0.0072 22.8 10.4 94 78-176 133-229 (264)
51 TIGR03750 conj_TIGR03750 conju 29.2 2.2E+02 0.0049 20.5 8.4 46 85-131 49-94 (111)
52 PF06341 DUF1056: Protein of u 28.7 97 0.0021 20.0 3.2 45 146-190 14-58 (63)
53 PF11990 DUF3487: Protein of u 28.5 2.4E+02 0.0052 20.7 8.5 12 120-131 86-97 (121)
54 PF11286 DUF3087: Protein of u 27.5 2.3E+02 0.0049 22.1 5.7 58 84-141 49-117 (165)
55 PRK13461 F0F1 ATP synthase sub 27.2 1.5E+02 0.0032 22.5 4.7 34 1-34 1-34 (159)
56 PRK10862 SoxR reducing system 26.7 1.9E+02 0.0041 22.0 5.2 23 86-108 105-127 (154)
57 PRK11677 hypothetical protein; 26.4 1.5E+02 0.0033 22.2 4.5 27 80-106 3-29 (134)
58 PF07332 DUF1469: Protein of u 25.7 2.5E+02 0.0054 19.9 7.4 26 79-104 70-95 (121)
59 PRK03001 M48 family peptidase; 25.2 1.7E+02 0.0036 24.6 5.1 33 74-106 20-52 (283)
60 COG0170 SEC59 Dolichol kinase 24.7 87 0.0019 25.3 3.2 27 82-108 114-140 (216)
61 PRK03072 heat shock protein Ht 24.3 2.3E+02 0.005 23.9 5.8 31 74-105 24-54 (288)
62 PRK14219 camphor resistance pr 23.9 1.8E+02 0.0039 21.5 4.6 25 84-108 98-122 (132)
63 PF02417 Chromate_transp: Chro 23.7 2.2E+02 0.0047 21.8 5.2 63 126-189 37-101 (169)
64 COG3275 LytS Putative regulato 22.7 5.6E+02 0.012 23.8 8.0 69 22-90 16-93 (557)
65 PRK14400 membrane protein; Pro 22.2 2.2E+02 0.0047 22.9 4.9 45 83-127 7-52 (201)
66 PF11364 DUF3165: Protein of u 22.1 2.6E+02 0.0057 18.9 5.4 50 23-73 11-60 (81)
67 PRK14407 membrane protein; Pro 21.9 1.6E+02 0.0035 23.9 4.3 47 83-129 7-54 (219)
68 PRK04897 heat shock protein Ht 21.7 2.5E+02 0.0054 23.8 5.6 24 82-105 41-64 (298)
69 PF06847 Arc_PepC_II: Archaeal 21.4 82 0.0018 21.9 2.1 16 138-154 67-82 (93)
70 COG4064 MtrG Tetrahydromethano 21.0 1.8E+02 0.0039 19.2 3.4 23 74-96 50-72 (75)
71 PF01102 Glycophorin_A: Glycop 20.8 1.7E+02 0.0036 21.6 3.7 11 96-106 83-93 (122)
No 1
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=3.3e-29 Score=203.29 Aligned_cols=155 Identities=34% Similarity=0.698 Sum_probs=143.5
Q ss_pred cchHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 028034 28 LPVEKILKDFLTWVDQDLGPWGPLV-LAVAYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIG 106 (215)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~~~l-~~~~~~~~~~~~iP~~~l~~~~g~~~g~~~g~l~~~~g~~lg~~i~y~lgr~~~ 106 (215)
...++..+++.+|++ +++.+++++ +++......++++|++++..++|..||+.+|.+++.+|+++|+.++|+++|+++
T Consensus 29 ~~~~~~~~~l~~~i~-~~g~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~g 107 (223)
T COG0398 29 LVLLLDPETLREWIQ-AYGALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLG 107 (223)
T ss_pred HHhccCHHHHHHHHH-HcCchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456789999999 899999999 555555666667999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHhcchHHHHHHHhhcCCCChhhHHHHhhccCCChhhHHHHHHHhHHHHHHHHHHHhh
Q 028034 107 KPFVISKLKDYPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGT 183 (215)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~r~~P~~p~~~~~~~~G~~~~~~~~f~~~~~ig~~~~~~~~~~~G~ 183 (215)
++..+++.+++++.++.++.++|+|++.+++.|++|++|+|.+||++|.+++|+++|.+++.+|+.|.+++|+++|+
T Consensus 108 r~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~ 184 (223)
T COG0398 108 RDWVLKFVGGKEKVQRIDAGLERNGFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGS 184 (223)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhCChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999888888899999999999999999999999999999999999999999999999999999999999999997
No 2
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.93 E-value=5.1e-25 Score=177.65 Aligned_cols=140 Identities=21% Similarity=0.403 Sum_probs=124.8
Q ss_pred HHHHHHHHH---hhccCChHHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHhc----CChH
Q 028034 52 VLAVAYIPL---TILAVPASVLTLGGGYL-----FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLK----DYPQ 119 (215)
Q Consensus 52 l~~~~~~~~---~~~~iP~~~l~~~~g~~-----~g~~~g~l~~~~g~~lg~~i~y~lgr~~~~~~~~~~~~----~~~~ 119 (215)
+|...+.+. ..+|+|++++++.+|++ .+++...+.+.+|+++||.++|++||++|++..+++.+ ++++
T Consensus 20 ~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~~~~~~ 99 (208)
T COG0586 20 VFLILFLESGLLVGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRLLKRKK 99 (208)
T ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhccCCHHH
Confidence 344445554 56779999999999998 55788999999999999999999999999888776655 5689
Q ss_pred HHHHHHHHhcchHHHHHHHhhcCCCChhhHHHHhhccCCChhhHHHHHHHhHHHHHHHHHHHhhhhccccccc
Q 028034 120 FRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDVT 192 (215)
Q Consensus 120 ~~~~~~~~~~~g~~~i~~~r~~P~~p~~~~~~~~G~~~~~~~~f~~~~~ig~~~~~~~~~~~G~~~~~~~~~~ 192 (215)
.+|.+++++|||.+.++++|++|++++ ++++.+|++|||+++|...+.+|.++|..++++.|+.+++..+..
T Consensus 100 l~~a~~~f~r~G~~~vf~~RFip~vRt-~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~~~~~~ 171 (208)
T COG0586 100 LDKAELLFERHGLFAIFLGRFIPGVRT-LVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEVIDVL 171 (208)
T ss_pred HHHHHHHHHHcCchhhhhhcccchhHh-hhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 999999999999999999999999997 999999999999999999999999999999999999998776643
No 3
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.91 E-value=1.7e-23 Score=155.00 Aligned_cols=119 Identities=36% Similarity=0.695 Sum_probs=110.9
Q ss_pred CChHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHhcCChHHHH---HHHHHhcchHHHHHHHhhc
Q 028034 65 VPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRS---VALAIQRSGFKIVLLLRLV 141 (215)
Q Consensus 65 iP~~~l~~~~g~~~g~~~g~l~~~~g~~lg~~i~y~lgr~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~i~~~r~~ 141 (215)
+|++++++++|..+|+..+++++.+|+++|+.++|++||+++++..+++..++++.++ .++.++|||.+.+++.|++
T Consensus 1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~ 80 (123)
T PF09335_consen 1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQKYGFWVLFLSRFI 80 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999997667766666555555 8899999999999999999
Q ss_pred CCCChhhHHHHhhccCCChhhHHHHHHHhHHHHHHHHHHHhh
Q 028034 142 PLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGT 183 (215)
Q Consensus 142 P~~p~~~~~~~~G~~~~~~~~f~~~~~ig~~~~~~~~~~~G~ 183 (215)
|++|++++|+++|.+++|+++|+.++.+|..||+.++++.|+
T Consensus 81 P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~ 122 (123)
T PF09335_consen 81 PGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGY 122 (123)
T ss_pred HHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999997
No 4
>PRK10847 hypothetical protein; Provisional
Probab=99.90 E-value=2.5e-23 Score=169.17 Aligned_cols=152 Identities=16% Similarity=0.292 Sum_probs=125.5
Q ss_pred HHHHHHHhcCCChHHHH-HHHHHHHH---hhccCChHHHHHHHHhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHH
Q 028034 36 DFLTWVDQDLGPWGPLV-LAVAYIPL---TILAVPASVLTLGGGYLFG-------LPVGFVADSIGATIGAGAAFLLGRT 104 (215)
Q Consensus 36 ~l~~~~~~~~~~~~~~l-~~~~~~~~---~~~~iP~~~l~~~~g~~~g-------~~~g~l~~~~g~~lg~~i~y~lgr~ 104 (215)
.+.++++ +++++++.+ +...+.+. ..+++|++++.+.+|...+ ++..++++++|+++||.++|++||+
T Consensus 17 ~~~~~~~-~~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~ 95 (219)
T PRK10847 17 HLAELVA-QYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRL 95 (219)
T ss_pred HHHHHHH-HhhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555 788887654 44444443 2355899999888887743 5577889999999999999999999
Q ss_pred hCHHHHHHH---hcCChHHHHHHHHHhcchHHHHHHHhhcCCCChhhHHHHhhccCCChhhHHHHHHHhHHHHHHHHHHH
Q 028034 105 IGKPFVISK---LKDYPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYV 181 (215)
Q Consensus 105 ~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~i~~~r~~P~~p~~~~~~~~G~~~~~~~~f~~~~~ig~~~~~~~~~~~ 181 (215)
+|++..+++ ..++++.+|.+++++|||.+.++++|++|++|+ +.|+++|+++||+++|+..+.+|.++|+.+++..
T Consensus 96 ~G~~~l~~~~~~~~~~~~l~~~~~~~~r~G~~~v~i~RfiP~~R~-~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~~~ 174 (219)
T PRK10847 96 FGEKLFSNPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPIVRT-FAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYA 174 (219)
T ss_pred hCHHHhhccccccCCHHHHHHHHHHHHHcCCEEEEeeCCccchHh-HHHHHhHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 998876532 224567899999999999999999999999995 8999999999999999999999999999999999
Q ss_pred hhhhcccc
Q 028034 182 GTTLKDLS 189 (215)
Q Consensus 182 G~~~~~~~ 189 (215)
|+.+++..
T Consensus 175 Gy~~g~~~ 182 (219)
T PRK10847 175 GYFFGTLP 182 (219)
T ss_pred HHHHcCCH
Confidence 99998764
No 5
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.72 E-value=3.9e-16 Score=120.06 Aligned_cols=149 Identities=20% Similarity=0.242 Sum_probs=122.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhccCChHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Q 028034 34 LKDFLTWVDQDLGPWGPLVLAVAYIPLTILAVPASVLTLGGGYL-FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVIS 112 (215)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~l~~~~g~~-~g~~~g~l~~~~g~~lg~~i~y~lgr~~~~~~~~~ 112 (215)
.+...++..+.+++++ +|+..++..+++|+|+|++.+..-.. ..++....++.+|+++|+.++|++||..++...++
T Consensus 6 ~~~~~~~~~~~~a~~~--Lf~vaF~eat~lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~ 83 (161)
T COG1238 6 YDWTLSLMSQAYAYAG--LFIVAFLEATLLPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARR 83 (161)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHH
Confidence 3444555555666544 57788899999999999876554444 88999999999999999999999999998776665
Q ss_pred Hhc-CChHHHHHHH-HHhcchHHHHHHHhhcCCCChhhHHHHhhccCCChhhHHHHHHHhHHHHHHHHHHHhhhhc
Q 028034 113 KLK-DYPQFRSVAL-AIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLK 186 (215)
Q Consensus 113 ~~~-~~~~~~~~~~-~~~~~g~~~i~~~r~~P~~p~~~~~~~~G~~~~~~~~f~~~~~ig~~~~~~~~~~~G~~~~ 186 (215)
+.. ++++.++.++ +.+|+|.+.++++-+.| +| |+.+.++|..++|+.+|+...++|+..+....+++....+
T Consensus 84 ~~~~~~~~~~~~~~~~~~ryg~~~ll~s~lp~-ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~~ 157 (161)
T COG1238 84 WFPGSEEALEKLQEKWYRRYGVWTLLLSWLPP-IG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLGG 157 (161)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHhccc-cc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 443 3566777766 78999999999998877 99 8999999999999999999999999999999988887554
No 6
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=99.50 E-value=1.6e-13 Score=113.94 Aligned_cols=161 Identities=28% Similarity=0.477 Sum_probs=132.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhccCChH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHh
Q 028034 36 DFLTWVDQDLGPWGPLVLAVAYIPLTILAVPAS-VLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKL 114 (215)
Q Consensus 36 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~iP~~-~l~~~~g~~~g~~~g~l~~~~g~~lg~~i~y~lgr~~~~~~~~~~~ 114 (215)
...+-..+++.....+.++........+++|+. ...+.+|..||++.|.++.+..+.+|++++|.+.+.++|+.+.+.+
T Consensus 83 ~vl~~y~~~~~a~~~~~~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~ 162 (275)
T KOG3140|consen 83 AVLRKYKATYFAAVLLGFIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLF 162 (275)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHh
Confidence 333333335555567777777888888999976 4677899999999999999999999999999999999999988877
Q ss_pred cCChHHHHHHHHHhcch-HHHHHHHhhcCCCChhhHHHHhhccCCChhhHHHHHHHhHHHHHHHHHHHhhhhcccccccc
Q 028034 115 KDYPQFRSVALAIQRSG-FKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDVTH 193 (215)
Q Consensus 115 ~~~~~~~~~~~~~~~~g-~~~i~~~r~~P~~p~~~~~~~~G~~~~~~~~f~~~~~ig~~~~~~~~~~~G~~~~~~~~~~~ 193 (215)
+++.+.-+.....+|++ +....+.|.+|..|+.+.|++++..++|++.|..+++.|.+|.+.++.-.|...+++++..+
T Consensus 163 p~~~~~~~~~~~~~~~~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l~s~~~ 242 (275)
T KOG3140|consen 163 PDKIAFLQQDVELNRNSLLNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASLTSASD 242 (275)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhhccccc
Confidence 75433333333345555 66799999999999999999999999999999999999999999999999999988877766
Q ss_pred CCc
Q 028034 194 GWN 196 (215)
Q Consensus 194 ~~~ 196 (215)
..+
T Consensus 243 ~~~ 245 (275)
T KOG3140|consen 243 AFS 245 (275)
T ss_pred ccC
Confidence 554
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=97.69 E-value=0.00092 Score=49.35 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=72.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCHHH-----HHHHhcC-ChHHHHHHHHHhcchHHHHHHHhhcCCCC---hhh
Q 028034 78 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPF-----VISKLKD-YPQFRSVALAIQRSGFKIVLLLRLVPLLP---FNM 148 (215)
Q Consensus 78 ~g~~~g~l~~~~g~~lg~~i~y~lgr~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~g~~~i~~~r~~P~~p---~~~ 148 (215)
++++..++++.+|+.+.....++.-++..+.. .++..++ .++.++-++..||||++.+.+.-.+| +| -+.
T Consensus 14 l~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~kyg~~GL~lFVaIP-lP~TG~wt 92 (121)
T PF06695_consen 14 LPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIEKYGFWGLALFVAIP-LPGTGAWT 92 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCC-CCcchHHH
Confidence 66889999999999988887777776653321 1211111 23455667778999999888777777 66 457
Q ss_pred HHHHhhccCCChhhHHHHHHHhHHHHHH
Q 028034 149 LNYLLSVTPVPLLEYMLASWIGMMPITL 176 (215)
Q Consensus 149 ~~~~~G~~~~~~~~f~~~~~ig~~~~~~ 176 (215)
-+.++-+.+++.++=+.+..+|.....+
T Consensus 93 gal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 93 GALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 8888899999999999999999876653
No 8
>PRK09609 hypothetical protein; Provisional
Probab=80.17 E-value=9.6 Score=32.64 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=11.6
Q ss_pred HHHHHHHhHHHHHHHHHHHhhh
Q 028034 163 YMLASWIGMMPITLALVYVGTT 184 (215)
Q Consensus 163 f~~~~~ig~~~~~~~~~~~G~~ 184 (215)
+..+..+....-.+++...|..
T Consensus 171 ~i~a~ii~~~i~l~i~~~~~~~ 192 (312)
T PRK09609 171 WIAALIILVIIILFIYFVVGFL 192 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4445555555555555555554
No 9
>PRK11677 hypothetical protein; Provisional
Probab=80.12 E-value=4.6 Score=30.27 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCH
Q 028034 84 FVADSIGATIGAGAAFLLGRTIGK 107 (215)
Q Consensus 84 ~l~~~~g~~lg~~i~y~lgr~~~~ 107 (215)
+++..+|-++|..++|+++|...+
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~ 26 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNR 26 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 456678889999999999997643
No 10
>PRK01844 hypothetical protein; Provisional
Probab=78.43 E-value=12 Score=24.90 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Q 028034 81 PVGFVADSIGATIGAGAAFLLGRTIGKPFVI 111 (215)
Q Consensus 81 ~~g~l~~~~g~~lg~~i~y~lgr~~~~~~~~ 111 (215)
+..+++..++..+|...+|+++|+.-++.++
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788899999999999987544333
No 11
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=78.32 E-value=9 Score=28.07 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=29.6
Q ss_pred cCCChHHHHHHHHHHHHhhccCChH--HHHHHHHhhhh--hhHHHHHHHHHHHHHHH
Q 028034 44 DLGPWGPLVLAVAYIPLTILAVPAS--VLTLGGGYLFG--LPVGFVADSIGATIGAG 96 (215)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~iP~~--~l~~~~g~~~g--~~~g~l~~~~g~~lg~~ 96 (215)
+++.+|..+|+. .|+|++ -.-.+.+..+| ....++...+|..+++.
T Consensus 71 kyg~~GL~lFVa-------IPlP~TG~wtgal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 71 KYGFWGLALFVA-------IPLPGTGAWTGALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHhHHHHHHHHh-------CCCCcchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 677767655433 366743 45555566655 67778888888877765
No 12
>PRK00523 hypothetical protein; Provisional
Probab=77.53 E-value=13 Score=24.73 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Q 028034 82 VGFVADSIGATIGAGAAFLLGRTIGKPFVI 111 (215)
Q Consensus 82 ~g~l~~~~g~~lg~~i~y~lgr~~~~~~~~ 111 (215)
..+++..++..+|...+|+++|+.-++.++
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677888999999999987544333
No 13
>COG2426 Predicted membrane protein [Function unknown]
Probab=77.35 E-value=27 Score=25.94 Aligned_cols=106 Identities=13% Similarity=0.025 Sum_probs=64.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH---HHhcC---------ChHHHHHHHHHhcchHHHHHHHhhcCCC
Q 028034 77 LFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVI---SKLKD---------YPQFRSVALAIQRSGFKIVLLLRLVPLL 144 (215)
Q Consensus 77 ~~g~~~g~l~~~~g~~lg~~i~y~lgr~~~~~~~~---~~~~~---------~~~~~~~~~~~~~~g~~~i~~~r~~P~~ 144 (215)
-++++.....+.+|...=+.+-+.+-+...+...+ +++++ ++..+|.....||+|+..+.+.-.+| .
T Consensus 17 G~~~~Eal~~silGvL~l~~lL~~~l~~id~im~kl~~~rl~r~~~lY~~~~~r~~rka~~yVER~G~iGL~iFvAIP-L 95 (142)
T COG2426 17 GLSPLEALLLSILGVLPLSLLLPLLLDPIDRIMLKLKWTRLQRPACLYDWLVNRTRRKAKGYVERYGFIGLIIFVAIP-L 95 (142)
T ss_pred CCCHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHhccCcHhhhhhhhhhheeecc-C
Confidence 36678888887777555555555544443221111 11111 12333434457889988777777777 6
Q ss_pred Chh---hHHHHhhccCCChhhHHHHHHHhHHHHHHHHHHHhh
Q 028034 145 PFN---MLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGT 183 (215)
Q Consensus 145 p~~---~~~~~~G~~~~~~~~f~~~~~ig~~~~~~~~~~~G~ 183 (215)
|.. --+.++-+.+++.++-+.+...|......+.+..+.
T Consensus 96 P~TG~wtgaLaA~llgI~~r~a~~al~~Gg~is~~vt~l~s~ 137 (142)
T COG2426 96 PGTGAWTGALAAYLLGIRERFAFAALSAGGLISGAVTTLPSI 137 (142)
T ss_pred CCccHhHHHHHHHHHcCchHHHHHHHHHhhHHHHHHHHhhcc
Confidence 642 245666688899988888888887777666655544
No 14
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=74.73 E-value=4.6 Score=31.03 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=28.7
Q ss_pred ChHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 028034 66 PASVLTLGGGYLFGLPVGFVADSIGATIGAGAA 98 (215)
Q Consensus 66 P~~~l~~~~g~~~g~~~g~l~~~~g~~lg~~i~ 98 (215)
|+......+|..+||..|.++..+|..++|.+.
T Consensus 37 ~~~~~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 37 LGSIPIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred hhhHHHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 356788889999999999999999999999854
No 15
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=73.53 E-value=40 Score=26.05 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=27.8
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 028034 67 ASVLTLGGGYLFGLPVGFVADSIGATIGAGAA 98 (215)
Q Consensus 67 ~~~l~~~~g~~~g~~~g~l~~~~g~~lg~~i~ 98 (215)
+.+..+.+|..+||++|.+...+++.+++...
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~ 65 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG 65 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence 45788889999999999999999998888754
No 16
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=72.70 E-value=6.4 Score=32.06 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHH
Q 028034 82 VGFVADSIGATIGAGAAFLLGRTIGKP 108 (215)
Q Consensus 82 ~g~l~~~~g~~lg~~i~y~lgr~~~~~ 108 (215)
...+........||..+|.+||++||.
T Consensus 130 ~~~~~~i~~~~~gD~~A~l~G~~fGk~ 156 (259)
T PF01148_consen 130 PLALIGILILGIGDSFAYLVGRRFGKH 156 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344566777889999999999999986
No 17
>PRK10527 hypothetical protein; Provisional
Probab=72.43 E-value=13 Score=27.45 Aligned_cols=53 Identities=19% Similarity=0.123 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcc-CChHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHhcCChHHHHHHHHHhcc
Q 028034 53 LAVAYIPLTILA-VPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRS 130 (215)
Q Consensus 53 ~~~~~~~~~~~~-iP~~~l~~~~g~~~g~~~g~l~~~~g~~lg~~i~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (215)
++.+-++..++| +|.+++.+++.+. ++| ++++.++++.+++.+....+..+++
T Consensus 13 ~~~LG~iGi~LPlLPTTPFlLLAa~c-----------------------faR--sSpR~~~WL~~h~~fGp~i~~w~~~ 66 (125)
T PRK10527 13 AVVLGTLGVVLPLLPTTPFILLAAWC-----------------------FAR--SSPRFHAWLLYRSWFGSYLRHWQQH 66 (125)
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHH-----------------------HHc--CCHHHHHHHHcCchhhHHHHHHHHC
Confidence 344445556666 8999888876543 334 3566777887777777666665554
No 18
>PRK13661 hypothetical protein; Provisional
Probab=71.31 E-value=7.9 Score=30.57 Aligned_cols=33 Identities=30% Similarity=0.259 Sum_probs=28.6
Q ss_pred ChHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 028034 66 PASVLTLGGGYLFGLPVGFVADSIGATIGAGAA 98 (215)
Q Consensus 66 P~~~l~~~~g~~~g~~~g~l~~~~g~~lg~~i~ 98 (215)
|++......+..|||..|+++..+|..++|.+.
T Consensus 39 ~~~~~i~l~a~lfGp~~G~lvg~ig~~L~dll~ 71 (182)
T PRK13661 39 LAYAFLALFAVLFGPVVGFLVGFIGHALKDFIA 71 (182)
T ss_pred eHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHc
Confidence 456778889999999999999999999999873
No 19
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=70.94 E-value=56 Score=26.62 Aligned_cols=86 Identities=21% Similarity=0.188 Sum_probs=63.1
Q ss_pred HHHhcchHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHhhccCChHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 028034 24 ACFTLPVEKILKDFLTWVDQDLGPWG-PLVLAVAYIPLTILAVPASV-LTLGGGYLFGLPVGFVADSIGATIGAGAAFLL 101 (215)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~iP~~~-l~~~~g~~~g~~~g~l~~~~g~~lg~~i~y~l 101 (215)
.......++.+++..+-.. ..++.. .++..+.......+..+-+. --...|...|.....+-+..|+++.=.++=..
T Consensus 28 ~~~~~~~~~~l~~~i~~~g-~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~ 106 (223)
T COG0398 28 LLVLLLDPETLREWIQAYG-ALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYL 106 (223)
T ss_pred HHHhccCHHHHHHHHHHcC-chHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455565566666666655 455555 77888888888887766554 45668899999999999999999999999999
Q ss_pred HHHhCHHHH
Q 028034 102 GRTIGKPFV 110 (215)
Q Consensus 102 gr~~~~~~~ 110 (215)
+|...++..
T Consensus 107 gr~~~~~~~ 115 (223)
T COG0398 107 GRDWVLKFV 115 (223)
T ss_pred hHHHHHHHh
Confidence 987654443
No 20
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=69.44 E-value=20 Score=28.72 Aligned_cols=70 Identities=19% Similarity=0.126 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccCChHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHhCHH
Q 028034 31 EKILKDFLTWVDQDLGPWGPLVLAVAYIPLTILAVPASVLTLGGGYL-FGLPVGFVADSIGATIGAGAAFLLGRTIGKP 108 (215)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~l~~~~g~~-~g~~~g~l~~~~g~~lg~~i~y~lgr~~~~~ 108 (215)
++.+++..++.+ ++|.+..++.=.+..+.++. .+.+|+. +....=.+.+.+|+.+=+.+....|..+|+.
T Consensus 97 ~~~l~~a~~~f~-r~G~~~vf~~RFip~vRt~i-------p~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~~ 167 (208)
T COG0586 97 RKKLDKAELLFE-RHGLFAIFLGRFIPGVRTLV-------PIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEV 167 (208)
T ss_pred HHHHHHHHHHHH-HcCchhhhhhcccchhHhhh-------hHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 556788888888 78886654432332233333 3355655 7777778889999999999999999888764
No 21
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=69.28 E-value=3.3 Score=35.09 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHhcCChHH
Q 028034 85 VADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQF 120 (215)
Q Consensus 85 l~~~~g~~lg~~i~y~lgr~~~~~~~~~~~~~~~~~ 120 (215)
+...+....+|+.+|+.||.+||+.+-.+.+-++++
T Consensus 155 l~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTw 190 (285)
T PRK11624 155 LYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTW 190 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCch
Confidence 334445778999999999999986544444433343
No 22
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=67.27 E-value=16 Score=23.68 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCHHHH
Q 028034 86 ADSIGATIGAGAAFLLGRTIGKPFV 110 (215)
Q Consensus 86 ~~~~g~~lg~~i~y~lgr~~~~~~~ 110 (215)
+..++..+|..++|+++|+.-++-+
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k~l 26 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEKQL 26 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888999999998754433
No 23
>PRK10847 hypothetical protein; Provisional
Probab=65.31 E-value=33 Score=27.71 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=44.9
Q ss_pred HHHHHHhcchHHH---HHHHh-------hcCCCChhhHHHHhhcc------CCChhhHHHHHHHhHHHHHHHHHHHhhhh
Q 028034 122 SVALAIQRSGFKI---VLLLR-------LVPLLPFNMLNYLLSVT------PVPLLEYMLASWIGMMPITLALVYVGTTL 185 (215)
Q Consensus 122 ~~~~~~~~~g~~~---i~~~r-------~~P~~p~~~~~~~~G~~------~~~~~~f~~~~~ig~~~~~~~~~~~G~~~ 185 (215)
.+++.++++|.+. +++.- ..|.+|.+..-..+|.. .+++..-+..+.+|......+..++|+..
T Consensus 17 ~~~~~~~~~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~ 96 (219)
T PRK10847 17 HLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLF 96 (219)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345567776442 32222 24778988888877743 26677778888899999999999999876
Q ss_pred c
Q 028034 186 K 186 (215)
Q Consensus 186 ~ 186 (215)
+
T Consensus 97 G 97 (219)
T PRK10847 97 G 97 (219)
T ss_pred C
Confidence 4
No 24
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=64.93 E-value=4.6 Score=33.74 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHH
Q 028034 84 FVADSIGATIGAGAAFLLGRTIGKPF 109 (215)
Q Consensus 84 ~l~~~~g~~lg~~i~y~lgr~~~~~~ 109 (215)
.+...++...+|+.+|+.||++|++.
T Consensus 136 ~l~l~~~vw~~Di~Ayf~Gr~fGk~k 161 (265)
T COG0575 136 LLLLFLGVWAGDIGAYFVGRRFGKHK 161 (265)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcCCCC
Confidence 44566778999999999999999864
No 25
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=62.95 E-value=13 Score=27.51 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCHH
Q 028034 87 DSIGATIGAGAAFLLGRTIGKP 108 (215)
Q Consensus 87 ~~~g~~lg~~i~y~lgr~~~~~ 108 (215)
+++|.++|..++|+++|...+.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4667888889999999887543
No 26
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=62.44 E-value=52 Score=23.20 Aligned_cols=43 Identities=26% Similarity=0.196 Sum_probs=29.1
Q ss_pred HhhccCChHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHH
Q 028034 60 LTILAVPASVLTLGGGYL-FGLPVGFVADSIGATIGAGAAFLLG 102 (215)
Q Consensus 60 ~~~~~iP~~~l~~~~g~~-~g~~~g~l~~~~g~~lg~~i~y~lg 102 (215)
...+.+|.++....+|.. .....-++.+.+|...-+.+.-.+|
T Consensus 78 ~~~P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G 121 (123)
T PF09335_consen 78 RFIPGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLG 121 (123)
T ss_pred HHHHHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333447999988888876 5566666666777776666655554
No 27
>COG1238 Predicted membrane protein [Function unknown]
Probab=61.99 E-value=44 Score=25.85 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=44.7
Q ss_pred hhcCCCChhhHHHHhhccCCChhhHHHHHHHhHHHHHHHHHHHhhhhcccccc
Q 028034 139 RLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDV 191 (215)
Q Consensus 139 r~~P~~p~~~~~~~~G~~~~~~~~f~~~~~ig~~~~~~~~~~~G~~~~~~~~~ 191 (215)
-+.| +|.++.-...-+.+.+...+...+.+|......+-.++|+...|....
T Consensus 31 t~lP-~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 31 TLLP-VPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred HhcC-CChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 3458 888888888888889999999999999999999999999988766544
No 28
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=61.87 E-value=81 Score=25.17 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcchHHHH
Q 028034 119 QFRSVALAIQRSGFKIV 135 (215)
Q Consensus 119 ~~~~~~~~~~~~g~~~i 135 (215)
.++|+++++++|+-...
T Consensus 181 ~l~r~~~wl~~~~~~i~ 197 (214)
T PF11139_consen 181 WLERLRSWLRRHSRQIL 197 (214)
T ss_pred HHHHHHHHHHHccHHHH
Confidence 56677778887764433
No 29
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=52.50 E-value=1.6e+02 Score=25.82 Aligned_cols=61 Identities=11% Similarity=-0.112 Sum_probs=45.1
Q ss_pred cCCChHHHHHHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHH
Q 028034 44 DLGPWGPLVLAVAYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAGAA-FLLGRT 104 (215)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~iP~~~l~~~~g~~~g~~~g~l~~~~g~~lg~~i~-y~lgr~ 104 (215)
+++|...-=|.-.....+..|=|........|+..+-+.|.+++.+|..+=+.+. +.+...
T Consensus 235 ~~~Wlt~~eF~~~~alaq~~PGP~~~~a~~iG~~~~G~~Ga~~A~~g~~lP~~lli~~l~~~ 296 (368)
T TIGR00937 235 RGNWLTAGQFLDGIALAQITPGPLFITATFIGYLVAGFPGAIAATVAIFLPSFLLVLGVLPY 296 (368)
T ss_pred ccCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666667667777888887877777778888888899999999988777544 444443
No 30
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.93 E-value=67 Score=21.20 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCH
Q 028034 81 PVGFVADSIGATIGAGAAFLLGRTIGK 107 (215)
Q Consensus 81 ~~g~l~~~~g~~lg~~i~y~lgr~~~~ 107 (215)
+.+.+...++...|-..+|+++|+.-+
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~~~ 30 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQMK 30 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777888999987643
No 31
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.81 E-value=44 Score=24.42 Aligned_cols=51 Identities=18% Similarity=0.123 Sum_probs=31.4
Q ss_pred HHHHHhhcc-CChHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHhcCChHHHHHHHHHhcch
Q 028034 56 AYIPLTILA-VPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSG 131 (215)
Q Consensus 56 ~~~~~~~~~-iP~~~l~~~~g~~~g~~~g~l~~~~g~~lg~~i~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~g 131 (215)
+-++..++| +|.+++.+++... +.| ++++.++++.+++.+.+..+..+|++
T Consensus 16 LGIiGifLPlLPTTPFlLLaa~c-----------------------FaR--sSpRf~~WLl~~~~fg~~v~~~~e~~ 67 (119)
T COG2832 16 LGIIGIFLPLLPTTPFLLLAAAC-----------------------FAR--SSPRFHAWLLRHKYFGPYVRDWREGG 67 (119)
T ss_pred HHHHHhcCcccCCcHHHHHHHHH-----------------------HHc--CCcHHHHHHHcCchhhHHHHHHHHcC
Confidence 334555666 7888887775433 233 24556777777777776666666554
No 32
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=48.96 E-value=1.9e+02 Score=25.63 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=25.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhcCCC
Q 028034 5 WGSALRITLLILLVAAVVTACFT-LPVEKILKDFLTWVDQDLGP 47 (215)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 47 (215)
++|++..+..++++..++...++ .+.+.-.+.+..|+- -+|.
T Consensus 238 ~~k~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~W~l-~ng~ 280 (380)
T TIGR00261 238 FSKVLSYLIAISIILLFVMISFYLNGFEFLYKNLKLWIL-SNGI 280 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HHhH
Confidence 34666655666666666533443 445666788888877 4554
No 33
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=48.27 E-value=1.2e+02 Score=23.18 Aligned_cols=72 Identities=15% Similarity=0.055 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhccCChHH-HHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHh
Q 028034 34 LKDFLTWVDQDLGPWGPLVLAVAYIPLTILAVPASV-LTLGGGYLFGLPVGFVADSIGATIGAG-AAFLLGRTI 105 (215)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~-l~~~~g~~~g~~~g~l~~~~g~~lg~~-i~y~lgr~~ 105 (215)
+..+.+.+.|+++|...-=|.-....++..|=|... +....|+..+-..|.+++.+|..+=+. +...+++.+
T Consensus 24 i~~~~~~~V~~~~wlt~~~f~~~~al~q~~PGP~~~n~a~~iG~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~~ 97 (169)
T PF02417_consen 24 IPLIQREFVERRGWLTEEEFLEGLALAQALPGPIAINLATFIGYRLAGFLGAIVATIGFILPSFLLILLLSPLY 97 (169)
T ss_pred HHHHHHHHhHccCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333356666666666677778888888777 888888888878888888888766555 455555444
No 34
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=46.41 E-value=29 Score=26.36 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=23.5
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 028034 67 ASVLTLGGGYLFGLPVGFVADSIGATIGAGA 97 (215)
Q Consensus 67 ~~~l~~~~g~~~g~~~g~l~~~~g~~lg~~i 97 (215)
+.+....+|..+||+.|.+...+.+.++...
T Consensus 31 ~~i~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 31 SFIPIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp CCHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999888877666665
No 35
>COG4720 Predicted membrane protein [Function unknown]
Probab=44.07 E-value=40 Score=26.43 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028034 68 SVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRT 104 (215)
Q Consensus 68 ~~l~~~~g~~~g~~~g~l~~~~g~~lg~~i~y~lgr~ 104 (215)
+.....+..+||+..|.++..+|..+-|.++++=..+
T Consensus 41 da~i~las~lfGs~~G~lvg~iG~al~Dll~gy~~W~ 77 (177)
T COG4720 41 DAGIALASFLFGSRAGALVGGLGHALKDLLSGYPSWM 77 (177)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHhcCCccHH
Confidence 5677778889999999999999999999888554433
No 36
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=43.72 E-value=83 Score=19.90 Aligned_cols=10 Identities=0% Similarity=0.358 Sum_probs=4.5
Q ss_pred HHHHHHHHHh
Q 028034 119 QFRSVALAIQ 128 (215)
Q Consensus 119 ~~~~~~~~~~ 128 (215)
+.++.++..+
T Consensus 56 ~l~~le~e~~ 65 (68)
T PF06305_consen 56 ELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 37
>PLN02953 phosphatidate cytidylyltransferase
Probab=41.01 E-value=18 Score=32.12 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHH
Q 028034 84 FVADSIGATIGAGAAFLLGRTIGKPFVI 111 (215)
Q Consensus 84 ~l~~~~g~~lg~~i~y~lgr~~~~~~~~ 111 (215)
+++..+....+|+.+|+.||.+||..+.
T Consensus 271 ~l~~~~~vw~~Di~AY~~G~~fGk~kl~ 298 (403)
T PLN02953 271 TLISFSGVIATDTFAFLGGKAFGRTPLT 298 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4455667788999999999999986553
No 38
>KOG1109 consensus Vacuole membrane protein VMP1 [General function prediction only]
Probab=39.13 E-value=15 Score=32.37 Aligned_cols=90 Identities=20% Similarity=0.290 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCH----HHHHHH--hcC---------ChHHHH----HHHHHhcchHHHHHHHhhcCCCC
Q 028034 85 VADSIGATIGAGAAFLLGRTIGK----PFVISK--LKD---------YPQFRS----VALAIQRSGFKIVLLLRLVPLLP 145 (215)
Q Consensus 85 l~~~~g~~lg~~i~y~lgr~~~~----~~~~~~--~~~---------~~~~~~----~~~~~~~~g~~~i~~~r~~P~~p 145 (215)
++--.|..+|.+-.|+..|...- +..+.. .+. .++..| +++..+|-|+..+++..-+|---
T Consensus 213 ilwg~gtalgElppyFmaraarlsg~~p~dee~~ef~~g~~~d~e~~~~r~~r~k~wv~~~v~~lgffgIli~aSIpnPl 292 (440)
T KOG1109|consen 213 ILWGAGTALGELPPYFMARAARLSGVEPDDEEYTEFEEGLNWDAEIALSRVHRAKSWVENQVQRLGFFGILICASIPNPL 292 (440)
T ss_pred hhhccccccccCchHHHHHHHHhcCCCCcHHHhhhhhhhhhhhHHHHhhHHHHhHHHHHHHhhhcccceeEEEecCCCcc
Confidence 33456789999999999987621 111110 000 012223 33444555788777777777555
Q ss_pred hhhHHHHhhccCCChhhHHHHHHHhHHHH
Q 028034 146 FNMLNYLLSVTPVPLLEYMLASWIGMMPI 174 (215)
Q Consensus 146 ~~~~~~~~G~~~~~~~~f~~~~~ig~~~~ 174 (215)
+|.....+|..-.|++.|+.++++|+..-
T Consensus 293 fdlaGitcghflvpfw~ffGaTLigKaii 321 (440)
T KOG1109|consen 293 FDLAGITCGHFLVPFWTFFGATLIGKAII 321 (440)
T ss_pred hhhcccccccccchHHHHhhHHHHHHHHH
Confidence 78999999999999999999999998653
No 39
>COG2839 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.94 E-value=1.8e+02 Score=22.32 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=14.3
Q ss_pred HHHhhcc-CChHHHHHHHHhhhh
Q 028034 58 IPLTILA-VPASVLTLGGGYLFG 79 (215)
Q Consensus 58 ~~~~~~~-iP~~~l~~~~g~~~g 79 (215)
.+....| +|++.++.++-..++
T Consensus 17 ~vGlv~PaiPs~lli~~G~l~y~ 39 (160)
T COG2839 17 FVGLVYPAIPSTLLIFAGFLAYG 39 (160)
T ss_pred HHhhhhcccchHHHHHHHHHHHH
Confidence 3444445 899988888755544
No 40
>COG4732 Predicted membrane protein [Function unknown]
Probab=38.82 E-value=51 Score=25.28 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHhc
Q 028034 92 TIGAGAAFLLGRTIGKPFVISKLK 115 (215)
Q Consensus 92 ~lg~~i~y~lgr~~~~~~~~~~~~ 115 (215)
.+|+.++|+.-+.+.|.-+-||+.
T Consensus 145 liGt~isf~alvaL~k~g~~~rl~ 168 (177)
T COG4732 145 LIGTIISFFALVALIKQGFFKRLQ 168 (177)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhc
Confidence 556666666665554443333343
No 41
>PRK11469 hypothetical protein; Provisional
Probab=38.51 E-value=2e+02 Score=22.72 Aligned_cols=110 Identities=16% Similarity=0.058 Sum_probs=54.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHhcCChHHHHHHHHHhcchH-HHHHHHhhcCCCChhh
Q 028034 70 LTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGF-KIVLLLRLVPLLPFNM 148 (215)
Q Consensus 70 l~~~~g~~~g~~~g~l~~~~g~~lg~~i~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~i~~~r~~P~~p~~~ 148 (215)
++...|+..|-...-...-....+|..+-..+|-+.-.+..+++-++ ++ +..++... ..+.++-.+- +-.-.
T Consensus 49 ~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~e~~~~~~~~-~~-----~~~~~~~~~~~l~LaiAtS-iDAla 121 (188)
T PRK11469 49 LTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDE-DE-----EPRRRHGFWLLVTTAIATS-LDAMA 121 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cc-----ccccCCCHHHHHHHHHHHH-HHHHH
Confidence 34445555554444444445567777777777765443333221110 00 00122232 2334443333 43335
Q ss_pred HHHHhhccCCChhhHHHHHHHhHHHHHHHHHHHhhhhc
Q 028034 149 LNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLK 186 (215)
Q Consensus 149 ~~~~~G~~~~~~~~f~~~~~ig~~~~~~~~~~~G~~~~ 186 (215)
+.+.+|..+.+.........+.+..-+..-.++|+.++
T Consensus 122 vGi~~~~~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g 159 (188)
T PRK11469 122 VGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIG 159 (188)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777887666666665555555555566666544
No 42
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.05 E-value=1.1e+02 Score=22.72 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCH
Q 028034 82 VGFVADSIGATIGAGAAFLLGRTIGK 107 (215)
Q Consensus 82 ~g~l~~~~g~~lg~~i~y~lgr~~~~ 107 (215)
..+.+..+|-++|-.++|.+.|...+
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 34677788899999999999987644
No 43
>PF14163 SieB: Superinfection exclusion protein B
Probab=36.17 E-value=1.8e+02 Score=21.72 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=15.4
Q ss_pred hhccCChHHHHHHHH----hhhhhhHHHHHHHHHH
Q 028034 61 TILAVPASVLTLGGG----YLFGLPVGFVADSIGA 91 (215)
Q Consensus 61 ~~~~iP~~~l~~~~g----~~~g~~~g~l~~~~g~ 91 (215)
.++..|.+.+....- ..++++.+.+.....+
T Consensus 11 ~llf~P~~~~~~l~l~~~~~~y~~~i~~~fl~s~s 45 (151)
T PF14163_consen 11 LLLFLPESLLEWLNLDKFEIKYQPWIGLIFLFSVS 45 (151)
T ss_pred HHHHCCHHHHHHhCcchHHHhcchHHHHHHHHHHH
Confidence 334567666554422 2356666655444333
No 44
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=35.37 E-value=56 Score=29.60 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 028034 68 SVLTLGGGYLFGLPVGFVADSIGATIG 94 (215)
Q Consensus 68 ~~l~~~~g~~~g~~~g~l~~~~g~~lg 94 (215)
.+-...+|++|||++|.+...++..+|
T Consensus 99 fIpi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 99 LILVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 456778999999999999999998888
No 45
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=34.20 E-value=98 Score=19.61 Aligned_cols=14 Identities=0% Similarity=0.147 Sum_probs=9.9
Q ss_pred ChHHHHHHHHHhcc
Q 028034 117 YPQFRSVALAIQRS 130 (215)
Q Consensus 117 ~~~~~~~~~~~~~~ 130 (215)
++|++|+.+.+||+
T Consensus 45 eqKLDrIIeLLEK~ 58 (58)
T PF13314_consen 45 EQKLDRIIELLEKD 58 (58)
T ss_pred HHHHHHHHHHHccC
Confidence 35778888877763
No 46
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=33.29 E-value=1.6e+02 Score=21.60 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCHH
Q 028034 84 FVADSIGATIGAGAAFLLGRTIGKP 108 (215)
Q Consensus 84 ~l~~~~g~~lg~~i~y~lgr~~~~~ 108 (215)
-..+.+++.++-.++|.+.|++.++
T Consensus 96 e~~~~l~~l~~l~~~~~~~~~~~~~ 120 (135)
T PF04246_consen 96 ELWAILGGLLGLALGFLILRLFDRR 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566777888888899999887654
No 47
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=32.63 E-value=2.3e+02 Score=21.70 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh------ccCChHHH-HHHHHhhhhhhHHHHHHHHHH-----HHHHHH
Q 028034 30 VEKILKDFLTWVDQDLGPWGPLVLAVAYIPLTI------LAVPASVL-TLGGGYLFGLPVGFVADSIGA-----TIGAGA 97 (215)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~------~~iP~~~l-~~~~g~~~g~~~g~l~~~~g~-----~lg~~i 97 (215)
.++.+|-+..-+- -++|+...-+.....+.. +.+|+++. ...+|..|-...-...+.+|. .+|+.+
T Consensus 30 ~QH~iNviaaVlL--GP~ya~~~Af~~sliR~~lg~Gt~lAfPGsm~GA~laGllyr~~~k~~~a~lGEviGTGiIGal~ 107 (150)
T PF09512_consen 30 MQHMINVIAAVLL--GPWYAVAMAFITSLIRNLLGTGTLLAFPGSMFGALLAGLLYRKTKKLWAAALGEVIGTGIIGALL 107 (150)
T ss_pred HHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHhCCCCHHHhccchHHHHHHHHHHHHhCcchHHHHHHHHhhHHHHHHH
Confidence 3444444444333 234455554455554433 33676654 445666655333333333332 556666
Q ss_pred HHHHHHHh
Q 028034 98 AFLLGRTI 105 (215)
Q Consensus 98 ~y~lgr~~ 105 (215)
+|-+.+++
T Consensus 108 sypva~~~ 115 (150)
T PF09512_consen 108 SYPVAKLF 115 (150)
T ss_pred HHHHHHHH
Confidence 66666654
No 48
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=30.95 E-value=2e+02 Score=21.94 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCHH
Q 028034 85 VADSIGATIGAGAAFLLGRTIGKP 108 (215)
Q Consensus 85 l~~~~g~~lg~~i~y~lgr~~~~~ 108 (215)
...++++++|...+|++.|++.|+
T Consensus 104 ~~~~~~~~lg~~l~fl~~r~ysRk 127 (150)
T COG3086 104 LIVIFGAFLGLALGFLLARRYSRK 127 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677899999999999988654
No 49
>PLN02594 phosphatidate cytidylyltransferase
Probab=30.57 E-value=38 Score=29.53 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Q 028034 79 GLPVGFVADSIGATIGAGAAFLLGRTIGKPFVI 111 (215)
Q Consensus 79 g~~~g~l~~~~g~~lg~~i~y~lgr~~~~~~~~ 111 (215)
|..+- ++........|+.+|..||.+||..+-
T Consensus 123 G~~w~-~l~~~lV~~nDi~AY~~G~~fGk~kL~ 154 (342)
T PLN02594 123 GIFWF-LLPASLIVINDIAAYLFGFFFGRTPLI 154 (342)
T ss_pred cHHHH-HHHHHHHHHHhHHHHHHHHHhcCCCCC
Confidence 44343 333445788999999999999985433
No 50
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=30.19 E-value=3.3e+02 Score=22.82 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=52.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHhcCChHHHHHHHHHhcchHHHHHHHhhcCC---CChhhHHHHhh
Q 028034 78 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIVLLLRLVPL---LPFNMLNYLLS 154 (215)
Q Consensus 78 ~g~~~g~l~~~~g~~lg~~i~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~r~~P~---~p~~~~~~~~G 154 (215)
+||..-+++..+-...-....|..|++.|++.+.+. + ....+++.+...==|.. .++-+++. +.. ...+..|
T Consensus 133 lGpil~~~~~~~~~~~~r~~~~~~GY~~G~~~i~~l-~-~~~~~~i~~~asilGl~--vvGal~as~V~v~~-~l~~~~g 207 (264)
T PF03613_consen 133 LGPILFLLLYNIIHFFIRYFGFFLGYKLGTSFITKL-Q-SGLLQKITEAASILGLM--VVGALIASYVNVST-PLTITIG 207 (264)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hhHHHHHHHHHHHHHHH--HHHHHHHHeEEEee-eEEEecC
Confidence 455544444444456666777888888888887765 3 35666665555443432 33333221 222 2334455
Q ss_pred ccCCChhhHHHHHHHhHHHHHH
Q 028034 155 VTPVPLLEYMLASWIGMMPITL 176 (215)
Q Consensus 155 ~~~~~~~~f~~~~~ig~~~~~~ 176 (215)
-..++.-..+=..+.+.+|-.+
T Consensus 208 ~~~~~lQ~~lD~I~P~lLpl~~ 229 (264)
T PF03613_consen 208 GVTISLQEILDGIMPGLLPLLL 229 (264)
T ss_pred CceeeHHHhHHhHHhhHHHHHH
Confidence 5567777766666666665443
No 51
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.15 E-value=2.2e+02 Score=20.54 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHhcCChHHHHHHHHHhcch
Q 028034 85 VADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSG 131 (215)
Q Consensus 85 l~~~~g~~lg~~i~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~g 131 (215)
.....++.+|..++-++|.++-++..+.|-+ +=-+++++.+.++++
T Consensus 49 ~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe-~yl~r~l~~~~~~~~ 94 (111)
T TIGR03750 49 ALIPTGALLGPILVVLIGGKLLARLKRGKPE-GYLYRKLEWKLARLG 94 (111)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHcCCCc-hHHHHHHHHHHHHcC
Confidence 3344556666666666664433221111111 113556666666655
No 52
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=28.71 E-value=97 Score=20.02 Aligned_cols=45 Identities=16% Similarity=0.453 Sum_probs=33.9
Q ss_pred hhhHHHHhhccCCChhhHHHHHHHhHHHHHHHHHHHhhhhccccc
Q 028034 146 FNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSD 190 (215)
Q Consensus 146 ~~~~~~~~G~~~~~~~~f~~~~~ig~~~~~~~~~~~G~~~~~~~~ 190 (215)
+|+.++.+|+.-.+...|......|-+.-.+.+...|...+-.++
T Consensus 14 ~DIi~Fila~i~i~it~F~~n~~~g~i~i~I~l~l~G~isE~i~~ 58 (63)
T PF06341_consen 14 FDIILFILAMIFINITAFLINQIAGLISIGITLFLAGLISEFISK 58 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367788888888888888888888888778888888876544443
No 53
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=28.46 E-value=2.4e+02 Score=20.65 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=6.9
Q ss_pred HHHHHHHHhcch
Q 028034 120 FRSVALAIQRSG 131 (215)
Q Consensus 120 ~~~~~~~~~~~g 131 (215)
+++++..+++++
T Consensus 86 ~r~l~~~l~~~g 97 (121)
T PF11990_consen 86 YRRLQWRLARRG 97 (121)
T ss_pred HHHHHHHHHHhc
Confidence 455566666654
No 54
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=27.50 E-value=2.3e+02 Score=22.06 Aligned_cols=58 Identities=22% Similarity=0.371 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-HHHHHHH-----hcC-----ChHHHHHHHHHhcchHHHHHHHhhc
Q 028034 84 FVADSIGATIGAGAAFLLGRTIG-KPFVISK-----LKD-----YPQFRSVALAIQRSGFKIVLLLRLV 141 (215)
Q Consensus 84 ~l~~~~g~~lg~~i~y~lgr~~~-~~~~~~~-----~~~-----~~~~~~~~~~~~~~g~~~i~~~r~~ 141 (215)
+-.+.+|.++|..++-.+-+.+. +|++.+- +++ .++.+++++..+++...+..+.+|-
T Consensus 49 f~~NllGVil~~~~~~~~l~~~k~~p~m~Ev~YvW~LKq~ln~I~rkl~~ik~aa~~~d~~Al~iL~FY 117 (165)
T PF11286_consen 49 FHWNLLGVILGLLLTSALLRQLKTHPFMTEVYYVWQLKQLLNKIYRKLHKIKAAAEQGDPDALKILRFY 117 (165)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45667788888887777777664 4554421 111 3567777777777776666666653
No 55
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=27.17 E-value=1.5e+02 Score=22.47 Aligned_cols=34 Identities=6% Similarity=0.230 Sum_probs=19.5
Q ss_pred CCCchHhHHHHHHHHHHHHHHHHHHHhcchHHHH
Q 028034 1 MAFTWGSALRITLLILLVAAVVTACFTLPVEKIL 34 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 34 (215)
|.++|...+..++-++++..++--+.+.|..+.+
T Consensus 1 M~~~~~~~~~~~inF~il~~iL~~f~~kpi~~~l 34 (159)
T PRK13461 1 MEINIPTIIATIINFIILLLILKHFFFDKIKAVI 34 (159)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 7888876655544444444444444556665555
No 56
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=26.66 E-value=1.9e+02 Score=22.01 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCHH
Q 028034 86 ADSIGATIGAGAAFLLGRTIGKP 108 (215)
Q Consensus 86 ~~~~g~~lg~~i~y~lgr~~~~~ 108 (215)
...++..+|-.++|.+.|++.++
T Consensus 105 ~~~~~~~~g~~~g~~~~r~~~~~ 127 (154)
T PRK10862 105 AALCGALLGGVGGFLLARGLSRK 127 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777778888888876543
No 57
>PRK11677 hypothetical protein; Provisional
Probab=26.43 E-value=1.5e+02 Score=22.18 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 028034 80 LPVGFVADSIGATIGAGAAFLLGRTIG 106 (215)
Q Consensus 80 ~~~g~l~~~~g~~lg~~i~y~lgr~~~ 106 (215)
+..+++...+|.++|..++.+..+...
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~ 29 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLR 29 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 445566778888999999998776653
No 58
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=25.72 E-value=2.5e+02 Score=19.92 Aligned_cols=26 Identities=19% Similarity=0.022 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028034 79 GLPVGFVADSIGATIGAGAAFLLGRT 104 (215)
Q Consensus 79 g~~~g~l~~~~g~~lg~~i~y~lgr~ 104 (215)
+++.++.+......+.+.+.+..+++
T Consensus 70 ~~~~a~liv~~~~l~la~i~~~~~~~ 95 (121)
T PF07332_consen 70 PPWLAFLIVAGLYLLLALILLLIGRR 95 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667766666666666666666654
No 59
>PRK03001 M48 family peptidase; Provisional
Probab=25.22 E-value=1.7e+02 Score=24.59 Aligned_cols=33 Identities=12% Similarity=-0.002 Sum_probs=15.8
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 028034 74 GGYLFGLPVGFVADSIGATIGAGAAFLLGRTIG 106 (215)
Q Consensus 74 ~g~~~g~~~g~l~~~~g~~lg~~i~y~lgr~~~ 106 (215)
.|+.++...++++.++....-+.+.|+++-+.-
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 52 (283)
T PRK03001 20 IGGMIGGSQGMLIALLFALGMNFFSYWFSDKMV 52 (283)
T ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334443333344444444555566666664443
No 60
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=24.69 E-value=87 Score=25.30 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHH
Q 028034 82 VGFVADSIGATIGAGAAFLLGRTIGKP 108 (215)
Q Consensus 82 ~g~l~~~~g~~lg~~i~y~lgr~~~~~ 108 (215)
.-..+++.....||.++=.+||++||.
T Consensus 114 ~~~~~~I~~l~~GD~lAsiiG~~~G~~ 140 (216)
T COG0170 114 EVAIAGILVLALGDGLASIIGKRYGRH 140 (216)
T ss_pred HHHHHHHHHHHHhhHHHHHhCcccCcc
Confidence 555566677788999999999999985
No 61
>PRK03072 heat shock protein HtpX; Provisional
Probab=24.35 E-value=2.3e+02 Score=23.89 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=15.8
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028034 74 GGYLFGLPVGFVADSIGATIGAGAAFLLGRTI 105 (215)
Q Consensus 74 ~g~~~g~~~g~l~~~~g~~lg~~i~y~lgr~~ 105 (215)
.|+.+| ..+.+...+-......++|+.+.+.
T Consensus 24 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~ 54 (288)
T PRK03072 24 IGALFG-RTGLGIAVLIAVGMNAYVYWNSDKL 54 (288)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344444 2344444444455566777776554
No 62
>PRK14219 camphor resistance protein CrcB; Provisional
Probab=23.94 E-value=1.8e+02 Score=21.51 Aligned_cols=25 Identities=20% Similarity=0.052 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCHH
Q 028034 84 FVADSIGATIGAGAAFLLGRTIGKP 108 (215)
Q Consensus 84 ~l~~~~g~~lg~~i~y~lgr~~~~~ 108 (215)
.......+.+++.+..++|.+.++.
T Consensus 98 a~~y~~~sl~~gl~a~~lG~~l~~~ 122 (132)
T PRK14219 98 AFLYVSCSILGGLIMSGLGYTLGDF 122 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666677776666666553
No 63
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=23.74 E-value=2.2e+02 Score=21.82 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=36.2
Q ss_pred HHhcchHH-HHHHHhhcCCCChhh-HHHHhhccCCChhhHHHHHHHhHHHHHHHHHHHhhhhcccc
Q 028034 126 AIQRSGFK-IVLLLRLVPLLPFNM-LNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLS 189 (215)
Q Consensus 126 ~~~~~g~~-~i~~~r~~P~~p~~~-~~~~~G~~~~~~~~f~~~~~ig~~~~~~~~~~~G~~~~~~~ 189 (215)
+++++.+. .+.++..+| -|... .....|.-.-.+.-=+.+...-..|...+....+...++..
T Consensus 37 wlt~~~f~~~~al~q~~P-GP~~~n~a~~iG~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~~~~~~ 101 (169)
T PF02417_consen 37 WLTEEEFLEGLALAQALP-GPIAINLATFIGYRLAGFLGAIVATIGFILPSFLLILLLSPLYSRFR 101 (169)
T ss_pred CCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444443 678899999 67533 33334444333444445555556777777777777665543
No 64
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=22.73 E-value=5.6e+02 Score=23.79 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=37.7
Q ss_pred HHHHHhcchHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHhhccCChH--------HHHHHHHhhhhhhHHHHHHHHH
Q 028034 22 VTACFTLPVEKILKDFLTWVDQDLGPWG-PLVLAVAYIPLTILAVPAS--------VLTLGGGYLFGLPVGFVADSIG 90 (215)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~iP~~--------~l~~~~g~~~g~~~g~l~~~~g 90 (215)
+...|.....+.+..+.+.-.+..+.+. ..+|-+..+..+-++++-. +-..++|.+.||+.|+++..+|
T Consensus 16 li~a~~l~k~~lf~~lm~~~~~~~~k~~~~~iFSlf~im~ty~Gl~i~dsiaNtR~igv~~gGllgGP~Vg~~vGl~~ 93 (557)
T COG3275 16 LIIAFFLSKTPLFIPLMQVTARLPHKLALYIIFSLFCIMGTYFGLHIDDSIANTRAIGVVMGGLLGGPVVGIIVGLTA 93 (557)
T ss_pred HHHHHHHhccHHHHHHHHhhcCCcceeehHHHHHHHHHhhceeccchhhhHHhhHHHHHHhcccccCChhhhhhhhhh
Confidence 3344444444455555555443333444 3344444445555666631 2356678888999988765544
No 65
>PRK14400 membrane protein; Provisional
Probab=22.24 E-value=2.2e+02 Score=22.90 Aligned_cols=45 Identities=24% Similarity=0.049 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHhcCChHHHHHHHHH
Q 028034 83 GFVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAI 127 (215)
Q Consensus 83 g~l~~~~g~~lg~~-i~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~ 127 (215)
+.++..++-.+||. .+|.++|.+.+..+++.=.+|.-....-|..
T Consensus 7 ~~~~~i~~YllGsip~~~~i~k~~~g~DiR~~GSgN~GaTNv~R~~ 52 (201)
T PRK14400 7 GAVLVAAGYLAGSIPFGVVLGRLVLGVDVRTVGSGNIGATNVARAG 52 (201)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhCCCCccccCCCCchHHHHHHHh
Confidence 44455667778886 8899999875443443323343333333333
No 66
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=22.10 E-value=2.6e+02 Score=18.95 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=21.2
Q ss_pred HHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccCChHHHHHH
Q 028034 23 TACFTLPVEKILKDFLTWVDQDLGPWGPLVLAVAYIPLTILAVPASVLTLG 73 (215)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~l~~~ 73 (215)
+.++.+--++.+..-.+-+. .-+....++..........+..|.|.+...
T Consensus 11 ~~~YiF~aPksIr~Tln~i~-~v~~~vlLivla~ls~~ki~q~P~Eifv~~ 60 (81)
T PF11364_consen 11 LLYYIFMAPKSIRGTLNMIG-LVGLVVLLIVLAVLSFIKIFQLPPEIFVGL 60 (81)
T ss_pred HHHHHHHCcHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34444444444544443333 222222222222223334455788876543
No 67
>PRK14407 membrane protein; Provisional
Probab=21.93 E-value=1.6e+02 Score=23.92 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHhcCChHHHHHHHHHhc
Q 028034 83 GFVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAIQR 129 (215)
Q Consensus 83 g~l~~~~g~~lg~~-i~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (215)
|.+...++-.+||. .+|.++|.+.+..+++.=.+|.-.....|.+.|
T Consensus 7 ~~~~l~i~YLlGSIp~g~iv~k~~~g~DiR~~GSGN~GaTNv~R~lG~ 54 (219)
T PRK14407 7 GAVGLAIAYLLGSTPTGYLAGKLLKGIDIREHGSKSTGATNVLRTLGK 54 (219)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhCCCCCCcCCCCCccHHHHHHHHHH
Confidence 44455567778885 889999886443344322234433344444433
No 68
>PRK04897 heat shock protein HtpX; Provisional
Probab=21.71 E-value=2.5e+02 Score=23.79 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028034 82 VGFVADSIGATIGAGAAFLLGRTI 105 (215)
Q Consensus 82 ~g~l~~~~g~~lg~~i~y~lgr~~ 105 (215)
.+.+++.+.....+.+.|+.+.+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~ 64 (298)
T PRK04897 41 GGLIIALIIGVIYALIMIFQSTNV 64 (298)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444555555667777888887665
No 69
>PF06847 Arc_PepC_II: Archaeal Peptidase A24 C-terminus Type II; InterPro: IPR009655 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This region is of unknown function, which is found at the C terminus of archaeal preflagellin aspartic acid signal peptidases []. The preflagellin peptidase is a membrane-bound enzyme topologically similar to its counterpart in the type IV pilus system (prepilin peptidase); the two enzymes utilizing the same catalytic mechanism []. The preflagellin peptidase is required for the removal of the leader peptide from archaeal flagellin []. Preflagellin aspartic acid signal peptidases belong to the MEROPS peptidase family A24B (preflagellin peptidase, clan AD).; GO: 0008233 peptidase activity; PDB: 3S0X_B.
Probab=21.35 E-value=82 Score=21.93 Aligned_cols=16 Identities=19% Similarity=0.490 Sum_probs=8.4
Q ss_pred HhhcCCCChhhHHHHhh
Q 028034 138 LRLVPLLPFNMLNYLLS 154 (215)
Q Consensus 138 ~r~~P~~p~~~~~~~~G 154 (215)
.-.+|++|| ++++++|
T Consensus 67 VWVTpgiPF-lvpIt~G 82 (93)
T PF06847_consen 67 VWVTPGIPF-LVPITAG 82 (93)
T ss_dssp EEE-----T-HHHHHHH
T ss_pred EEEeCCCcC-HHHHHHH
Confidence 346899998 8888887
No 70
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=20.97 E-value=1.8e+02 Score=19.18 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=15.9
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHH
Q 028034 74 GGYLFGLPVGFVADSIGATIGAG 96 (215)
Q Consensus 74 ~g~~~g~~~g~l~~~~g~~lg~~ 96 (215)
.|.+||.+.|.+++.+-..++..
T Consensus 50 IGILYGlVIGlil~~i~~~l~~~ 72 (75)
T COG4064 50 IGILYGLVIGLILCMIYILLGVA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777776666654
No 71
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.84 E-value=1.7e+02 Score=21.55 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=6.4
Q ss_pred HHHHHHHHHhC
Q 028034 96 GAAFLLGRTIG 106 (215)
Q Consensus 96 ~i~y~lgr~~~ 106 (215)
.+.|++.|+-.
T Consensus 83 li~y~irR~~K 93 (122)
T PF01102_consen 83 LISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHS-
T ss_pred HHHHHHHHHhc
Confidence 56777765543
Done!