Query 028034
Match_columns 215
No_of_seqs 110 out of 1216
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 08:00:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p5n_A RIBU, riboflavin uptake 36.9 84 0.0029 23.5 6.1 30 68-97 48-77 (189)
2 4ezc_A UREA transporter 1; mem 32.1 79 0.0027 26.8 5.7 69 32-101 35-105 (384)
3 4dve_A Biotin transporter BIOY 14.8 4E+02 0.014 20.1 6.1 14 172-185 174-187 (198)
4 3sp7_A BCL-2-like protein 1; a 13.2 3.5E+02 0.012 19.9 5.2 19 35-53 139-157 (172)
5 2lbg_A Major prion protein; co 13.0 1.6E+02 0.0056 14.7 2.6 19 87-105 7-25 (27)
6 2hfr_A Fowlicidin-3, cathelici 12.0 96 0.0033 15.2 1.1 17 139-155 2-18 (27)
7 2l9u_A Receptor tyrosine-prote 11.5 2.1E+02 0.0073 15.3 3.2 14 91-104 21-34 (40)
8 2wsw_A BCCT family betaine/car 10.4 3.5E+02 0.012 23.8 5.0 22 30-51 41-62 (509)
9 4ain_A Glycine betaine transpo 9.1 3.7E+02 0.013 23.8 4.7 22 29-50 43-64 (539)
10 1p58_D Envelope protein M; fla 8.8 2.2E+02 0.0075 18.1 2.3 21 118-138 27-47 (75)
No 1
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=36.89 E-value=84 Score=23.51 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 028034 68 SVLTLGGGYLFGLPVGFVADSIGATIGAGA 97 (215)
Q Consensus 68 ~~l~~~~g~~~g~~~g~l~~~~g~~lg~~i 97 (215)
.+....+++.+||..|.+...+...+++..
T Consensus 48 ~i~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 48 DVPSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp GHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 467778899999999999988888888776
No 2
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=32.06 E-value=79 Score=26.83 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccC--ChHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 028034 32 KILKDFLTWVDQDLGPWGPLVLAVAYIPLTILAV--PASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLL 101 (215)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~i--P~~~l~~~~g~~~g~~~g~l~~~~g~~lg~~i~y~l 101 (215)
.++.+..+|++|+...... +=..+--..+++.. |.+=+.+..|..++-++..+...+|+.+|...++.+
T Consensus 35 g~~~~~~~~~~~~~~~~~~-i~~~LrG~gQV~f~~n~lsGlliLigl~i~sp~~al~allG~~vstltA~ll 105 (384)
T 4ezc_A 35 GDMKEFANWLKDKPQALQF-VDWVLRGISQVVFVSNPISGILILVGLLVQNPWCALNGCVGTVVSTLTALLL 105 (384)
T ss_dssp TTCHHHHHHHHTSCHHHHH-HHHHHHHHHGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHhcCCcHHHH-HHHHhcCceEEEecCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888999964322222 22233334455554 444466666666665554455555555555444443
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=14.79 E-value=4e+02 Score=20.15 Aligned_cols=14 Identities=14% Similarity=0.026 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhhhh
Q 028034 172 MPITLALVYVGTTL 185 (215)
Q Consensus 172 ~~~~~~~~~~G~~~ 185 (215)
+.++.+.+.++..+
T Consensus 174 liK~~la~~i~~~l 187 (198)
T 4dve_A 174 CIKAILTVVIVRRL 187 (198)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555544
No 4
>3sp7_A BCL-2-like protein 1; apoptosis regulator-inhibitor complex; HET: 03B; 1.40A {Homo sapiens} PDB: 2lp8_A* 2lpc_A 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 4ehr_A* 3spf_A* 2pon_B 3r85_A 2p1l_A 4a1u_A* 2yj1_A 2yq7_A 2yq6_A 3fdm_A ...
Probab=13.15 E-value=3.5e+02 Score=19.90 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCChHHHHH
Q 028034 35 KDFLTWVDQDLGPWGPLVL 53 (215)
Q Consensus 35 ~~l~~~~~~~~~~~~~~l~ 53 (215)
+.+.+|++++-||-+.+-+
T Consensus 139 ~~l~~WI~~~GGW~gf~~~ 157 (172)
T 3sp7_A 139 DHLEPWIQENGGWDTFVEL 157 (172)
T ss_dssp HHTHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHCCCHHHHHHH
Confidence 4567888866666555443
No 5
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=12.99 E-value=1.6e+02 Score=14.74 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028034 87 DSIGATIGAGAAFLLGRTI 105 (215)
Q Consensus 87 ~~~g~~lg~~i~y~lgr~~ 105 (215)
...|.++|..-.|.+|+..
T Consensus 7 ~AAGaVvGglGgy~lg~~m 25 (27)
T 2lbg_A 7 AAAGAVVGGLGGYMLGSAM 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHh
Confidence 3567788888888888643
No 6
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=11.98 E-value=96 Score=15.25 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=10.7
Q ss_pred hhcCCCChhhHHHHhhc
Q 028034 139 RLVPLLPFNMLNYLLSV 155 (215)
Q Consensus 139 r~~P~~p~~~~~~~~G~ 155 (215)
||-|-+|-.+...++|.
T Consensus 2 RF~P~vpvaintvaagi 18 (27)
T 2hfr_A 2 RFWPLVPVAINTVAAGI 18 (27)
T ss_dssp CSCSSSSSHHHHHHHHH
T ss_pred CccccCcceEEEeehhh
Confidence 67788887555555553
No 7
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=11.51 E-value=2.1e+02 Score=15.28 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH
Q 028034 91 ATIGAGAAFLLGRT 104 (215)
Q Consensus 91 ~~lg~~i~y~lgr~ 104 (215)
..+|++..|+=||+
T Consensus 21 ~~lg~tflywrgrr 34 (40)
T 2l9u_A 21 MMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhCceeEEEcccc
Confidence 57889999998886
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=10.36 E-value=3.5e+02 Score=23.80 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHhcCCChHHH
Q 028034 30 VEKILKDFLTWVDQDLGPWGPL 51 (215)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~ 51 (215)
.++..+...+|+.++++++..+
T Consensus 41 ~~~~~~~~~~~i~~~fgW~y~l 62 (509)
T 2wsw_A 41 SNEVINAVFSYVTNVWGWAFEW 62 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
Confidence 4567789999999877775443
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=9.07 E-value=3.7e+02 Score=23.81 Aligned_cols=22 Identities=18% Similarity=-0.013 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHhcCCChHH
Q 028034 29 PVEKILKDFLTWVDQDLGPWGP 50 (215)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~ 50 (215)
...+.++...+|+.++++++..
T Consensus 43 ~~~~~~~~~~~~i~~~fgW~y~ 64 (539)
T 4ain_A 43 SFTNFASSALSAVVDNLGWAFI 64 (539)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 3567789999999988777543
No 10
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=8.84 E-value=2.2e+02 Score=18.08 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcchHHHHHHH
Q 028034 118 PQFRSVALAIQRSGFKIVLLL 138 (215)
Q Consensus 118 ~~~~~~~~~~~~~g~~~i~~~ 138 (215)
+.+.|.|+++-||....+...
T Consensus 27 ~~l~kvE~WilrNp~~al~a~ 47 (75)
T 1p58_D 27 KHAQRIETWILRHPGFTIMAA 47 (75)
T ss_pred HHHHHHHHHHHHChHHHHHHH
Confidence 578899999888876655544
Done!