Query 028035
Match_columns 215
No_of_seqs 109 out of 356
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 05:15:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3106 ER lumen protein retai 100.0 2.9E-90 6.3E-95 578.8 15.6 212 1-215 1-212 (212)
2 COG5196 ERD2 ER lumen protein 100.0 8.4E-79 1.8E-83 502.6 17.2 213 1-215 1-214 (214)
3 PF00810 ER_lumen_recept: ER l 100.0 2.5E-58 5.5E-63 375.8 13.3 143 28-172 1-147 (147)
4 TIGR00951 2A43 Lysosomal Cysti 96.1 0.81 1.7E-05 39.7 17.9 140 12-154 15-175 (220)
5 PF04193 PQ-loop: PQ loop repe 94.6 0.2 4.4E-06 34.1 6.7 54 118-171 2-55 (61)
6 PF04193 PQ-loop: PQ loop repe 91.6 0.35 7.7E-06 32.9 4.2 41 7-47 8-48 (61)
7 KOG3211 Predicted endoplasmic 91.6 3.6 7.7E-05 36.1 11.1 170 20-203 50-225 (230)
8 smart00679 CTNS Repeated motif 86.4 0.59 1.3E-05 27.8 2.0 24 19-42 6-29 (32)
9 PHA02246 hypothetical protein 78.3 26 0.00057 29.5 9.3 147 20-193 24-178 (192)
10 KOG1623 Multitransmembrane pro 76.4 47 0.001 29.6 11.0 171 6-194 8-204 (243)
11 TIGR00951 2A43 Lysosomal Cysti 66.9 34 0.00075 29.6 7.9 46 126-171 12-64 (220)
12 PTZ00154 40S ribosomal protein 55.8 7.8 0.00017 31.5 1.8 27 5-38 49-75 (134)
13 COG4095 Uncharacterized conser 55.4 90 0.002 23.7 8.3 48 124-171 11-58 (89)
14 COG4095 Uncharacterized conser 38.1 74 0.0016 24.2 4.5 39 7-45 11-49 (89)
15 PF02790 COX2_TM: Cytochrome C 25.5 88 0.0019 22.0 3.1 17 98-114 65-81 (84)
16 PF15052 TMEM169: TMEM169 prot 23.1 65 0.0014 26.1 2.1 18 117-134 87-104 (133)
17 KOG2913 Predicted membrane pro 22.6 70 0.0015 28.7 2.5 79 123-204 171-249 (260)
No 1
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-90 Score=578.78 Aligned_cols=212 Identities=61% Similarity=1.012 Sum_probs=209.3
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028035 1 MNIFRFAGDMTHLISILVLLLKIYATKSCSGISLKTQELYALVFLTRYLDLFTDFISVYNTVMKLVFIASSLAIVWCMRM 80 (215)
Q Consensus 1 mn~fr~~gd~~hl~s~~iLl~Ki~~~kS~~GiSlkTQ~ly~ivf~~Ryldl~~~~~s~Y~~~mki~~i~~s~~iiyli~~ 80 (215)
||.||++||++|++|+++|++||+|+|||+|||+|||+|||+||++||+|+|+.++|.||++||++++++|.+++|+|++
T Consensus 1 mn~fr~~gd~~H~~~i~vLi~Ki~ktrsCaGiSlKSQ~L~Alvf~~Ryldlf~~~~s~ynt~mki~fl~~t~~ivymi~~ 80 (212)
T KOG3106|consen 1 MNNFRFAGDLSHLAAIIVLILKIWKTKSCAGISLKSQELFALVFATRYLDLFTFYESLYNTIMKIAFLASTLWIVYMIRF 80 (212)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred ccccccccccccccccchhhHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHhhhHHHHHHhcCCccchHHHHHHHHHHH
Q 028035 81 HRAVRRTYDKELDTFRHYFLIAACFVLSLILNEKFTFQEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAY 160 (215)
Q Consensus 81 ~~~~~~Ty~~~~Dtf~~~~li~p~~vLa~l~~~~~~~~ei~WtfSi~LEsvAiLPQL~ml~k~~~ve~ltshYv~~Lg~y 160 (215)
|+|+|||+|+|||+++|+++||++||+++||++++.|++||||+|||||||||||+|+||+||+|++|+||++|||+|
T Consensus 81 --k~~~tYd~~~DtFri~~llvp~~vlsl~i~~~~t~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~y 158 (212)
T KOG3106|consen 81 --KLRATYDKEKDTFRIEYLLVPSAVLSLLINHSFTILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGLY 158 (212)
T ss_pred --HHHHHHhcccCceeEEEEehhheeeeeeecCCccHHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcCCCccchhHhHHHHHHHHHHhhhhheeeeehccCccccCCC
Q 028035 161 RAFYILNWIYRYITEPHFSRWIACVSGIVQTALYADFFYYYFISWKNNAKLQLPA 215 (215)
Q Consensus 161 R~ly~~~Wi~~y~~~~~~~~~~~i~~givqt~l~~DF~y~Y~~~~~~G~~~~Lp~ 215 (215)
|++|++|||+|+..|+. +|++++++|+|||++||||||+|++++++|||++||+
T Consensus 159 R~ly~~~WI~r~~~e~~-~~~iai~agiVQT~ly~DFfy~Y~~~v~~g~~~~LP~ 212 (212)
T KOG3106|consen 159 RALYIANWIYRYVTEDF-WDPIAIVAGIVQTVLYADFFYLYVTKVLQGKKLKLPA 212 (212)
T ss_pred HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHhHHHHHHHHHHcCCcCCCCC
Confidence 99999999999999885 5999999999999999999999999999999999995
No 2
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.4e-79 Score=502.60 Aligned_cols=213 Identities=50% Similarity=0.810 Sum_probs=207.0
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhhccccc-chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028035 1 MNIFRFAGDMTHLISILVLLLKIYATKSCSGISLKTQELYALVFLTRYLDLF-TDFISVYNTVMKLVFIASSLAIVWCMR 79 (215)
Q Consensus 1 mn~fr~~gd~~hl~s~~iLl~Ki~~~kS~~GiSlkTQ~ly~ivf~~Ryldl~-~~~~s~Y~~~mki~~i~~s~~iiyli~ 79 (215)
||.||++||++|++|+.+|+.||+|+|+|+|+|+|||.||++||++||+|++ +.+.|+||.+||++||+++.+|+++|+
T Consensus 1 m~~Fr~lGD~~Hlasi~vLih~ik~tr~csGlSlKtq~Ly~lVfitRYldLf~f~~~slYn~lMki~FI~s~~yI~~lm~ 80 (214)
T COG5196 1 MDTFRFLGDFLHLASIAVLIHKIKRTRSCSGLSLKTQFLYSLVFITRYLDLFDFYARSLYNSLMKILFIGSQVYILFLMR 80 (214)
T ss_pred CcHHHHHhHHHHHHHHHHHHHHhhhcceecceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999 456789999999999999999999999
Q ss_pred cccccccccccccccccchhhHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHhhhHHHHHHhcCCccchHHHHHHHHHH
Q 028035 80 MHRAVRRTYDKELDTFRHYFLIAACFVLSLILNEKFTFQEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGA 159 (215)
Q Consensus 80 ~~~~~~~Ty~~~~Dtf~~~~li~p~~vLa~l~~~~~~~~ei~WtfSi~LEsvAiLPQL~ml~k~~~ve~ltshYv~~Lg~ 159 (215)
+ ++++||||..|||++.++++||+++|+++|++.++.|++||||+|||||||+|||+|+||.||-|++|+||+++||+
T Consensus 81 ~--~~r~tYdk~lDtF~i~~ll~gsav~slff~~~~tisnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgL 158 (214)
T COG5196 81 F--KYRSTYDKKLDTFNILTLLVGSAVFSLFFTRGGTISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGL 158 (214)
T ss_pred h--cccchHHHhhhhhhhhhhhhhhhhheeeecCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhcCCCccchhHhHHHHHHHHHHhhhhheeeeehccCccccCCC
Q 028035 160 YRAFYILNWIYRYITEPHFSRWIACVSGIVQTALYADFFYYYFISWKNNAKLQLPA 215 (215)
Q Consensus 160 yR~ly~~~Wi~~y~~~~~~~~~~~i~~givqt~l~~DF~y~Y~~~~~~G~~~~Lp~ 215 (215)
||++|++|||+|+..+.+-.+.+++.+|++||++|.|||+.|+|.|.+||+++||.
T Consensus 159 YRalYip~wI~r~~~~~kk~~~iai~aGivQTlLY~DFf~iYyr~V~rGk~f~LP~ 214 (214)
T COG5196 159 YRALYIPYWILRKVYDIKKTGNIAIAAGIVQTLLYLDFFAIYYRYVFRGKSFSLPS 214 (214)
T ss_pred HHHhhhhHHHHHhhhcccccccchhHHHHHHHHHHHHhHHhhhhhhhcccccCCCC
Confidence 99999999999998875445899999999999999999999999999999999995
No 3
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=100.00 E-value=2.5e-58 Score=375.83 Aligned_cols=143 Identities=64% Similarity=1.149 Sum_probs=138.7
Q ss_pred ccccccchhhHHHHHHHHhhcccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccchhhHHHHH
Q 028035 28 SCSGISLKTQELYALVFLTRYLDL--FTDFISVYNTVMKLVFIASSLAIVWCMRMHRAVRRTYDKELDTFRHYFLIAACF 105 (215)
Q Consensus 28 S~~GiSlkTQ~ly~ivf~~Ryldl--~~~~~s~Y~~~mki~~i~~s~~iiyli~~~~~~~~Ty~~~~Dtf~~~~li~p~~ 105 (215)
||+|+|+|||+||++||++||+|+ +.++.+.||++||++++++|++++|+|+. |||+|||+++|+|+..++++||+
T Consensus 1 S~~GlSlktq~ly~~vf~~Ryldl~~f~~~~s~y~~~~k~~~i~~s~~iiyli~~--~~~~Ty~~~~D~f~~~~li~p~~ 78 (147)
T PF00810_consen 1 SCSGLSLKTQILYAIVFLTRYLDLFWFESYLSLYNTIMKVFFIVSSLYIIYLIFF--KYKSTYDKEIDTFRLEYLIVPCF 78 (147)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhe--eehhhhhccccchhhhHHHHHHH
Confidence 799999999999999999999999 66778999999999999999999999998 99999999999999999999999
Q ss_pred HHHHhhc--CCcchhHHHHHHHHHHHHHHhhhHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhhhhhh
Q 028035 106 VLSLILN--EKFTFQEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAYRAFYILNWIYRY 172 (215)
Q Consensus 106 vLa~l~~--~~~~~~ei~WtfSi~LEsvAiLPQL~ml~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~~y 172 (215)
+||+++| +++++.|++||||+|||||||+|||+|+||+||+|++|+||+++||+||++|++|||+||
T Consensus 79 vLa~i~~p~~~~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~rY 147 (147)
T PF00810_consen 79 VLALIFHPLNSFFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLLNWIYRY 147 (147)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999 556799999999999999999999999999999999999999999999999999999997
No 4
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.12 E-value=0.81 Score=39.70 Aligned_cols=140 Identities=16% Similarity=0.188 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHh-------hcccccc--hh-HHHHHHHHHHHHH-----HHHHHHHH
Q 028035 12 HLISILVLLLKIYATKSCSGISLKTQELYALVFLT-------RYLDLFT--DF-ISVYNTVMKLVFI-----ASSLAIVW 76 (215)
Q Consensus 12 hl~s~~iLl~Ki~~~kS~~GiSlkTQ~ly~ivf~~-------Ryldl~~--~~-~s~Y~~~mki~~i-----~~s~~iiy 76 (215)
...++.-=+.|+.|+||++|+|+..-.+-.+.+++ +|.+-.. .+ .+.|..-.+-+++ +.++.+++
T Consensus 15 ~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ai~~~il~~l~~~ 94 (220)
T TIGR00951 15 WSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFTLHAILICFIVLH 94 (220)
T ss_pred HHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 45566666799999999999999998755544432 2211110 00 0111100011221 22222323
Q ss_pred HHHccccccccccccccccc--c--hhhHHHHHHHHHhhcC--CcchhHHHHHHHHHHHHHHhhhHHHHHHhcCCccchH
Q 028035 77 CMRMHRAVRRTYDKELDTFR--H--YFLIAACFVLSLILNE--KFTFQEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLT 150 (215)
Q Consensus 77 li~~~~~~~~Ty~~~~Dtf~--~--~~li~p~~vLa~l~~~--~~~~~ei~WtfSi~LEsvAiLPQL~ml~k~~~ve~lt 150 (215)
... ++.+..++...+.. . ..+.+.+..+..+..+ ..++.+.++...+-+-.++-+||..+-.|.|..+.+-
T Consensus 95 q~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glS 171 (220)
T TIGR00951 95 QCG---DYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLS 171 (220)
T ss_pred HHh---hccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCC
Confidence 222 22211111111111 1 1222222222233332 1346677777788888889999999998866555444
Q ss_pred HHHH
Q 028035 151 GQYV 154 (215)
Q Consensus 151 shYv 154 (215)
..-+
T Consensus 172 i~~i 175 (220)
T TIGR00951 172 IITV 175 (220)
T ss_pred HHHH
Confidence 3333
No 5
>PF04193 PQ-loop: PQ loop repeat
Probab=94.57 E-value=0.2 Score=34.10 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhhhhh
Q 028035 118 QEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAYRAFYILNWIYR 171 (215)
Q Consensus 118 ~ei~WtfSi~LEsvAiLPQL~ml~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~~ 171 (215)
.+++...+.-+++++-+||+....|++++|.+.--++.......++.+++.+..
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~ 55 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILS 55 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 467788899999999999999999999999999999998888888888877654
No 6
>PF04193 PQ-loop: PQ loop repeat
Probab=91.63 E-value=0.35 Score=32.89 Aligned_cols=41 Identities=27% Similarity=0.273 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhh
Q 028035 7 AGDMTHLISILVLLLKIYATKSCSGISLKTQELYALVFLTR 47 (215)
Q Consensus 7 ~gd~~hl~s~~iLl~Ki~~~kS~~GiSlkTQ~ly~ivf~~R 47 (215)
.|=..-+++.+-=+.|.+|+||+.|+|..+..+..+..+++
T Consensus 8 i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~ 48 (61)
T PF04193_consen 8 ISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILW 48 (61)
T ss_pred HHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 33444455555667999999999999999988887777655
No 7
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=91.56 E-value=3.6 Score=36.06 Aligned_cols=170 Identities=15% Similarity=0.130 Sum_probs=92.8
Q ss_pred HHHHhhccccccccchhhHHHHHHHHh--hcccccchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
Q 028035 20 LLKIYATKSCSGISLKTQELYALVFLT--RYLDLFTDFISVYNTVMKLVFIASSLAIVWCMRMHRAVRRTYDKELDTFRH 97 (215)
Q Consensus 20 l~Ki~~~kS~~GiSlkTQ~ly~ivf~~--Ryldl~~~~~s~Y~~~mki~~i~~s~~iiyli~~~~~~~~Ty~~~~Dtf~~ 97 (215)
+.||+..||+.|+|..+|+|=++.++. +|.-- .+| -+.+.++..++..+..++-++-+ .|+-. .-..|.|--
T Consensus 50 I~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~-~g~--pFss~gE~~fLl~Q~vili~~if--~f~~~-~~~~v~~l~ 123 (230)
T KOG3211|consen 50 IMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYT-SGY--PFSSYGEYPFLLLQAVILILCIF--HFSGQ-TVTVVQFLG 123 (230)
T ss_pred HHHHHhhcccccccHHHHHHHHHHHHheeeehhh-cCC--CchhHHHHHHHHHHHHHHHHHHH--Hhccc-eeehhhHHH
Confidence 589999999999999999998887753 33110 011 12334777888888887777777 56511 111233333
Q ss_pred hhhHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHhhhHHHHHHhc---CCccchHHHHHHHHHHHHHHHHHhhhhhhhc
Q 028035 98 YFLIAACFVLSLILNEKFTFQEIFWAFSIYLEAVAILPQLVLLQRS---GNVDNLTGQYVFFLGAYRAFYILNWIYRYIT 174 (215)
Q Consensus 98 ~~li~p~~vLa~l~~~~~~~~ei~WtfSi~LEsvAiLPQL~ml~k~---~~ve~ltshYv~~Lg~yR~ly~~~Wi~~y~~ 174 (215)
.+.+++..+.+.. .| .++.+..=+-.+-.-.++=+||..-..|+ |...-+|.---+.=.+.|.++ +..+
T Consensus 124 ~~~~v~~~~~sk~-~p-~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARift------siq~ 195 (230)
T KOG3211|consen 124 YIALVVSVLASKA-LP-LWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFT------SIQE 195 (230)
T ss_pred HHHHHHHHHHHhh-hh-HHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHH------HHHh
Confidence 3333333222211 11 11122222222223347889999988774 566666655556666677664 3334
Q ss_pred CCCccc-hhHhHHHHHHHHHHhhhhheeee
Q 028035 175 EPHFSR-WIACVSGIVQTALYADFFYYYFI 203 (215)
Q Consensus 175 ~~~~~~-~~~i~~givqt~l~~DF~y~Y~~ 203 (215)
.+.+.- .--+++-..+..+.+.++.|+=+
T Consensus 196 t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~ 225 (230)
T KOG3211|consen 196 TGDFLMLLRFVISLALNGLITAQVLRYWST 225 (230)
T ss_pred cCChhhHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 443310 11123445666677777766533
No 8
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=86.36 E-value=0.59 Score=27.82 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=19.5
Q ss_pred HHHHHhhccccccccchhhHHHHH
Q 028035 19 LLLKIYATKSCSGISLKTQELYAL 42 (215)
Q Consensus 19 Ll~Ki~~~kS~~GiSlkTQ~ly~i 42 (215)
=+.|++|+||+.|+|.-...+...
T Consensus 6 Qi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 6 QIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred HHHHHHHcCCcCcCCHHHHHHHHh
Confidence 368999999999999988765543
No 9
>PHA02246 hypothetical protein
Probab=78.28 E-value=26 Score=29.53 Aligned_cols=147 Identities=20% Similarity=0.296 Sum_probs=79.0
Q ss_pred HHHHhhccccccccchhhHHHHHHHHhhcccccchhHHHHHHHH------HHHH--HHHHHHHHHHHHcccccccccccc
Q 028035 20 LLKIYATKSCSGISLKTQELYALVFLTRYLDLFTDFISVYNTVM------KLVF--IASSLAIVWCMRMHRAVRRTYDKE 91 (215)
Q Consensus 20 l~Ki~~~kS~~GiSlkTQ~ly~ivf~~Ryldl~~~~~s~Y~~~m------ki~~--i~~s~~iiyli~~~~~~~~Ty~~~ 91 (215)
+..+.++||..|+| .-.-|++++..- .|.||.+- +++. +-..+.++.+.-. .| ++
T Consensus 24 L~slvk~~nv~GvS--~~FWYLi~~tvg--------iSfyNlL~T~~~~fqi~svg~nl~lgivcLlv~--~~-----rk 86 (192)
T PHA02246 24 LVALVKAESVKGVS--NYFWYLIVATVG--------ISFYNLLLTDASVFQIVSVGLNLTLGIVCLLVA--SY-----RK 86 (192)
T ss_pred HHHHhhhcccccHH--HHHHHHHHHHHH--------HHHHHHHhcCCceEEEeeeehhhhhhhhheeee--hh-----hc
Confidence 46788999999998 345666666533 24444221 1111 1112223333322 22 23
Q ss_pred cccccchhhHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHhhhHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhhhhh
Q 028035 92 LDTFRHYFLIAACFVLSLILNEKFTFQEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAYRAFYILNWIYR 171 (215)
Q Consensus 92 ~Dtf~~~~li~p~~vLa~l~~~~~~~~ei~WtfSi~LEsvAiLPQL~ml~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~~ 171 (215)
+|-|...++++-++.+-++ .....+.+..=+-|+ -.|-.||...+.|++..|......-..+|..-++-..+-..
T Consensus 87 kd~f~~~fiiifSLllfll-~~~~evtQtVat~tI---iLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~L- 161 (192)
T PHA02246 87 KDYFSIPFIIVFSLLLFLL-SDFTALTQTVATITI---ILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVL- 161 (192)
T ss_pred cccccchHHHHHHHHHHHH-hhhHHHHHHHHHHHH---HHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhh-
Confidence 5777777766655443222 222223333334444 46889999999999988877665544444443333332211
Q ss_pred hhcCCCccchhHhHHHHHHHHH
Q 028035 172 YITEPHFSRWIACVSGIVQTAL 193 (215)
Q Consensus 172 y~~~~~~~~~~~i~~givqt~l 193 (215)
.+ ....-+++++++.++
T Consensus 162 ----th-v~~hIiiTEf~N~iL 178 (192)
T PHA02246 162 ----TH-TYVHIIATEFVNFVL 178 (192)
T ss_pred ----hC-CcceeeHHHHHHHHH
Confidence 12 134556788888765
No 10
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=76.40 E-value=47 Score=29.58 Aligned_cols=171 Identities=16% Similarity=0.241 Sum_probs=87.0
Q ss_pred hhhhhHHHHHHH------HHHHHHhhccccccccchhhHHHHH--HHHhhcccccc-hhH-HHHHHHHHHHHHHHHHHHH
Q 028035 6 FAGDMTHLISIL------VLLLKIYATKSCSGISLKTQELYAL--VFLTRYLDLFT-DFI-SVYNTVMKLVFIASSLAIV 75 (215)
Q Consensus 6 ~~gd~~hl~s~~------iLl~Ki~~~kS~~GiSlkTQ~ly~i--vf~~Ryldl~~-~~~-s~Y~~~mki~~i~~s~~ii 75 (215)
++|+..+..+++ -...+|+|+||..|.|.-==.+-.+ .+..||--+-. .+. ..-|. +.+.+.++
T Consensus 8 l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~------~G~~ie~~ 81 (243)
T KOG1623|consen 8 LFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITING------IGLVIETV 81 (243)
T ss_pred HHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEeh------hcHHHHHH
Confidence 466777777664 3568999999999998754333222 23345442111 000 00121 12333444
Q ss_pred HHHHcccccccccccccccccch------hhHHHHHHHHHhhcCCcc----hhHHH--HHHHHHHHHHHhhhHHHHHHhc
Q 028035 76 WCMRMHRAVRRTYDKELDTFRHY------FLIAACFVLSLILNEKFT----FQEIF--WAFSIYLEAVAILPQLVLLQRS 143 (215)
Q Consensus 76 yli~~~~~~~~Ty~~~~Dtf~~~------~li~p~~vLa~l~~~~~~----~~ei~--WtfSi~LEsvAiLPQL~ml~k~ 143 (215)
|.+.+ -|-..-++ +.... .+.+..+.....+|.+.. .--+| -+.++|.-.++.++ +-=|+
T Consensus 82 Yi~~f--~~ya~~k~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~---~VIkt 153 (243)
T KOG1623|consen 82 YISIF--LYYAPKKK---TVKIVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIR---KVIKT 153 (243)
T ss_pred HHHHH--heecCchh---eeEeeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhh---hheec
Confidence 44444 22222222 33222 112222222244443221 22233 35566666677766 33345
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhh-hhhhhcCCCc---cchhHhHHHHHHHHHH
Q 028035 144 GNVDNLTGQYVFFLGAYRAFYILNW-IYRYITEPHF---SRWIACVSGIVQTALY 194 (215)
Q Consensus 144 ~~ve~ltshYv~~Lg~yR~ly~~~W-i~~y~~~~~~---~~~~~i~~givqt~l~ 194 (215)
+.+|.+=-- |-+.-++-..-| +|...-.+.+ ++.+..+.|++|..+|
T Consensus 154 kSvE~mPf~----Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly 204 (243)
T KOG1623|consen 154 KSVEYMPFP----LSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILY 204 (243)
T ss_pred CceeeechH----HHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHh
Confidence 777766433 344445556668 5666655543 4678889999999999
No 11
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=66.94 E-value=34 Score=29.56 Aligned_cols=46 Identities=13% Similarity=0.311 Sum_probs=32.8
Q ss_pred HHHHHHHhhhHHHHHHhcCCccchHHHHHHH-------HHHHHHHHHHhhhhh
Q 028035 126 IYLEAVAILPQLVLLQRSGNVDNLTGQYVFF-------LGAYRAFYILNWIYR 171 (215)
Q Consensus 126 i~LEsvAiLPQL~ml~k~~~ve~ltshYv~~-------Lg~yR~ly~~~Wi~~ 171 (215)
.-.=+++-+||.....|++.+|.+.-.++.. .+.|-.....+|-.+
T Consensus 12 ~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~ 64 (220)
T TIGR00951 12 VAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSIT 64 (220)
T ss_pred HHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 3344678899999999999999998888873 444444444445544
No 12
>PTZ00154 40S ribosomal protein S17; Provisional
Probab=55.84 E-value=7.8 Score=31.49 Aligned_cols=27 Identities=48% Similarity=0.608 Sum_probs=20.2
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccccccccchhhH
Q 028035 5 RFAGDMTHLISILVLLLKIYATKSCSGISLKTQE 38 (215)
Q Consensus 5 r~~gd~~hl~s~~iLl~Ki~~~kS~~GiSlkTQ~ 38 (215)
|++|...|+ .|-.+...+.|||+|.|+
T Consensus 49 rIAGYIThl-------mkri~~gpvrgis~klqe 75 (134)
T PTZ00154 49 KIAGFVTHL-------MKRIQKGPVRGISLKLQE 75 (134)
T ss_pred HHHHHHHHH-------HhhhccCCccccceehhH
Confidence 566766665 344556789999999997
No 13
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=55.40 E-value=90 Score=23.72 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhhhhh
Q 028035 124 FSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAYRAFYILNWIYR 171 (215)
Q Consensus 124 fSi~LEsvAiLPQL~ml~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~~ 171 (215)
.+--+-.+|.+||+.-.-|+++-.+++--....+..++++-+++-+..
T Consensus 11 ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi 58 (89)
T COG4095 11 IAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILI 58 (89)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 344466889999999999999999998888888888888866655444
No 14
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=38.09 E-value=74 Score=24.17 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Q 028035 7 AGDMTHLISILVLLLKIYATKSCSGISLKTQELYALVFL 45 (215)
Q Consensus 7 ~gd~~hl~s~~iLl~Ki~~~kS~~GiSlkTQ~ly~ivf~ 45 (215)
.|...-.++++.=+.|+.|+||.+++|+-+-+...+..+
T Consensus 11 ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~ 49 (89)
T COG4095 11 IAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALF 49 (89)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence 345556677888889999999999999987665544443
No 15
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=25.54 E-value=88 Score=22.03 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHhhcCC
Q 028035 98 YFLIAACFVLSLILNEK 114 (215)
Q Consensus 98 ~~li~p~~vLa~l~~~~ 114 (215)
..-++|++++..+.-|+
T Consensus 65 ~WTiiP~iiLl~l~~pS 81 (84)
T PF02790_consen 65 IWTIIPAIILLFLAFPS 81 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhh
Confidence 36678888877665554
No 16
>PF15052 TMEM169: TMEM169 protein family
Probab=23.11 E-value=65 Score=26.10 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 028035 117 FQEIFWAFSIYLEAVAIL 134 (215)
Q Consensus 117 ~~ei~WtfSi~LEsvAiL 134 (215)
+.|+.|+|+.|.++|.-+
T Consensus 87 ~~QlSw~~~~W~~~v~D~ 104 (133)
T PF15052_consen 87 FVQLSWSFGSWWNEVRDF 104 (133)
T ss_pred hhheeeeHHHHHHHhhHh
Confidence 789999999999998654
No 17
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=22.59 E-value=70 Score=28.68 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhhHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhcCCCccchhHhHHHHHHHHHHhhhhheee
Q 028035 123 AFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAYRAFYILNWIYRYITEPHFSRWIACVSGIVQTALYADFFYYYF 202 (215)
Q Consensus 123 tfSi~LEsvAiLPQL~ml~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~~y~~~~~~~~~~~i~~givqt~l~~DF~y~Y~ 202 (215)
..|--++..+.+||..+-.|.+.+|.++--.-++..+....|... .+...+-.+..-..-+-..-.....+|++++.
T Consensus 171 ~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s---~~~~~n~~w~~~~~~~~~~D~~~~~q~~~~~~ 247 (260)
T KOG2913|consen 171 SLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS---SYLVTNLPWLVDSKGTIYLDIFIFLQFFNYRA 247 (260)
T ss_pred HHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc---cccccCCcccccCCcchhHHHHHHHHHHHhhc
Confidence 456778889999999999999999988875554444555555544 22211111111222233345566777777776
Q ss_pred ee
Q 028035 203 IS 204 (215)
Q Consensus 203 ~~ 204 (215)
.+
T Consensus 248 ~~ 249 (260)
T KOG2913|consen 248 SK 249 (260)
T ss_pred cc
Confidence 65
Done!