Query 028034
Match_columns 215
No_of_seqs 110 out of 1216
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 08:01:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028034.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028034hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 16.5 1E+02 0.0075 17.9 7.0 18 118-135 37-54 (86)
2 d2jm6b1 f.1.4.1 (B:147-308) EA 16.3 1.3E+02 0.0096 20.0 5.4 44 7-50 95-150 (162)
3 d1g5ma_ f.1.4.1 (A:) Bcl-2 {Hu 12.0 2.1E+02 0.015 19.1 5.5 44 7-50 100-155 (164)
4 d1t33a2 a.121.1.1 (A:89-220) P 6.4 1.6E+02 0.012 19.0 2.7 36 91-130 83-122 (132)
5 d1zy3a1 f.1.4.1 (A:1-170) Apop 5.6 4.1E+02 0.03 17.6 5.3 43 7-49 91-145 (170)
6 d1f16a_ f.1.4.1 (A:) Proapopto 5.3 4.1E+02 0.03 18.0 4.6 44 7-50 106-161 (192)
7 d2ckca1 d.76.2.1 (A:2563-2622) 5.2 49 0.0036 18.7 -0.6 26 117-142 23-48 (60)
8 d1pq1a_ f.1.4.1 (A:) Apoptosis 4.7 5.1E+02 0.037 17.6 4.8 36 7-42 136-171 (196)
9 d2osoa1 d.278.1.3 (A:5-156) Hy 4.4 1.1E+02 0.008 20.3 0.7 40 90-135 40-79 (152)
10 d2iuba2 f.17.3.1 (A:286-349) M 4.1 2.9E+02 0.021 14.8 2.4 18 172-189 17-34 (64)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=16.45 E-value=1e+02 Score=17.95 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=7.6
Q ss_pred hHHHHHHHHHhcchHHHH
Q 028034 118 PQFRSVALAIQRSGFKIV 135 (215)
Q Consensus 118 ~~~~~~~~~~~~~g~~~i 135 (215)
+..++..+.+-|+..+.+
T Consensus 37 ~~~~~~i~~~~~~~i~~i 54 (86)
T d2vv5a3 37 ATVADFLSALVRYGIIAF 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 2
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.29 E-value=1.3e+02 Score=20.01 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcchHHHH------------HHHHHHHHhcCCChHH
Q 028034 7 SALRITLLILLVAAVVTACFTLPVEKIL------------KDFLTWVDQDLGPWGP 50 (215)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~~ 50 (215)
+|-|+..++.+-..++.-+.-...++.+ +.+.+|++++-||-+.
T Consensus 95 NWGRIval~~F~~~la~~~~~~~~~~~v~~i~~~~~~fl~~~l~~WI~~~GGW~gf 150 (162)
T d2jm6b1 95 NWGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDWLVKQRGWDGF 150 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSHHHHHHTTTHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhHHHHHHHCCCHHHH
Confidence 5666665555444443333333333322 3466777754444343
No 3
>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.95 E-value=2.1e+02 Score=19.13 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcchHHHH------------HHHHHHHHhcCCChHH
Q 028034 7 SALRITLLILLVAAVVTACFTLPVEKIL------------KDFLTWVDQDLGPWGP 50 (215)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~~ 50 (215)
+|-|+..++.+-..++.=+.-...++.+ +.+.+|++++-||-+.
T Consensus 100 nWGRIVal~~F~~~la~~~~~~~~~~~v~~i~~~~~~~l~~~l~~WI~~~GGW~gf 155 (164)
T d1g5ma_ 100 NWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAF 155 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhHHHHHHHcCCHHHH
Confidence 4555554444444443333333333333 3456677755454443
No 4
>d1t33a2 a.121.1.1 (A:89-220) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=6.41 E-value=1.6e+02 Score=18.95 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHhc----CChHHHHHHHHHhcc
Q 028034 91 ATIGAGAAFLLGRTIGKPFVISKLK----DYPQFRSVALAIQRS 130 (215)
Q Consensus 91 ~~lg~~i~y~lgr~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 130 (215)
+++|..+.|.++|.. +.++++ +.++.+++.+.+.++
T Consensus 83 sivGq~l~f~var~~----~l~~lgw~~~~~~~~~~i~~~i~~~ 122 (132)
T d1t33a2 83 ALLGEVLAFRLGKET----ILLRTGWPQFDEEKAELIYQTVTCH 122 (132)
T ss_dssp HHHHHHHHHHHTHHH----HHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHhcCCCcCCHHHHHHHHHHHHHH
Confidence 678888999888764 333332 235666776666654
No 5
>d1zy3a1 f.1.4.1 (A:1-170) Apoptosis regulator Bcl-w {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.62 E-value=4.1e+02 Score=17.56 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcchHHHHH------------HHHHHHHhcCCChH
Q 028034 7 SALRITLLILLVAAVVTACFTLPVEKILK------------DFLTWVDQDLGPWG 49 (215)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~ 49 (215)
+|-|+..++.+-..++.-+.-...++.++ .+.+|++++-||-+
T Consensus 91 nWGRIVal~~F~g~la~~~~~~~~~~~v~~i~~~~~~fl~~~l~~WI~~~GGW~g 145 (170)
T d1zy3a1 91 NWGRLVAFFVFGAALCAESVNKEMEVLVGQVQEWMVAYLETRLADWIHSSGGWAE 145 (170)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSHHHHHHHTTTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhHHHHHHHcCCHHH
Confidence 45565555554444444444444444443 34456665555544
No 6
>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.25 E-value=4.1e+02 Score=17.98 Aligned_cols=44 Identities=18% Similarity=0.325 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcchHHHH------------HHHHHHHHhcCCChHH
Q 028034 7 SALRITLLILLVAAVVTACFTLPVEKIL------------KDFLTWVDQDLGPWGP 50 (215)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~~ 50 (215)
+|-|+..++.+-..++.=+.-..+.+.+ +.+.+|++++-||-+.
T Consensus 106 nWGRIVal~~F~~~La~~~~~~~~~~~v~~i~~~~~~fl~~~l~~WI~~~GGW~g~ 161 (192)
T d1f16a_ 106 NWGRVVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWDGL 161 (192)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTTHHHHHTCSTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHH
Confidence 4555555554444444444444444333 3456677755566554
No 7
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.21 E-value=49 Score=18.74 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHhcchHHHHHHHhhcC
Q 028034 117 YPQFRSVALAIQRSGFKIVLLLRLVP 142 (215)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~i~~~r~~P 142 (215)
.++.+++.+|+++|+-+.+-.-+++|
T Consensus 23 AP~~~~L~~WL~~hP~y~Vd~p~~~p 48 (60)
T d2ckca1 23 APKNKDLVEWLKLHPTYTVDMPSYVP 48 (60)
T ss_dssp SCBHHHHHHHHHHCTTEEESCCCCCC
T ss_pred CcCHHHHHHHHHHCCCcEeecCccCc
Confidence 46788999999999877665555555
No 8
>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.68 E-value=5.1e+02 Score=17.56 Aligned_cols=36 Identities=11% Similarity=0.234 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 028034 7 SALRITLLILLVAAVVTACFTLPVEKILKDFLTWVD 42 (215)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 42 (215)
+|-|+..++.+-..++.=+.-....+.++.+.+|+.
T Consensus 136 nWGRIVal~~F~~~la~~~~~~~~~~~v~~I~~~~~ 171 (196)
T d1pq1a_ 136 NWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMA 171 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 456655555554444444444555566777777665
No 9
>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]}
Probab=4.38 E-value=1.1e+02 Score=20.26 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhCHHHHHHHhcCChHHHHHHHHHhcchHHHH
Q 028034 90 GATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIV 135 (215)
Q Consensus 90 g~~lg~~i~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 135 (215)
+..=.+.+-|..||..|+.... +..+.+.+.++++|+..+
T Consensus 40 ~~~~~~~iLY~aGk~lGr~~~~------k~~eel~~ff~~~g~G~L 79 (152)
T d2osoa1 40 KELGSETSLYEIGEEFGKMLSP------KNIEELKKIFKLMNFGDL 79 (152)
T ss_dssp C--CCCCCHHHHHHHHHHHHCC------SSHHHHHHHHHHHTCCEE
T ss_pred cccchHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcCCceE
Confidence 3334456788899888765332 246667777777765433
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.05 E-value=2.9e+02 Score=14.84 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhhhhcccc
Q 028034 172 MPITLALVYVGTTLKDLS 189 (215)
Q Consensus 172 ~~~~~~~~~~G~~~~~~~ 189 (215)
+|.+++....|...+++.
T Consensus 17 lP~t~i~gifGMN~~~~P 34 (64)
T d2iuba2 17 MPLTFIAGIYGMNFEYMP 34 (64)
T ss_dssp HHHHHHTTSCC-------
T ss_pred HHHHHHHhhhccCCCCCC
Confidence 444555555554444443
Done!