BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028036
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EGC|B Chain B, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 294
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 37/224 (16%)
Query: 2 DATLTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFF 61
D + +VF+WD+DET+I+ SLL GTFA + KD V+IG M E I N+ D F
Sbjct: 20 DNEIERVFVWDLDETIIIFHSLLTGTFASRYG--KDTTTSVRIGLMMEEMIFNLADTHLF 77
Query: 62 YEQIENNNTPFLDALKQYDDGRDLSDYEFDRDGL--CPPFDDLSL-----------KKIA 108
+ +E+ + +D + D+G+DLS Y F DG P +L L +K+A
Sbjct: 78 FNDLEDCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAPGANLCLGSGVHGGVDWMRKLA 137
Query: 109 YRHRAIA---HKYKEGLQNIFDKEMLRVWDELYDMTDEYTDRWLSSARVLLEQCSSGKEV 165
+R+R + + YK + + W +L + TD WL+ + L +S
Sbjct: 138 FRYRRVKEMYNTYKNNVGGLIGTPKRETWLQLRAELEALTDLWLTHSLKALNLINS---- 193
Query: 166 XXXXXXXXXXXXXXXKSEHVNILVTSGSLIPSLVKCLLFRLDNL 209
+ VN+LVT+ LIP+L K LL+ L ++
Sbjct: 194 ---------------RPNCVNVLVTTTQLIPALAKVLLYGLGSV 222
>pdb|3HB0|A Chain A, Structure Of Edeya2 Complexed With Bef3
pdb|3HB0|B Chain B, Structure Of Edeya2 Complexed With Bef3
pdb|3HB0|C Chain C, Structure Of Edeya2 Complexed With Bef3
pdb|3HB0|D Chain D, Structure Of Edeya2 Complexed With Bef3
pdb|3HB1|A Chain A, Crystal Structure Of Ed-Eya2 Complexed With Alf3
pdb|3HB1|B Chain B, Crystal Structure Of Ed-Eya2 Complexed With Alf3
pdb|3HB1|C Chain C, Crystal Structure Of Ed-Eya2 Complexed With Alf3
pdb|3HB1|D Chain D, Crystal Structure Of Ed-Eya2 Complexed With Alf3
Length = 274
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 105/221 (47%), Gaps = 37/221 (16%)
Query: 5 LTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQ 64
+ +VF+WD+DET+I+ SLL GTFA + KD V+IG M E I N+ D F+
Sbjct: 3 MERVFVWDLDETIIIFHSLLTGTFASRYG--KDTTTSVRIGLMMEEMIFNLADTHLFFND 60
Query: 65 IENNNTPFLDALKQYDDGRDLSDYEFDRDGL--CPPFDDLSL-----------KKIAYRH 111
+E+ + +D + D+G+DLS Y F DG P +L L +K+A+R+
Sbjct: 61 LEDCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAPAANLCLGSGVHGGVDWMRKLAFRY 120
Query: 112 RAIA---HKYKEGLQNIFDKEMLRVWDELYDMTDEYTDRWLSSARVLLEQCSSGKEVXXX 168
R + + YK + + W +L + TD WL+ + L +S
Sbjct: 121 RRVKEMYNTYKNNVGGLIGTPKRETWLQLRAELEALTDLWLTHSLKALNLINS------- 173
Query: 169 XXXXXXXXXXXXKSEHVNILVTSGSLIPSLVKCLLFRLDNL 209
+ VN+LVT+ LIP+L K LL+ L ++
Sbjct: 174 ------------RPNCVNVLVTTTQLIPALAKVLLYGLGSV 202
>pdb|3GEB|A Chain A, Crystal Structure Of Edeya2
pdb|3GEB|B Chain B, Crystal Structure Of Edeya2
pdb|3GEB|C Chain C, Crystal Structure Of Edeya2
pdb|3GEB|D Chain D, Crystal Structure Of Edeya2
Length = 274
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 105/221 (47%), Gaps = 37/221 (16%)
Query: 5 LTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQ 64
+ +VF+WD+DET+I+ SLL GTFA + KD V+IG M E I N+ D F+
Sbjct: 3 MERVFVWDLDETIIIFHSLLTGTFASRYG--KDTTTSVRIGLMMEEMIFNLADTHLFFND 60
Query: 65 IENNNTPFLDALKQYDDGRDLSDYEFDRDGL--CPPFDDLSL-----------KKIAYRH 111
+E+ + +D + D+G+DLS Y F DG P +L L +K+A+R+
Sbjct: 61 LEDCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAPGANLCLGSGVHGGVDWMRKLAFRY 120
Query: 112 RAIA---HKYKEGLQNIFDKEMLRVWDELYDMTDEYTDRWLSSARVLLEQCSSGKEVXXX 168
R + + YK + + W +L + TD WL+ + L +S
Sbjct: 121 RRVKEMYNTYKNNVGGLIGTPKRETWLQLRAELEALTDLWLTHSLKALNLINS------- 173
Query: 169 XXXXXXXXXXXXKSEHVNILVTSGSLIPSLVKCLLFRLDNL 209
+ VN+LVT+ LIP+L K LL+ L ++
Sbjct: 174 ------------RPNCVNVLVTTTQLIPALAKVLLYGLGSV 202
>pdb|1II4|A Chain A, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|B Chain B, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|C Chain C, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|D Chain D, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|A Chain A, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|B Chain B, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|C Chain C, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|D Chain D, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 155
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 54 NVCDECFFYEQIENNN 69
+V DECFF+E++E+NN
Sbjct: 96 SVTDECFFFERLESNN 111
>pdb|1BAS|A Chain A, Three-Dimensional Structures Of Acidic And Basic
Fibroblast Growth Factors
Length = 154
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 54 NVCDECFFYEQIENNN 69
+V DECFF+E++E+NN
Sbjct: 95 SVTDECFFFERLESNN 110
>pdb|1BLA|A Chain A, Basic Fibroblast Growth Factor (Fgf-2) Mutant With Cys 78
Replaced By Ser And Cys 96 Replaced By Ser, Nmr
pdb|1BLD|A Chain A, Basic Fibroblast Growth Factor (Fgf-2) Mutant With Cys 78
Replaced By Ser And Cys 96 Replaced By Ser, Nmr
Length = 155
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 54 NVCDECFFYEQIENNN 69
+V DECFF+E++E+NN
Sbjct: 96 SVTDECFFFERLESNN 111
>pdb|1BFB|A Chain A, Basic Fibroblast Growth Factor Complexed With Heparin
Tetramer Fragment
pdb|1BFC|A Chain A, Basic Fibroblast Growth Factor Complexed With Heparin
Hexamer Fragment
Length = 147
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 54 NVCDECFFYEQIENNN 69
+V DECFF+E++E+NN
Sbjct: 88 SVTDECFFFERLESNN 103
>pdb|1BFG|A Chain A, Crystal Structure Of Basic Fibroblast Growth Factor At 1.6
Angstroms Resolution
Length = 146
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 54 NVCDECFFYEQIENNN 69
+V DECFF+E++E+NN
Sbjct: 87 SVTDECFFFERLESNN 102
>pdb|1CVS|A Chain A, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|B Chain B, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1EV2|A Chain A, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|B Chain B, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|C Chain C, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|D Chain D, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1FQ9|A Chain A, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin
Complex
pdb|1FQ9|B Chain B, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin
Complex
Length = 132
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 54 NVCDECFFYEQIENNN 69
+V DECFF+E++E+NN
Sbjct: 73 SVTDECFFFERLESNN 88
>pdb|1FGA|A Chain A, Refinement Of The Structure Of Human Basic Fibroblast
Growth Factor At 1.6 Angstroms Resolution And Analysis
Of Presumed Heparin Binding Sites By Selenate
Substitution
pdb|2FGF|A Chain A, Three-Dimensional Structure Of Human Basic Fibroblast
Growth Factor, A Structural Homolog Of Interleukin 1beta
pdb|4FGF|A Chain A, Refinement Of The Structure Of Human Basic Fibroblast
Growth Factor At 1.6 Angstroms Resolution And Analysis
Of Presumed Heparin Binding Sites By Selenate
Substitution
Length = 146
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 55 VCDECFFYEQIENNN 69
V DECFF+E++E+NN
Sbjct: 88 VTDECFFFERLESNN 102
>pdb|1XI7|A Chain A, Nmr Structure Of The Carboxyl-Terminal Cysteine Domain Of
The Vhv1.1 Polydnaviral Gene Product
pdb|1XJ1|A Chain A, 3d Solution Structure Of The C-Terminal Cysteine-Rich
Domain Of The Vhv1.1 Polydnaviral Gene Product
Length = 61
Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 62 YEQIENNNTPFLDALKQYDDGRDLSDYEFDRD--GLCPPFD 100
Y++ N + P +Y D +++ + DRD G+C PFD
Sbjct: 11 YQKCVNADKPCCSKTVRYGDSKNVRKFICDRDGEGVCVPFD 51
>pdb|1BFF|A Chain A, The 154 Amino Acid Form Of Human Basic Fibroblast Growth
Factor
Length = 129
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 55 VCDECFFYEQIENNN 69
V DECFF+E++E+NN
Sbjct: 71 VTDECFFFERLESNN 85
>pdb|2BFH|A Chain A, Crystal Structure Of Basic Fibroblast Growth Factor At
1.6 Angstroms Resolution
Length = 128
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 55 VCDECFFYEQIENNN 69
V DECFF+E++E+NN
Sbjct: 70 VTDECFFFERLESNN 84
>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCS|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
Length = 76
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 52 ILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRD 93
I NV + EQI + + A KQ +DGR LSDY ++
Sbjct: 23 IENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 113 AIAHKYKEGLQNIFDKEMLRVWDELYDMTDEYTDRW 148
A+AH Y E L + D+ ++ +D+ +D D D W
Sbjct: 305 ALAHPYFESLHDTEDEPQVQKYDDSFDDVDRTLDEW 340
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,438,869
Number of Sequences: 62578
Number of extensions: 254425
Number of successful extensions: 653
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 16
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)