Query 028035
Match_columns 215
No_of_seqs 109 out of 356
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 08:02:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028035.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028035hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3ehbb2 f.17.2.1 (B:1-107) Bac 31.2 26 0.0019 23.9 4.2 16 99-114 81-96 (107)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 26.3 32 0.0023 23.0 3.8 16 99-114 75-90 (100)
3 d1v54b2 f.17.2.1 (B:1-90) Mito 24.5 34 0.0025 22.6 3.6 18 98-115 64-81 (90)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 11.4 19 0.0014 24.0 -0.6 48 63-113 25-80 (91)
5 d2exna1 b.165.1.1 (A:1-128) Hy 7.8 39 0.0029 23.5 -0.0 13 24-36 7-19 (128)
6 d2fm9a1 a.257.1.1 (A:49-263) C 7.7 53 0.0039 25.3 0.7 13 126-138 194-206 (215)
7 d1jt6a2 a.121.1.1 (A:73-187) M 5.2 1.9E+02 0.014 19.3 2.6 32 162-193 80-111 (115)
8 d2c52b1 a.153.1.1 (B:303-353) 3.9 2.7E+02 0.02 16.4 2.1 14 132-145 12-25 (51)
9 d1kbha_ a.153.1.1 (A:) Nuclear 3.3 2.7E+02 0.02 16.1 1.7 17 132-148 8-24 (47)
10 d1niga_ a.25.2.1 (A:) Hypothet 3.2 5.8E+02 0.043 17.7 3.9 32 147-179 93-124 (148)
No 1
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=31.23 E-value=26 Score=23.87 Aligned_cols=16 Identities=13% Similarity=0.166 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHhhcCC
Q 028035 99 FLIAACFVLSLILNEK 114 (215)
Q Consensus 99 ~li~p~~vLa~l~~~~ 114 (215)
.-++|+++|..+.-|+
T Consensus 81 WTviP~lIL~~laipS 96 (107)
T d3ehbb2 81 WTLVPVLILVAIGAFS 96 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666554444
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=26.29 E-value=32 Score=23.02 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHhhcCC
Q 028035 99 FLIAACFVLSLILNEK 114 (215)
Q Consensus 99 ~li~p~~vLa~l~~~~ 114 (215)
.-++|+++|..+.-|+
T Consensus 75 WTviP~lILi~l~~pS 90 (100)
T d3dtub2 75 WTIVPIVILVAIGAFS 90 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5567777776655444
No 3
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.49 E-value=34 Score=22.60 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHhhcCCc
Q 028035 98 YFLIAACFVLSLILNEKF 115 (215)
Q Consensus 98 ~~li~p~~vLa~l~~~~~ 115 (215)
..-++|+++|..+--|++
T Consensus 64 iWTiiP~lILi~ia~PSl 81 (90)
T d1v54b2 64 IWTILPAIILILIALPSL 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355677777666655554
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=11.35 E-value=19 Score=24.02 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHcccccccccccccc------cccch--hhHHHHHHHHHhhcC
Q 028035 63 MKLVFIASSLAIVWCMRMHRAVRRTYDKELD------TFRHY--FLIAACFVLSLILNE 113 (215)
Q Consensus 63 mki~~i~~s~~iiyli~~~~~~~~Ty~~~~D------tf~~~--~li~p~~vLa~l~~~ 113 (215)
|-++++.....++|.+. |||+.-+++.+ +-+.+ .-++|++++..+.-|
T Consensus 25 ~~iv~v~V~~~~~~~~~---ryR~~~~~~~~~~~~~~n~~lEi~WtiIP~iil~~iav~ 80 (91)
T d1fftb2 25 MLIVVIPAILMAVGFAW---KYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVL 80 (91)
T ss_dssp TTTTTTHHHHHHHTTTT---TTTTSTTTCSSCCCCCCCSHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhe---eeeccCCccCCCCcccCCceehhhHHHHHHHHHHHHHHH
Confidence 33344555555666554 56654332211 11222 445777777655443
No 5
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]}
Probab=7.80 E-value=39 Score=23.50 Aligned_cols=13 Identities=8% Similarity=0.245 Sum_probs=9.7
Q ss_pred hhccccccccchh
Q 028035 24 YATKSCSGISLKT 36 (215)
Q Consensus 24 ~~~kS~~GiSlkT 36 (215)
+-=|||.|+|+..
T Consensus 7 ~PIKsc~g~~~~~ 19 (128)
T d2exna1 7 QPIAECGATTQSE 19 (128)
T ss_dssp EEETTTEEECCGG
T ss_pred ecccccCCccccc
Confidence 3458999999854
No 6
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=7.70 E-value=53 Score=25.28 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=10.0
Q ss_pred HHHHHHHhhhHHH
Q 028035 126 IYLEAVAILPQLV 138 (215)
Q Consensus 126 i~LEsvAiLPQL~ 138 (215)
==||.+|++|||.
T Consensus 194 R~L~~~av~P~LL 206 (215)
T d2fm9a1 194 RHLEMQTLIPLLL 206 (215)
T ss_dssp -CCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHH
Confidence 3478999999974
No 7
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=5.15 E-value=1.9e+02 Score=19.29 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=20.1
Q ss_pred HHHHHhhhhhhhcCCCccchhHhHHHHHHHHH
Q 028035 162 AFYILNWIYRYITEPHFSRWIACVSGIVQTAL 193 (215)
Q Consensus 162 ~ly~~~Wi~~y~~~~~~~~~~~i~~givqt~l 193 (215)
++..+||+..++..+.--++-.+.-..+|.++
T Consensus 80 il~~lng~~~Wy~~~g~~~~~~la~~~~~l~L 111 (115)
T d1jt6a2 80 AANAVNGIVTFTHEQNINERIKLMNKFSQIFL 111 (115)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 45677899886654432255666666666665
No 8
>d2c52b1 a.153.1.1 (B:303-353) Nuclear receptor coactivator 1, NCOA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.88 E-value=2.7e+02 Score=16.39 Aligned_cols=14 Identities=36% Similarity=0.439 Sum_probs=10.6
Q ss_pred HhhhHHHHHHhcCC
Q 028035 132 AILPQLVLLQRSGN 145 (215)
Q Consensus 132 AiLPQL~ml~k~~~ 145 (215)
|++-||.++-+..+
T Consensus 12 ALLdQL~t~L~n~D 25 (51)
T d2c52b1 12 ALLEQLVSFLSGKD 25 (51)
T ss_dssp HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhcCc
Confidence 78899998876443
No 9
>d1kbha_ a.153.1.1 (A:) Nuclear receptor coactivator ACTR {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.27 E-value=2.7e+02 Score=16.09 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=12.3
Q ss_pred HhhhHHHHHHhcCCccc
Q 028035 132 AILPQLVLLQRSGNVDN 148 (215)
Q Consensus 132 AiLPQL~ml~k~~~ve~ 148 (215)
|++-||.++-+..+++.
T Consensus 8 aLldQL~s~L~~~D~~~ 24 (47)
T d1kbha_ 8 ALLDQLHTLLSNTDATG 24 (47)
T ss_dssp HHHHHHHHHTTSSCCTT
T ss_pred HHHHHHHHHHhcCchHH
Confidence 78899999877554433
No 10
>d1niga_ a.25.2.1 (A:) Hypothetical protein Ta1238 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=3.20 E-value=5.8e+02 Score=17.73 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=22.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhhhhcCCCcc
Q 028035 147 DNLTGQYVFFLGAYRAFYILNWIYRYITEPHFS 179 (215)
Q Consensus 147 e~ltshYv~~Lg~yR~ly~~~Wi~~y~~~~~~~ 179 (215)
-+-++-|.+ ++-+-+=..+||+++..++.+|.
T Consensus 93 Gnk~slYmf-lArsh~~~Av~~~~~m~edErFk 124 (148)
T d1niga_ 93 GNRWSLYMF-LARSAVDSAVYWSYRMKETEEFK 124 (148)
T ss_dssp TCHHHHHHH-HHHHHHHHHHHHHHHHHTSTTTT
T ss_pred CchHHHHHH-HHHHHHHHHHHHHHHhcchHHHH
Confidence 355677776 44455666789999988877663
Done!