Query 028036
Match_columns 215
No_of_seqs 69 out of 71
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:16:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01658 EYA-cons_domain eyes 100.0 5E-102 1E-106 686.2 18.8 206 5-214 1-206 (274)
2 KOG3107 Predicted haloacid deh 100.0 5.3E-83 1.1E-87 591.0 15.4 193 1-214 192-401 (468)
3 KOG3107 Predicted haloacid deh 87.9 0.49 1.1E-05 45.9 3.3 92 71-162 255-349 (468)
4 TIGR02250 FCP1_euk FCP1-like p 71.2 2.2 4.8E-05 35.2 1.4 17 6-22 6-22 (156)
5 COG0546 Gph Predicted phosphat 67.5 4.3 9.4E-05 34.3 2.4 48 6-55 4-58 (220)
6 TIGR01491 HAD-SF-IB-PSPlk HAD- 66.9 3.2 7E-05 33.3 1.4 18 6-23 4-21 (201)
7 TIGR02137 HSK-PSP phosphoserin 65.8 3.4 7.4E-05 35.2 1.4 24 7-33 2-25 (203)
8 TIGR01681 HAD-SF-IIIC HAD-supe 65.0 3.2 6.9E-05 32.5 1.0 12 7-18 1-12 (128)
9 PHA02597 30.2 hypothetical pro 64.2 3.2 7E-05 33.8 0.9 26 7-33 3-28 (197)
10 PRK10725 fructose-1-P/6-phosph 63.6 3.7 8E-05 32.8 1.2 25 7-31 6-30 (188)
11 PF05152 DUF705: Protein of un 58.2 5.5 0.00012 37.2 1.4 15 4-18 120-134 (297)
12 TIGR02253 CTE7 HAD superfamily 56.6 6.2 0.00013 32.4 1.4 20 7-26 3-22 (221)
13 TIGR01686 FkbH FkbH-like domai 55.3 6.9 0.00015 35.3 1.6 14 5-18 2-15 (320)
14 PRK14988 GMP/IMP nucleotidase; 54.8 5.8 0.00012 33.8 0.9 13 7-19 11-23 (224)
15 TIGR01549 HAD-SF-IA-v1 haloaci 54.6 4.9 0.00011 31.2 0.4 16 8-23 1-16 (154)
16 PLN02575 haloacid dehalogenase 53.7 11 0.00023 36.0 2.6 48 7-56 132-187 (381)
17 PF03031 NIF: NLI interacting 53.5 5.7 0.00012 31.5 0.7 16 8-23 2-17 (159)
18 TIGR01422 phosphonatase phosph 53.4 7 0.00015 33.3 1.2 16 7-22 3-18 (253)
19 TIGR03351 PhnX-like phosphonat 52.5 14 0.00031 30.4 2.9 25 7-31 2-26 (220)
20 TIGR02009 PGMB-YQAB-SF beta-ph 52.1 7.8 0.00017 30.7 1.2 23 7-29 2-24 (185)
21 TIGR01548 HAD-SF-IA-hyp1 haloa 51.9 6 0.00013 32.4 0.6 14 8-21 2-15 (197)
22 PRK13707 conjugal transfer pil 51.0 9.2 0.0002 30.1 1.5 28 4-31 17-44 (101)
23 PRK13288 pyrophosphatase PpaX; 50.5 9.3 0.0002 31.5 1.5 24 7-30 4-27 (214)
24 PF14824 Sirohm_synth_M: Siroh 48.9 19 0.00041 23.0 2.4 22 182-203 2-23 (30)
25 TIGR01993 Pyr-5-nucltdase pyri 47.9 9.6 0.00021 30.7 1.2 18 8-25 2-19 (184)
26 PF08411 Exonuc_X-T_C: Exonucl 47.8 27 0.00058 31.5 4.1 44 103-152 192-236 (269)
27 PRK10563 6-phosphogluconate ph 46.8 10 0.00022 31.3 1.2 23 7-29 5-27 (221)
28 PRK11590 hypothetical protein; 46.5 11 0.00023 31.7 1.3 14 5-18 5-18 (211)
29 TIGR02254 YjjG/YfnB HAD superf 46.2 11 0.00023 30.8 1.2 26 7-32 2-27 (224)
30 TIGR01454 AHBA_synth_RP 3-amin 44.6 9 0.0002 31.4 0.5 21 9-29 1-21 (205)
31 PF12710 HAD: haloacid dehalog 44.1 12 0.00026 29.7 1.1 17 9-25 1-17 (192)
32 TIGR01428 HAD_type_II 2-haloal 44.0 38 0.00083 27.4 4.1 25 7-32 2-26 (198)
33 PF07178 TraL: TraL protein; 43.5 12 0.00027 28.5 1.1 28 4-31 11-38 (95)
34 PRK15376 pathogenicity island 43.5 20 0.00044 36.1 2.8 55 84-141 499-560 (670)
35 PLN02954 phosphoserine phospha 43.4 12 0.00025 31.0 1.0 18 6-23 12-29 (224)
36 PRK13226 phosphoglycolate phos 41.8 12 0.00026 31.6 0.9 46 7-53 13-64 (229)
37 PRK13478 phosphonoacetaldehyde 41.6 13 0.00029 32.1 1.1 16 7-22 5-20 (267)
38 COG0637 Predicted phosphatase/ 41.4 13 0.00028 31.8 1.0 51 7-57 3-57 (221)
39 PLN02779 haloacid dehalogenase 41.2 13 0.00028 33.1 1.0 27 6-32 40-67 (286)
40 PRK13222 phosphoglycolate phos 39.9 34 0.00074 27.9 3.3 27 7-33 7-36 (226)
41 PRK11587 putative phosphatase; 39.5 14 0.00031 30.7 1.0 24 7-30 4-27 (218)
42 PLN03243 haloacid dehalogenase 39.2 16 0.00034 32.3 1.2 49 7-55 25-79 (260)
43 PLN02770 haloacid dehalogenase 39.0 16 0.00035 31.4 1.3 24 7-30 23-46 (248)
44 PRK13582 thrH phosphoserine ph 38.7 18 0.00039 29.4 1.4 12 7-18 2-13 (205)
45 TIGR01449 PGP_bact 2-phosphogl 38.4 13 0.00028 30.2 0.5 11 9-19 1-11 (213)
46 PF07026 DUF1317: Protein of u 37.9 37 0.00079 25.0 2.7 26 36-61 33-58 (60)
47 PRK13223 phosphoglycolate phos 37.8 17 0.00037 32.0 1.2 26 4-29 11-36 (272)
48 PRK09449 dUMP phosphatase; Pro 37.5 17 0.00038 30.0 1.2 12 7-18 4-15 (224)
49 PRK13225 phosphoglycolate phos 37.4 15 0.00033 32.7 0.9 28 6-33 62-92 (273)
50 PRK14839 undecaprenyl pyrophos 36.5 1E+02 0.0022 28.0 5.9 98 25-146 20-128 (239)
51 PRK10748 flavin mononucleotide 36.4 20 0.00043 30.6 1.4 24 7-30 11-34 (238)
52 TIGR00338 serB phosphoserine p 36.3 18 0.00038 29.8 1.0 17 7-23 15-31 (219)
53 TIGR02252 DREG-2 REG-2-like, H 36.0 17 0.00037 29.5 0.9 24 7-30 1-24 (203)
54 TIGR01489 DKMTPPase-SF 2,3-dik 35.9 19 0.00042 28.3 1.2 25 7-33 2-26 (188)
55 TIGR01509 HAD-SF-IA-v3 haloaci 35.7 14 0.0003 29.0 0.3 16 9-24 2-17 (183)
56 PLN02940 riboflavin kinase 35.6 43 0.00092 31.3 3.5 30 4-33 9-41 (382)
57 TIGR01990 bPGM beta-phosphoglu 35.2 17 0.00037 28.7 0.8 17 9-25 2-18 (185)
58 TIGR02251 HIF-SF_euk Dullard-l 33.8 17 0.00037 29.7 0.6 13 8-20 3-15 (162)
59 PF08812 YtxC: YtxC-like famil 33.0 3.4E+02 0.0074 23.8 9.0 123 44-192 14-146 (221)
60 TIGR02834 spo_ytxC putative sp 33.0 3.3E+02 0.0073 25.0 8.8 124 44-193 72-204 (276)
61 TIGR01493 HAD-SF-IA-v2 Haloaci 32.8 21 0.00046 28.2 1.0 24 8-31 1-24 (175)
62 TIGR01490 HAD-SF-IB-hyp1 HAD-s 32.8 17 0.00036 29.5 0.3 16 9-24 2-17 (202)
63 TIGR01488 HAD-SF-IB Haloacid D 31.9 19 0.00041 28.3 0.5 15 9-23 2-16 (177)
64 PRK14837 undecaprenyl pyrophos 31.5 1.5E+02 0.0033 26.6 6.2 97 25-145 17-124 (230)
65 TIGR02762 TraL_TIGR type IV co 30.6 35 0.00076 26.3 1.8 27 4-30 11-37 (95)
66 PRK09552 mtnX 2-hydroxy-3-keto 30.5 25 0.00053 29.5 1.0 19 6-24 3-21 (219)
67 PF04068 RLI: Possible Fer4-li 30.1 34 0.00074 22.2 1.4 9 7-15 2-10 (35)
68 PRK10826 2-deoxyglucose-6-phos 28.1 33 0.00072 28.5 1.4 23 6-28 7-29 (222)
69 KOG0942 E3 ubiquitin protein l 28.0 2E+02 0.0042 31.3 7.1 91 44-138 738-873 (1001)
70 KOG4571 Activating transcripti 27.9 76 0.0016 29.8 3.8 29 104-147 234-263 (294)
71 cd02188 gamma_tubulin Gamma-tu 27.8 98 0.0021 29.8 4.6 63 3-72 57-131 (431)
72 cd01427 HAD_like Haloacid deha 26.7 25 0.00053 25.2 0.3 18 8-25 1-18 (139)
73 PRK11133 serB phosphoserine ph 26.7 32 0.00069 31.7 1.1 16 6-21 110-125 (322)
74 TIGR02247 HAD-1A3-hyp Epoxide 25.1 38 0.00082 27.7 1.2 15 7-21 3-17 (211)
75 TIGR01545 YfhB_g-proteo haloac 25.0 35 0.00075 29.1 1.0 20 5-24 4-23 (210)
76 TIGR01672 AphA HAD superfamily 25.0 37 0.0008 30.1 1.2 13 7-19 64-76 (237)
77 KOG1089 Myotubularin-related p 23.0 78 0.0017 32.2 3.1 45 145-203 319-369 (573)
78 TIGR00756 PPR pentatricopeptid 22.4 1.1E+02 0.0023 17.0 2.5 27 19-50 2-28 (35)
79 PHA03398 viral phosphatase sup 21.8 47 0.001 31.2 1.2 19 4-22 126-144 (303)
80 TIGR01684 viral_ppase viral ph 21.5 52 0.0011 30.8 1.4 19 4-22 124-142 (301)
81 PRK14842 undecaprenyl pyrophos 21.4 2.8E+02 0.0062 25.0 6.1 95 25-143 19-124 (241)
82 PRK06698 bifunctional 5'-methy 21.2 34 0.00074 32.4 0.2 17 7-23 242-258 (459)
83 PRK01158 phosphoglycolate phos 21.2 53 0.0012 27.1 1.3 13 7-19 4-16 (230)
84 PF01115 F_actin_cap_B: F-acti 20.6 42 0.0009 30.6 0.6 21 3-23 115-140 (242)
85 PF06917 Pectate_lyase_2: Peri 20.5 2.4E+02 0.0051 28.8 5.8 82 80-161 357-471 (557)
86 PF03767 Acid_phosphat_B: HAD 20.4 62 0.0013 28.2 1.6 18 6-24 72-89 (229)
No 1
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=100.00 E-value=4.8e-102 Score=686.20 Aligned_cols=206 Identities=57% Similarity=0.975 Sum_probs=199.9
Q ss_pred ceEEEEeeCcchhhhhhhhcchhhhhhcCCCCChHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCcccccccccCCCCCC
Q 028036 5 LTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRD 84 (215)
Q Consensus 5 l~rVFIWDLDETiIif~SLLtGsyA~~~~~~KD~~~~v~LG~r~EelIf~l~D~hfFf~dlE~cd~~hiddvs~~DnG~D 84 (215)
++||||||||||||||||||||+||++|+|+|||+++++||+|||+|||+|||+||||||||||||||||||++||||||
T Consensus 1 ~e~VfvWDlDETlIif~SLL~GsyA~~f~g~KD~~~~v~lG~r~E~lIl~l~D~~fFf~~lEe~dq~~lddv~~~DdG~D 80 (274)
T TIGR01658 1 PENVYVWDMDETLILLHSLLNGSYAESFNGSKDHKRGVEIGRRWEEMILEICDTHFFYEEIEECNEPFLDDVRSYDDGKD 80 (274)
T ss_pred CceeEEEeccchHHHHHHhhcchHHHHcCCCcCcHHHHHHHHHHHHHHHHHHHhhhhhhhHHhcCccchhhhhhcccccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHhcCccccCChhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCc
Q 028036 85 LSDYEFDRDGLCPPFDDLSLKKIAYRHRAIAHKYKEGLQNIFDKEMLRVWDELYDMTDEYTDRWLSSARVLLEQCSSGKE 164 (215)
Q Consensus 85 LS~y~F~~dgf~~~~~~~n~RKLA~ryR~I~e~Y~~~l~~LL~~~~~~~w~~l~~~~d~~Td~WLs~A~k~L~~i~~~~~ 164 (215)
||+|+|++|||++|.++.|+||||||||+|+|+|+++|++||+|++++.|++||++||.+||+|||+|+|||++|++..+
T Consensus 81 Ls~Y~F~~D~f~~p~~~~~~rKLAyR~R~I~e~Y~~~v~~lL~~~~~~~w~~L~~e~d~~TD~WLs~A~k~l~~~~~~~~ 160 (274)
T TIGR01658 81 LSRYEFKTDGFSTPTDDLNKRKLAYRHRAVAEIYEKGLGPLLDPESMEALDELYSETDVYTDRWLSSALKFLEQCSCVEE 160 (274)
T ss_pred ccccccccccCCCCccchhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred ccccccccCcccCCCCCcceeEEEecCCcchHHHHHHHHhhcCcccccCC
Q 028036 165 VSTSSLGLASLDSADTKSEHVNILVTSGSLIPSLVKCLLFRLDNLITHGN 214 (215)
Q Consensus 165 ~~t~~~~~~~~~~~~sr~~~vNVLVTs~qLVPaLaK~LLy~L~~~f~ieN 214 (215)
+++ .++++.+++|++|||||||||||||||||||||+||++|||||
T Consensus 161 ~~~----~~~~~~i~sr~~~vNvLVTs~qLVPaLaKcLLy~L~~~f~ieN 206 (274)
T TIGR01658 161 SSD----GTSLIEISSRDNCINVLVTSGQLIPSLAKCLLFRLDTIFRIEN 206 (274)
T ss_pred ccc----ccchhccccCCceeEEEEEcCccHHHHHHHHHhccCCcccccc
Confidence 433 4677889999999999999999999999999999999999999
No 2
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=100.00 E-value=5.3e-83 Score=591.02 Aligned_cols=193 Identities=36% Similarity=0.612 Sum_probs=186.6
Q ss_pred CCCCceEEEEeeCcchhhhhhhhcchhhhhhcCCCCChHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCcccccccccCC
Q 028036 1 MDATLTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYD 80 (215)
Q Consensus 1 ~d~~l~rVFIWDLDETiIif~SLLtGsyA~~~~~~KD~~~~v~LG~r~EelIf~l~D~hfFf~dlE~cd~~hiddvs~~D 80 (215)
+|+++|||||||||||||||||||+|+||++|+ |||..++++|+|||+|||++||+||||||||||||||||||++||
T Consensus 192 ~ds~~eRVFiWDlDEtiIifhslL~gsya~~y~--kd~~~~v~ig~~mE~mifn~aDth~F~ndleecdq~~vDdvs~dD 269 (468)
T KOG3107|consen 192 GDSTLERVFIWDLDETIIIFHSLLTGSYATRYG--KDPRAAVSIGLMMEEMIFNLADTHLFFNDLEECDQVHVDDVSSDD 269 (468)
T ss_pred CCCcceeEEEeeccchHHHHHHHhhhhhhhhcc--CCchhhhHHHHHHHHHHHHhhhHHHHHHHHhhhcccccccccccC
Confidence 489999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCC--------------CchhhHHHHHHHHHHHHHH---hcCccccCChhHHHHHHHHHhhhhh
Q 028036 81 DGRDLSDYEFDRDGLCPPF--------------DDLSLKKIAYRHRAIAHKY---KEGLQNIFDKEMLRVWDELYDMTDE 143 (215)
Q Consensus 81 nG~DLS~y~F~~dgf~~~~--------------~~~n~RKLA~ryR~I~e~Y---~~~l~~LL~~~~~~~w~~l~~~~d~ 143 (215)
||||||.|+|.+|||+++. +..||||||||||+++|+| ++|++++++|.+|+.|.+|+++||.
T Consensus 270 ngqdLs~y~f~~d~fsa~~~~~~~l~~~~~v~g~vd~mr~laFr~re~~e~~~~y~nnv~~l~~p~~~eaw~~lr~~~ev 349 (468)
T KOG3107|consen 270 NGQDLSTYNFVTDGFSAFTAFSANLCLKTGVRGGVDWMRKLAFRYREVKEIYNTYKNNVGGLTGPNKREAWLQLRAEIEV 349 (468)
T ss_pred CcccccceeeccCCCcCcCccccccccccccchhhhhhhccchhhHHHHHHHHHHHhhhhcccCchhhHHHHHHHHHHHH
Confidence 9999999999999999853 3578999999999999876 8999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcCCcccccccccCcccCCCCCcceeEEEecCCcchHHHHHHHHhhcCcccccCC
Q 028036 144 YTDRWLSSARVLLEQCSSGKEVSTSSLGLASLDSADTKSEHVNILVTSGSLIPSLVKCLLFRLDNLITHGN 214 (215)
Q Consensus 144 ~Td~WLs~A~k~L~~i~~~~~~~t~~~~~~~~~~~~sr~~~vNVLVTs~qLVPaLaK~LLy~L~~~f~ieN 214 (215)
.||+||++|+|+|++|++ |.||||||||||||||+||||||||||++|||||
T Consensus 350 ~tdsw~tsaLka~s~i~s-------------------r~ncvnVlvTttqLipalaKvLL~gLg~~fpiEN 401 (468)
T KOG3107|consen 350 LTDSWLTSALKALSLISS-------------------RKNCVNVLVTTTQLIPALAKVLLYGLGSSFPIEN 401 (468)
T ss_pred hhhhhhhhHHHHHhhhhc-------------------ccceeEEEEeccchhHHHHHHHHHhcCCcccchh
Confidence 999999999999999985 7799999999999999999999999999999999
No 3
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=87.88 E-value=0.49 Score=45.89 Aligned_cols=92 Identities=8% Similarity=-0.087 Sum_probs=70.2
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCchh---hHHHHHHHHHHHHHHhcCccccCChhHHHHHHHHHhhhhhhhhH
Q 028036 71 PFLDALKQYDDGRDLSDYEFDRDGLCPPFDDLS---LKKIAYRHRAIAHKYKEGLQNIFDKEMLRVWDELYDMTDEYTDR 147 (215)
Q Consensus 71 ~hiddvs~~DnG~DLS~y~F~~dgf~~~~~~~n---~RKLA~ryR~I~e~Y~~~l~~LL~~~~~~~w~~l~~~~d~~Td~ 147 (215)
..+|++--||--+|=.--+-+.-.|..+.-.++ .-+|++|++...++|.++.-....-+-|+..+..++.++.+|+.
T Consensus 255 eecdq~~vDdvs~dDngqdLs~y~f~~d~fsa~~~~~~~l~~~~~v~g~vd~mr~laFr~re~~e~~~~y~nnv~~l~~p 334 (468)
T KOG3107|consen 255 EECDQVHVDDVSSDDNGQDLSTYNFVTDGFSAFTAFSANLCLKTGVRGGVDWMRKLAFRYREVKEIYNTYKNNVGGLTGP 334 (468)
T ss_pred hhhcccccccccccCCcccccceeeccCCCcCcCccccccccccccchhhhhhhccchhhHHHHHHHHHHHhhhhcccCc
Confidence 344555555433332222344455666665663 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 028036 148 WLSSARVLLEQCSSG 162 (215)
Q Consensus 148 WLs~A~k~L~~i~~~ 162 (215)
|+..|+.||+.|.+.
T Consensus 335 ~~~eaw~~lr~~~ev 349 (468)
T KOG3107|consen 335 NKREAWLQLRAEIEV 349 (468)
T ss_pred hhhHHHHHHHHHHHH
Confidence 999999999988763
No 4
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=71.21 E-value=2.2 Score=35.16 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=13.0
Q ss_pred eEEEEeeCcchhhhhhh
Q 028036 6 TKVFIWDMDETLILLKS 22 (215)
Q Consensus 6 ~rVFIWDLDETiIif~S 22 (215)
+.+-|+|||||||=-..
T Consensus 6 kl~LVLDLDeTLihs~~ 22 (156)
T TIGR02250 6 KLHLVLDLDQTLIHTTK 22 (156)
T ss_pred ceEEEEeCCCCcccccc
Confidence 45779999999984433
No 5
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=67.46 E-value=4.3 Score=34.30 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=30.8
Q ss_pred eEEEEeeCcchhhhhhhhcchhhh---hhcCCCCChHHHHH----HHHHHHHHHHHH
Q 028036 6 TKVFIWDMDETLILLKSLLNGTFA---QSFNDLKDADKGVQ----IGRMWENHILNV 55 (215)
Q Consensus 6 ~rVFIWDLDETiIif~SLLtGsyA---~~~~~~KD~~~~v~----LG~r~EelIf~l 55 (215)
.++.|||||.||+=....+..++. ++++ .++..... +|.-..++|..+
T Consensus 4 ~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ig~~~~~~~~~~ 58 (220)
T COG0546 4 IKAILFDLDGTLVDSAEDILRAFNAALAELG--LPPLDEEEIRQLIGLGLDELIERL 58 (220)
T ss_pred CCEEEEeCCCccccChHHHHHHHHHHHHHcC--CCCCCHHHHHHHhcCCHHHHHHHH
Confidence 368899999999998888887544 5554 33222222 455555555544
No 6
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=66.86 E-value=3.2 Score=33.29 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=14.4
Q ss_pred eEEEEeeCcchhhhhhhh
Q 028036 6 TKVFIWDMDETLILLKSL 23 (215)
Q Consensus 6 ~rVFIWDLDETiIif~SL 23 (215)
.+..|||||.|||=..+.
T Consensus 4 ~k~viFD~DGTLid~~~~ 21 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVMSS 21 (201)
T ss_pred ceEEEEeCCCCCcCCccH
Confidence 468999999999975554
No 7
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=65.84 E-value=3.4 Score=35.23 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=17.8
Q ss_pred EEEEeeCcchhhhhhhhcchhhhhhcC
Q 028036 7 KVFIWDMDETLILLKSLLNGTFAQSFN 33 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~~~~ 33 (215)
|+.++|||+|||=- + -.-|+.+.|
T Consensus 2 ~la~FDlD~TLi~~--~-w~~~~~~~g 25 (203)
T TIGR02137 2 EIACLDLEGVLVPE--I-WIAFAEKTG 25 (203)
T ss_pred eEEEEeCCcccHHH--H-HHHHHHHcC
Confidence 67899999999943 2 356777664
No 8
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=65.01 E-value=3.2 Score=32.53 Aligned_cols=12 Identities=50% Similarity=0.891 Sum_probs=11.0
Q ss_pred EEEEeeCcchhh
Q 028036 7 KVFIWDMDETLI 18 (215)
Q Consensus 7 rVFIWDLDETiI 18 (215)
++++||||.||.
T Consensus 1 kli~~DlD~Tl~ 12 (128)
T TIGR01681 1 KVIVFDLDNTLW 12 (128)
T ss_pred CEEEEeCCCCCC
Confidence 579999999998
No 9
>PHA02597 30.2 hypothetical protein; Provisional
Probab=64.19 E-value=3.2 Score=33.82 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=18.8
Q ss_pred EEEEeeCcchhhhhhhhcchhhhhhcC
Q 028036 7 KVFIWDMDETLILLKSLLNGTFAQSFN 33 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~~~~ 33 (215)
+.+|||||.|||=+..-+. ...++|+
T Consensus 3 k~viFDlDGTLiD~~~~~~-~~~~~~g 28 (197)
T PHA02597 3 PTILTDVDGVLLSWQSGLP-YFAQKYN 28 (197)
T ss_pred cEEEEecCCceEchhhccH-HHHHhcC
Confidence 5799999999998776554 2334564
No 10
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=63.57 E-value=3.7 Score=32.84 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=16.9
Q ss_pred EEEEeeCcchhhhhhhhcchhhhhh
Q 028036 7 KVFIWDMDETLILLKSLLNGTFAQS 31 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~~ 31 (215)
++.|||||.|||=......-++.+.
T Consensus 6 ~~viFD~DGTLiDs~~~~~~a~~~~ 30 (188)
T PRK10725 6 AGLIFDMDGTILDTEPTHRKAWREV 30 (188)
T ss_pred eEEEEcCCCcCccCHHHHHHHHHHH
Confidence 4679999999997655444444433
No 11
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=58.20 E-value=5.5 Score=37.20 Aligned_cols=15 Identities=40% Similarity=0.718 Sum_probs=13.2
Q ss_pred CceEEEEeeCcchhh
Q 028036 4 TLTKVFIWDMDETLI 18 (215)
Q Consensus 4 ~l~rVFIWDLDETiI 18 (215)
+.+.|-|+|||+|||
T Consensus 120 ~~phVIVfDlD~TLI 134 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLI 134 (297)
T ss_pred CCCcEEEEECCCccc
Confidence 457799999999999
No 12
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=56.61 E-value=6.2 Score=32.39 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=16.2
Q ss_pred EEEEeeCcchhhhhhhhcch
Q 028036 7 KVFIWDMDETLILLKSLLNG 26 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtG 26 (215)
++.|||||.||+=......-
T Consensus 3 ~~viFDlDGTL~ds~~~~~~ 22 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSGLAEK 22 (221)
T ss_pred eEEEEeCCCCCcCCCCccCH
Confidence 57899999999987766543
No 13
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=55.35 E-value=6.9 Score=35.26 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=12.4
Q ss_pred ceEEEEeeCcchhh
Q 028036 5 LTKVFIWDMDETLI 18 (215)
Q Consensus 5 l~rVFIWDLDETiI 18 (215)
..+++|||||.||.
T Consensus 2 ~~k~~v~DlDnTlw 15 (320)
T TIGR01686 2 ALKVLVLDLDNTLW 15 (320)
T ss_pred CeEEEEEcCCCCCC
Confidence 56899999999995
No 14
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=54.79 E-value=5.8 Score=33.79 Aligned_cols=13 Identities=38% Similarity=0.537 Sum_probs=11.9
Q ss_pred EEEEeeCcchhhh
Q 028036 7 KVFIWDMDETLIL 19 (215)
Q Consensus 7 rVFIWDLDETiIi 19 (215)
+++|||||.||+=
T Consensus 11 k~vIFDlDGTL~d 23 (224)
T PRK14988 11 DTVLLDMDGTLLD 23 (224)
T ss_pred CEEEEcCCCCccc
Confidence 6799999999987
No 15
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=54.61 E-value=4.9 Score=31.17 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=12.7
Q ss_pred EEEeeCcchhhhhhhh
Q 028036 8 VFIWDMDETLILLKSL 23 (215)
Q Consensus 8 VFIWDLDETiIif~SL 23 (215)
++|||+|.||+=....
T Consensus 1 ~iifD~DGTL~d~~~~ 16 (154)
T TIGR01549 1 AILFDIDGTLVDSSFA 16 (154)
T ss_pred CeEecCCCcccccHHH
Confidence 4799999999876533
No 16
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=53.68 E-value=11 Score=36.03 Aligned_cols=48 Identities=23% Similarity=0.101 Sum_probs=27.5
Q ss_pred EEEEeeCcchhhh----hhhhcchhhhhhcCCCCChHHH----HHHHHHHHHHHHHHh
Q 028036 7 KVFIWDMDETLIL----LKSLLNGTFAQSFNDLKDADKG----VQIGRMWENHILNVC 56 (215)
Q Consensus 7 rVFIWDLDETiIi----f~SLLtGsyA~~~~~~KD~~~~----v~LG~r~EelIf~l~ 56 (215)
+.+|||||.|||= ++.-..-.+++.+| .++... .-.|+.+++.+-.++
T Consensus 132 ~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G--~~~~~~e~~~~~~G~~~~~~l~~ll 187 (381)
T PLN02575 132 LGAIFEWEGVIIEDNPDLENQAWLTLAQEEG--KSPPPAFILRRVEGMKNEQAISEVL 187 (381)
T ss_pred CEEEEcCcCcceeCHHHHHHHHHHHHHHHcC--CCCCHHHHHHHhcCCCHHHHHHHHh
Confidence 4589999999993 33222234566775 333222 234666666655543
No 17
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=53.54 E-value=5.7 Score=31.47 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=11.0
Q ss_pred EEEeeCcchhhhhhhh
Q 028036 8 VFIWDMDETLILLKSL 23 (215)
Q Consensus 8 VFIWDLDETiIif~SL 23 (215)
.-|+|||||||--...
T Consensus 2 ~LVlDLD~TLv~~~~~ 17 (159)
T PF03031_consen 2 TLVLDLDGTLVHSSSK 17 (159)
T ss_dssp EEEEE-CTTTEEEESS
T ss_pred EEEEeCCCcEEEEeec
Confidence 4689999998865543
No 18
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=53.36 E-value=7 Score=33.29 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.3
Q ss_pred EEEEeeCcchhhhhhh
Q 028036 7 KVFIWDMDETLILLKS 22 (215)
Q Consensus 7 rVFIWDLDETiIif~S 22 (215)
+.+|||||.|||=+.+
T Consensus 3 k~viFD~DGTLiDs~~ 18 (253)
T TIGR01422 3 EAVIFDWAGTTVDFGS 18 (253)
T ss_pred eEEEEeCCCCeecCCC
Confidence 5789999999997644
No 19
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=52.53 E-value=14 Score=30.40 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=17.9
Q ss_pred EEEEeeCcchhhhhhhhcchhhhhh
Q 028036 7 KVFIWDMDETLILLKSLLNGTFAQS 31 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~~ 31 (215)
++.|||||.||+-......-.|.+.
T Consensus 2 k~iiFD~DGTL~ds~~~~~~~~~~~ 26 (220)
T TIGR03351 2 SLVVLDMAGTTVDEDGLVYRALRQA 26 (220)
T ss_pred cEEEEecCCCeeccCchHHHHHHHH
Confidence 4679999999997666555554433
No 20
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=52.07 E-value=7.8 Score=30.70 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=16.7
Q ss_pred EEEEeeCcchhhhhhhhcchhhh
Q 028036 7 KVFIWDMDETLILLKSLLNGTFA 29 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA 29 (215)
++.|||||.||+=......-.+.
T Consensus 2 ~~iiFD~DGTL~ds~~~~~~~~~ 24 (185)
T TIGR02009 2 KAVIFDMDGVIVDTAPLHAQAWK 24 (185)
T ss_pred CeEEEcCCCcccCChHHHHHHHH
Confidence 57899999999877665443333
No 21
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=51.89 E-value=6 Score=32.38 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=10.9
Q ss_pred EEEeeCcchhhhhh
Q 028036 8 VFIWDMDETLILLK 21 (215)
Q Consensus 8 VFIWDLDETiIif~ 21 (215)
..|||||.|||=..
T Consensus 2 ~viFD~DGTLiDs~ 15 (197)
T TIGR01548 2 ALVLDMDGVMADVS 15 (197)
T ss_pred ceEEecCceEEech
Confidence 35999999999443
No 22
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=50.98 E-value=9.2 Score=30.09 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=21.6
Q ss_pred CceEEEEeeCcchhhhhhhhcchhhhhh
Q 028036 4 TLTKVFIWDMDETLILLKSLLNGTFAQS 31 (215)
Q Consensus 4 ~l~rVFIWDLDETiIif~SLLtGsyA~~ 31 (215)
+=+|++.|++||-++++=.+.=|=.++.
T Consensus 17 ~~~ri~~~~~DE~~~~~~~~~~Gi~~~~ 44 (101)
T PRK13707 17 NQSRWFGLPLDELIPAAICIGWGITTSK 44 (101)
T ss_pred CCCeEEeeeHHHHHHHHHHHHHHHHHch
Confidence 4579999999999988777665555554
No 23
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=50.48 E-value=9.3 Score=31.52 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=17.6
Q ss_pred EEEEeeCcchhhhhhhhcchhhhh
Q 028036 7 KVFIWDMDETLILLKSLLNGTFAQ 30 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~ 30 (215)
+..|||||.||+=......-.+.+
T Consensus 4 ~~viFD~DGTL~ds~~~~~~a~~~ 27 (214)
T PRK13288 4 NTVLFDLDGTLINTNELIISSFLH 27 (214)
T ss_pred cEEEEeCCCcCccCHHHHHHHHHH
Confidence 578999999999776655554443
No 24
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=48.87 E-value=19 Score=23.01 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=17.6
Q ss_pred cceeEEEecCCcchHHHHHHHH
Q 028036 182 SEHVNILVTSGSLIPSLVKCLL 203 (215)
Q Consensus 182 ~~~vNVLVTs~qLVPaLaK~LL 203 (215)
...+.|.|+|+--.|.|||.+=
T Consensus 2 ~g~LqI~ISTnG~sP~la~~iR 23 (30)
T PF14824_consen 2 RGPLQIAISTNGKSPRLARLIR 23 (30)
T ss_dssp -TTEEEEEEESSS-HHHHHHHH
T ss_pred CCCeEEEEECCCCChHHHHHHH
Confidence 3568899999999999999763
No 25
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=47.92 E-value=9.6 Score=30.69 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=13.3
Q ss_pred EEEeeCcchhhhhhhhcc
Q 028036 8 VFIWDMDETLILLKSLLN 25 (215)
Q Consensus 8 VFIWDLDETiIif~SLLt 25 (215)
++|||||.||+=......
T Consensus 2 ~viFDlDGTL~ds~~~~~ 19 (184)
T TIGR01993 2 VWFFDLDNTLYPHSAGIF 19 (184)
T ss_pred eEEEeCCCCCCCCcccHH
Confidence 689999999995543333
No 26
>PF08411 Exonuc_X-T_C: Exonuclease C-terminal; InterPro: IPR013620 This bacterial domain is found at the C terminus of exodeoxyribonuclease I/Exonuclease I (IPR013520 from INTERPRO), which is a single-strand specific DNA nuclease affecting recombination and expression pathways. The exonuclease I protein in Escherichia coli is associated with DNA deoxyribophosphodiesterase (dRPase) []. ; GO: 0008852 exodeoxyribonuclease I activity, 0006281 DNA repair; PDB: 2QXF_A 3C94_A 3HL8_A 3C95_A 1FXX_A 3HP9_A.
Probab=47.84 E-value=27 Score=31.51 Aligned_cols=44 Identities=20% Similarity=0.455 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHhcCccccCChhHHHHHHHHHhh-hhhhhhHHHHHH
Q 028036 103 SLKKIAYRHRAIAHKYKEGLQNIFDKEMLRVWDELYDM-TDEYTDRWLSSA 152 (215)
Q Consensus 103 n~RKLA~ryR~I~e~Y~~~l~~LL~~~~~~~w~~l~~~-~d~~Td~WLs~A 152 (215)
-++.|+||||. .|....|++++++.|.+.+.. +-...++|++..
T Consensus 192 RL~eLlfRyra------RN~P~tL~~~E~~~W~~~~~~rL~~~~~~~~tl~ 236 (269)
T PF08411_consen 192 RLPELLFRYRA------RNFPETLSEEEQQRWQEYCQQRLTDPDGGWLTLE 236 (269)
T ss_dssp HHHHHHHHHHH------HH-GGG--HHHHHHHHHHHHHHS-HHH-----HH
T ss_pred hHHHHHHHHHH------hcChhhCCHHHHHHHHHHHHHHccCCccchHHHH
Confidence 35788888874 578889999999999986543 333336787765
No 27
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=46.77 E-value=10 Score=31.33 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=16.8
Q ss_pred EEEEeeCcchhhhhhhhcchhhh
Q 028036 7 KVFIWDMDETLILLKSLLNGTFA 29 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA 29 (215)
+..|||+|.|||=...+..-.|.
T Consensus 5 ~~viFD~DGTL~d~~~~~~~a~~ 27 (221)
T PRK10563 5 EAVFFDCDGTLVDSEVICSRAYV 27 (221)
T ss_pred CEEEECCCCCCCCChHHHHHHHH
Confidence 57799999999987666444333
No 28
>PRK11590 hypothetical protein; Provisional
Probab=46.48 E-value=11 Score=31.70 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=12.4
Q ss_pred ceEEEEeeCcchhh
Q 028036 5 LTKVFIWDMDETLI 18 (215)
Q Consensus 5 l~rVFIWDLDETiI 18 (215)
-.++.|+|+|.||+
T Consensus 5 ~~k~~iFD~DGTL~ 18 (211)
T PRK11590 5 ERRVVFFDLDGTLH 18 (211)
T ss_pred cceEEEEecCCCCc
Confidence 35789999999999
No 29
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=46.24 E-value=11 Score=30.77 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=19.0
Q ss_pred EEEEeeCcchhhhhhhhcchhhhhhc
Q 028036 7 KVFIWDMDETLILLKSLLNGTFAQSF 32 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~~~ 32 (215)
+..|||||.|||=.++...-.+.+.+
T Consensus 2 k~viFD~DGTL~d~~~~~~~~~~~~~ 27 (224)
T TIGR02254 2 KTLLFDLDDTILDFQAAEALALRLLF 27 (224)
T ss_pred CEEEEcCcCcccccchHHHHHHHHHH
Confidence 56899999999988776654444433
No 30
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=44.63 E-value=9 Score=31.38 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=14.9
Q ss_pred EEeeCcchhhhhhhhcchhhh
Q 028036 9 FIWDMDETLILLKSLLNGTFA 29 (215)
Q Consensus 9 FIWDLDETiIif~SLLtGsyA 29 (215)
.|||||.||+=-.....-.+.
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~ 21 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFA 21 (205)
T ss_pred CeecCcCccccCHHHHHHHHH
Confidence 389999999865555555444
No 31
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=44.12 E-value=12 Score=29.66 Aligned_cols=17 Identities=35% Similarity=0.296 Sum_probs=13.4
Q ss_pred EEeeCcchhhhhhhhcc
Q 028036 9 FIWDMDETLILLKSLLN 25 (215)
Q Consensus 9 FIWDLDETiIif~SLLt 25 (215)
.|||+|.||+--.+.+.
T Consensus 1 v~fD~DGTL~~~~~~f~ 17 (192)
T PF12710_consen 1 VIFDFDGTLTDSDSGFL 17 (192)
T ss_dssp EEEESBTTTBSSHHHHH
T ss_pred eEEecCcCeecCCCchh
Confidence 58999999998875443
No 32
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=44.02 E-value=38 Score=27.43 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEeeCcchhhhhhhhcchhhhhhc
Q 028036 7 KVFIWDMDETLILLKSLLNGTFAQSF 32 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~~~ 32 (215)
++.|+|||.|||=+.++ .-.+.+.+
T Consensus 2 k~viFD~dgTLiD~~~~-~~~~~~~~ 26 (198)
T TIGR01428 2 KALVFDVYGTLFDVHSV-VERFAELY 26 (198)
T ss_pred cEEEEeCCCcCccHHHH-HHHHHHHh
Confidence 46899999999998886 33455555
No 33
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=43.55 E-value=12 Score=28.49 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=22.1
Q ss_pred CceEEEEeeCcchhhhhhhhcchhhhhh
Q 028036 4 TLTKVFIWDMDETLILLKSLLNGTFAQS 31 (215)
Q Consensus 4 ~l~rVFIWDLDETiIif~SLLtGsyA~~ 31 (215)
+-.|++.|++||-++.+-.+.-|-..+.
T Consensus 11 ~p~~il~~~~De~~~~~~~~~~gi~~~~ 38 (95)
T PF07178_consen 11 DPPRILFWPMDEFIPALILFVIGILSGH 38 (95)
T ss_pred CcceeeeecHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999998888777655544
No 34
>PRK15376 pathogenicity island 1 effector protein SipA; Provisional
Probab=43.46 E-value=20 Score=36.15 Aligned_cols=55 Identities=11% Similarity=0.305 Sum_probs=41.9
Q ss_pred CCCCCCCCCCCCCCCC-CchhhHHHHHHHHHHHHHHhcCccccCChh------HHHHHHHHHhhh
Q 028036 84 DLSDYEFDRDGLCPPF-DDLSLKKIAYRHRAIAHKYKEGLQNIFDKE------MLRVWDELYDMT 141 (215)
Q Consensus 84 DLS~y~F~~dgf~~~~-~~~n~RKLA~ryR~I~e~Y~~~l~~LL~~~------~~~~w~~l~~~~ 141 (215)
..|.-.|.++||-+.. ..++||.++|--| |.+-.-+.+-|.|+ +|.++..||++|
T Consensus 499 ~FsglkFkqng~L~~iPs~t~m~~m~~~~R---e~fL~vvR~ALEP~astP~~~RRaFd~LRaeI 560 (670)
T PRK15376 499 PFSGLKFKQNSFLSTVPSVTNMHSMHFDAR---ETFLGVIRKALEPDTSTPFPVRRAFDGLRAEI 560 (670)
T ss_pred CCCcceeccCCceeecchhhhhhhcccchH---HHHHHHHHhhcCcccCCcchHHHHHHHHHhhc
Confidence 4677779999997644 4789999999555 66666666666665 888999999887
No 35
>PLN02954 phosphoserine phosphatase
Probab=43.40 E-value=12 Score=31.00 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=15.1
Q ss_pred eEEEEeeCcchhhhhhhh
Q 028036 6 TKVFIWDMDETLILLKSL 23 (215)
Q Consensus 6 ~rVFIWDLDETiIif~SL 23 (215)
.+++|+|||.||+--.++
T Consensus 12 ~k~viFDfDGTL~~~~~~ 29 (224)
T PLN02954 12 ADAVCFDVDSTVCVDEGI 29 (224)
T ss_pred CCEEEEeCCCcccchHHH
Confidence 368899999999987665
No 36
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=41.84 E-value=12 Score=31.64 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=25.1
Q ss_pred EEEEeeCcchhhhhhhhcchhh---hhhcCCCCCh--HHH-HHHHHHHHHHHH
Q 028036 7 KVFIWDMDETLILLKSLLNGTF---AQSFNDLKDA--DKG-VQIGRMWENHIL 53 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsy---A~~~~~~KD~--~~~-v~LG~r~EelIf 53 (215)
+.+|||||.|||=......-.+ ...|+ .+.+ ..- ..+|..++.++-
T Consensus 13 k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g-~~~~~~~~~~~~~g~~~~~~~~ 64 (229)
T PRK13226 13 RAVLFDLDGTLLDSAPDMLATVNAMLAARG-RAPITLAQLRPVVSKGARAMLA 64 (229)
T ss_pred CEEEEcCcCccccCHHHHHHHHHHHHHHCC-CCCCCHHHHHHHhhhHHHHHHH
Confidence 4689999999986554444333 34443 2211 111 125666666554
No 37
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=41.63 E-value=13 Score=32.09 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.6
Q ss_pred EEEEeeCcchhhhhhh
Q 028036 7 KVFIWDMDETLILLKS 22 (215)
Q Consensus 7 rVFIWDLDETiIif~S 22 (215)
+..|||||.|||=+++
T Consensus 5 k~vIFDlDGTLiDs~~ 20 (267)
T PRK13478 5 QAVIFDWAGTTVDFGS 20 (267)
T ss_pred EEEEEcCCCCeecCCC
Confidence 5789999999998754
No 38
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=41.39 E-value=13 Score=31.82 Aligned_cols=51 Identities=20% Similarity=0.115 Sum_probs=26.9
Q ss_pred EEEEeeCcchhhhhhhhcch---hhhhhcCCCCChHHHHH-HHHHHHHHHHHHhh
Q 028036 7 KVFIWDMDETLILLKSLLNG---TFAQSFNDLKDADKGVQ-IGRMWENHILNVCD 57 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtG---syA~~~~~~KD~~~~v~-LG~r~EelIf~l~D 57 (215)
+.+|||||.|||=.-.+-.- ..+..||-.-+.+...+ .|...-+.|-.++.
T Consensus 3 ~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 57 (221)
T COG0637 3 KAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRK 57 (221)
T ss_pred cEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHH
Confidence 57899999999866444433 34445652222222222 35444444444444
No 39
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=41.17 E-value=13 Score=33.12 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=19.2
Q ss_pred eEEEEeeCcchhhhhh-hhcchhhhhhc
Q 028036 6 TKVFIWDMDETLILLK-SLLNGTFAQSF 32 (215)
Q Consensus 6 ~rVFIWDLDETiIif~-SLLtGsyA~~~ 32 (215)
-+..|||||.||+=.. .+..-.+.+.+
T Consensus 40 ~k~VIFDlDGTLvDS~~~~~~~a~~~~l 67 (286)
T PLN02779 40 PEALLFDCDGVLVETERDGHRVAFNDAF 67 (286)
T ss_pred CcEEEEeCceeEEccccHHHHHHHHHHH
Confidence 4678999999998776 66555444433
No 40
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=39.89 E-value=34 Score=27.93 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=16.8
Q ss_pred EEEEeeCcchhhhhhhhcch---hhhhhcC
Q 028036 7 KVFIWDMDETLILLKSLLNG---TFAQSFN 33 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtG---syA~~~~ 33 (215)
++.|||+|.||+=....... .+++.|+
T Consensus 7 ~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~ 36 (226)
T PRK13222 7 RAVAFDLDGTLVDSAPDLAAAVNAALAALG 36 (226)
T ss_pred cEEEEcCCcccccCHHHHHHHHHHHHHHCC
Confidence 36799999999933322222 4455554
No 41
>PRK11587 putative phosphatase; Provisional
Probab=39.49 E-value=14 Score=30.74 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=16.8
Q ss_pred EEEEeeCcchhhhhhhhcchhhhh
Q 028036 7 KVFIWDMDETLILLKSLLNGTFAQ 30 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~ 30 (215)
+..|||||.|||=......-.+.+
T Consensus 4 k~viFDlDGTL~Ds~~~~~~a~~~ 27 (218)
T PRK11587 4 KGFLFDLDGTLVDSLPAVERAWSN 27 (218)
T ss_pred CEEEEcCCCCcCcCHHHHHHHHHH
Confidence 457999999998766555444433
No 42
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=39.17 E-value=16 Score=32.32 Aligned_cols=49 Identities=12% Similarity=-0.008 Sum_probs=25.6
Q ss_pred EEEEeeCcchhhhhh-hhcc---hhhhhhcCCCCChHHH--HHHHHHHHHHHHHH
Q 028036 7 KVFIWDMDETLILLK-SLLN---GTFAQSFNDLKDADKG--VQIGRMWENHILNV 55 (215)
Q Consensus 7 rVFIWDLDETiIif~-SLLt---GsyA~~~~~~KD~~~~--v~LG~r~EelIf~l 55 (215)
+.+|||||.|||=-. .+.. -..++.||....+..- ...|+.+.+++..+
T Consensus 25 k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l 79 (260)
T PLN03243 25 LGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEV 79 (260)
T ss_pred eEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHH
Confidence 468999999999653 2222 2344555522222222 23466555554443
No 43
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=39.00 E-value=16 Score=31.38 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=17.6
Q ss_pred EEEEeeCcchhhhhhhhcchhhhh
Q 028036 7 KVFIWDMDETLILLKSLLNGTFAQ 30 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~ 30 (215)
+.+|||||.|||=......-.+.+
T Consensus 23 k~viFDlDGTLiDs~~~~~~a~~~ 46 (248)
T PLN02770 23 EAVLFDVDGTLCDSDPLHYYAFRE 46 (248)
T ss_pred CEEEEcCCCccCcCHHHHHHHHHH
Confidence 568999999999877655444443
No 44
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=38.72 E-value=18 Score=29.39 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=11.3
Q ss_pred EEEEeeCcchhh
Q 028036 7 KVFIWDMDETLI 18 (215)
Q Consensus 7 rVFIWDLDETiI 18 (215)
+++|.|||-||+
T Consensus 2 ~~v~FD~DGTL~ 13 (205)
T PRK13582 2 EIVCLDLEGVLV 13 (205)
T ss_pred eEEEEeCCCCCh
Confidence 689999999999
No 45
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=38.41 E-value=13 Score=30.23 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=9.5
Q ss_pred EEeeCcchhhh
Q 028036 9 FIWDMDETLIL 19 (215)
Q Consensus 9 FIWDLDETiIi 19 (215)
.|||||.|||=
T Consensus 1 viFD~DGTL~D 11 (213)
T TIGR01449 1 VLFDLDGTLVD 11 (213)
T ss_pred CeecCCCcccc
Confidence 38999999994
No 46
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.90 E-value=37 Score=24.98 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=24.8
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhhhc
Q 028036 36 KDADKGVQIGRMWENHILNVCDECFF 61 (215)
Q Consensus 36 KD~~~~v~LG~r~EelIf~l~D~hfF 61 (215)
++|-++.++.+++.+---+|||.|+.
T Consensus 33 ~NPlkAqR~AE~~n~~~~~l~~~~~~ 58 (60)
T PF07026_consen 33 TNPLKAQRLAEELNSKQVNLCDEHLL 58 (60)
T ss_pred cCHHHHHHHHHHHHhhHhhhhhhhcc
Confidence 89999999999999999999999985
No 47
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=37.78 E-value=17 Score=31.97 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=19.1
Q ss_pred CceEEEEeeCcchhhhhhhhcchhhh
Q 028036 4 TLTKVFIWDMDETLILLKSLLNGTFA 29 (215)
Q Consensus 4 ~l~rVFIWDLDETiIif~SLLtGsyA 29 (215)
.+-.+.|||||.||+=........+.
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~~~~a~~ 36 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPDLAAAVD 36 (272)
T ss_pred ccCCEEEEcCCCccccCHHHHHHHHH
Confidence 35668999999999876655555444
No 48
>PRK09449 dUMP phosphatase; Provisional
Probab=37.52 E-value=17 Score=29.97 Aligned_cols=12 Identities=42% Similarity=0.697 Sum_probs=10.8
Q ss_pred EEEEeeCcchhh
Q 028036 7 KVFIWDMDETLI 18 (215)
Q Consensus 7 rVFIWDLDETiI 18 (215)
+..|||||.|||
T Consensus 4 k~iiFDlDGTLi 15 (224)
T PRK09449 4 DWILFDADETLF 15 (224)
T ss_pred cEEEEcCCCchh
Confidence 468999999999
No 49
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=37.37 E-value=15 Score=32.71 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=17.3
Q ss_pred eEEEEeeCcchhhhhhhhcch---hhhhhcC
Q 028036 6 TKVFIWDMDETLILLKSLLNG---TFAQSFN 33 (215)
Q Consensus 6 ~rVFIWDLDETiIif~SLLtG---syA~~~~ 33 (215)
-+.+|||||.|||=-.-...- ..++.|+
T Consensus 62 ~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G 92 (273)
T PRK13225 62 LQAIIFDFDGTLVDSLPTVVAIANAHAPDFG 92 (273)
T ss_pred cCEEEECCcCccccCHHHHHHHHHHHHHHCC
Confidence 356899999999854323222 3445554
No 50
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.49 E-value=1e+02 Score=27.95 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=63.3
Q ss_pred chhhhhhcCCCCChHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCcccccccccCCCC-CCCCCCCCCCCCCCCCCC-ch
Q 028036 25 NGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDG-RDLSDYEFDRDGLCPPFD-DL 102 (215)
Q Consensus 25 tGsyA~~~~~~KD~~~~v~LG~r~EelIf~l~D~hfFf~dlE~cd~~hiddvs~~DnG-~DLS~y~F~~dgf~~~~~-~~ 102 (215)
+|.||.+-+ .+...|-.-|..--.-|.+.|- +-| +-||-|-|+++.|.-|.. ..
T Consensus 20 NrRwAk~~g--l~~~~GH~~G~~~l~~i~~~c~----------------------~~GI~~lTvYaFS~EN~~R~~~EV~ 75 (239)
T PRK14839 20 NGRWATARG--LPRLAGHRAGVEAIRRVVEAAP----------------------DLGIGTLTLYAFSSDNWRRPAAEVG 75 (239)
T ss_pred CHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHH----------------------HcCCCEEEEEEechhhcCCCHHHHH
Confidence 689999975 8999999999876666666665 224 568899999999986553 33
Q ss_pred hhHHHHHHH--HHHHHHHhcCcc-------ccCChhHHHHHHHHHhhhhhhhh
Q 028036 103 SLKKIAYRH--RAIAHKYKEGLQ-------NIFDKEMLRVWDELYDMTDEYTD 146 (215)
Q Consensus 103 n~RKLA~ry--R~I~e~Y~~~l~-------~LL~~~~~~~w~~l~~~~d~~Td 146 (215)
.+-+|.-++ +.+.+..++|+. .+|.+.-++....+-..|...++
T Consensus 76 ~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~ 128 (239)
T PRK14839 76 GLMRLLRAYLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDR 128 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCc
Confidence 333443322 234444455543 45666666666666666655443
No 51
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=36.42 E-value=20 Score=30.62 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=19.0
Q ss_pred EEEEeeCcchhhhhhhhcchhhhh
Q 028036 7 KVFIWDMDETLILLKSLLNGTFAQ 30 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~ 30 (215)
++.|+|||.||+=..+.....+.+
T Consensus 11 k~iiFDlDGTL~D~~~~~~~a~~~ 34 (238)
T PRK10748 11 SALTFDLDDTLYDNRPVILRTEQE 34 (238)
T ss_pred eeEEEcCcccccCChHHHHHHHHH
Confidence 578999999999888777654444
No 52
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=36.35 E-value=18 Score=29.82 Aligned_cols=17 Identities=41% Similarity=0.735 Sum_probs=14.4
Q ss_pred EEEEeeCcchhhhhhhh
Q 028036 7 KVFIWDMDETLILLKSL 23 (215)
Q Consensus 7 rVFIWDLDETiIif~SL 23 (215)
+++|+|||.||+-..+.
T Consensus 15 k~iiFD~DGTL~~~~~~ 31 (219)
T TIGR00338 15 KLVVFDMDSTLINAETI 31 (219)
T ss_pred CEEEEeCcccCCCchHH
Confidence 58999999999987654
No 53
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=35.99 E-value=17 Score=29.53 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=16.6
Q ss_pred EEEEeeCcchhhhhhhhcchhhhh
Q 028036 7 KVFIWDMDETLILLKSLLNGTFAQ 30 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~ 30 (215)
++.|||||.|||=+.......+.+
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~ 24 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCE 24 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHH
Confidence 468999999999765544444433
No 54
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=35.94 E-value=19 Score=28.34 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=18.5
Q ss_pred EEEEeeCcchhhhhhhhcchhhhhhcC
Q 028036 7 KVFIWDMDETLILLKSLLNGTFAQSFN 33 (215)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~~~~ 33 (215)
-++|+|+|.|||=+.+.. ..++.|+
T Consensus 2 ~~iiFD~dgTL~~~~~~~--~~~~~~~ 26 (188)
T TIGR01489 2 VVVVSDFDGTITLNDSDD--WITDKFG 26 (188)
T ss_pred eEEEEeCCCcccCCCchH--HHHHhcC
Confidence 378999999999888754 3455553
No 55
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=35.67 E-value=14 Score=28.96 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=13.4
Q ss_pred EEeeCcchhhhhhhhc
Q 028036 9 FIWDMDETLILLKSLL 24 (215)
Q Consensus 9 FIWDLDETiIif~SLL 24 (215)
.|||||.|||=..+..
T Consensus 2 vlFDlDgtLv~~~~~~ 17 (183)
T TIGR01509 2 ILFDLDGVLVDTSSAI 17 (183)
T ss_pred eeeccCCceechHHHH
Confidence 6899999999887654
No 56
>PLN02940 riboflavin kinase
Probab=35.57 E-value=43 Score=31.33 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=20.3
Q ss_pred CceEEEEeeCcchhhhhhhhcchhhh---hhcC
Q 028036 4 TLTKVFIWDMDETLILLKSLLNGTFA---QSFN 33 (215)
Q Consensus 4 ~l~rVFIWDLDETiIif~SLLtGsyA---~~~~ 33 (215)
.+-+..|||||.||+=......-.+. +.|+
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G 41 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYG 41 (382)
T ss_pred ccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcC
Confidence 34567899999999966655544443 4554
No 57
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=35.21 E-value=17 Score=28.72 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=13.0
Q ss_pred EEeeCcchhhhhhhhcc
Q 028036 9 FIWDMDETLILLKSLLN 25 (215)
Q Consensus 9 FIWDLDETiIif~SLLt 25 (215)
.|||+|.||+=......
T Consensus 2 iiFD~DGTL~ds~~~~~ 18 (185)
T TIGR01990 2 VIFDLDGVITDTAEYHY 18 (185)
T ss_pred eEEcCCCccccChHHHH
Confidence 69999999986555443
No 58
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=33.80 E-value=17 Score=29.74 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=10.3
Q ss_pred EEEeeCcchhhhh
Q 028036 8 VFIWDMDETLILL 20 (215)
Q Consensus 8 VFIWDLDETiIif 20 (215)
.-|-|||||||=-
T Consensus 3 ~lvlDLDeTLi~~ 15 (162)
T TIGR02251 3 TLVLDLDETLVHS 15 (162)
T ss_pred EEEEcCCCCcCCC
Confidence 4578999999954
No 59
>PF08812 YtxC: YtxC-like family; InterPro: IPR014199 This uncharacterised protein is one of a number of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and it is not found in non-endospore forming species. It is uniformly distributed in the mother cell cytoplasm in Bacillus subtilis [].
Probab=33.01 E-value=3.4e+02 Score=23.83 Aligned_cols=123 Identities=17% Similarity=0.213 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhhhhchhhhhcCCcccccccccCCCCC-CCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHhc--
Q 028036 44 IGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGR-DLSDYEFDRDGLCPPFDDLSLKKIAYRHRAIAHKYKE-- 120 (215)
Q Consensus 44 LG~r~EelIf~l~D~hfFf~dlE~cd~~hiddvs~~DnG~-DLS~y~F~~dgf~~~~~~~n~RKLA~ryR~I~e~Y~~-- 120 (215)
+....+++|..+..+.|||-+-||..+..=-..+--+++. +++. .....+++-+.-+++|.+--..
T Consensus 14 i~~~e~~~i~~ii~~~Y~~~~~eE~~~I~~~~~~iL~~~~~~~~~-----------~~~~~~~rk~~I~~~i~~~l~~~~ 82 (221)
T PF08812_consen 14 IEEKEKKLIRKIIEENYFYFDEEEQQQILEIAHEILNGERKDLPE-----------DSIYRINRKNEIIEKILEYLEENS 82 (221)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCccccch-----------hcchhhhHHHHHHHHHHHHHhcCC
Confidence 4556778899999998888888887765433322222221 1110 0001222334445555554332
Q ss_pred --CccccCChhHHHHHHHHHhhhhhhhhHHHHHH-----HHHHHHhhcCCcccccccccCcccCCCCCcceeEEEecCC
Q 028036 121 --GLQNIFDKEMLRVWDELYDMTDEYTDRWLSSA-----RVLLEQCSSGKEVSTSSLGLASLDSADTKSEHVNILVTSG 192 (215)
Q Consensus 121 --~l~~LL~~~~~~~w~~l~~~~d~~Td~WLs~A-----~k~L~~i~~~~~~~t~~~~~~~~~~~~sr~~~vNVLVTs~ 192 (215)
++.|.+-=..++-|.+|..-+|.--|-++--= .++|.-+.. .+.+|-..|||+++.+
T Consensus 83 ~i~idGFi~FRLk~y~~~l~~~ve~aVdEy~~EkEY~eFI~lLryFV~---------------~Qe~ki~~vhvv~~~~ 146 (221)
T PF08812_consen 83 EINIDGFITFRLKDYREELEEIVEKAVDEYLMEKEYQEFIQLLRYFVD---------------IQEPKIELVHVVIDED 146 (221)
T ss_pred EEeehhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCcCceEEEEEEeCC
Confidence 88999998899999999999999999988654 444554442 2347889999999954
No 60
>TIGR02834 spo_ytxC putative sporulation protein YtxC. This uncharacterized protein is part of a panel of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and nowhere else.
Probab=32.99 E-value=3.3e+02 Score=24.95 Aligned_cols=124 Identities=19% Similarity=0.244 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhhhhhchhhhhcCCcccccccccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHhc---
Q 028036 44 IGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRDGLCPPFDDLSLKKIAYRHRAIAHKYKE--- 120 (215)
Q Consensus 44 LG~r~EelIf~l~D~hfFf~dlE~cd~~hiddvs~~DnG~DLS~y~F~~dgf~~~~~~~n~RKLA~ryR~I~e~Y~~--- 120 (215)
+...=+++|..+..+.|||.+-||+.|+.=-..+--++..+-. |.....+.+=+.-+.+|.+--+.
T Consensus 72 i~~~e~~~i~~ii~~~Y~f~~~eE~~~I~~~a~~iL~~e~~~~-----------~~~~~~~~rk~~I~~~i~~~l~e~~~ 140 (276)
T TIGR02834 72 VEHKEDELILKIIEESYYFTDQEEIEQILAIANSILTGERKDD-----------PSEIYKMNRKNEILDEINEFLEENDE 140 (276)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHcCCccCC-----------ccchhhhhHHHHHHHHHHHHhccCCE
Confidence 4445567888888998888899999886543333223221101 11111333334445555554432
Q ss_pred -CccccCChhHHHHHHHHHhhhhhhhhHHHHHH-----HHHHHHhhcCCcccccccccCcccCCCCCcceeEEEecCCc
Q 028036 121 -GLQNIFDKEMLRVWDELYDMTDEYTDRWLSSA-----RVLLEQCSSGKEVSTSSLGLASLDSADTKSEHVNILVTSGS 193 (215)
Q Consensus 121 -~l~~LL~~~~~~~w~~l~~~~d~~Td~WLs~A-----~k~L~~i~~~~~~~t~~~~~~~~~~~~sr~~~vNVLVTs~q 193 (215)
++.|.+.=..++-+.+|+.-+|.--|-.+--- -++|.-... .+.+|-.+|||+++.|.
T Consensus 141 i~idgFitFRLk~y~~~L~~~Ve~aidEy~~EkEYqeFI~lLryFV~---------------~Qe~ki~~Vhvv~~~~~ 204 (276)
T TIGR02834 141 INIEGFVTFRLKPYVEELRDIVEKAIDEYLMEKEYQEFIKLLRYFVE---------------IQDSRLEIVHIVVDGGS 204 (276)
T ss_pred EeeccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------ccCcCccEEEEEEECCe
Confidence 88899998899999999998888888776543 445554442 23478899999997543
No 61
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=32.81 E-value=21 Score=28.16 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=17.8
Q ss_pred EEEeeCcchhhhhhhhcchhhhhh
Q 028036 8 VFIWDMDETLILLKSLLNGTFAQS 31 (215)
Q Consensus 8 VFIWDLDETiIif~SLLtGsyA~~ 31 (215)
+.|||||.|||=+.......+.+.
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~ 24 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAI 24 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHh
Confidence 369999999998887665554443
No 62
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=32.75 E-value=17 Score=29.48 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.5
Q ss_pred EEeeCcchhhhhhhhc
Q 028036 9 FIWDMDETLILLKSLL 24 (215)
Q Consensus 9 FIWDLDETiIif~SLL 24 (215)
.++|+|+|||=.+|+.
T Consensus 2 a~FD~DgTL~~~~s~~ 17 (202)
T TIGR01490 2 AFFDFDGTLTAKDTLF 17 (202)
T ss_pred eEEccCCCCCCCchHH
Confidence 5899999999988744
No 63
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=31.89 E-value=19 Score=28.28 Aligned_cols=15 Identities=47% Similarity=0.541 Sum_probs=13.0
Q ss_pred EEeeCcchhhhhhhh
Q 028036 9 FIWDMDETLILLKSL 23 (215)
Q Consensus 9 FIWDLDETiIif~SL 23 (215)
+|+|||.||+--.|+
T Consensus 2 ~~fD~DgTl~~~~s~ 16 (177)
T TIGR01488 2 AIFDFDGTLTRQDSL 16 (177)
T ss_pred EEecCccccccchhh
Confidence 789999999987774
No 64
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.46 E-value=1.5e+02 Score=26.62 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=61.1
Q ss_pred chhhhhhcCCCCChHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCcccccccccCCCC-CCCCCCCCCCCCCCCCCC-ch
Q 028036 25 NGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDG-RDLSDYEFDRDGLCPPFD-DL 102 (215)
Q Consensus 25 tGsyA~~~~~~KD~~~~v~LG~r~EelIf~l~D~hfFf~dlE~cd~~hiddvs~~DnG-~DLS~y~F~~dgf~~~~~-~~ 102 (215)
+|.||++-+ ++...|-+-|-.--+-|.+.|- +-| +-||-|-|+++.|.-|.. ..
T Consensus 17 NrRwAk~~g--l~~~~GH~~G~~~~~~i~~~c~----------------------~~GI~~lT~YaFS~EN~~Rp~~EV~ 72 (230)
T PRK14837 17 NRRWALKKG--LSFFEGHKEGLKRAKEIVKHSL----------------------KLGIKYLSLYVFSTENWNRTDSEIE 72 (230)
T ss_pred CHHHHHHCC--CchhhhHHHHHHHHHHHHHHHH----------------------HcCCCEEEEEEeehhhcCCCHHHHH
Confidence 679999975 8888898888876666777776 235 568889999999987664 23
Q ss_pred hhHHHHHH-HHH-HHHHHhcCc-------cccCChhHHHHHHHHHhhhhhhh
Q 028036 103 SLKKIAYR-HRA-IAHKYKEGL-------QNIFDKEMLRVWDELYDMTDEYT 145 (215)
Q Consensus 103 n~RKLA~r-yR~-I~e~Y~~~l-------~~LL~~~~~~~w~~l~~~~d~~T 145 (215)
.+=+|..+ .+. +.+.-++|+ -.+|.+.-++.-..+-+.|...|
T Consensus 73 ~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~ 124 (230)
T PRK14837 73 HLMFLIADYLSSEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFD 124 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 32233322 222 233335544 35566666666656555555443
No 65
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=30.58 E-value=35 Score=26.27 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=20.9
Q ss_pred CceEEEEeeCcchhhhhhhhcchhhhh
Q 028036 4 TLTKVFIWDMDETLILLKSLLNGTFAQ 30 (215)
Q Consensus 4 ~l~rVFIWDLDETiIif~SLLtGsyA~ 30 (215)
+=+|||.|++||-++++-++.-|-..+
T Consensus 11 ~~~~i~g~t~DE~i~~~~~~~~Gi~~~ 37 (95)
T TIGR02762 11 EQPRILGLPLDEFLPGATLFGIGILSG 37 (95)
T ss_pred CCCeEEEeeHHHHHHHHHHHHHHHHHh
Confidence 347899999999988887777665554
No 66
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=30.46 E-value=25 Score=29.49 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.9
Q ss_pred eEEEEeeCcchhhhhhhhc
Q 028036 6 TKVFIWDMDETLILLKSLL 24 (215)
Q Consensus 6 ~rVFIWDLDETiIif~SLL 24 (215)
..++|+|+|-||+-..++.
T Consensus 3 ~~~vifDfDgTi~~~d~~~ 21 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNII 21 (219)
T ss_pred CcEEEEcCCCCCCcchhhH
Confidence 4589999999999877765
No 67
>PF04068 RLI: Possible Fer4-like domain in RNase L inhibitor, RLI; InterPro: IPR007209 This is a possible metal-binding domain in endoribonuclease RNase L inhibitor. It is found at the N-terminal end of RNase L inhibitor proteins, adjacent to the 4Fe-4S binding domain, fer4, IPR001450 from INTERPRO. Also often found adjacent to IPR007177 from INTERPRO in uncharacterised proteins. The RNase L system plays a major role in the anti-viral and anti-proliferative activities of interferons [], and could possibly play a more general role in the regulation of RNA stability in mammalian cells. Inhibitory activity requires concentration-dependent association of RLI with RNase L [].; PDB: 3J16_B 3BK7_A.
Probab=30.07 E-value=34 Score=22.15 Aligned_cols=9 Identities=33% Similarity=1.191 Sum_probs=6.4
Q ss_pred EEEEeeCcc
Q 028036 7 KVFIWDMDE 15 (215)
Q Consensus 7 rVFIWDLDE 15 (215)
||+|||.|+
T Consensus 2 rlav~d~~~ 10 (35)
T PF04068_consen 2 RLAVWDFDQ 10 (35)
T ss_dssp EEEEE-CCC
T ss_pred EEEEEEcCC
Confidence 788888875
No 68
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=28.13 E-value=33 Score=28.46 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=17.4
Q ss_pred eEEEEeeCcchhhhhhhhcchhh
Q 028036 6 TKVFIWDMDETLILLKSLLNGTF 28 (215)
Q Consensus 6 ~rVFIWDLDETiIif~SLLtGsy 28 (215)
-+..|||+|.||+=++......+
T Consensus 7 ~k~iiFD~DGTL~d~~~~~~~a~ 29 (222)
T PRK10826 7 ILAAIFDMDGLLIDSEPLWDRAE 29 (222)
T ss_pred CcEEEEcCCCCCCcCHHHHHHHH
Confidence 35679999999997776665544
No 69
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.04 E-value=2e+02 Score=31.28 Aligned_cols=91 Identities=24% Similarity=0.415 Sum_probs=53.8
Q ss_pred HHHHHHHHHHH-----Hhhhhhchhhhhc-CCcccccccccCC-------------CCCCCCCCC--CCCC---------
Q 028036 44 IGRMWENHILN-----VCDECFFYEQIEN-NNTPFLDALKQYD-------------DGRDLSDYE--FDRD--------- 93 (215)
Q Consensus 44 LG~r~EelIf~-----l~D~hfFf~dlE~-cd~~hiddvs~~D-------------nG~DLS~y~--F~~d--------- 93 (215)
||+++-+.|++ +.=.-||-.++-+ .+-|.++|+.|.| +|.|+++.+ |.-+
T Consensus 738 LGrllGK~iYE~iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nLifLk~y~gddi~eL~L~FtVv~~e~G~~~v 817 (1001)
T KOG0942|consen 738 LGRLLGKCIYEGILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNLIFLKNYNGDDISELQLDFTVVNSELGERQV 817 (1001)
T ss_pred HHHHHHHHHHhcceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHHHHHHhcCCCchhhccceEEEecccccccee
Confidence 55555555543 3323367666655 4448899998888 677777544 4321
Q ss_pred ------CCCCCCCchhh---------HHHHHHHHHHHHHHhcCccccCChhHHHHHHHHH
Q 028036 94 ------GLCPPFDDLSL---------KKIAYRHRAIAHKYKEGLQNIFDKEMLRVWDELY 138 (215)
Q Consensus 94 ------gf~~~~~~~n~---------RKLA~ryR~I~e~Y~~~l~~LL~~~~~~~w~~l~ 138 (215)
|-.-|.+.+|- =||-.|-|+--..+++|+..++++ +|...-
T Consensus 818 VeLkPnGs~i~VTneNvi~YihLVsnY~LN~rir~~c~AFr~Gls~II~~----eWl~MF 873 (1001)
T KOG0942|consen 818 VELKPNGSKIRVTNENVIEYIHLVSNYKLNQRIRRQCSAFRKGLSQIISP----EWLRMF 873 (1001)
T ss_pred EEeccCCccceeechhhhhhhHHhhhhHHHHHHHHHHHHHhcchhhcCCH----HHHHhh
Confidence 11122233441 355555555556778999999999 565433
No 70
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=27.92 E-value=76 Score=29.80 Aligned_cols=29 Identities=21% Similarity=0.131 Sum_probs=20.0
Q ss_pred hHHH-HHHHHHHHHHHhcCccccCChhHHHHHHHHHhhhhhhhhH
Q 028036 104 LKKI-AYRHRAIAHKYKEGLQNIFDKEMLRVWDELYDMTDEYTDR 147 (215)
Q Consensus 104 ~RKL-A~ryR~I~e~Y~~~l~~LL~~~~~~~w~~l~~~~d~~Td~ 147 (215)
.||+ |-|||. -||.+|+.|..+++.++++
T Consensus 234 qnk~AAtRYRq---------------KkRae~E~l~ge~~~Le~r 263 (294)
T KOG4571|consen 234 QNKAAATRYRQ---------------KKRAEKEALLGELEGLEKR 263 (294)
T ss_pred HhHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Confidence 4777 889985 3666777777777666553
No 71
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=27.76 E-value=98 Score=29.82 Aligned_cols=63 Identities=16% Similarity=0.335 Sum_probs=42.4
Q ss_pred CCceEEEEeeCcchhhhhhhhcchhhhhhcC------------CCCChHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCc
Q 028036 3 ATLTKVFIWDMDETLILLKSLLNGTFAQSFN------------DLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNT 70 (215)
Q Consensus 3 ~~l~rVFIWDLDETiIif~SLLtGsyA~~~~------------~~KD~~~~v~LG~r~EelIf~l~D~hfFf~dlE~cd~ 70 (215)
..+.|....|||...| +.+++|.|.+.|. .+.--..|-..|.+..+-|++..+ .++|+||.
T Consensus 57 ~~~pRav~iD~Ep~vi--~~i~~~~~~~lf~~~~~~~~~~~~gagnnwa~Gy~~g~~~~d~i~d~ir-----~~~E~cd~ 129 (431)
T cd02188 57 HYVPRAILIDLEPRVI--NSIQNSEYRNLYNPENIFLSKHGGGAGNNWASGYSQGEEVQEEILDIID-----READGSDS 129 (431)
T ss_pred ccCCcceeccCCcchh--hhhhcCccccccCccceEeeccCCCccccHHHHHHHHHHHHHHHHHHHH-----HHHhcCCC
Confidence 3457888889999986 5777777655443 112333566678888888888777 46788885
Q ss_pred cc
Q 028036 71 PF 72 (215)
Q Consensus 71 ~h 72 (215)
..
T Consensus 130 l~ 131 (431)
T cd02188 130 LE 131 (431)
T ss_pred cc
Confidence 43
No 72
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=26.74 E-value=25 Score=25.15 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=14.4
Q ss_pred EEEeeCcchhhhhhhhcc
Q 028036 8 VFIWDMDETLILLKSLLN 25 (215)
Q Consensus 8 VFIWDLDETiIif~SLLt 25 (215)
++|.|+|+||+--++...
T Consensus 1 ~~vfD~D~tl~~~~~~~~ 18 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIA 18 (139)
T ss_pred CeEEccCCceEccCcccc
Confidence 478999999988876543
No 73
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=26.67 E-value=32 Score=31.72 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=13.1
Q ss_pred eEEEEeeCcchhhhhh
Q 028036 6 TKVFIWDMDETLILLK 21 (215)
Q Consensus 6 ~rVFIWDLDETiIif~ 21 (215)
.|++|+|||-|+|.-.
T Consensus 110 ~~LvvfDmDGTLI~~e 125 (322)
T PRK11133 110 PGLLVMDMDSTAIQIE 125 (322)
T ss_pred CCEEEEECCCCCcchH
Confidence 4789999999999443
No 74
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=25.11 E-value=38 Score=27.75 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=12.4
Q ss_pred EEEEeeCcchhhhhh
Q 028036 7 KVFIWDMDETLILLK 21 (215)
Q Consensus 7 rVFIWDLDETiIif~ 21 (215)
++.|+|||.||+=..
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 478999999999654
No 75
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=25.01 E-value=35 Score=29.13 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=16.6
Q ss_pred ceEEEEeeCcchhhhhhhhc
Q 028036 5 LTKVFIWDMDETLILLKSLL 24 (215)
Q Consensus 5 l~rVFIWDLDETiIif~SLL 24 (215)
-+++-++|+|+||+-..|+.
T Consensus 4 ~~~la~FDfDgTLt~~ds~~ 23 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQDMFG 23 (210)
T ss_pred cCcEEEEcCCCCCccCccHH
Confidence 46899999999999776654
No 76
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=25.01 E-value=37 Score=30.09 Aligned_cols=13 Identities=23% Similarity=0.606 Sum_probs=10.5
Q ss_pred EEEEeeCcchhhh
Q 028036 7 KVFIWDMDETLIL 19 (215)
Q Consensus 7 rVFIWDLDETiIi 19 (215)
-..|.|||||++=
T Consensus 64 ~aViFDlDgTLlD 76 (237)
T TIGR01672 64 IAVSFDIDDTVLF 76 (237)
T ss_pred eEEEEeCCCcccc
Confidence 3789999999754
No 77
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=23.04 E-value=78 Score=32.24 Aligned_cols=45 Identities=27% Similarity=0.429 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHhhcCCcccccccccCcccCCCCCcceeEEEec------CCcchHHHHHHHH
Q 028036 145 TDRWLSSARVLLEQCSSGKEVSTSSLGLASLDSADTKSEHVNILVT------SGSLIPSLVKCLL 203 (215)
Q Consensus 145 Td~WLs~A~k~L~~i~~~~~~~t~~~~~~~~~~~~sr~~~vNVLVT------s~qLVPaLaK~LL 203 (215)
+-+||...+.||+-...-. .+ -.++.++|||= .|..|.|||++||
T Consensus 319 ~SgWL~~i~~~L~~a~~ia------------~~--l~~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 319 SSGWLKHIRAILKAAAEIA------------KC--LSSEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred hccHHHHHHHHHHHHHHHH------------HH--HHhCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 3488888888877443210 01 13355899984 5689999999997
No 78
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=22.41 E-value=1.1e+02 Score=17.05 Aligned_cols=27 Identities=7% Similarity=0.294 Sum_probs=17.9
Q ss_pred hhhhhcchhhhhhcCCCCChHHHHHHHHHHHH
Q 028036 19 LLKSLLNGTFAQSFNDLKDADKGVQIGRMWEN 50 (215)
Q Consensus 19 if~SLLtGsyA~~~~~~KD~~~~v~LG~r~Ee 50 (215)
.|+++++| |++. +++.++.++=.+|.+
T Consensus 2 ~~n~li~~-~~~~----~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDG-LCKA----GRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHH-HHHC----CCHHHHHHHHHHHHH
Confidence 46677754 5554 788888887666543
No 79
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=21.80 E-value=47 Score=31.17 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=15.5
Q ss_pred CceEEEEeeCcchhhhhhh
Q 028036 4 TLTKVFIWDMDETLILLKS 22 (215)
Q Consensus 4 ~l~rVFIWDLDETiIif~S 22 (215)
++.+|.+.|||.|||--+.
T Consensus 126 ~~~~~i~~D~D~TL~~~~~ 144 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEE 144 (303)
T ss_pred eeccEEEEecCCCccCCCC
Confidence 4568999999999987654
No 80
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=21.49 E-value=52 Score=30.85 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.4
Q ss_pred CceEEEEeeCcchhhhhhh
Q 028036 4 TLTKVFIWDMDETLILLKS 22 (215)
Q Consensus 4 ~l~rVFIWDLDETiIif~S 22 (215)
+...|.+.|||.|||--..
T Consensus 124 ~~~kvIvFDLDgTLi~~~~ 142 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEE 142 (301)
T ss_pred ccceEEEEecCCCCcCCCC
Confidence 4567999999999987654
No 81
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.36 E-value=2.8e+02 Score=24.98 Aligned_cols=95 Identities=18% Similarity=0.273 Sum_probs=60.5
Q ss_pred chhhhhhcCCCCChHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCcccccccccCCCC-CCCCCCCCCCCCCCCCCC-ch
Q 028036 25 NGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDG-RDLSDYEFDRDGLCPPFD-DL 102 (215)
Q Consensus 25 tGsyA~~~~~~KD~~~~v~LG~r~EelIf~l~D~hfFf~dlE~cd~~hiddvs~~DnG-~DLS~y~F~~dgf~~~~~-~~ 102 (215)
+|.||.+-+ .+...|-+-|..--.-|.+.|- +-| +-||-|-|+++.|.-|.. ..
T Consensus 19 NrRwAk~~g--l~~~~GH~~G~~~l~~i~~~c~----------------------~lgI~~vTvYaFS~eN~~R~~~EV~ 74 (241)
T PRK14842 19 NGRWAESQG--KKRSEGHREGANAIDRLMDASL----------------------EYGLKNISLYAFSTENWKRPITEIR 74 (241)
T ss_pred CHHHHHHCC--CChhHhHHHHHHHHHHHHHHHH----------------------HcCCCEEEEEEeehhhcCCCHHHHH
Confidence 579999975 8999999999877666777776 335 567889999999986653 33
Q ss_pred hhHHHHHHH-HH-HHHHHhcCcc-------ccCChhHHHHHHHHHhhhhh
Q 028036 103 SLKKIAYRH-RA-IAHKYKEGLQ-------NIFDKEMLRVWDELYDMTDE 143 (215)
Q Consensus 103 n~RKLA~ry-R~-I~e~Y~~~l~-------~LL~~~~~~~w~~l~~~~d~ 143 (215)
.+=+|.-++ ++ +.+..++|+. .+|.+.-++.-..+-+.|..
T Consensus 75 ~Lm~L~~~~l~~~~~~~~~~~irv~~iG~~~~Lp~~l~~~i~~~e~~T~~ 124 (241)
T PRK14842 75 SIFGLLVEFIETRLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKK 124 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcC
Confidence 333443222 22 3344455433 45556666655555555554
No 82
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=21.22 E-value=34 Score=32.37 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=12.8
Q ss_pred EEEEeeCcchhhhhhhh
Q 028036 7 KVFIWDMDETLILLKSL 23 (215)
Q Consensus 7 rVFIWDLDETiIif~SL 23 (215)
+..|||||.|||=.-.+
T Consensus 242 k~vIFDlDGTLiDs~~~ 258 (459)
T PRK06698 242 QALIFDMDGTLFQTDKI 258 (459)
T ss_pred hheeEccCCceecchhH
Confidence 56799999999944333
No 83
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=21.21 E-value=53 Score=27.11 Aligned_cols=13 Identities=31% Similarity=0.348 Sum_probs=11.5
Q ss_pred EEEEeeCcchhhh
Q 028036 7 KVFIWDMDETLIL 19 (215)
Q Consensus 7 rVFIWDLDETiIi 19 (215)
+++++|||.||.=
T Consensus 4 kli~~DlDGTLl~ 16 (230)
T PRK01158 4 KAIAIDIDGTITD 16 (230)
T ss_pred eEEEEecCCCcCC
Confidence 7899999999974
No 84
>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin (see IPR007122 from INTERPRO) and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta. Neither of the subunits shows sequence similarity to other filament-capping proteins []. The beta subunit is a protein of about 280 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0005737 cytoplasm, 0008290 F-actin capping protein complex; PDB: 3AAE_D 3LK4_Q 2KXP_B 2KZ7_B 3AA1_B 3LK2_B 3AA7_B 3AAA_B 1IZN_B 3AA0_B ....
Probab=20.56 E-value=42 Score=30.60 Aligned_cols=21 Identities=29% Similarity=0.862 Sum_probs=15.0
Q ss_pred CCceEEEEeeCcc-----hhhhhhhh
Q 028036 3 ATLTKVFIWDMDE-----TLILLKSL 23 (215)
Q Consensus 3 ~~l~rVFIWDLDE-----TiIif~SL 23 (215)
.++--||.||+|+ .+++++--
T Consensus 115 GGvSSVYlWd~d~~~gFag~vLiKK~ 140 (242)
T PF01115_consen 115 GGVSSVYLWDLDDDDGFAGVVLIKKE 140 (242)
T ss_dssp SSEEEEEEEEETT--EEEEEEEEEEE
T ss_pred CCeeEEEEEecCCCcceeEEEEEEec
Confidence 4677899999999 45555543
No 85
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=20.54 E-value=2.4e+02 Score=28.79 Aligned_cols=82 Identities=24% Similarity=0.243 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCc---------hh--hHHHHHHHHHHHHHH--------hcCccccCChh----------H
Q 028036 80 DDGRDLSDYEFDRDGLCPPFDD---------LS--LKKIAYRHRAIAHKY--------KEGLQNIFDKE----------M 130 (215)
Q Consensus 80 DnG~DLS~y~F~~dgf~~~~~~---------~n--~RKLA~ryR~I~e~Y--------~~~l~~LL~~~----------~ 130 (215)
-||+||+.|.|..||.=+|.+. += +=-.|||..+=.+++ ..|++.|=... +
T Consensus 357 ~dG~dltgy~l~RdGYYG~KGtvl~~~p~~~~yll~~vra~~~s~D~~Lw~~~~~m~~~~gLGdig~~~~~~~~~~~~~~ 436 (557)
T PF06917_consen 357 NDGQDLTGYRLPRDGYYGKKGTVLKPFPADPDYLLPYVRAYRLSRDPELWDLARTMAHHFGLGDIGNAAGKEPRVNMQTD 436 (557)
T ss_dssp TTSEB-TTEE-SS-BTTB-TT-EE--EE--HHHHHHHHHHHHHS--HHHHHHHHHHHHHTT-EE-TTBTTBS-EE-TT--
T ss_pred cCCcCCcCcccccccccCCCCCeeccccCchhHhHHHHHHHHcCCCHHHHHHHHHHHhhcCcccccCccccccccccCCC
Confidence 4799999999999999876542 11 111244433322222 23665443211 2
Q ss_pred HHHHHHHHhhhhhh----hhHHHHHHHHHHHHhhc
Q 028036 131 LRVWDELYDMTDEY----TDRWLSSARVLLEQCSS 161 (215)
Q Consensus 131 ~~~w~~l~~~~d~~----Td~WLs~A~k~L~~i~~ 161 (215)
...=..|.+.||-+ -+.||+.|.+.-+.+..
T Consensus 437 ~~sp~~L~allEL~~atq~~~~l~lA~~~g~~l~~ 471 (557)
T PF06917_consen 437 NASPYLLFALLELYQATQDARYLELADQVGENLFE 471 (557)
T ss_dssp ---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33334455555544 46899999998777654
No 86
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=20.38 E-value=62 Score=28.24 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=13.6
Q ss_pred eEEEEeeCcchhhhhhhhc
Q 028036 6 TKVFIWDMDETLILLKSLL 24 (215)
Q Consensus 6 ~rVFIWDLDETiIif~SLL 24 (215)
..+-|.|+|||++ .++-.
T Consensus 72 ~~avv~DIDeTvL-sn~~y 89 (229)
T PF03767_consen 72 PPAVVFDIDETVL-SNSPY 89 (229)
T ss_dssp EEEEEEESBTTTE-EHHHH
T ss_pred CcEEEEECCcccc-cCHHH
Confidence 5688999999987 55443
Done!