Query 028037
Match_columns 215
No_of_seqs 262 out of 1523
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:16:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.6E-34 3.5E-39 229.7 12.7 114 99-212 8-122 (205)
2 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 8.9E-32 1.9E-36 213.7 12.9 119 93-211 15-135 (221)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 1.9E-30 4E-35 205.8 13.7 114 98-211 3-117 (200)
4 KOG0078 GTP-binding protein SE 100.0 3.9E-30 8.5E-35 206.9 13.4 115 97-211 9-124 (207)
5 KOG0087 GTPase Rab11/YPT3, sma 100.0 8E-30 1.7E-34 204.8 12.4 114 99-212 13-127 (222)
6 KOG0080 GTPase Rab18, small G 100.0 1.1E-29 2.3E-34 196.2 11.7 114 98-211 9-124 (209)
7 KOG0098 GTPase Rab2, small G p 100.0 1.4E-29 3.1E-34 199.8 12.4 114 99-212 5-119 (216)
8 KOG0079 GTP-binding protein H- 100.0 5.7E-30 1.2E-34 195.4 7.9 111 100-211 8-119 (198)
9 KOG0394 Ras-related GTPase [Ge 100.0 1.9E-28 4E-33 193.1 10.6 114 98-211 7-125 (210)
10 KOG0093 GTPase Rab3, small G p 100.0 7.1E-28 1.5E-32 183.7 12.2 117 94-211 16-133 (193)
11 cd04120 Rab12 Rab12 subfamily. 100.0 1.1E-27 2.4E-32 195.9 14.4 112 101-212 1-113 (202)
12 KOG0095 GTPase Rab30, small G 100.0 3.2E-28 6.9E-33 186.2 10.0 112 100-211 7-119 (213)
13 KOG0086 GTPase Rab4, small G p 100.0 2.9E-28 6.3E-33 187.1 9.7 112 100-211 9-121 (214)
14 cd04133 Rop_like Rop subfamily 99.9 8E-27 1.7E-31 186.9 15.3 109 101-211 2-112 (176)
15 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 7E-27 1.5E-31 188.2 14.7 112 99-212 4-117 (182)
16 cd04121 Rab40 Rab40 subfamily. 99.9 7.3E-27 1.6E-31 189.2 14.2 112 100-212 6-118 (189)
17 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.2E-26 2.5E-31 186.7 14.8 112 101-212 1-113 (182)
18 cd04131 Rnd Rnd subfamily. Th 99.9 1.1E-26 2.3E-31 186.3 14.5 111 100-212 1-113 (178)
19 cd01875 RhoG RhoG subfamily. 99.9 1.4E-26 3.1E-31 187.3 14.6 112 99-212 2-115 (191)
20 cd04102 RabL3 RabL3 (Rab-like3 99.9 2.3E-26 4.9E-31 188.2 14.1 112 101-212 1-137 (202)
21 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 5.8E-26 1.3E-30 189.4 14.8 113 98-212 11-125 (232)
22 KOG0088 GTPase Rab21, small G 99.9 1.6E-26 3.4E-31 178.4 8.5 116 97-212 10-126 (218)
23 cd04122 Rab14 Rab14 subfamily. 99.9 1.5E-25 3.3E-30 176.3 14.1 113 100-212 2-115 (166)
24 cd01874 Cdc42 Cdc42 subfamily. 99.9 2.1E-25 4.4E-30 178.1 14.9 110 101-212 2-113 (175)
25 PF00071 Ras: Ras family; Int 99.9 1.2E-25 2.6E-30 175.5 13.2 111 102-212 1-112 (162)
26 cd04117 Rab15 Rab15 subfamily. 99.9 2.7E-25 5.8E-30 174.6 14.5 112 101-212 1-113 (161)
27 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 1.6E-25 3.5E-30 185.7 13.8 111 100-212 1-113 (222)
28 PLN03071 GTP-binding nuclear p 99.9 3.8E-25 8.3E-30 182.9 15.7 114 98-212 11-125 (219)
29 KOG0091 GTPase Rab39, small G 99.9 2.6E-26 5.6E-31 178.0 7.5 112 99-210 7-121 (213)
30 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 4.3E-25 9.3E-30 179.7 14.7 112 101-212 1-118 (201)
31 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 5E-25 1.1E-29 175.0 13.9 111 102-212 2-114 (170)
32 PLN00023 GTP-binding protein; 99.9 5.5E-25 1.2E-29 190.1 15.1 118 95-212 16-159 (334)
33 KOG0393 Ras-related small GTPa 99.9 8.4E-26 1.8E-30 182.2 8.8 111 99-211 3-116 (198)
34 cd04119 RJL RJL (RabJ-Like) su 99.9 9.3E-25 2E-29 170.5 13.7 112 101-212 1-118 (168)
35 KOG0083 GTPase Rab26/Rab37, sm 99.9 5.1E-27 1.1E-31 176.6 0.7 107 104-210 1-109 (192)
36 cd01865 Rab3 Rab3 subfamily. 99.9 1.1E-24 2.3E-29 171.4 14.0 112 101-212 2-114 (165)
37 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.4E-24 3E-29 170.5 14.3 113 100-212 2-115 (166)
38 cd01867 Rab8_Rab10_Rab13_like 99.9 1.1E-24 2.5E-29 171.6 13.8 113 100-212 3-116 (167)
39 cd01871 Rac1_like Rac1-like su 99.9 1.6E-24 3.5E-29 172.8 14.7 111 100-212 1-113 (174)
40 cd04136 Rap_like Rap-like subf 99.9 1.7E-24 3.6E-29 168.8 14.1 112 100-212 1-114 (163)
41 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.8E-24 3.8E-29 172.1 13.9 112 100-212 2-115 (172)
42 cd00877 Ran Ran (Ras-related n 99.9 3.3E-24 7.1E-29 169.5 15.2 111 101-212 1-112 (166)
43 cd04124 RabL2 RabL2 subfamily. 99.9 3.5E-24 7.5E-29 168.2 14.7 111 101-212 1-112 (161)
44 cd04125 RabA_like RabA-like su 99.9 2.7E-24 6E-29 172.8 14.4 112 101-212 1-113 (188)
45 PTZ00369 Ras-like protein; Pro 99.9 3.6E-24 7.8E-29 172.6 14.8 114 98-212 3-118 (189)
46 cd04176 Rap2 Rap2 subgroup. T 99.9 3.9E-24 8.4E-29 167.3 14.5 112 100-212 1-114 (163)
47 PLN03110 Rab GTPase; Provision 99.9 5.5E-24 1.2E-28 175.5 15.2 114 99-212 11-125 (216)
48 cd01864 Rab19 Rab19 subfamily. 99.9 4.3E-24 9.3E-29 167.7 13.4 113 100-212 3-116 (165)
49 cd04116 Rab9 Rab9 subfamily. 99.9 6.5E-24 1.4E-28 167.3 14.5 113 99-211 4-121 (170)
50 cd01868 Rab11_like Rab11-like. 99.9 5.7E-24 1.2E-28 166.7 14.0 112 100-211 3-115 (165)
51 smart00176 RAN Ran (Ras-relate 99.9 3.6E-24 7.9E-29 174.9 13.3 106 106-212 1-107 (200)
52 cd04113 Rab4 Rab4 subfamily. 99.9 6.3E-24 1.4E-28 165.8 14.1 112 101-212 1-113 (161)
53 cd04110 Rab35 Rab35 subfamily. 99.9 5.8E-24 1.2E-28 172.9 14.3 112 100-212 6-118 (199)
54 cd04134 Rho3 Rho3 subfamily. 99.9 7.5E-24 1.6E-28 170.8 14.8 110 101-212 1-112 (189)
55 cd04127 Rab27A Rab27a subfamil 99.9 4.5E-24 9.7E-29 169.7 13.3 113 100-212 4-128 (180)
56 cd04109 Rab28 Rab28 subfamily. 99.9 5.3E-24 1.1E-28 175.2 14.0 111 101-211 1-116 (215)
57 cd01866 Rab2 Rab2 subfamily. 99.9 8.1E-24 1.8E-28 167.0 14.1 113 100-212 4-117 (168)
58 cd04175 Rap1 Rap1 subgroup. T 99.9 8.5E-24 1.8E-28 165.7 13.9 112 100-212 1-114 (164)
59 cd04106 Rab23_lke Rab23-like s 99.9 7.2E-24 1.6E-28 165.3 13.3 111 101-212 1-114 (162)
60 cd04118 Rab24 Rab24 subfamily. 99.9 1.2E-23 2.7E-28 169.4 14.8 111 101-212 1-113 (193)
61 cd04103 Centaurin_gamma Centau 99.9 1.4E-23 3E-28 165.1 14.6 106 101-212 1-107 (158)
62 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1E-23 2.3E-28 166.7 14.0 113 100-212 2-117 (170)
63 cd04112 Rab26 Rab26 subfamily. 99.9 9.8E-24 2.1E-28 170.3 13.9 112 101-212 1-114 (191)
64 KOG0097 GTPase Rab14, small G 99.9 1.8E-24 3.9E-29 164.4 8.5 112 100-211 11-123 (215)
65 cd04143 Rhes_like Rhes_like su 99.9 9.2E-24 2E-28 177.8 13.7 111 101-212 1-121 (247)
66 cd04111 Rab39 Rab39 subfamily. 99.9 1.4E-23 3.1E-28 172.5 14.2 112 100-211 2-116 (211)
67 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.9E-23 4E-28 162.2 14.0 112 100-212 1-114 (162)
68 cd01861 Rab6 Rab6 subfamily. 99.9 2.7E-23 5.9E-28 161.8 14.0 112 101-212 1-113 (161)
69 cd04130 Wrch_1 Wrch-1 subfamil 99.9 3.6E-23 7.7E-28 164.1 14.9 110 101-212 1-112 (173)
70 cd04132 Rho4_like Rho4-like su 99.9 2.3E-23 4.9E-28 166.9 13.6 110 101-212 1-113 (187)
71 cd04144 Ras2 Ras2 subfamily. 99.9 1.9E-23 4.2E-28 168.5 12.9 109 102-211 1-113 (190)
72 cd04126 Rab20 Rab20 subfamily. 99.9 3.1E-23 6.7E-28 171.8 14.1 108 101-212 1-108 (220)
73 smart00174 RHO Rho (Ras homolo 99.9 6.3E-23 1.4E-27 162.0 14.6 108 103-212 1-110 (174)
74 cd04140 ARHI_like ARHI subfami 99.9 6.2E-23 1.4E-27 161.4 14.2 111 101-212 2-116 (165)
75 KOG1673 Ras GTPases [General f 99.9 1.1E-23 2.5E-28 162.1 9.5 120 93-212 13-133 (205)
76 cd01860 Rab5_related Rab5-rela 99.9 6.8E-23 1.5E-27 159.9 14.0 113 100-212 1-114 (163)
77 cd01892 Miro2 Miro2 subfamily. 99.9 8.3E-23 1.8E-27 162.0 14.4 112 99-212 3-116 (169)
78 cd04101 RabL4 RabL4 (Rab-like4 99.9 5.8E-23 1.3E-27 160.6 12.9 111 101-212 1-115 (164)
79 PLN03108 Rab family protein; P 99.9 7.2E-23 1.6E-27 168.0 13.9 113 100-212 6-119 (210)
80 smart00175 RAB Rab subfamily o 99.9 1E-22 2.2E-27 158.7 13.8 112 101-212 1-113 (164)
81 cd04142 RRP22 RRP22 subfamily. 99.9 1.6E-22 3.4E-27 164.9 14.7 112 101-212 1-124 (198)
82 KOG0081 GTPase Rab27, small G 99.9 1.2E-24 2.7E-29 168.0 2.1 112 100-211 9-131 (219)
83 smart00173 RAS Ras subfamily o 99.9 1.5E-22 3.3E-27 158.3 13.7 111 101-212 1-113 (164)
84 cd01873 RhoBTB RhoBTB subfamil 99.9 1.3E-22 2.8E-27 165.0 13.6 110 100-212 2-128 (195)
85 cd04145 M_R_Ras_like M-Ras/R-R 99.9 3.6E-22 7.8E-27 155.8 14.4 112 100-212 2-115 (164)
86 PLN03118 Rab family protein; P 99.9 4.7E-22 1E-26 163.0 15.5 113 99-211 13-127 (211)
87 cd04135 Tc10 TC10 subfamily. 99.9 7.4E-22 1.6E-26 155.9 15.1 109 101-211 1-111 (174)
88 cd04123 Rab21 Rab21 subfamily. 99.9 5.2E-22 1.1E-26 154.0 14.0 112 101-212 1-113 (162)
89 PTZ00132 GTP-binding nuclear p 99.9 7.5E-22 1.6E-26 162.1 15.2 116 95-211 4-120 (215)
90 cd01863 Rab18 Rab18 subfamily. 99.9 8.6E-22 1.9E-26 153.5 14.6 112 101-212 1-114 (161)
91 cd04177 RSR1 RSR1 subgroup. R 99.9 7.9E-22 1.7E-26 155.5 14.4 112 100-212 1-114 (168)
92 cd01870 RhoA_like RhoA-like su 99.9 9.1E-22 2E-26 155.6 14.5 109 101-211 2-112 (175)
93 KOG0395 Ras-related GTPase [Ge 99.9 2.6E-22 5.5E-27 163.5 11.3 113 99-212 2-116 (196)
94 cd04146 RERG_RasL11_like RERG/ 99.9 6.6E-22 1.4E-26 155.2 13.2 110 102-212 1-114 (165)
95 cd01862 Rab7 Rab7 subfamily. 99.9 1.1E-21 2.4E-26 154.1 14.1 111 101-211 1-116 (172)
96 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 8E-22 1.7E-26 155.6 11.6 106 102-212 1-107 (164)
97 cd04114 Rab30 Rab30 subfamily. 99.9 3.4E-21 7.4E-26 151.3 15.1 113 99-211 6-119 (169)
98 cd04150 Arf1_5_like Arf1-Arf5- 99.9 8E-22 1.7E-26 154.8 11.3 107 101-211 1-108 (159)
99 KOG4252 GTP-binding protein [S 99.9 1.7E-23 3.6E-28 164.6 1.5 114 98-212 18-132 (246)
100 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.3E-21 2.7E-26 157.1 12.4 114 99-212 2-117 (183)
101 smart00177 ARF ARF-like small 99.9 1.1E-21 2.3E-26 156.5 11.9 110 99-212 12-122 (175)
102 cd04149 Arf6 Arf6 subfamily. 99.9 7.3E-22 1.6E-26 156.5 10.9 110 99-212 8-118 (168)
103 cd04148 RGK RGK subfamily. Th 99.9 2.2E-21 4.7E-26 160.7 14.1 110 101-212 1-114 (221)
104 PLN00223 ADP-ribosylation fact 99.9 9.3E-22 2E-26 157.9 10.2 110 99-212 16-126 (181)
105 PF08477 Miro: Miro-like prote 99.9 3.7E-21 7.9E-26 143.2 12.6 110 102-212 1-116 (119)
106 cd00154 Rab Rab family. Rab G 99.9 6.9E-21 1.5E-25 146.2 13.2 112 101-212 1-113 (159)
107 cd01893 Miro1 Miro1 subfamily. 99.9 6.3E-21 1.4E-25 150.2 13.3 110 101-212 1-111 (166)
108 cd04147 Ras_dva Ras-dva subfam 99.9 6.9E-21 1.5E-25 154.6 13.4 110 102-212 1-112 (198)
109 cd04158 ARD1 ARD1 subfamily. 99.9 5.2E-21 1.1E-25 151.3 11.4 107 102-212 1-108 (169)
110 PTZ00133 ADP-ribosylation fact 99.9 4.5E-21 9.7E-26 154.0 11.2 109 100-212 17-126 (182)
111 cd00157 Rho Rho (Ras homology) 99.8 3.6E-20 7.9E-25 145.4 15.3 110 101-212 1-112 (171)
112 COG1100 GTPase SAR1 and relate 99.8 9.1E-21 2E-25 155.2 12.2 112 100-211 5-118 (219)
113 cd04129 Rho2 Rho2 subfamily. 99.8 5.1E-20 1.1E-24 148.1 14.9 110 101-212 2-113 (187)
114 cd04139 RalA_RalB RalA/RalB su 99.8 4E-20 8.8E-25 143.8 13.6 110 101-211 1-112 (164)
115 cd04161 Arl2l1_Arl13_like Arl2 99.8 3.2E-20 6.9E-25 146.8 11.2 106 102-212 1-108 (167)
116 cd00876 Ras Ras family. The R 99.8 6.5E-20 1.4E-24 141.9 12.6 110 102-212 1-112 (160)
117 cd04154 Arl2 Arl2 subfamily. 99.8 4.4E-20 9.6E-25 146.3 11.8 110 98-211 12-122 (173)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.8 8.9E-20 1.9E-24 142.0 11.6 108 102-212 1-109 (160)
119 cd04137 RheB Rheb (Ras Homolog 99.8 1.6E-19 3.5E-24 143.6 12.9 110 101-211 2-113 (180)
120 cd04157 Arl6 Arl6 subfamily. 99.8 1.2E-19 2.6E-24 141.2 10.8 106 102-211 1-111 (162)
121 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 1.5E-19 3.3E-24 143.7 11.4 108 100-211 15-123 (174)
122 cd04151 Arl1 Arl1 subfamily. 99.8 2.4E-19 5.1E-24 139.9 10.2 107 102-212 1-108 (158)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.8 7E-19 1.5E-23 136.8 11.8 107 102-212 1-108 (158)
124 smart00178 SAR Sar1p-like memb 99.8 1.5E-18 3.3E-23 139.4 11.0 110 99-212 16-126 (184)
125 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.3E-18 2.7E-23 138.1 9.8 114 98-212 8-122 (216)
126 cd00879 Sar1 Sar1 subfamily. 99.8 2.7E-18 5.8E-23 137.8 11.5 110 99-212 18-128 (190)
127 cd04159 Arl10_like Arl10-like 99.8 3.2E-18 6.9E-23 131.5 11.4 106 102-211 1-108 (159)
128 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3.7E-18 8E-23 133.7 11.1 106 102-211 1-114 (167)
129 PF00025 Arf: ADP-ribosylation 99.8 7.7E-18 1.7E-22 134.5 11.1 111 98-212 12-123 (175)
130 TIGR00231 small_GTP small GTP- 99.7 3.8E-17 8.3E-22 124.5 12.9 112 100-211 1-115 (161)
131 KOG0070 GTP-binding ADP-ribosy 99.7 1.2E-17 2.7E-22 132.1 9.5 112 96-211 13-125 (181)
132 PTZ00099 rab6; Provisional 99.7 4.5E-17 9.7E-22 130.4 11.4 91 122-212 2-93 (176)
133 cd04155 Arl3 Arl3 subfamily. 99.7 8.2E-17 1.8E-21 126.9 11.3 109 99-211 13-122 (173)
134 cd04105 SR_beta Signal recogni 99.7 1.3E-16 2.8E-21 130.5 10.9 110 102-211 2-116 (203)
135 cd01890 LepA LepA subfamily. 99.7 1.5E-16 3.3E-21 126.0 10.5 106 102-211 2-126 (179)
136 KOG0073 GTP-binding ADP-ribosy 99.7 2.9E-16 6.3E-21 122.1 11.2 110 99-212 15-125 (185)
137 KOG3883 Ras family small GTPas 99.6 2.2E-15 4.7E-20 116.2 11.5 113 100-213 9-127 (198)
138 cd01891 TypA_BipA TypA (tyrosi 99.6 6.5E-16 1.4E-20 124.9 9.0 107 101-211 3-124 (194)
139 KOG0071 GTP-binding ADP-ribosy 99.6 1.2E-15 2.6E-20 116.0 9.7 110 99-212 16-126 (180)
140 cd01898 Obg Obg subfamily. Th 99.6 2.3E-15 4.9E-20 118.0 11.3 109 102-211 2-121 (170)
141 KOG4423 GTP-binding protein-li 99.6 3E-18 6.6E-23 135.7 -5.2 114 99-212 24-143 (229)
142 cd01897 NOG NOG1 is a nucleola 99.6 8.4E-15 1.8E-19 114.7 12.0 108 102-212 2-121 (168)
143 cd01878 HflX HflX subfamily. 99.6 3.6E-15 7.8E-20 121.2 10.0 111 100-211 41-160 (204)
144 cd04171 SelB SelB subfamily. 99.6 5.3E-15 1.1E-19 114.8 10.3 89 102-191 2-97 (164)
145 TIGR02528 EutP ethanolamine ut 99.6 7.5E-16 1.6E-20 117.8 4.5 81 101-196 1-86 (142)
146 cd00882 Ras_like_GTPase Ras-li 99.6 1.5E-14 3.3E-19 108.6 11.3 106 105-211 1-109 (157)
147 KOG0074 GTP-binding ADP-ribosy 99.6 1.5E-14 3.2E-19 110.3 10.9 111 98-211 15-126 (185)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1.7E-14 3.7E-19 112.7 10.2 83 102-184 2-86 (168)
149 TIGR00450 mnmE_trmE_thdF tRNA 99.6 2.9E-14 6.2E-19 129.3 13.0 106 99-211 202-317 (442)
150 TIGR03156 GTP_HflX GTP-binding 99.5 2.8E-14 6E-19 125.9 10.7 111 100-211 189-308 (351)
151 cd01879 FeoB Ferrous iron tran 99.5 1.2E-13 2.6E-18 106.7 11.1 99 105-211 1-108 (158)
152 PRK04213 GTP-binding protein; 99.5 8.4E-15 1.8E-19 118.6 4.0 86 99-190 8-106 (201)
153 cd04164 trmE TrmE (MnmE, ThdF, 99.5 2.9E-13 6.3E-18 104.0 12.0 103 101-211 2-114 (157)
154 PRK03003 GTP-binding protein D 99.5 1.4E-13 3E-18 125.9 11.3 106 101-212 39-154 (472)
155 cd01881 Obg_like The Obg-like 99.5 1.9E-13 4.2E-18 107.3 9.8 104 105-211 1-127 (176)
156 KOG1707 Predicted Ras related/ 99.5 1.3E-13 2.8E-18 125.4 8.9 116 96-212 5-123 (625)
157 PRK05291 trmE tRNA modificatio 99.5 3.8E-13 8.3E-18 122.3 12.0 104 100-211 215-328 (449)
158 TIGR01393 lepA GTP-binding pro 99.5 3.4E-13 7.4E-18 126.3 10.8 107 101-211 4-129 (595)
159 PRK11058 GTPase HflX; Provisio 99.5 5.3E-13 1.1E-17 120.5 11.6 110 101-211 198-316 (426)
160 PRK03003 GTP-binding protein D 99.5 3.6E-13 7.8E-18 123.2 10.7 106 100-211 211-329 (472)
161 KOG0075 GTP-binding ADP-ribosy 99.5 7E-14 1.5E-18 107.2 4.7 108 100-211 20-129 (186)
162 PRK15494 era GTPase Era; Provi 99.5 7.6E-13 1.6E-17 116.3 11.9 110 98-213 50-170 (339)
163 cd04167 Snu114p Snu114p subfam 99.4 1.1E-12 2.3E-17 107.8 10.3 107 102-212 2-132 (213)
164 PRK00093 GTP-binding protein D 99.4 1.2E-12 2.5E-17 118.4 11.4 103 101-211 2-116 (435)
165 PRK12299 obgE GTPase CgtA; Rev 99.4 1.4E-12 3E-17 114.4 11.2 110 101-211 159-278 (335)
166 TIGR02729 Obg_CgtA Obg family 99.4 2.3E-12 5E-17 112.8 11.9 110 101-211 158-280 (329)
167 cd01894 EngA1 EngA1 subfamily. 99.4 1.9E-12 4.2E-17 99.5 9.9 102 104-211 1-112 (157)
168 TIGR03598 GTPase_YsxC ribosome 99.4 1.7E-12 3.7E-17 103.6 9.6 106 98-210 16-135 (179)
169 cd01895 EngA2 EngA2 subfamily. 99.4 8.7E-12 1.9E-16 97.0 12.0 106 100-211 2-120 (174)
170 cd00881 GTP_translation_factor 99.4 3E-12 6.4E-17 101.5 9.5 106 102-211 1-121 (189)
171 cd01850 CDC_Septin CDC/Septin. 99.4 4.2E-12 9E-17 108.7 10.6 61 99-159 3-74 (276)
172 smart00010 small_GTPase Small 99.4 4E-12 8.6E-17 94.3 9.1 82 101-211 1-84 (124)
173 KOG0076 GTP-binding ADP-ribosy 99.4 5.1E-13 1.1E-17 105.0 4.1 110 98-211 15-133 (197)
174 cd01889 SelB_euk SelB subfamil 99.4 3.7E-12 8E-17 102.7 9.2 93 101-193 1-113 (192)
175 TIGR00436 era GTP-binding prot 99.3 8.2E-12 1.8E-16 106.3 10.8 102 102-211 2-114 (270)
176 TIGR00487 IF-2 translation ini 99.3 1E-11 2.2E-16 116.1 11.9 86 98-184 85-171 (587)
177 TIGR03594 GTPase_EngA ribosome 99.3 1.8E-11 3.8E-16 110.4 13.0 106 99-210 171-289 (429)
178 PRK00454 engB GTP-binding prot 99.3 7.8E-12 1.7E-16 100.4 9.1 87 99-188 23-123 (196)
179 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 1.7E-11 3.7E-16 102.2 11.1 112 102-213 1-121 (232)
180 cd04168 TetM_like Tet(M)-like 99.3 7.6E-12 1.6E-16 104.8 9.0 107 102-212 1-125 (237)
181 cd04163 Era Era subfamily. Er 99.3 2.3E-11 5E-16 93.6 11.1 84 99-184 2-95 (168)
182 PRK12297 obgE GTPase CgtA; Rev 99.3 3.5E-11 7.5E-16 108.5 12.3 108 101-211 159-281 (424)
183 TIGR03594 GTPase_EngA ribosome 99.3 1.8E-11 3.9E-16 110.3 10.5 102 102-211 1-114 (429)
184 cd01896 DRG The developmentall 99.3 5.4E-11 1.2E-15 99.4 12.1 107 102-210 2-117 (233)
185 TIGR00491 aIF-2 translation in 99.3 1.9E-11 4E-16 114.3 9.8 104 101-211 5-128 (590)
186 PRK05306 infB translation init 99.3 4E-11 8.6E-16 115.1 12.1 106 97-211 287-396 (787)
187 TIGR00475 selB selenocysteine- 99.3 3.3E-11 7.2E-16 112.8 11.2 89 101-191 1-96 (581)
188 CHL00189 infB translation init 99.3 2.3E-11 5E-16 115.9 10.0 106 99-211 243-354 (742)
189 PRK10218 GTP-binding protein; 99.3 4.7E-11 1E-15 112.0 11.9 110 100-213 5-130 (607)
190 PRK09518 bifunctional cytidyla 99.3 4.2E-11 9.2E-16 114.6 11.7 106 99-211 274-390 (712)
191 PRK09518 bifunctional cytidyla 99.2 3.2E-11 7E-16 115.4 10.4 106 100-211 450-568 (712)
192 cd00880 Era_like Era (E. coli 99.2 8.5E-11 1.8E-15 89.2 10.3 102 105-211 1-111 (163)
193 cd01876 YihA_EngB The YihA (En 99.2 3.8E-11 8.3E-16 92.7 8.4 101 102-211 1-117 (170)
194 COG2229 Predicted GTPase [Gene 99.2 6E-11 1.3E-15 94.3 9.4 111 95-211 5-128 (187)
195 PRK15467 ethanolamine utilizat 99.2 2.5E-11 5.4E-16 95.3 7.4 82 102-197 3-88 (158)
196 cd04169 RF3 RF3 subfamily. Pe 99.2 9.3E-11 2E-15 99.9 10.7 107 101-211 3-130 (267)
197 PRK05433 GTP-binding protein L 99.2 5.3E-11 1.1E-15 111.7 10.0 108 101-212 8-135 (600)
198 KOG0072 GTP-binding ADP-ribosy 99.2 1.3E-11 2.8E-16 94.5 4.7 109 99-211 17-126 (182)
199 PF01926 MMR_HSR1: 50S ribosom 99.2 3.5E-10 7.5E-15 83.9 12.4 103 102-211 1-114 (116)
200 cd04104 p47_IIGP_like p47 (47- 99.2 1.2E-10 2.7E-15 94.5 9.6 97 100-200 1-106 (197)
201 TIGR00437 feoB ferrous iron tr 99.2 1.8E-10 3.8E-15 108.1 11.4 98 107-212 1-107 (591)
202 PRK04004 translation initiatio 99.2 1.7E-10 3.6E-15 108.1 10.6 106 99-211 5-130 (586)
203 PRK00089 era GTPase Era; Revie 99.2 2.5E-10 5.3E-15 98.0 10.8 83 98-183 3-96 (292)
204 PRK12296 obgE GTPase CgtA; Rev 99.2 2.8E-10 6.1E-15 104.2 11.1 109 101-211 160-291 (500)
205 cd01885 EF2 EF2 (for archaea a 99.1 1.6E-10 3.5E-15 95.9 8.6 108 102-213 2-135 (222)
206 TIGR00483 EF-1_alpha translati 99.1 1.7E-10 3.6E-15 104.3 8.8 89 97-187 4-124 (426)
207 TIGR01394 TypA_BipA GTP-bindin 99.1 2.3E-10 5E-15 107.2 9.6 108 102-213 3-126 (594)
208 PRK12317 elongation factor 1-a 99.1 3.7E-10 8.1E-15 102.0 10.6 87 98-184 4-120 (425)
209 PRK00093 GTP-binding protein D 99.1 6.2E-10 1.4E-14 100.6 12.0 108 99-212 172-293 (435)
210 PF02421 FeoB_N: Ferrous iron 99.1 1.5E-09 3.3E-14 85.3 11.9 106 101-214 1-115 (156)
211 PRK09554 feoB ferrous iron tra 99.1 9.1E-10 2E-14 106.0 12.8 107 99-213 2-121 (772)
212 cd04166 CysN_ATPS CysN_ATPS su 99.1 4.6E-10 9.9E-15 92.0 8.1 84 102-185 1-114 (208)
213 PRK12298 obgE GTPase CgtA; Rev 99.1 9.3E-10 2E-14 98.4 10.7 108 101-211 160-282 (390)
214 PF09439 SRPRB: Signal recogni 99.1 2.1E-10 4.5E-15 92.1 5.3 108 101-211 4-119 (181)
215 PRK13351 elongation factor G; 99.1 3.3E-10 7.2E-15 108.1 7.6 108 100-211 8-132 (687)
216 cd04170 EF-G_bact Elongation f 99.0 8.6E-10 1.9E-14 93.7 8.2 107 102-212 1-125 (268)
217 PRK00741 prfC peptide chain re 99.0 1E-09 2.3E-14 101.6 9.3 109 99-211 9-138 (526)
218 cd01899 Ygr210 Ygr210 subfamil 99.0 1.9E-09 4.1E-14 94.0 10.3 81 103-183 1-111 (318)
219 KOG0077 Vesicle coat complex C 99.0 5.3E-10 1.1E-14 87.5 5.2 110 100-213 20-131 (193)
220 TIGR00490 aEF-2 translation el 99.0 1.3E-09 2.8E-14 104.6 9.0 85 100-184 19-122 (720)
221 TIGR00503 prfC peptide chain r 99.0 2.8E-09 6E-14 98.8 10.0 110 99-212 10-141 (527)
222 cd01888 eIF2_gamma eIF2-gamma 99.0 2.8E-09 6.1E-14 87.0 8.5 93 101-193 1-132 (203)
223 TIGR00991 3a0901s02IAP34 GTP-b 99.0 6.2E-09 1.3E-13 90.0 10.6 85 97-183 35-130 (313)
224 PRK09602 translation-associate 98.9 1.3E-08 2.9E-13 91.2 11.0 82 101-182 2-113 (396)
225 COG0486 ThdF Predicted GTPase 98.9 1.8E-08 4E-13 90.4 11.6 84 99-184 216-309 (454)
226 PRK10512 selenocysteinyl-tRNA- 98.9 1.5E-08 3.2E-13 95.5 10.8 88 102-190 2-96 (614)
227 COG1160 Predicted GTPases [Gen 98.8 2.6E-08 5.6E-13 89.2 10.7 104 101-212 4-120 (444)
228 TIGR00485 EF-Tu translation el 98.8 2.4E-08 5.2E-13 89.5 10.4 88 97-184 9-111 (394)
229 PF00009 GTP_EFTU: Elongation 98.8 7.9E-09 1.7E-13 83.1 6.5 111 100-213 3-132 (188)
230 TIGR03680 eif2g_arch translati 98.8 9.8E-09 2.1E-13 92.4 7.6 87 98-184 2-116 (406)
231 cd01853 Toc34_like Toc34-like 98.8 4.2E-08 9E-13 82.8 10.5 85 97-183 28-126 (249)
232 cd01883 EF1_alpha Eukaryotic e 98.8 1.7E-08 3.7E-13 83.3 7.9 83 102-184 1-113 (219)
233 cd01886 EF-G Elongation factor 98.8 3.4E-08 7.4E-13 84.3 9.5 108 102-213 1-126 (270)
234 cd01884 EF_Tu EF-Tu subfamily. 98.8 4.3E-08 9.3E-13 79.8 9.3 110 100-213 2-128 (195)
235 cd04165 GTPBP1_like GTPBP1-lik 98.8 4.4E-08 9.5E-13 81.4 9.2 107 102-212 1-147 (224)
236 cd00066 G-alpha G protein alph 98.8 6.7E-08 1.4E-12 84.3 10.4 65 147-211 160-235 (317)
237 TIGR00484 EF-G translation elo 98.7 4E-08 8.7E-13 93.9 9.2 109 100-212 10-136 (689)
238 PRK04000 translation initiatio 98.7 4E-08 8.6E-13 88.6 8.6 94 98-191 7-132 (411)
239 KOG3886 GTP-binding protein [S 98.7 1.4E-08 2.9E-13 83.9 5.0 113 100-213 4-126 (295)
240 PRK12735 elongation factor Tu; 98.7 7.5E-08 1.6E-12 86.4 10.2 112 98-213 10-138 (396)
241 cd01852 AIG1 AIG1 (avrRpt2-ind 98.7 1.9E-07 4E-12 75.6 10.7 81 101-183 1-95 (196)
242 PLN03126 Elongation factor Tu; 98.7 9.8E-08 2.1E-12 87.6 9.8 113 97-213 78-207 (478)
243 PRK12736 elongation factor Tu; 98.7 1.3E-07 2.9E-12 84.7 10.0 113 97-213 9-138 (394)
244 smart00275 G_alpha G protein a 98.7 1.4E-07 3E-12 83.2 9.5 66 147-212 183-259 (342)
245 PLN00043 elongation factor 1-a 98.6 4E-08 8.6E-13 89.5 6.1 91 98-189 5-125 (447)
246 KOG1707 Predicted Ras related/ 98.6 3.4E-07 7.3E-12 84.1 11.8 113 95-211 420-533 (625)
247 COG3596 Predicted GTPase [Gene 98.6 6.3E-08 1.4E-12 81.9 6.1 109 97-209 36-153 (296)
248 COG1160 Predicted GTPases [Gen 98.6 3.7E-07 7.9E-12 82.0 10.5 109 99-212 177-298 (444)
249 KOG0705 GTPase-activating prot 98.6 3.6E-08 7.8E-13 89.8 4.0 112 93-210 23-135 (749)
250 KOG1423 Ras-like GTPase ERA [C 98.6 4.1E-07 9E-12 78.0 10.0 114 90-209 62-190 (379)
251 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1.3E-07 2.8E-12 72.7 6.3 54 102-158 85-138 (141)
252 CHL00071 tufA elongation facto 98.6 4.4E-07 9.4E-12 81.8 10.3 113 97-213 9-138 (409)
253 COG1159 Era GTPase [General fu 98.6 8.7E-07 1.9E-11 75.7 11.1 107 98-212 4-123 (298)
254 KOG1191 Mitochondrial GTPase [ 98.5 4.4E-07 9.5E-12 81.9 9.1 99 98-198 266-377 (531)
255 TIGR02034 CysN sulfate adenyly 98.5 2.8E-07 6.1E-12 83.0 7.9 84 101-184 1-116 (406)
256 COG0218 Predicted GTPase [Gene 98.5 7.1E-07 1.5E-11 72.3 9.0 106 99-211 23-142 (200)
257 PF10662 PduV-EutP: Ethanolami 98.5 1.7E-07 3.6E-12 72.5 4.9 73 101-186 2-78 (143)
258 PRK05124 cysN sulfate adenylyl 98.5 6E-07 1.3E-11 82.4 9.2 88 97-184 24-143 (474)
259 PRK00049 elongation factor Tu; 98.5 9.8E-07 2.1E-11 79.2 10.3 112 98-213 10-138 (396)
260 COG1084 Predicted GTPase [Gene 98.5 1.5E-06 3.2E-11 75.2 10.3 105 100-210 168-286 (346)
261 PLN03127 Elongation factor Tu; 98.5 2E-06 4.3E-11 78.4 11.6 113 97-213 58-187 (447)
262 PRK12740 elongation factor G; 98.5 3.7E-07 8E-12 87.0 7.1 103 106-212 1-121 (668)
263 cd01859 MJ1464 MJ1464. This f 98.4 6E-07 1.3E-11 69.8 6.8 55 100-157 101-155 (156)
264 COG1163 DRG Predicted GTPase [ 98.4 2E-06 4.4E-11 74.3 10.4 95 100-196 63-166 (365)
265 PF00350 Dynamin_N: Dynamin fa 98.4 3.1E-06 6.8E-11 66.2 10.6 62 149-212 102-167 (168)
266 PF00735 Septin: Septin; Inte 98.4 1.3E-06 2.9E-11 75.0 8.5 61 99-159 3-74 (281)
267 PRK12739 elongation factor G; 98.4 7.5E-07 1.6E-11 85.3 7.7 110 100-213 8-135 (691)
268 PTZ00141 elongation factor 1- 98.4 2E-06 4.3E-11 78.5 9.8 87 98-184 5-121 (446)
269 PF04548 AIG1: AIG1 family; I 98.4 2.3E-06 5E-11 70.4 9.0 80 101-182 1-94 (212)
270 KOG0090 Signal recognition par 98.4 8.4E-07 1.8E-11 72.5 6.1 104 102-209 40-150 (238)
271 PRK05506 bifunctional sulfate 98.4 1.4E-06 3E-11 82.7 8.6 87 98-184 22-140 (632)
272 cd01856 YlqF YlqF. Proteins o 98.4 1E-06 2.3E-11 69.8 6.5 56 100-158 115-170 (171)
273 PTZ00258 GTP-binding protein; 98.3 2E-06 4.3E-11 76.9 8.6 84 99-182 20-126 (390)
274 TIGR00993 3a0901s04IAP86 chlor 98.3 4E-06 8.6E-11 78.9 10.1 100 99-202 117-232 (763)
275 PF05783 DLIC: Dynein light in 98.3 6.3E-06 1.4E-10 75.4 10.0 100 100-201 25-131 (472)
276 PRK00007 elongation factor G; 98.3 3.1E-06 6.8E-11 81.1 8.4 110 100-213 10-137 (693)
277 cd01900 YchF YchF subfamily. 98.2 4.5E-06 9.8E-11 71.4 7.7 80 103-182 1-103 (274)
278 COG2262 HflX GTPases [General 98.2 1.6E-05 3.4E-10 70.7 11.1 111 100-211 192-311 (411)
279 PRK07560 elongation factor EF- 98.2 4.7E-06 1E-10 80.4 8.0 111 100-213 20-149 (731)
280 PRK09601 GTP-binding protein Y 98.2 2.3E-05 5.1E-10 69.4 11.7 82 101-182 3-107 (364)
281 COG0370 FeoB Fe2+ transport sy 98.2 2.6E-05 5.7E-10 73.2 12.5 85 100-186 3-96 (653)
282 PLN00116 translation elongatio 98.2 3.8E-06 8.2E-11 82.1 7.3 110 100-213 19-160 (843)
283 PF05049 IIGP: Interferon-indu 98.2 7E-06 1.5E-10 72.9 8.1 105 99-210 34-147 (376)
284 PTZ00416 elongation factor 2; 98.2 6.6E-06 1.4E-10 80.4 8.3 110 100-213 19-154 (836)
285 cd01858 NGP_1 NGP-1. Autoanti 98.1 7.3E-06 1.6E-10 63.9 6.9 55 100-157 102-156 (157)
286 TIGR03596 GTPase_YlqF ribosome 98.1 1.4E-05 2.9E-10 68.4 8.2 57 99-158 117-173 (276)
287 cd01882 BMS1 Bms1. Bms1 is an 98.1 3.2E-05 6.9E-10 64.2 9.9 102 100-213 39-143 (225)
288 cd04178 Nucleostemin_like Nucl 98.0 1.2E-05 2.6E-10 64.1 6.6 55 100-157 117-171 (172)
289 PRK09563 rbgA GTPase YlqF; Rev 98.0 2E-05 4.4E-10 67.8 7.6 58 99-159 120-177 (287)
290 KOG1489 Predicted GTP-binding 98.0 5.9E-05 1.3E-09 65.2 10.2 110 102-212 198-320 (366)
291 KOG3905 Dynein light intermedi 98.0 3.4E-05 7.5E-10 66.9 8.6 101 100-202 52-159 (473)
292 PRK14845 translation initiatio 98.0 2.1E-05 4.6E-10 77.9 8.2 90 111-211 472-585 (1049)
293 COG5019 CDC3 Septin family pro 97.9 5.4E-05 1.2E-09 66.5 8.9 64 98-161 21-95 (373)
294 cd01855 YqeH YqeH. YqeH is an 97.9 2.8E-05 6.2E-10 62.4 5.7 54 101-157 128-189 (190)
295 COG5256 TEF1 Translation elong 97.8 0.0001 2.2E-09 65.7 8.5 116 97-213 4-155 (428)
296 KOG2655 Septin family protein 97.8 6.1E-05 1.3E-09 66.4 6.7 62 99-160 20-91 (366)
297 TIGR02836 spore_IV_A stage IV 97.8 0.00025 5.5E-09 63.8 10.3 109 100-211 17-187 (492)
298 COG1161 Predicted GTPases [Gen 97.7 7.2E-05 1.6E-09 65.5 6.4 59 98-159 130-188 (322)
299 PRK13768 GTPase; Provisional 97.7 4E-05 8.6E-10 64.8 4.3 61 149-210 98-168 (253)
300 KOG1547 Septin CDC10 and relat 97.7 5.2E-05 1.1E-09 63.4 4.8 61 99-159 45-115 (336)
301 cd01851 GBP Guanylate-binding 97.7 0.00042 9.1E-09 57.5 10.3 83 100-183 7-103 (224)
302 PRK12288 GTPase RsgA; Reviewed 97.6 7.4E-05 1.6E-09 66.1 4.8 58 102-162 207-271 (347)
303 PF03193 DUF258: Protein of un 97.6 7.3E-05 1.6E-09 59.0 3.9 24 101-124 36-59 (161)
304 cd01849 YlqF_related_GTPase Yl 97.6 0.00024 5.1E-09 55.3 6.6 53 100-157 100-154 (155)
305 COG0480 FusA Translation elong 97.6 0.00027 5.8E-09 67.7 8.1 112 99-213 9-138 (697)
306 PRK12289 GTPase RsgA; Reviewed 97.6 0.00015 3.3E-09 64.2 6.1 57 102-161 174-237 (352)
307 KOG4273 Uncharacterized conser 97.5 0.00031 6.7E-09 59.1 7.3 95 102-196 6-103 (418)
308 KOG0468 U5 snRNP-specific prot 97.5 0.00079 1.7E-08 63.4 10.1 110 97-210 125-255 (971)
309 TIGR00157 ribosome small subun 97.5 0.00026 5.6E-09 59.6 5.9 58 101-162 121-185 (245)
310 COG0536 Obg Predicted GTPase [ 97.4 0.00084 1.8E-08 58.7 9.0 107 102-211 161-282 (369)
311 KOG0082 G-protein alpha subuni 97.4 0.00059 1.3E-08 60.2 8.0 39 146-184 193-231 (354)
312 smart00053 DYNc Dynamin, GTPas 97.4 0.00091 2E-08 56.2 8.8 25 100-124 26-50 (240)
313 COG0532 InfB Translation initi 97.4 0.00072 1.6E-08 62.1 8.3 105 101-212 6-115 (509)
314 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.0002 4.4E-09 61.6 4.6 59 101-162 162-227 (287)
315 PRK09866 hypothetical protein; 97.4 0.0012 2.6E-08 62.4 9.8 64 148-213 230-299 (741)
316 KOG0462 Elongation factor-type 97.4 0.00098 2.1E-08 61.5 9.0 109 102-213 62-187 (650)
317 TIGR00157 ribosome small subun 97.4 0.00041 8.9E-09 58.4 6.2 51 159-212 24-76 (245)
318 TIGR00092 GTP-binding protein 97.3 0.00087 1.9E-08 59.6 7.9 82 101-182 3-108 (368)
319 KOG1486 GTP-binding protein DR 97.3 0.0011 2.4E-08 56.0 7.8 96 100-197 62-166 (364)
320 KOG1954 Endocytosis/signaling 97.3 0.0011 2.3E-08 58.7 8.0 99 101-201 59-211 (532)
321 PF03029 ATP_bind_1: Conserved 97.3 0.00019 4.2E-09 60.2 3.3 60 149-210 92-162 (238)
322 COG1217 TypA Predicted membran 97.2 0.0023 4.9E-08 58.2 9.2 110 101-213 6-130 (603)
323 COG4917 EutP Ethanolamine util 97.2 0.00021 4.5E-09 54.0 2.1 25 101-125 2-26 (148)
324 TIGR03597 GTPase_YqeH ribosome 97.2 0.00093 2E-08 59.4 6.5 55 101-160 155-216 (360)
325 PRK00098 GTPase RsgA; Reviewed 97.2 0.00058 1.2E-08 59.1 5.0 25 101-125 165-189 (298)
326 COG0012 Predicted GTPase, prob 97.2 0.0014 3E-08 58.0 7.3 83 100-182 2-108 (372)
327 KOG3859 Septins (P-loop GTPase 97.2 0.00076 1.6E-08 57.6 5.4 60 99-158 41-105 (406)
328 PRK13796 GTPase YqeH; Provisio 97.1 0.00082 1.8E-08 59.8 5.7 56 101-159 161-221 (365)
329 PTZ00327 eukaryotic translatio 97.1 0.0015 3.3E-08 59.9 7.3 89 96-184 30-153 (460)
330 KOG1491 Predicted GTP-binding 97.1 0.0017 3.6E-08 56.9 6.6 85 99-183 19-126 (391)
331 COG1162 Predicted GTPases [Gen 97.0 0.00058 1.3E-08 58.9 3.7 59 101-162 165-230 (301)
332 KOG1145 Mitochondrial translat 97.0 0.0028 6E-08 58.7 7.6 103 100-210 153-259 (683)
333 TIGR03348 VI_IcmF type VI secr 97.0 0.0023 5E-08 65.0 7.6 106 101-211 112-250 (1169)
334 PF03266 NTPase_1: NTPase; In 97.0 0.0013 2.9E-08 52.2 4.8 52 102-155 1-52 (168)
335 cd02042 ParA ParA and ParB of 96.8 0.0073 1.6E-07 43.3 7.2 83 103-196 2-85 (104)
336 COG1618 Predicted nucleotide k 96.7 0.0039 8.5E-08 49.2 5.8 55 100-156 5-59 (179)
337 COG0481 LepA Membrane GTPase L 96.6 0.0075 1.6E-07 55.1 7.6 96 104-199 13-127 (603)
338 KOG3887 Predicted small GTPase 96.6 0.0053 1.2E-07 51.6 5.7 82 101-184 28-114 (347)
339 cd00009 AAA The AAA+ (ATPases 96.6 0.012 2.5E-07 43.5 7.2 24 101-124 20-43 (151)
340 cd03222 ABC_RNaseL_inhibitor T 96.6 0.016 3.5E-07 46.4 8.4 98 101-210 26-128 (177)
341 PF13207 AAA_17: AAA domain; P 96.5 0.0023 5E-08 47.1 2.9 22 102-123 1-22 (121)
342 COG4108 PrfC Peptide chain rel 96.5 0.0037 8.1E-08 56.4 4.6 84 101-184 13-117 (528)
343 KOG1490 GTP-binding protein CR 96.4 0.0045 9.8E-08 56.7 4.8 112 100-213 168-291 (620)
344 cd02038 FleN-like FleN is a me 96.4 0.015 3.3E-07 44.4 7.0 104 104-213 4-107 (139)
345 PRK08118 topology modulation p 96.4 0.0029 6.3E-08 50.1 3.1 23 101-123 2-24 (167)
346 KOG0458 Elongation factor 1 al 96.4 0.043 9.4E-07 51.1 11.0 115 97-213 174-325 (603)
347 cd01983 Fer4_NifH The Fer4_Nif 96.4 0.037 8.1E-07 38.1 8.4 81 103-197 2-83 (99)
348 PF13671 AAA_33: AAA domain; P 96.3 0.0035 7.5E-08 47.4 2.9 19 103-121 2-20 (143)
349 PRK07261 topology modulation p 96.2 0.0038 8.3E-08 49.5 3.1 21 102-122 2-22 (171)
350 COG2895 CysN GTPases - Sulfate 96.2 0.035 7.7E-07 49.1 9.0 84 98-181 4-119 (431)
351 COG0563 Adk Adenylate kinase a 96.1 0.0046 9.9E-08 49.6 3.0 23 101-123 1-23 (178)
352 KOG0467 Translation elongation 96.1 0.018 3.9E-07 55.2 7.2 107 100-213 9-134 (887)
353 PF13521 AAA_28: AAA domain; P 96.1 0.0037 8.1E-08 48.8 2.2 22 102-123 1-22 (163)
354 KOG1532 GTPase XAB1, interacts 96.1 0.01 2.2E-07 50.8 4.8 25 98-122 17-41 (366)
355 KOG0099 G protein subunit Galp 96.0 0.027 5.9E-07 48.0 7.2 37 147-183 201-237 (379)
356 smart00382 AAA ATPases associa 96.0 0.0073 1.6E-07 44.1 3.3 26 101-126 3-28 (148)
357 PF00004 AAA: ATPase family as 95.9 0.0068 1.5E-07 44.8 3.0 21 103-123 1-21 (132)
358 PF07728 AAA_5: AAA domain (dy 95.9 0.0064 1.4E-07 46.0 2.7 21 102-122 1-21 (139)
359 KOG1424 Predicted GTP-binding 95.9 0.011 2.5E-07 54.2 4.7 56 100-158 314-369 (562)
360 TIGR00150 HI0065_YjeE ATPase, 95.9 0.02 4.4E-07 43.8 5.4 22 102-123 24-45 (133)
361 COG5192 BMS1 GTP-binding prote 95.8 0.015 3.3E-07 54.2 5.3 78 99-183 68-145 (1077)
362 PRK09435 membrane ATPase/prote 95.8 0.052 1.1E-06 47.8 8.4 22 100-121 56-77 (332)
363 cd03111 CpaE_like This protein 95.8 0.05 1.1E-06 39.6 6.9 98 105-211 5-105 (106)
364 PF13401 AAA_22: AAA domain; P 95.7 0.0083 1.8E-07 44.5 2.6 22 102-123 6-27 (131)
365 PF13191 AAA_16: AAA ATPase do 95.7 0.0079 1.7E-07 47.2 2.6 23 100-122 24-46 (185)
366 PRK06217 hypothetical protein; 95.7 0.01 2.2E-07 47.4 3.1 23 101-123 2-24 (183)
367 cd00071 GMPK Guanosine monopho 95.6 0.011 2.3E-07 45.3 3.0 21 103-123 2-22 (137)
368 PRK10078 ribose 1,5-bisphospho 95.6 0.011 2.3E-07 47.4 3.1 22 102-123 4-25 (186)
369 cd02019 NK Nucleoside/nucleoti 95.6 0.013 2.7E-07 39.4 2.9 21 103-123 2-22 (69)
370 PF05729 NACHT: NACHT domain 95.6 0.01 2.2E-07 45.5 2.8 21 103-123 3-23 (166)
371 PF00005 ABC_tran: ABC transpo 95.6 0.011 2.4E-07 44.4 2.9 22 102-123 13-34 (137)
372 PF13555 AAA_29: P-loop contai 95.6 0.015 3.2E-07 38.6 3.1 20 102-121 25-44 (62)
373 COG1126 GlnQ ABC-type polar am 95.6 0.012 2.7E-07 48.6 3.3 25 102-126 30-54 (240)
374 TIGR02322 phosphon_PhnN phosph 95.5 0.011 2.5E-07 46.6 3.0 22 102-123 3-24 (179)
375 KOG0066 eIF2-interacting prote 95.5 0.13 2.8E-06 47.1 9.8 102 100-202 613-752 (807)
376 COG1117 PstB ABC-type phosphat 95.5 0.024 5.1E-07 47.0 4.7 21 102-122 35-55 (253)
377 PF13238 AAA_18: AAA domain; P 95.5 0.012 2.6E-07 43.3 2.7 21 103-123 1-21 (129)
378 PRK14738 gmk guanylate kinase; 95.5 0.021 4.6E-07 46.6 4.5 25 99-123 12-36 (206)
379 TIGR03263 guanyl_kin guanylate 95.5 0.013 2.9E-07 46.2 3.1 22 102-123 3-24 (180)
380 COG3842 PotA ABC-type spermidi 95.5 0.023 5E-07 50.4 4.8 23 103-125 34-56 (352)
381 PRK14737 gmk guanylate kinase; 95.4 0.013 2.8E-07 47.2 3.1 23 101-123 5-27 (186)
382 PF13173 AAA_14: AAA domain 95.4 0.012 2.6E-07 44.2 2.7 24 102-125 4-27 (128)
383 TIGR00101 ureG urease accessor 95.4 0.015 3.3E-07 47.4 3.2 23 101-123 2-24 (199)
384 COG4615 PvdE ABC-type sideroph 95.4 0.0094 2E-07 53.5 2.1 82 103-199 352-433 (546)
385 PRK10646 ADP-binding protein; 95.3 0.053 1.1E-06 42.5 6.0 22 102-123 30-51 (153)
386 KOG0448 Mitofusin 1 GTPase, in 95.3 0.12 2.6E-06 49.2 9.2 101 98-199 107-259 (749)
387 COG1116 TauB ABC-type nitrate/ 95.3 0.015 3.3E-07 48.9 3.1 22 102-123 31-52 (248)
388 KOG0410 Predicted GTP binding 95.3 0.048 1E-06 47.8 6.1 97 101-198 179-284 (410)
389 COG1136 SalX ABC-type antimicr 95.2 0.014 3E-07 48.6 2.6 22 102-123 33-54 (226)
390 KOG1144 Translation initiation 95.2 0.042 9.1E-07 52.8 6.0 95 96-190 471-585 (1064)
391 cd00820 PEPCK_HprK Phosphoenol 95.2 0.019 4E-07 42.3 2.8 21 101-121 16-36 (107)
392 PRK14530 adenylate kinase; Pro 95.2 0.018 4E-07 47.1 3.1 21 101-121 4-24 (215)
393 TIGR02868 CydC thiol reductant 95.1 0.03 6.5E-07 52.0 4.8 23 101-123 362-384 (529)
394 COG3839 MalK ABC-type sugar tr 95.1 0.018 3.8E-07 50.8 3.1 22 103-124 32-53 (338)
395 PF02367 UPF0079: Uncharacteri 95.1 0.027 5.8E-07 42.5 3.6 22 102-123 17-38 (123)
396 TIGR01425 SRP54_euk signal rec 95.1 0.1 2.2E-06 47.6 7.9 22 100-121 100-121 (429)
397 PF03205 MobB: Molybdopterin g 95.1 0.018 4E-07 44.3 2.7 21 102-122 2-22 (140)
398 PF04665 Pox_A32: Poxvirus A32 95.1 0.02 4.3E-07 48.2 3.1 24 100-123 13-36 (241)
399 PRK00300 gmk guanylate kinase; 95.1 0.019 4.2E-07 46.3 3.0 23 101-123 6-28 (205)
400 COG4525 TauB ABC-type taurine 95.1 0.016 3.4E-07 47.5 2.4 21 102-122 33-53 (259)
401 PRK08233 hypothetical protein; 95.0 0.024 5.2E-07 44.6 3.4 22 101-122 4-25 (182)
402 COG0194 Gmk Guanylate kinase [ 95.0 0.021 4.5E-07 46.1 3.0 24 101-124 5-28 (191)
403 TIGR01360 aden_kin_iso1 adenyl 95.0 0.021 4.6E-07 45.1 3.0 20 102-121 5-24 (188)
404 PRK03839 putative kinase; Prov 95.0 0.022 4.7E-07 45.1 3.1 22 102-123 2-23 (180)
405 PRK13695 putative NTPase; Prov 95.0 0.022 4.8E-07 44.9 3.1 22 101-122 1-22 (174)
406 PRK05416 glmZ(sRNA)-inactivati 95.0 0.097 2.1E-06 45.2 7.2 74 102-200 8-83 (288)
407 COG0802 Predicted ATPase or ki 94.9 0.067 1.4E-06 41.7 5.4 22 102-123 27-48 (149)
408 cd02023 UMPK Uridine monophosp 94.9 0.023 5E-07 45.7 2.9 20 103-122 2-21 (198)
409 PF01637 Arch_ATPase: Archaeal 94.9 0.021 4.6E-07 46.1 2.7 24 101-124 21-44 (234)
410 PRK14532 adenylate kinase; Pro 94.9 0.025 5.4E-07 45.1 3.1 21 102-122 2-22 (188)
411 cd01129 PulE-GspE PulE/GspE Th 94.8 0.12 2.6E-06 44.0 7.2 85 102-191 82-168 (264)
412 cd01428 ADK Adenylate kinase ( 94.8 0.025 5.3E-07 45.0 2.9 22 102-123 1-22 (194)
413 PF00503 G-alpha: G-protein al 94.8 0.13 2.8E-06 46.1 7.7 65 146-210 234-309 (389)
414 PRK01889 GTPase RsgA; Reviewed 94.7 0.032 6.8E-07 49.6 3.7 24 101-124 196-219 (356)
415 KOG2486 Predicted GTPase [Gene 94.7 0.13 2.7E-06 44.3 7.0 72 98-172 134-217 (320)
416 PRK13949 shikimate kinase; Pro 94.7 0.029 6.3E-07 44.4 3.1 21 102-122 3-23 (169)
417 COG3638 ABC-type phosphate/pho 94.7 0.027 5.9E-07 47.2 3.0 21 102-122 32-52 (258)
418 PRK14531 adenylate kinase; Pro 94.7 0.029 6.4E-07 44.7 3.1 23 100-122 2-24 (183)
419 cd03238 ABC_UvrA The excision 94.7 0.03 6.6E-07 44.7 3.1 21 101-121 22-42 (176)
420 smart00072 GuKc Guanylate kina 94.7 0.03 6.6E-07 44.7 3.1 22 102-123 4-25 (184)
421 PRK02496 adk adenylate kinase; 94.6 0.032 6.9E-07 44.4 3.2 22 101-122 2-23 (184)
422 TIGR01313 therm_gnt_kin carboh 94.6 0.024 5.3E-07 44.0 2.4 21 103-123 1-21 (163)
423 TIGR00235 udk uridine kinase. 94.6 0.04 8.7E-07 44.8 3.8 23 100-122 6-28 (207)
424 PF00625 Guanylate_kin: Guanyl 94.6 0.03 6.5E-07 44.6 3.0 20 103-122 5-24 (183)
425 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.6 0.033 7.1E-07 45.4 3.2 22 102-123 32-53 (218)
426 TIGR03015 pepcterm_ATPase puta 94.6 0.029 6.3E-07 47.1 3.0 22 102-123 45-66 (269)
427 PRK10751 molybdopterin-guanine 94.6 0.03 6.6E-07 44.7 2.9 22 101-122 7-28 (173)
428 PRK15093 antimicrobial peptide 94.6 0.07 1.5E-06 46.8 5.5 23 102-124 35-57 (330)
429 PRK10418 nikD nickel transport 94.6 0.077 1.7E-06 44.5 5.5 23 102-124 31-53 (254)
430 PRK05480 uridine/cytidine kina 94.5 0.035 7.5E-07 45.1 3.2 24 99-122 5-28 (209)
431 PF13479 AAA_24: AAA domain 94.5 0.026 5.7E-07 46.3 2.5 22 99-120 2-23 (213)
432 TIGR01351 adk adenylate kinase 94.5 0.031 6.7E-07 45.6 2.9 21 102-122 1-21 (210)
433 cd01128 rho_factor Transcripti 94.5 0.036 7.8E-07 46.8 3.3 24 101-124 17-40 (249)
434 cd01130 VirB11-like_ATPase Typ 94.5 0.037 7.9E-07 44.3 3.2 23 101-123 26-48 (186)
435 TIGR01359 UMP_CMP_kin_fam UMP- 94.5 0.033 7.2E-07 44.0 2.9 20 103-122 2-21 (183)
436 TIGR00960 3a0501s02 Type II (G 94.5 0.037 8E-07 45.1 3.2 22 102-123 31-52 (216)
437 PTZ00088 adenylate kinase 1; P 94.5 0.035 7.6E-07 46.3 3.1 22 101-122 7-28 (229)
438 COG1120 FepC ABC-type cobalami 94.4 0.034 7.5E-07 47.2 3.0 21 102-122 30-50 (258)
439 cd01120 RecA-like_NTPases RecA 94.4 0.034 7.3E-07 42.2 2.8 21 103-123 2-22 (165)
440 TIGR02315 ABC_phnC phosphonate 94.4 0.039 8.5E-07 45.7 3.2 22 102-123 30-51 (243)
441 cd03226 ABC_cobalt_CbiO_domain 94.4 0.04 8.7E-07 44.5 3.2 22 102-123 28-49 (205)
442 PF00503 G-alpha: G-protein al 94.4 0.039 8.5E-07 49.4 3.4 25 97-121 55-79 (389)
443 cd03225 ABC_cobalt_CbiO_domain 94.3 0.041 8.9E-07 44.6 3.3 22 102-123 29-50 (211)
444 KOG1487 GTP-binding protein DR 94.3 0.19 4.2E-06 42.9 7.2 86 100-191 59-156 (358)
445 TIGR03797 NHPM_micro_ABC2 NHPM 94.3 0.065 1.4E-06 51.4 5.1 22 102-123 481-502 (686)
446 PF00910 RNA_helicase: RNA hel 94.3 0.035 7.5E-07 40.5 2.5 21 103-123 1-21 (107)
447 PHA00729 NTP-binding motif con 94.3 0.04 8.7E-07 45.9 3.1 23 101-123 18-40 (226)
448 KOG2485 Conserved ATP/GTP bind 94.3 0.059 1.3E-06 46.8 4.2 60 99-159 142-207 (335)
449 PRK05057 aroK shikimate kinase 94.3 0.041 8.8E-07 43.6 3.0 22 101-122 5-26 (172)
450 TIGR03608 L_ocin_972_ABC putat 94.3 0.044 9.4E-07 44.2 3.3 22 102-123 26-47 (206)
451 COG1419 FlhF Flagellar GTP-bin 94.3 0.15 3.3E-06 45.9 6.9 98 100-199 203-337 (407)
452 cd03264 ABC_drug_resistance_li 94.3 0.041 8.8E-07 44.7 3.1 22 102-123 27-48 (211)
453 PF00448 SRP54: SRP54-type pro 94.2 0.037 8.1E-07 45.0 2.8 21 101-121 2-22 (196)
454 TIGR01166 cbiO cobalt transpor 94.2 0.042 9.2E-07 43.9 3.1 22 102-123 20-41 (190)
455 PLN02165 adenylate isopentenyl 94.2 0.09 1.9E-06 46.3 5.3 23 101-123 44-66 (334)
456 PRK13851 type IV secretion sys 94.2 0.27 5.9E-06 43.5 8.4 24 100-123 162-185 (344)
457 cd01131 PilT Pilus retraction 94.2 0.13 2.8E-06 41.7 5.9 21 103-123 4-24 (198)
458 cd03269 ABC_putative_ATPase Th 94.2 0.046 9.9E-07 44.4 3.3 22 102-123 28-49 (210)
459 TIGR00073 hypB hydrogenase acc 94.2 0.043 9.2E-07 44.7 3.1 24 100-123 22-45 (207)
460 cd03292 ABC_FtsE_transporter F 94.2 0.046 9.9E-07 44.4 3.3 22 102-123 29-50 (214)
461 cd03262 ABC_HisP_GlnQ_permease 94.2 0.046 1E-06 44.3 3.3 22 102-123 28-49 (213)
462 COG1125 OpuBA ABC-type proline 94.2 0.077 1.7E-06 45.2 4.5 19 103-121 30-48 (309)
463 cd03261 ABC_Org_Solvent_Resist 94.2 0.046 1E-06 45.2 3.2 22 102-123 28-49 (235)
464 TIGR02673 FtsE cell division A 94.2 0.047 1E-06 44.3 3.2 22 102-123 30-51 (214)
465 cd03224 ABC_TM1139_LivF_branch 94.2 0.046 1E-06 44.6 3.2 23 101-123 27-49 (222)
466 cd03265 ABC_DrrA DrrA is the A 94.1 0.048 1E-06 44.6 3.3 23 101-123 27-49 (220)
467 cd03293 ABC_NrtD_SsuB_transpor 94.1 0.048 1E-06 44.6 3.3 22 102-123 32-53 (220)
468 cd03259 ABC_Carb_Solutes_like 94.1 0.049 1.1E-06 44.3 3.3 22 102-123 28-49 (213)
469 PRK11176 lipid transporter ATP 94.1 0.071 1.5E-06 50.0 4.8 23 101-123 370-392 (582)
470 cd02021 GntK Gluconate kinase 94.1 0.047 1E-06 41.7 3.0 21 103-123 2-22 (150)
471 TIGR01526 nadR_NMN_Atrans nico 94.1 0.044 9.6E-07 48.0 3.2 23 100-122 162-184 (325)
472 cd03260 ABC_PstB_phosphate_tra 94.1 0.049 1.1E-06 44.8 3.2 23 102-124 28-50 (227)
473 PRK14528 adenylate kinase; Pro 94.1 0.048 1E-06 43.8 3.1 21 101-121 2-22 (186)
474 TIGR02211 LolD_lipo_ex lipopro 94.1 0.05 1.1E-06 44.4 3.3 22 102-123 33-54 (221)
475 cd03256 ABC_PhnC_transporter A 94.0 0.048 1E-06 45.1 3.1 22 102-123 29-50 (241)
476 cd03229 ABC_Class3 This class 94.0 0.051 1.1E-06 43.1 3.1 22 102-123 28-49 (178)
477 cd03266 ABC_NatA_sodium_export 94.0 0.052 1.1E-06 44.3 3.2 22 102-123 33-54 (218)
478 PRK11174 cysteine/glutathione 94.0 0.082 1.8E-06 49.7 5.0 23 101-123 377-399 (588)
479 PRK11629 lolD lipoprotein tran 94.0 0.052 1.1E-06 44.9 3.3 22 102-123 37-58 (233)
480 cd03218 ABC_YhbG The ABC trans 94.0 0.052 1.1E-06 44.7 3.3 22 102-123 28-49 (232)
481 cd03257 ABC_NikE_OppD_transpor 94.0 0.051 1.1E-06 44.5 3.2 22 102-123 33-54 (228)
482 PRK06547 hypothetical protein; 94.0 0.058 1.3E-06 42.9 3.4 23 100-122 15-37 (172)
483 cd03258 ABC_MetN_methionine_tr 94.0 0.05 1.1E-06 44.9 3.1 23 101-123 32-54 (233)
484 PRK13540 cytochrome c biogenes 94.0 0.055 1.2E-06 43.7 3.3 24 101-124 28-51 (200)
485 cd03263 ABC_subfamily_A The AB 94.0 0.051 1.1E-06 44.4 3.1 22 102-123 30-51 (220)
486 TIGR00176 mobB molybdopterin-g 94.0 0.051 1.1E-06 42.5 2.9 20 103-122 2-21 (155)
487 cd01672 TMPK Thymidine monopho 94.0 0.049 1.1E-06 43.1 2.9 20 103-122 3-22 (200)
488 cd03216 ABC_Carb_Monos_I This 94.0 0.058 1.3E-06 42.2 3.3 86 102-198 28-129 (163)
489 PRK13541 cytochrome c biogenes 94.0 0.055 1.2E-06 43.5 3.2 23 102-124 28-50 (195)
490 cd03301 ABC_MalK_N The N-termi 94.0 0.056 1.2E-06 43.9 3.3 23 102-124 28-50 (213)
491 cd00227 CPT Chloramphenicol (C 93.9 0.05 1.1E-06 43.0 2.9 22 102-123 4-25 (175)
492 cd03219 ABC_Mj1267_LivG_branch 93.9 0.052 1.1E-06 44.8 3.1 22 102-123 28-49 (236)
493 cd01124 KaiC KaiC is a circadi 93.9 0.053 1.1E-06 42.8 3.0 21 103-123 2-22 (187)
494 TIGR03796 NHPM_micro_ABC1 NHPM 93.9 0.082 1.8E-06 51.0 4.9 22 102-123 507-528 (710)
495 PRK06762 hypothetical protein; 93.9 0.052 1.1E-06 42.3 2.9 23 101-123 3-25 (166)
496 cd03268 ABC_BcrA_bacitracin_re 93.9 0.053 1.2E-06 43.9 3.1 22 102-123 28-49 (208)
497 PRK00279 adk adenylate kinase; 93.9 0.053 1.1E-06 44.4 3.1 21 102-122 2-22 (215)
498 cd02025 PanK Pantothenate kina 93.9 0.047 1E-06 45.1 2.8 20 103-122 2-21 (220)
499 PRK11248 tauB taurine transpor 93.9 0.055 1.2E-06 45.6 3.2 24 101-124 28-51 (255)
500 PRK08099 bifunctional DNA-bind 93.9 0.051 1.1E-06 49.0 3.2 26 98-123 217-242 (399)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-34 Score=229.69 Aligned_cols=114 Identities=23% Similarity=0.473 Sum_probs=110.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..|||+++||+|||||||+.||.++.|. .+..|+|.||..+.+.++|+.++++||||+|||+|+.+...||++|+|+|+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 3899999999999999999999999999 888899999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|||+|+++||+++..|+++++++..+++|++||+.
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGN 122 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGN 122 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEee
Confidence 99999999999999999999999999999998864
No 2
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.9e-32 Score=213.74 Aligned_cols=119 Identities=19% Similarity=0.451 Sum_probs=109.5
Q ss_pred CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccC
Q 028037 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD 171 (215)
Q Consensus 93 ~~~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ 171 (215)
........+|++++||.+|||||||.||+.+.|. .|.+|+|+||-.+++.+.+..+.|++|||+|||+|+.+.+.|+++
T Consensus 15 ~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rd 94 (221)
T KOG0094|consen 15 TFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 94 (221)
T ss_pred ccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccC
Confidence 4445566799999999999999999999999999 888999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCC-CceEEEEe
Q 028037 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQV-TKQSLFFH 211 (215)
Q Consensus 172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~-~~piIlVa 211 (215)
+.++|+|||++|++||++..+|++++++..+. ++-|+||.
T Consensus 95 s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVG 135 (221)
T KOG0094|consen 95 SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVG 135 (221)
T ss_pred CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEc
Confidence 99999999999999999999999999998765 45555553
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-30 Score=205.82 Aligned_cols=114 Identities=25% Similarity=0.465 Sum_probs=107.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~-~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+|++++|+.+||||||+.||..+.|.+ ..+|+|..|.++++.+++..++|+||||+|||+|..+.++||++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 357999999999999999999999999995 4789999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+|+.+||..++.|++++++..++++.|.||.
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvG 117 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVG 117 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 99999999999999999999999988777776664
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-30 Score=206.95 Aligned_cols=115 Identities=21% Similarity=0.432 Sum_probs=110.6
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
....+||+++||++||||+|+.+|.++.|. .+..|+|+||..+++.+++..+.+++|||+|||+|..+...||++|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 344799999999999999999999999999 8888999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++|||++++.||+++..|+..|+++.++++|++||.
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvG 124 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVG 124 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEee
Confidence 999999999999999999999999998899999885
No 5
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8e-30 Score=204.82 Aligned_cols=114 Identities=25% Similarity=0.469 Sum_probs=110.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..|||+++||++||||-|+.||..++|. +..+|+|.++.+..+.++++.++.+||||+|||+|+.+...||++|.|.++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 3799999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|||+|.+.||+++.+|+.+++.+.+++++|+||..
T Consensus 93 VYDITr~~Tfenv~rWL~ELRdhad~nivimLvGN 127 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRDHADSNIVIMLVGN 127 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeec
Confidence 99999999999999999999999999999999863
No 6
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.1e-29 Score=196.25 Aligned_cols=114 Identities=25% Similarity=0.480 Sum_probs=104.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccc-cceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+.+|..+.|.+..+ |+|.||..+.+.++|..+++.||||+|||+|+.+.+.||++|.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 347999999999999999999999999995555 6999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
+|||+|.++||.++..|++++..++. +++..++|+
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVg 124 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVG 124 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhc
Confidence 99999999999999999999999985 555555554
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-29 Score=199.81 Aligned_cols=114 Identities=18% Similarity=0.413 Sum_probs=109.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+|++++||.|||||+|+.||++..|. .+..|+|++|..+.+.+++++++|+||||+|||.|+.+...||+++.|.||
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 4799999999999999999999999999 777899999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|||+++++||+.+..|+.+++++..+|+.|+|++.
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGN 119 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHSNENMVIMLIGN 119 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 99999999999999999999999888999888763
No 8
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=5.7e-30 Score=195.36 Aligned_cols=111 Identities=19% Similarity=0.465 Sum_probs=105.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+|.+++||+|||||||+.+|.++.|. .|..|+|.|+..+++.++|..++|+|||++|||+|+.+...||++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 478999999999999999999999999 8888999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
||+||.+||.++++|+++++.+++ .+|-+||.
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVG 119 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVG 119 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCc-cccceecc
Confidence 999999999999999999999994 68877764
No 9
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=1.9e-28 Score=193.13 Aligned_cols=114 Identities=21% Similarity=0.361 Sum_probs=106.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++||+|||||||+++|.+.+|. .+..|+|.+|..+.+.+++..+.++||||+|||+|..+.-.+|+++|+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 34699999999999999999999999999 88889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCC----CCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQ----VTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~----~~~piIlVa 211 (215)
+|||+++++||+++..|.+++..+.. +..|.||+.
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilG 125 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILG 125 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEc
Confidence 99999999999999999999977664 468877764
No 10
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.1e-28 Score=183.71 Aligned_cols=117 Identities=23% Similarity=0.496 Sum_probs=110.3
Q ss_pred CCCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCC
Q 028037 94 TDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA 172 (215)
Q Consensus 94 ~~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a 172 (215)
...++ .+|++++|++.||||||+.||.++.|. .+..|.|++|..+++.-..+.++++||||+|||+|+.+...||+++
T Consensus 16 qnFDy-mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 16 QNFDY-MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred ccccc-eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 34445 569999999999999999999999999 8999999999999998889999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 173 ~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+++|+|||++|.+||+.++.|..+|+.++-.++|+|||.
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvg 133 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVG 133 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEe
Confidence 999999999999999999999999999998999999885
No 11
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.95 E-value=1.1e-27 Score=195.92 Aligned_cols=112 Identities=21% Similarity=0.431 Sum_probs=105.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+.|+++|+.|||||||+++|.++.|. ++.+|+|.++..+.+.+++..++++||||+|+++|..++..||+++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46999999999999999999999998 67789999999999999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|++|++||++++.|++.+++....++|+|||+.
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgN 113 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGN 113 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 999999999999999999888767899988874
No 12
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.2e-28 Score=186.20 Aligned_cols=112 Identities=21% Similarity=0.445 Sum_probs=106.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|..|||||+|+.+|..+-|+ ....|+|.+|+.+++.++|.+++++||||+|||+|+.+.+.||+.|+++|++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 689999999999999999999999999 7778999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
||++...||+-+.+|+.+|.++...++-.|||.
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvg 119 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVG 119 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeec
Confidence 999999999999999999999997776666664
No 13
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.9e-28 Score=187.06 Aligned_cols=112 Identities=21% Similarity=0.442 Sum_probs=107.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+|++++|+.|.|||+|+++|+.++|. +...|+|.+|.++.+.+.++.++++||||+|||+|+...+.||++|.+.++|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 689999999999999999999999999 6667999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
||+++++||+.+..|+.+++...++++.|||+.
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~G 121 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTLASPNIVVILCG 121 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeC
Confidence 999999999999999999999998999888874
No 14
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=8e-27 Score=186.93 Aligned_cols=109 Identities=21% Similarity=0.425 Sum_probs=100.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+.+|+++.|. ++.+|++.++ .+.+.+++..++++||||+|+++|..++..++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 69999999999999999999999999 7888888766 466788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhHCCCCceEEEEe
Q 028037 180 DLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 180 dit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa 211 (215)
|+++++||+++ +.|++++++.. +++|++||+
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvg 112 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVG 112 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence 99999999999 68999998876 579999987
No 15
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.95 E-value=7e-27 Score=188.20 Aligned_cols=112 Identities=25% Similarity=0.415 Sum_probs=102.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||+.+|.++.|. ++.+|++.++ .+.+.+++..++++||||+|+++|..+++.+|+++|++|+
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 4789999999999999999999999998 7778888666 4678889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEee
Q 028037 178 MFDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|||+++++||+++ ..|+++++++. ++.|++||+.
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgN 117 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGC 117 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeE
Confidence 9999999999998 79999999887 5789888864
No 16
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.95 E-value=7.3e-27 Score=189.21 Aligned_cols=112 Identities=21% Similarity=0.422 Sum_probs=105.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|+.|||||||+.+|.++.|. ++.++.+.++..+.+.+++..+.+++||++|+++|..++..|++++|++|+|
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illV 85 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILV 85 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 599999999999999999999999998 6667889999888899999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
||+++++||+++..|++++.++. +++|+|||+.
T Consensus 86 fD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGN 118 (189)
T cd04121 86 YDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGN 118 (189)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 99999999999999999998876 5799999874
No 17
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=1.2e-26 Score=186.69 Aligned_cols=112 Identities=51% Similarity=0.864 Sum_probs=104.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|+++.|. ++.+|+|.++..+.+.+++..+.++|||++|+++|..+++.+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999 78899999998889999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|++|++||+++..|++++++..+.+.|+++.+|
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK 113 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIPILVGTK 113 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 999999999999999999887766788776665
No 18
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=1.1e-26 Score=186.32 Aligned_cols=111 Identities=24% Similarity=0.411 Sum_probs=101.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
++||+++|++|||||||+++|.++.|. ++.+|++.++ .+.+.+++..++++||||+|+++|..+.+.+|+++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999999999999 7778888776 46788899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa~ 212 (215)
||+++++||+++ ..|++++++++ +++|++||+-
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgn 113 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGC 113 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEE
Confidence 999999999996 79999999887 5788888863
No 19
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.94 E-value=1.4e-26 Score=187.28 Aligned_cols=112 Identities=18% Similarity=0.322 Sum_probs=101.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||+.+|..+.|. ++.+|++.++ .+.+.+++..+.++||||+|+++|..+++.||+++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 4589999999999999999999999998 7778888665 4556789999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~ 212 (215)
|||++|++||+++. .|++++.+.. +++|++||+.
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgN 115 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGT 115 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEe
Confidence 99999999999997 6999998765 5799988874
No 20
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.94 E-value=2.3e-26 Score=188.19 Aligned_cols=112 Identities=21% Similarity=0.308 Sum_probs=101.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-----CeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-----GARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-----~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ 174 (215)
+||+++|++|||||||+++|+++.|. ++.+|+|.++..+.+.++ +..+.++|||++|+++|..+++.||+++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999998 777899988888877774 578999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhH-------------------CCCCceEEEEee
Q 028037 175 ILFMFDLTSRCTLNSIVGWYSEARKW-------------------NQVTKQSLFFHI 212 (215)
Q Consensus 175 iilvfdit~~~Sf~~i~~wl~~i~~~-------------------~~~~~piIlVa~ 212 (215)
+|+|||+++++||+++..|++++.+. .+.++|+|||+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGn 137 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGT 137 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEE
Confidence 99999999999999999999999764 235799999874
No 21
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=5.8e-26 Score=189.38 Aligned_cols=113 Identities=23% Similarity=0.367 Sum_probs=102.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+.+|+++.|. ++.+|++.++. +.+.+++..+.++||||+|+++|..+.+.||+++|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 45799999999999999999999999999 78889887764 56888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+|||+++++||+++ ..|++++++.. +++|+|||+.
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgN 125 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGC 125 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 99999999999985 79999999876 5688887763
No 22
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=1.6e-26 Score=178.38 Aligned_cols=116 Identities=28% Similarity=0.461 Sum_probs=108.8
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
...+||++++|..-||||||+-||++++|. ....|....|..+.+.+++....+.||||+|||+|..+-+.||+++++.
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 345899999999999999999999999999 7778999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
++|||+||++||+.++.|..++++..+..+-++||..
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGN 126 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGN 126 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecC
Confidence 9999999999999999999999999887788777753
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.93 E-value=1.5e-25 Score=176.27 Aligned_cols=113 Identities=21% Similarity=0.436 Sum_probs=104.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+++|.+++|. .+.+|++.++..+.+.+++..+++++||++|+++|..++..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 489999999999999999999999998 6667889999888888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
||+++++||+++..|+++++....++.|++||+.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~n 115 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGN 115 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 9999999999999999999887767788888764
No 24
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.93 E-value=2.1e-25 Score=178.11 Aligned_cols=110 Identities=19% Similarity=0.334 Sum_probs=99.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|.++.|. ++.+|++.++. ..+.+++..++++||||+|+++|..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999997 78888887664 55778899999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~ 212 (215)
|+++++||+++. .|++++++.. +++|+|||+.
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgn 113 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGT 113 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 999999999997 6999998765 5789988864
No 25
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.93 E-value=1.2e-25 Score=175.50 Aligned_cols=111 Identities=23% Similarity=0.463 Sum_probs=105.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd 180 (215)
||+++|+.+||||||+++|.++.|. .+.+|.|.++..+.+.+++..+.++|||++|+++|..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999 788899999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 181 LTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+++++||+++..|++++....+.+.|++||+.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~ 112 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGN 112 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEE
T ss_pred ccccccccccccccccccccccccccceeeec
Confidence 99999999999999999999876799999864
No 26
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.93 E-value=2.7e-25 Score=174.64 Aligned_cols=112 Identities=23% Similarity=0.501 Sum_probs=104.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|.+++|. .+.+|.+.++..+.+.+++..+++++||++|+++|..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998 67889999998888999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|+++++||+++..|++++......++|+++|+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgn 113 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGN 113 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 999999999999999999888766899988874
No 27
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.93 E-value=1.6e-25 Score=185.65 Aligned_cols=111 Identities=23% Similarity=0.416 Sum_probs=100.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+.+|.++.|. ++.||++.++. ..+.+++..+.|+||||+|+++|..+++.+|+++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999999 78889887764 6778899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa~ 212 (215)
||+++++||+++ ..|..+++... +++|+|||+-
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgn 113 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGC 113 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEE
Confidence 999999999999 47888887766 6799988863
No 28
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=3.8e-25 Score=182.86 Aligned_cols=114 Identities=21% Similarity=0.312 Sum_probs=105.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|+.++|. .+.+|+|.++....+..++..+++++|||+|+++|..++..||++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 55799999999999999999999999998 78889999998888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+|||+++++||+++..|++++.+.. .++|++||+.
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgN 125 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGN 125 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEE
Confidence 9999999999999999999998876 5789888863
No 29
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=2.6e-26 Score=177.99 Aligned_cols=112 Identities=21% Similarity=0.463 Sum_probs=102.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEE-CCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
..++++++||+-||||||++.|.+++|. -..||+|.||+.+.+.+ +|..++|++|||+|||+|+.+...||+++.+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 3689999999999999999999999999 66789999999998888 589999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEE
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFF 210 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlV 210 (215)
+|||++|++||+.++.|+.+...+-+ ++.++.++
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlL 121 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLL 121 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEE
Confidence 99999999999999999999988765 55555443
No 30
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=4.3e-25 Score=179.65 Aligned_cols=112 Identities=21% Similarity=0.401 Sum_probs=102.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
+||+++|++|||||||+++|+++.|. .+.+|+|.++..+.+.++ +..+.+++|||+|+++|..+++.+|++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 69999999999999999999999998 778899999988888888 8899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC----CCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWN----QVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~----~~~~piIlVa~ 212 (215)
||+++++||+++..|++++.... ..++|+|||+.
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~N 118 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLAN 118 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEE
Confidence 99999999999999999997642 35789888763
No 31
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.93 E-value=5e-25 Score=175.00 Aligned_cols=111 Identities=22% Similarity=0.395 Sum_probs=101.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd 180 (215)
||+++|++|||||||+++|+++.|. ++.+|++.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 8999999999999999999999999 788899999988888999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 181 LTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
+++++||+++..|++++.+.. +.+.|+++|+.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgn 114 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGT 114 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 999999999999999987654 44678777653
No 32
>PLN00023 GTP-binding protein; Provisional
Probab=99.93 E-value=5.5e-25 Score=190.08 Aligned_cols=118 Identities=22% Similarity=0.321 Sum_probs=104.9
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECC-------------eEEEEEEEecCCCCC
Q 028037 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-------------ARIAFSIWDVGGDSR 160 (215)
Q Consensus 95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~-------------~~~~l~i~Dt~G~e~ 160 (215)
......+||+++|+.|||||||+++|+++.|. .+.+|+|.++..+.+.+++ ..+.++||||+|+++
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 33555799999999999999999999999998 7778999999888887752 568999999999999
Q ss_pred CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC------------CCceEEEEee
Q 028037 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ------------VTKQSLFFHI 212 (215)
Q Consensus 161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~------------~~~piIlVa~ 212 (215)
|..+++.||++++++|+|||+++++||+++..|++++.+... .++|++||+.
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN 159 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN 159 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence 999999999999999999999999999999999999987631 3588888874
No 33
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.93 E-value=8.4e-26 Score=182.17 Aligned_cols=111 Identities=17% Similarity=0.355 Sum_probs=103.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
..+|+++|||++||||+|+..|..+.|+ +|.||+- |-+...+.++ |+.+.+.+|||+|||+|+.+++..|.++|+||
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 4689999999999999999999999999 7777776 5566788995 99999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa 211 (215)
+||++.+++||++++ +|++++++++ +++|+|||+
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVG 116 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVG 116 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEe
Confidence 999999999999996 8999999999 889999997
No 34
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.92 E-value=9.3e-25 Score=170.46 Aligned_cols=112 Identities=17% Similarity=0.358 Sum_probs=103.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|++++|. .+.++.+.++..+.+.+++..+.+++|||+|++++..+++.+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998 78889999998889999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCC-----CCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQ-----VTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~-----~~~piIlVa~ 212 (215)
|+++++||+.+..|+.++.++.. .+.|+++|+.
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 118 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCAN 118 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEE
Confidence 99999999999999999988764 4688888763
No 35
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=5.1e-27 Score=176.62 Aligned_cols=107 Identities=21% Similarity=0.487 Sum_probs=99.9
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037 104 SLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (215)
Q Consensus 104 vllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi 181 (215)
+++||+++|||+|+.||.++.|- ...+|+|+||..+.+.+++.+++++||||+|||+|+.....||+++|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47999999999999999999998 5678999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037 182 TSRCTLNSIVGWYSEARKWNQVTKQSLFF 210 (215)
Q Consensus 182 t~~~Sf~~i~~wl~~i~~~~~~~~piIlV 210 (215)
+|+.||++++.|+.+|.++.++.+.+.|+
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~ll 109 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLL 109 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhh
Confidence 99999999999999999998776655544
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.92 E-value=1.1e-24 Score=171.43 Aligned_cols=112 Identities=21% Similarity=0.499 Sum_probs=103.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|.+++|. .+.+|.|.++....+..++..+.+++||++|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998 77889998888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|+++++||+++..|++++.+....+.|+++|+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~n 114 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGN 114 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEE
Confidence 999999999999999999887766788888764
No 37
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.92 E-value=1.4e-24 Score=170.49 Aligned_cols=113 Identities=20% Similarity=0.469 Sum_probs=105.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+++|.++.|. .+.++.+.++..+.+.+++..+++++||++|+++|..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 489999999999999999999999998 7778889899888899999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
||++|++||+++..|++++.+...++.|+++|+.
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~n 115 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 115 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence 9999999999999999999888766789888874
No 38
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.92 E-value=1.1e-24 Score=171.60 Aligned_cols=113 Identities=19% Similarity=0.457 Sum_probs=105.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+++|.++.|. .+.++.+.++..+.+.+++..+.+++||++|++++..++..+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 589999999999999999999999999 7788999998888888999899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
||+++++||+++..|++++.+....++|+++|+.
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~n 116 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGN 116 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence 9999999999999999999987767889888763
No 39
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.92 E-value=1.6e-24 Score=172.77 Aligned_cols=111 Identities=21% Similarity=0.433 Sum_probs=99.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+.+|.++.|. ++.+|.+ +.+.+.+.+++..++++||||+|+++|..+++.+++++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 379999999999999999999999998 7777776 44456677889999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~ 212 (215)
||+++++||+++. .|++.+.... +++|++||+.
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgn 113 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGT 113 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEee
Confidence 9999999999996 6999998765 5799999864
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.92 E-value=1.7e-24 Score=168.84 Aligned_cols=112 Identities=15% Similarity=0.254 Sum_probs=99.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+++|+++.|. .+.+|++ +.+.+.+.+++..+.++||||+|+++|..++..|++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 379999999999999999999999998 6666776 55567788899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
||+++++||+++..|++++.+... .++|++||+.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGN 114 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 999999999999999999987643 5789887763
No 41
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.92 E-value=1.8e-24 Score=172.15 Aligned_cols=112 Identities=10% Similarity=0.138 Sum_probs=100.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+++|.+++|. .+.+|++..+ .+.+.+++..+.++||||+|+++|..++..+++++|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 479999999999999999999999998 6777888655 45678899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
||++|++||+++..|+..+.+.. ..++|++||+.
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgN 115 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGN 115 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 99999999999999999988754 36799888864
No 42
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.92 E-value=3.3e-24 Score=169.47 Aligned_cols=111 Identities=23% Similarity=0.365 Sum_probs=102.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|+++.|. .+.+|.+.++....+..++..+.+.+|||+|++++..++..++.++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 59999999999999999999999988 77889998988888888888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|+++++||+++..|+.++.+... ++|+++|+-
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~n 112 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGN 112 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEE
Confidence 99999999999999999998874 799888763
No 43
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.92 E-value=3.5e-24 Score=168.16 Aligned_cols=111 Identities=26% Similarity=0.473 Sum_probs=101.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|.+++|. .+.++.+.+++.+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998 66667788888788888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|++++.||+++..|++++++.. +++|+++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~n 112 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVAN 112 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEE
Confidence 9999999999999999998765 5688877764
No 44
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=2.7e-24 Score=172.80 Aligned_cols=112 Identities=20% Similarity=0.413 Sum_probs=104.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|.++.|. .+.+|.|.++..+.+.+++..+.+++||++|+++|..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998 68889999988888899988999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|+++++||+++..|++++.+....+.|+++|+.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~n 113 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVAN 113 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 999999999999999999988766788877764
No 45
>PTZ00369 Ras-like protein; Provisional
Probab=99.92 E-value=3.6e-24 Score=172.63 Aligned_cols=114 Identities=12% Similarity=0.205 Sum_probs=102.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.|. .+.+|.+.++ .+.+.+++..+.+++|||+|+++|..++..|++++|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 34699999999999999999999999998 6667777665 577888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
+|||+++++||+++..|++++.+.. ..++|++||+.
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 118 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGN 118 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 9999999999999999999998764 35789887763
No 46
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.92 E-value=3.9e-24 Score=167.31 Aligned_cols=112 Identities=14% Similarity=0.225 Sum_probs=99.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
++||+++|++|||||||+++|+++.|. .+.+|.+ +++...+.+++..+.++||||+|+++|..++..|++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 479999999999999999999999998 5555554 66667888899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
||++|++||+++..|+.++.+... .++|++||+.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~n 114 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGN 114 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 999999999999999999987643 6789887753
No 47
>PLN03110 Rab GTPase; Provisional
Probab=99.92 E-value=5.5e-24 Score=175.45 Aligned_cols=114 Identities=26% Similarity=0.464 Sum_probs=106.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||+++|.++.|. ++.+|+|.++..+.+.+++..++++|||++|+++|..++..++++++++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 3689999999999999999999999998 788899999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|||+++++||+++..|+..+++....++|+++|+.
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~n 125 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGN 125 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999999999999999988777899888764
No 48
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=4.3e-24 Score=167.70 Aligned_cols=113 Identities=27% Similarity=0.478 Sum_probs=103.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|+|||||+++|.++.|. .+.++.+.++..+.+.+++..+.+++||++|++++..++..+++++|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 689999999999999999999999998 6677888888888888999889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
||+++++||+++..|++++......++|+++|+.
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n 116 (165)
T cd01864 83 YDITRRSSFESVPHWIEEVEKYGASNVVLLLIGN 116 (165)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence 9999999999999999999887667788877763
No 49
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.92 E-value=6.5e-24 Score=167.29 Aligned_cols=113 Identities=24% Similarity=0.428 Sum_probs=103.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|+++||||||+++|.++.|. .+.++.|.++..+.+.+++..+.++|||++|++++..++..+++++|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 4699999999999999999999999998 677888999888888999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC----CCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQ----VTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~----~~~piIlVa 211 (215)
|||+++++||+.+..|+.++.+... .++|++||+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~ 121 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLG 121 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 9999999999999999999877542 468987775
No 50
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.91 E-value=5.7e-24 Score=166.68 Aligned_cols=112 Identities=24% Similarity=0.487 Sum_probs=104.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|+++||||||+++|.+++|. .+.++.+.++..+.+..++..+.+++||++|++++..++..++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 489999999999999999999999998 7888999999889999999889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
||+++++||+++..|++++.+....+.|++||+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~ 115 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVG 115 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 999999999999999999998876679988765
No 51
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.91 E-value=3.6e-24 Score=174.90 Aligned_cols=106 Identities=21% Similarity=0.333 Sum_probs=99.6
Q ss_pred EcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037 106 LGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 106 lGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~ 184 (215)
+|++|||||||+++|+++.|. .+.+|+|.++..+.+.+++..++++||||+|+++|..++..||+++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999999998 7788999999989889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 185 CTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 185 ~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+||+++..|++++++.+ .++|++||+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgN 107 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGN 107 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 99999999999999876 5799988874
No 52
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.91 E-value=6.3e-24 Score=165.78 Aligned_cols=112 Identities=23% Similarity=0.458 Sum_probs=104.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||++++.++++. .+.++.+.++....+.+++..+.+++||++|+++|..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 59999999999999999999999998 77778898888888899998999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|+++++||+++..|+++++....+++|++||+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~n 113 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGN 113 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 999999999999999999887778899888763
No 53
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.91 E-value=5.8e-24 Score=172.95 Aligned_cols=112 Identities=18% Similarity=0.411 Sum_probs=103.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+++|.++.|. .+.+|.+.++..+.+.+++..+.++|||++|++.|..++..++++++++++|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 689999999999999999999999998 7788999999888888899899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
||+++++||+.+..|++++.... ...|++||+.
T Consensus 86 ~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgN 118 (199)
T cd04110 86 YDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGN 118 (199)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 99999999999999999998766 5678776653
No 54
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=7.5e-24 Score=170.85 Aligned_cols=110 Identities=22% Similarity=0.346 Sum_probs=98.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
.||+++|++|||||||+++|.++.|. .+.+|.+.++. ..+.+++..+.++|||++|+++|..++..+++++|++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999998 67778877654 56777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~ 212 (215)
|+++++||+++. .|++++.... +++|++||+.
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgN 112 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVAL 112 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 999999999997 6999998766 5789888864
No 55
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.91 E-value=4.5e-24 Score=169.68 Aligned_cols=113 Identities=26% Similarity=0.491 Sum_probs=101.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC----------CeEEEEEEEecCCCCCCCccchhh
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ----------GARIAFSIWDVGGDSRSFDHVPIA 168 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~----------~~~~~l~i~Dt~G~e~~~~~~~~~ 168 (215)
.+||+++|++|||||||+++|.++.|. .+.+|++.++..+.+.++ +..+.++|||++|+++|..++..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF 83 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence 589999999999999999999999999 778899999887777664 467999999999999999999999
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 169 ~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
++++|++++|||+++++||+++..|++++.... ..+.|++||+.
T Consensus 84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 128 (180)
T cd04127 84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGN 128 (180)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEe
Confidence 999999999999999999999999999998764 35788888764
No 56
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.91 E-value=5.3e-24 Score=175.24 Aligned_cols=111 Identities=25% Similarity=0.476 Sum_probs=100.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECC-eEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~-~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
+||+++|++|||||||+++|.++.|. .+.+|++.+++.+.+.+++ ..+.++||||+|++.+..++..|++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 59999999999999999999999998 7888999999988888864 679999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCC---CCceEEEEe
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQ---VTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~---~~~piIlVa 211 (215)
||+++++||+++..|++++.+... .+.|++||+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVg 116 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVG 116 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEE
Confidence 999999999999999999988653 356777664
No 57
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.91 E-value=8.1e-24 Score=167.02 Aligned_cols=113 Identities=19% Similarity=0.429 Sum_probs=104.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+++|.++++. .+.++.|.++..+.+.+++..+.+++||++|++++..+...+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 489999999999999999999999998 6677889999888889999899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
||+++++||+++..|++++++...+++|++||+.
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~n 117 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGN 117 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 9999999999999999999887667899888764
No 58
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.91 E-value=8.5e-24 Score=165.70 Aligned_cols=112 Identities=15% Similarity=0.241 Sum_probs=99.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
++||+++|++|||||||+++|+.+.|. .+.+|++..+ .+.+.+++..+.++||||+|+++|..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 479999999999999999999999998 6667777555 46788889999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
||+++++||+++..|+.++.+.. ..+.|++||+.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 114 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 99999999999999999997754 36789888763
No 59
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.91 E-value=7.2e-24 Score=165.26 Aligned_cols=111 Identities=16% Similarity=0.364 Sum_probs=101.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC--CeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~--~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
+||+++|++|||||||+++|.++.|. ++.+|.+.++..+.+.++ +..+++++||++|+++|..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999999998 777899999887778777 788999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|||+++++||+++..|++++.+.. .++|+++|+.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~n 114 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQT 114 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 999999999999999999998766 5788777763
No 60
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.91 E-value=1.2e-23 Score=169.40 Aligned_cols=111 Identities=23% Similarity=0.377 Sum_probs=101.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
+||+++|++|||||||+++|+++.|. .+.+|++.++..+.+.+++..+.+++||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 58999999999999999999999997 4777899888888899999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
||+++++||+++..|+++++... .++|++||+.
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~n 113 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGT 113 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEE
Confidence 99999999999999999998764 5789877764
No 61
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.91 E-value=1.4e-23 Score=165.09 Aligned_cols=106 Identities=20% Similarity=0.368 Sum_probs=91.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd 180 (215)
+||+++|++|||||||+.+|+++.|.+..++++.++ .+.+.+++..+.+++||++|++. ..+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 589999999999999999999999984444555555 47788999999999999999985 357789999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 181 LTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
++|++||+++..|++++.++.. .++|++||+.
T Consensus 75 ~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgn 107 (158)
T cd04103 75 LENEASFQTVYNLYHQLSSYRNISEIPLILVGT 107 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEee
Confidence 9999999999999999988764 6789888764
No 62
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.91 E-value=1e-23 Score=166.71 Aligned_cols=113 Identities=22% Similarity=0.487 Sum_probs=103.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC-ccchhhccCCcEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAILF 177 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~-~~~~~~~~~a~~iil 177 (215)
.+||+++|++|||||||+++|..+.|. .+.++.+.++..+.+.+++..+.+++||++|+++|. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 489999999999999999999999998 777889999988899999999999999999999986 578889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
|||+++++||+++..|++++.+.. ..++|+++|+-
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~n 117 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGN 117 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 999999999999999999998865 36799888864
No 63
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=9.8e-24 Score=170.34 Aligned_cols=112 Identities=26% Similarity=0.552 Sum_probs=103.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
+||+++|++|||||||+++|.+++|. .+.+|++.++..+.+.+++..+.++||||+|++++..++..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 59999999999999999999999986 5667888888888888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
||+++++||+++..|+.++.+....++|+++|+.
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~N 114 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGN 114 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 9999999999999999999988777899988753
No 64
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.8e-24 Score=164.44 Aligned_cols=112 Identities=21% Similarity=0.446 Sum_probs=107.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
-+|.+++||-|||||+|+++|.+.+|. +...|+|.+|..+.+.+.|.+++++||||+|||+|+...+.||+++.+.++|
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv 90 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 90 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence 689999999999999999999999999 8888999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
||++.+++++.+..|+.+.+....++..|+|+.
T Consensus 91 yditrrstynhlsswl~dar~ltnpnt~i~lig 123 (215)
T KOG0097|consen 91 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIG 123 (215)
T ss_pred EEehhhhhhhhHHHHHhhhhccCCCceEEEEec
Confidence 999999999999999999999888888887764
No 65
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.91 E-value=9.2e-24 Score=177.76 Aligned_cols=111 Identities=15% Similarity=0.273 Sum_probs=99.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|++++|. .+.+|++ +++.+.+.+++..+.++||||+|++.|..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998 6667776 777788899999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhH---------CCCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKW---------NQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~---------~~~~~piIlVa~ 212 (215)
|+++++||+++..|++++.+. ...++|+|||+.
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgN 121 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGN 121 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEE
Confidence 999999999999999999754 235789888764
No 66
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=1.4e-23 Score=172.51 Aligned_cols=112 Identities=22% Similarity=0.495 Sum_probs=101.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEE-CCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
.+||+++|++|||||||+++|.++.|. .+.+|++.++..+.+.+ ++..+++++|||+|+++|..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999998 67789999999888887 4778999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
|||++|++||+++..|++++.+... ...|++||+
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvg 116 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVG 116 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 9999999999999999999987654 457776664
No 67
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.91 E-value=1.9e-23 Score=162.16 Aligned_cols=112 Identities=13% Similarity=0.222 Sum_probs=99.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+++|.++.|. .+.+|.+..+ .+.+.+++..+.+++||++|+++|..++..|+++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 379999999999999999999999998 6666776544 56778888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
||+++++||+++..|+.++.+... .+.|++||+-
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~n 114 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGN 114 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 999999999999999999988753 5788877653
No 68
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.91 E-value=2.7e-23 Score=161.84 Aligned_cols=112 Identities=20% Similarity=0.447 Sum_probs=103.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|+++||||||++++.++++. .+.++.+.++..+.+.+++..+++++||++|++++..++..+++++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998 77788999999999999988899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|+++++||+.+..|++++.+....++|+++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~n 113 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGN 113 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 999999999999999999876655799888864
No 69
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.91 E-value=3.6e-23 Score=164.08 Aligned_cols=110 Identities=24% Similarity=0.425 Sum_probs=96.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+|++++|++|||||||+.+|.++.|. ++.+| +.+++...+.+++..+++++||++|+++|..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-eeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 58999999999999999999999999 55544 45666778888998999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~ 212 (215)
|++|++||+++. .|+.++++.. ++.|+++|+.
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~n 112 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGT 112 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEee
Confidence 999999999995 7999998654 4688777764
No 70
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.90 E-value=2.3e-23 Score=166.92 Aligned_cols=110 Identities=18% Similarity=0.386 Sum_probs=96.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
+||+++|++|||||||+++|.++.|. .+.++++.++.. .+..+ +..++++||||+|+++|..+++.+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 58999999999999999999999998 777788777654 45554 7889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~ 212 (215)
||+++++||+++. .|+.++.... .++|++||+.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~n 113 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGL 113 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEe
Confidence 9999999999996 6999988765 5789888763
No 71
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.90 E-value=1.9e-23 Score=168.47 Aligned_cols=109 Identities=16% Similarity=0.257 Sum_probs=96.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd 180 (215)
||+++|++|||||||+++|+++.|. .+.+|++..+ .+.+.+++..+.++||||+|+++|..++..|++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 6999999999999999999999998 6667777554 4567788889999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCC---CCceEEEEe
Q 028037 181 LTSRCTLNSIVGWYSEARKWNQ---VTKQSLFFH 211 (215)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~~---~~~piIlVa 211 (215)
+++++||+++..|++.+..... .++|+|||+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvg 113 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVG 113 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 9999999999999999977542 578988775
No 72
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.90 E-value=3.1e-23 Score=171.77 Aligned_cols=108 Identities=21% Similarity=0.358 Sum_probs=96.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd 180 (215)
+||+++|++|||||||+++|.+++|.++.+|+|.+++.+.+ ..+.+.||||+|+++|..++..|++++|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 58999999999999999999999998778889888765433 46889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 181 LTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+++++||+++..|+..+.+....++|+|||+.
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgN 108 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGN 108 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999999999998888776656789888864
No 73
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.90 E-value=6.3e-23 Score=162.05 Aligned_cols=108 Identities=19% Similarity=0.430 Sum_probs=95.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi 181 (215)
|+++|++|||||||+++|.++.|. .+.++.+..+ ...+.+++..+.+++|||+|+++|..+++.+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 589999999999999999999998 6666666544 46678889999999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037 182 TSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 182 t~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~ 212 (215)
++++||+++. .|++++.+.. +++|++||+.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~n 110 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGT 110 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEec
Confidence 9999999996 6999998876 5789888764
No 74
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.90 E-value=6.2e-23 Score=161.36 Aligned_cols=111 Identities=13% Similarity=0.202 Sum_probs=97.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|+++.|. .+.++.+..+ .+.+..++..+.+++|||+|+++|..++..++++++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 79999999999999999999999998 6667776444 456667788899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCC---CCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQ---VTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~---~~~piIlVa~ 212 (215)
|+++++||+++..|++.+++... .++|++||+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 116 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGN 116 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 99999999999999998877542 5789888764
No 75
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.90 E-value=1.1e-23 Score=162.07 Aligned_cols=120 Identities=53% Similarity=0.844 Sum_probs=113.6
Q ss_pred CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccC
Q 028037 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD 171 (215)
Q Consensus 93 ~~~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ 171 (215)
++.++...+||-++||+.+|||||+.+|+++++. ++..+.|.++..+++.+.|..+.+.|||.+||+++..+.+..+++
T Consensus 13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d 92 (205)
T KOG1673|consen 13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD 92 (205)
T ss_pred cccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC
Confidence 3446788999999999999999999999999998 777899999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+.+++++||++.++++++++.||.+.+..++..+||++--|
T Consensus 93 svaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTK 133 (205)
T KOG1673|consen 93 SVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTK 133 (205)
T ss_pred cEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccc
Confidence 99999999999999999999999999999999999998655
No 76
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.90 E-value=6.8e-23 Score=159.88 Aligned_cols=113 Identities=25% Similarity=0.474 Sum_probs=104.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
++||+++|++|||||||++++.++++. .+.++.+.++..+.+.+++..+++.+||++|++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 479999999999999999999999998 5788889888888999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
||.++++||+.+..|++.+......++|+++|+.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~n 114 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGN 114 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 9999999999999999999887767788887764
No 77
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=8.3e-23 Score=161.97 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=100.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
..+||+++|++|||||||+++|+++.|. ++.+|++.++..+.+.+++..+.+.+||++|++++..++..+|+++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4689999999999999999999999996 56678898888888888998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+|||.++++||+++..|++++... .++|+++|+.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~N 116 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAA 116 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEE
Confidence 999999999999999999877432 3689888764
No 78
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.90 E-value=5.8e-23 Score=160.63 Aligned_cols=111 Identities=19% Similarity=0.363 Sum_probs=99.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC--CCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~--~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
+||+++|++|||||||++++.++ .|. ++.++.|.++..+.+.++ +..+++.+||++|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999975 677 777899999888888775 67799999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+|||+++++||+++..|++++.+.. .++|+++|+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~n 115 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGN 115 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 9999999999999999999998876 5678777653
No 79
>PLN03108 Rab family protein; Provisional
Probab=99.90 E-value=7.2e-23 Score=168.05 Aligned_cols=113 Identities=19% Similarity=0.403 Sum_probs=104.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+++|.+++|. .+.++++.++..+.+.+++..+.+++|||+|++.|..++..+++++|++++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 599999999999999999999999998 6778999999888899999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
||+++++||+++..|++++.+....+.|+++|+.
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~n 119 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGN 119 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 9999999999999999999887767899888764
No 80
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.90 E-value=1e-22 Score=158.68 Aligned_cols=112 Identities=25% Similarity=0.510 Sum_probs=104.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|.+..+. .+.++.+.++....+..++..+.+++||++|++++..+...+++++|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 59999999999999999999999988 67788898988888899998899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|+++++||+.+..|++++..+..+++|+++|+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~n 113 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGN 113 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 999999999999999999988767899988874
No 81
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.89 E-value=1.6e-22 Score=164.86 Aligned_cols=112 Identities=14% Similarity=0.198 Sum_probs=96.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc--------chhhccC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACKD 171 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~--------~~~~~~~ 171 (215)
+||+++|++|||||||+++|.+++|. .+.++++.+++...+.+++..+.++||||+|.+++... ...++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998 77888888887778888999999999999998765322 2345789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHC---CCCceEEEEee
Q 028037 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWN---QVTKQSLFFHI 212 (215)
Q Consensus 172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~---~~~~piIlVa~ 212 (215)
+|++|+|||+++++||+++..|++++.+.. ..++|++||+.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgN 124 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN 124 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 999999999999999999999999998764 46789888864
No 82
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-24 Score=168.01 Aligned_cols=112 Identities=26% Similarity=0.498 Sum_probs=100.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC---------CeEEEEEEEecCCCCCCCccchhhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ---------GARIAFSIWDVGGDSRSFDHVPIAC 169 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~---------~~~~~l~i~Dt~G~e~~~~~~~~~~ 169 (215)
.+|.+.+||+|||||||+++|.++.|. ....|+|+||..+.+.++ +..+.+++|||+|||+|+.+...||
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 579999999999999999999999999 888999999999988773 3569999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 170 ~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
++|-+|+++||+|+++||.++..|+.+++.+.= ++--|||+.
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcG 131 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCG 131 (219)
T ss_pred HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEc
Confidence 999999999999999999999999999987642 444456553
No 83
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.89 E-value=1.5e-22 Score=158.26 Aligned_cols=111 Identities=14% Similarity=0.220 Sum_probs=97.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|.++.|. .+.++.+ +.+.+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 59999999999999999999999998 5555655 445677788888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
|+++++||+++..|+..+.+.. ..+.|+++|+.
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~n 113 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGN 113 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 9999999999999999987754 34789887653
No 84
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.89 E-value=1.3e-22 Score=165.03 Aligned_cols=110 Identities=19% Similarity=0.369 Sum_probs=89.1
Q ss_pred eeeEEEEcCCCCCHHHHHH-HHhcCC-----CC-Ccccccee-eeEEEE--------EEECCeEEEEEEEecCCCCCCCc
Q 028037 100 SLKISLLGDCQIGKTSFVV-KYVGNE-----QE-RSLQMAGL-NLINKT--------LMVQGARIAFSIWDVGGDSRSFD 163 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~-r~~~~~-----f~-~~~~t~g~-~~~~~~--------v~~~~~~~~l~i~Dt~G~e~~~~ 163 (215)
.+||+++|++|||||||+. ++.++. |. ++.||++. +.+... +.+++..+.++||||+|++++
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 665543 44 56678863 433322 257899999999999999863
Q ss_pred cchhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037 164 HVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 164 ~~~~~~~~a~~iilvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~ 212 (215)
+...+|+++|++|+|||+++++||+++. .|++++++.. +++|++||+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgN 128 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGC 128 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 5677899999999999999999999997 6999998876 5789888764
No 85
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.89 E-value=3.6e-22 Score=155.76 Aligned_cols=112 Identities=12% Similarity=0.189 Sum_probs=98.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+++|+++.+. ++.++++..+ ...+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 489999999999999999999999988 6666766444 55677888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
||+++++||+++..|++++.+.. ..++|++||+.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEee
Confidence 99999999999999999998764 35788877653
No 86
>PLN03118 Rab family protein; Provisional
Probab=99.89 E-value=4.7e-22 Score=162.98 Aligned_cols=113 Identities=27% Similarity=0.506 Sum_probs=100.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
..+||+++|++|||||||+++|.++.+.++.++.+.++....+.+++..+.+.||||+|+++|..++..+++++|++|+|
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv 92 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV 92 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999998887788999988888888888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHH-HHHHHHhHCC-CCceEEEEe
Q 028037 179 FDLTSRCTLNSIVG-WYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~~-wl~~i~~~~~-~~~piIlVa 211 (215)
||+++++||+++.. |...+..+.. .+.|++||+
T Consensus 93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~ 127 (211)
T PLN03118 93 YDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVG 127 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 99999999999975 7777766543 456766654
No 87
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.88 E-value=7.4e-22 Score=155.94 Aligned_cols=109 Identities=17% Similarity=0.336 Sum_probs=95.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|.+++|. .+.++.+ +.+...+.+++..+.+++||++|++.|..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 59999999999999999999999998 5555554 445567788888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037 180 DLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 180 dit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa 211 (215)
|+++++||+++. .|++.+++. .++.|+++|+
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~ 111 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVG 111 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEe
Confidence 999999999996 799999876 4678877765
No 88
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.88 E-value=5.2e-22 Score=153.97 Aligned_cols=112 Identities=27% Similarity=0.509 Sum_probs=101.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|+++.+. .+.++.+.++....+.+.+..+.+.+||++|++.+..+++.+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 59999999999999999999999998 56667777777778888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|++++++|+.+..|++++.+....++|+++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~n 113 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGN 113 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 999999999999999999988766889888764
No 89
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.88 E-value=7.5e-22 Score=162.13 Aligned_cols=116 Identities=22% Similarity=0.363 Sum_probs=105.3
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCc
Q 028037 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (215)
Q Consensus 95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~ 173 (215)
..+...+||+++|++|||||||+++|+.+.|. .+.+|.+.++....+..++..+.+++||++|+++|..++..++++++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 33455799999999999999999999999998 78889999998888888889999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 174 AILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 174 ~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++++|||++++.||+++..|+.++.+.. .++|+++|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~ 120 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVG 120 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence 9999999999999999999999998775 568887665
No 90
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.88 E-value=8.6e-22 Score=153.52 Aligned_cols=112 Identities=24% Similarity=0.496 Sum_probs=101.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..+...+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 59999999999999999999999998 67788898888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
|+++++||+.+..|++.+.++.. .+.|+++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~n 114 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGN 114 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 99999999999999999988763 5788777653
No 91
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.88 E-value=7.9e-22 Score=155.51 Aligned_cols=112 Identities=18% Similarity=0.237 Sum_probs=99.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+++|.++.|. .+.++.+.. +.+.+.+++..+.+++||++|+++|..++..++++++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 379999999999999999999999998 666677654 467788889999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
||++++++|+++..|.+++.+.. ..+.|+++|+.
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 114 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGN 114 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEE
Confidence 99999999999999999997743 35799877653
No 92
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.88 E-value=9.1e-22 Score=155.56 Aligned_cols=109 Identities=20% Similarity=0.396 Sum_probs=96.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
.||+++|++|||||||+++|.++.|. .+.++.+..+. ..+.+++..+.+.+|||+|+++|..++..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 69999999999999999999999998 66677776554 46778888999999999999999999989999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037 180 DLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 180 dit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa 211 (215)
|+++++||+++. .|+.++++.. .++|+++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~ 112 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVG 112 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEe
Confidence 999999999996 6999988765 578988876
No 93
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.88 E-value=2.6e-22 Score=163.49 Aligned_cols=113 Identities=13% Similarity=0.213 Sum_probs=103.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|.+|||||+|+.+|+++.|. +|.||++ +.+.+.+.+++..+.+.|+||+|+++|..+...|++++|+|++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 4689999999999999999999999999 6666666 8888999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
||+++|+.||+.+..++++|.+.. ..++|++||+.
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGN 116 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGN 116 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEE
Confidence 999999999999999999995544 36789999874
No 94
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.88 E-value=6.6e-22 Score=155.24 Aligned_cols=110 Identities=15% Similarity=0.299 Sum_probs=93.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC-CCccchhhccCCcEEEEEE
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~-~~~~~~~~~~~a~~iilvf 179 (215)
||+++|++|||||||+++|+++.|. ++.++.+..+ .+.+.+++..+.+++||++|++. +......+++++|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 7999999999999999999999998 6666665444 46677889999999999999996 3456778899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWN--QVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~--~~~~piIlVa~ 212 (215)
|+++++||+++..|+..+.+.. ..++|+++|+.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~n 114 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGN 114 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 9999999999999999998765 35788888763
No 95
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.88 E-value=1.1e-21 Score=154.12 Aligned_cols=111 Identities=23% Similarity=0.379 Sum_probs=100.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||++++.++.+. .+.++.+.++..+.+.+++..+.+++||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 59999999999999999999999988 66678888888888899999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCC----CCceEEEEe
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQ----VTKQSLFFH 211 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~----~~~piIlVa 211 (215)
|++++++|+++..|.+++..... .++|+++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 116 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLG 116 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEE
Confidence 99999999999999998866543 378988774
No 96
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.87 E-value=8e-22 Score=155.61 Aligned_cols=106 Identities=13% Similarity=0.129 Sum_probs=92.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd 180 (215)
.|+++|++|||||||+++|.++.|. ++.+|+|.++ ..+++..+++++||++|+++|..++..+++++|++++|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 3799999999999999999999888 7778888653 3345667899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 181 LTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
.+++++|++++.|+.++.+.. .++|++||+.
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~N 107 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLAN 107 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEe
Confidence 999999999999999987554 5788887753
No 97
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=3.4e-21 Score=151.28 Aligned_cols=113 Identities=21% Similarity=0.436 Sum_probs=102.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||++++.++.+. .+.++.+.++..+.+.+++..+.+.+||++|++.|......+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 3699999999999999999999998888 667788888888888999999999999999999999988999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
|||+++++||+.+..|+++++.....++|+++|+
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~ 119 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVG 119 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 9999999999999999999988776678866665
No 98
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.87 E-value=8e-22 Score=154.76 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=91.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd 180 (215)
+||+++|+++||||||++++..++|..+.+|+|.++. .+.. ..+.+++||++|++++..++..||+++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 4899999999999999999999999877888887753 3333 46889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhH-CCCCceEEEEe
Q 028037 181 LTSRCTLNSIVGWYSEARKW-NQVTKQSLFFH 211 (215)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa 211 (215)
+++++||+++..|+.++.+. ...+.|++||+
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 108 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFA 108 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEE
Confidence 99999999999888877542 22457877775
No 99
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.87 E-value=1.7e-23 Score=164.65 Aligned_cols=114 Identities=18% Similarity=0.365 Sum_probs=107.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
..-+|++++|..+|||+|+++|||.+-|. +|..|+|.++-...+.++++.+.+.+||++||++|+.+...||++|++.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 34689999999999999999999999999 88889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|||+-+|+.||+.+..|++++.+.. ..+|.++|..
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqN 132 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQN 132 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeec
Confidence 9999999999999999999999887 6799888754
No 100
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.87 E-value=1.3e-21 Score=157.09 Aligned_cols=114 Identities=20% Similarity=0.253 Sum_probs=99.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEE-CCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||++++..++|.++.+|.|.++....+.+ ++..+++++|||+|++++..++..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 368999999999999999999999999866788888877666655 4467999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
|||.++.++|+.+..|+.++.+.. ..+.|++||+.
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~N 117 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLAN 117 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 999999999999999999987654 35688877653
No 101
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.87 E-value=1.1e-21 Score=156.48 Aligned_cols=110 Identities=19% Similarity=0.284 Sum_probs=94.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
..+||+++|++|||||||+++|..++|..+.+|+|.++.. +.. ..+.+++||++|++++..++..|++++|++|+|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 3689999999999999999999988888777888887653 333 358899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
||++++++|+++..|+.++.+.. ..++|++||+.
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 122 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFAN 122 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence 99999999999999988875432 25688877753
No 102
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.87 E-value=7.3e-22 Score=156.49 Aligned_cols=110 Identities=19% Similarity=0.271 Sum_probs=93.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
..+||+++|+++||||||++++..++|..+.+|+|.++. .+.. ..+++++|||+|++++..+++.+|+++|++++|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 368999999999999999999999888877788887764 2333 468899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhH-CCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa~ 212 (215)
||++++.+|+++..|+.++.+. ...++|++||+.
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 118 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFAN 118 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEE
Confidence 9999999999999888777543 235688888764
No 103
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.87 E-value=2.2e-21 Score=160.65 Aligned_cols=110 Identities=14% Similarity=0.209 Sum_probs=94.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhcc-CCcEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK-DAVAILF 177 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~-~a~~iil 177 (215)
+||+++|++|||||||+++|++++|. .+.++.+.+++.+.+.+++..+.+++||++|++ ......+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 59999999999999999999999885 444555558888889999999999999999998 334455667 9999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
|||++|++||+++..|++++.+... .++|+|||+.
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~N 114 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGN 114 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 9999999999999999999987653 5789888863
No 104
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=9.3e-22 Score=157.92 Aligned_cols=110 Identities=20% Similarity=0.256 Sum_probs=93.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
..+||+++|+++||||||+++|..++|..+.+|+|.++. .+. ...+.+++||++|++++..++..||+++|++|+|
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 468999999999999999999999988877788887754 333 3458899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhH-CCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa~ 212 (215)
||++++++|+++..|+.++.+. .-.++|++||+.
T Consensus 92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~N 126 (181)
T PLN00223 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEE
Confidence 9999999999999888877542 225688888764
No 105
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.86 E-value=3.7e-21 Score=143.16 Aligned_cols=110 Identities=25% Similarity=0.472 Sum_probs=89.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC---CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~---~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
||+++|+.|||||||+++|+++.+. .+.++.+.++......+.+....+.+||++|++.+...+..++.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999999886 2333445566666777777777899999999999988888889999999999
Q ss_pred EeCCChhhHHHHH---HHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIV---GWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~---~wl~~i~~~~~~~~piIlVa~ 212 (215)
||+++++||+++. .|+..++... .++|++||+-
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~n 116 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGN 116 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEe
Confidence 9999999999985 4666666655 5599999874
No 106
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.86 E-value=6.9e-21 Score=146.21 Aligned_cols=112 Identities=23% Similarity=0.510 Sum_probs=103.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|+++||||||++++.++.+. .+.++.+.++....+..++..+.+.+||++|++.+......+++++|++++||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998 66788899999899999888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|.+++++++.+..|+..+......+.|+++|+.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 113 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGN 113 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 999999999999999999988766788877753
No 107
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=6.3e-21 Score=150.21 Aligned_cols=110 Identities=19% Similarity=0.309 Sum_probs=91.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd 180 (215)
.||+++|++|||||||+++|.++.|.+..++...++ .....+++..+++++|||+|++++...+..+++++|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 489999999999999999999999984445443333 3445567788999999999999988888888999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037 181 LTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 181 it~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~ 212 (215)
+++++||+++. .|++.++... .++|+++|+.
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~n 111 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLG-VKVPIILVGN 111 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 99999999985 7999998766 4788777653
No 108
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=6.9e-21 Score=154.63 Aligned_cols=110 Identities=12% Similarity=0.217 Sum_probs=97.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd 180 (215)
||+++|++|||||||+++|+++.|. .+.++.+ ++..+.+.+++..+.+++||++|++.|..++..++.++|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 7999999999999999999999998 5555654 5666778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 181 LTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
++++++|+++..|+..+.+... .++|+|||+.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~N 112 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGN 112 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 9999999999999999988754 5788888764
No 109
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.85 E-value=5.2e-21 Score=151.35 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=91.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi 181 (215)
||+++|+++||||||+++|.++.|..+.+|+|.++. .+.. ..+.+++||++|++++..++..+++++|++++|||.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 789999999999999999999988777888887764 2333 468899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 182 TSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 182 t~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
+++++|+++..|+.++.+.. ..+.|++||+.
T Consensus 77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 108 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEKELRDALLLIFAN 108 (169)
T ss_pred CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEe
Confidence 99999999999999987543 24578777653
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.85 E-value=4.5e-21 Score=154.03 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=92.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
.+||+++|++|||||||++++..++|..+.+|+|.++. .+.. ..+.+++||++|++++..++..|++++|++|+||
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~ 92 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV 92 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998877788887764 3333 4588999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhH-CCCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa~ 212 (215)
|+++++||+++..|+.++.+. ...+.|++||+.
T Consensus 93 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 126 (182)
T PTZ00133 93 DSNDRERIGDAREELERMLSEDELRDAVLLVFAN 126 (182)
T ss_pred eCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEe
Confidence 999999999999888777432 224678887753
No 111
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.85 E-value=3.6e-20 Score=145.35 Aligned_cols=110 Identities=19% Similarity=0.417 Sum_probs=94.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||+++|.++.+. .+.++.. +.....+..++..+.+++||++|++++......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 58999999999999999999999997 6555554 444566677889999999999999999988999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~ 212 (215)
|+++++||..+. .|+..+.... .+.|+++|+.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~n 112 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGT 112 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEc
Confidence 999999999885 6998888766 4788777753
No 112
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.85 E-value=9.1e-21 Score=155.24 Aligned_cols=112 Identities=25% Similarity=0.329 Sum_probs=100.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+++|.++.|. .+.++++.++........+..+++.+|||+||++|+.+++.|+.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 499999999999999999999999999 6777888888877777776789999999999999999999999999999999
Q ss_pred EeCCC-hhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 179 FDLTS-RCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 179 fdit~-~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
||.++ ..+++....|++++......+.|+++|.
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~ 118 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVG 118 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEe
Confidence 99999 5555666799999999887679998886
No 113
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.84 E-value=5.1e-20 Score=148.13 Aligned_cols=110 Identities=21% Similarity=0.366 Sum_probs=95.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
.|++++|+.|+|||||+++|..+.|. .+.++.+.++. ..+.+++..+.+.+||++|++.+....+.++++++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 69999999999999999999999888 55666665554 46677888899999999999999888888899999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037 180 DLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~ 212 (215)
|+++++||+++. .|++.+++.. +++|++||+.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgn 113 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGL 113 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEee
Confidence 999999999997 6999998776 4689888763
No 114
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.84 E-value=4e-20 Score=143.79 Aligned_cols=110 Identities=13% Similarity=0.222 Sum_probs=96.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+||+++|++|||||||++++.+++|. ++.++++.. ..+....++..+.+.+||++|++.+..++..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 59999999999999999999999998 666666644 4566778889999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
|+++++||+++..|+..+.+... .++|+++|+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~ 112 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVG 112 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 99999999999999999988643 578877665
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.83 E-value=3.2e-20 Score=146.76 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=90.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd 180 (215)
+|+++|++|||||||+++|.++ |. .+.+|.|.+. ..+..+ .+++++||++|++++..++..||+++|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 5899999999999999999977 66 7778888653 344443 5889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 181 LTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
.+++++|+++..|+.++.+... .+.|++||+.
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~N 108 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLAN 108 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence 9999999999999999976543 5688887764
No 116
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.83 E-value=6.5e-20 Score=141.88 Aligned_cols=110 Identities=15% Similarity=0.281 Sum_probs=97.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd 180 (215)
||+++|++|||||||++++.++.+. .+.++.+ +...+.+..++..+.+++||++|++.+..++..+++++|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 7999999999999999999999887 6666666 6666777788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 181 LTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
+++++|++++..|+..+.+... ...|+++|+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 112 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGN 112 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 9999999999999999988765 5788887764
No 117
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.83 E-value=4.4e-20 Score=146.29 Aligned_cols=110 Identities=22% Similarity=0.291 Sum_probs=92.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
...+||+++|++|||||||+++|.++.+..+.+|.|..+ ..+.++ .+.+++||++|++.+..++..+++++|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 346899999999999999999999886667777888544 345555 4789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhH-CCCCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa 211 (215)
|||.+++++|+++..|+.++.+. ...++|++||+
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~ 122 (173)
T cd04154 88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILA 122 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 99999999999999999888543 23568877765
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.82 E-value=8.9e-20 Score=141.96 Aligned_cols=108 Identities=17% Similarity=0.270 Sum_probs=91.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi 181 (215)
||+++|++|||||||+++|.++++..+.+|.+.++. .+.. +..+.+.+||++|++++..++..+++++|++++|||.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999999998866788886653 3444 3468999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 182 TSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 182 t~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
++..+|+.+..|+.++.+.. ..+.|++||+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 109 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLAN 109 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 99999999999998886543 25788887763
No 119
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.82 E-value=1.6e-19 Score=143.56 Aligned_cols=110 Identities=16% Similarity=0.207 Sum_probs=96.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
.||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+++||++|+++|..++..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 69999999999999999999999988 5667766554 466777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 180 DLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
|+++.++|+.+..|+..+.+.. ..+.|+|+|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 113 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVG 113 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 9999999999999998887754 3567877766
No 120
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.82 E-value=1.2e-19 Score=141.21 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=88.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-C-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f-~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
+|+++|++|||||||+++|.++.+ . .+.+|+|..+. .+. ...+++++||++|++++..++..+++++|++++||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999999864 4 56678886543 222 34688999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC---CCCceEEEEe
Q 028037 180 DLTSRCTLNSIVGWYSEARKWN---QVTKQSLFFH 211 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~---~~~~piIlVa 211 (215)
|.+++.+|+.+..|+.++.+.. ..++|++||+
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 111 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFA 111 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEE
Confidence 9999999999999999886532 2568877765
No 121
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.81 E-value=1.5e-19 Score=143.65 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=91.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
.+||+++|++|||||||++++.++++..+.+|.+.++. .+.++ .+++.+||++|++++...+..+++++|++++||
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999999999877788887754 33333 588999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
|.+++++|..+..|+.++.+... .+.|+++++
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~ 123 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAHEDLRKAVLLVLA 123 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEE
Confidence 99999999999888887755432 467866664
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.80 E-value=2.4e-19 Score=139.86 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=88.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi 181 (215)
||+++|+++||||||++++..+.+..+.+|++.++. .+. +..+++++|||+|++.+..++..+++++|++++|||.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 799999999999999999998888877778887654 233 3457899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHh-HCCCCceEEEEee
Q 028037 182 TSRCTLNSIVGWYSEARK-WNQVTKQSLFFHI 212 (215)
Q Consensus 182 t~~~Sf~~i~~wl~~i~~-~~~~~~piIlVa~ 212 (215)
+++.+|.....|+..+.+ ....+.|++||+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFAN 108 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEe
Confidence 999999988776665533 3334688777753
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.80 E-value=7e-19 Score=136.76 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=91.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi 181 (215)
||+++|++|||||||+++++++++..+.++.+.++. .+.++ .+.+.+||++|++.+...+..+++++|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 799999999999999999999987677778886654 34443 57899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 182 TSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 182 t~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
+++++|..+..|+..+.+.. ..+.|+++|+-
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFAN 108 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEee
Confidence 99999999999998886643 35788887653
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.78 E-value=1.5e-18 Score=139.38 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=91.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
..+||+++|.+|||||||++++.++.+..+.+|.+.... .+.++ .+++.+||++|++.+..++..|+.++|++++|
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE--ELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 358999999999999999999999888766667665433 34444 47899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
+|.+++++|+....|+.++.+.. ..+.|+++|+.
T Consensus 92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~N 126 (184)
T smart00178 92 VDAYDKERFAESKRELDALLSDEELATVPFLILGN 126 (184)
T ss_pred EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEe
Confidence 99999999999999988876532 25678777764
No 125
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.3e-18 Score=138.12 Aligned_cols=114 Identities=22% Similarity=0.328 Sum_probs=105.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+|++++||.|.|||++++|...++|. .+.+|+|.+........+...+++..|||+|||.+..+..-||-++.+.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 45899999999999999999999999999 78889999988766666666799999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
++||++++-++.++..|..++.+.+ .++||++++.
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGN 122 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGN 122 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeecc
Confidence 9999999999999999999999988 5699999863
No 126
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.77 E-value=2.7e-18 Score=137.77 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=92.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
..+||+++|++|||||||++++.++++..+.+|.+... ..+.+++ +.+.+||++|++++..++..+++++|++++|
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 47899999999999999999999988877777777654 3455554 6789999999999988889999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
||+++.++|+....|+.++.+... .+.|+++|+.
T Consensus 94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~N 128 (190)
T cd00879 94 VDAADPERFQESKEELDSLLSDEELANVPFLILGN 128 (190)
T ss_pred EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEe
Confidence 999999999999999988876432 5688777653
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.77 E-value=3.2e-18 Score=131.51 Aligned_cols=106 Identities=21% Similarity=0.352 Sum_probs=90.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd 180 (215)
.|+++|++|||||||++++.+++|. ++.++.+.++. .+..++ +.+.+||++|++++..++..+++++|++++|||
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3789999999999999999999999 78888887765 334433 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhH-CCCCceEEEEe
Q 028037 181 LTSRCTLNSIVGWYSEARKW-NQVTKQSLFFH 211 (215)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa 211 (215)
.++.++|..+..|+.++.+. ...++|+++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 108 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLG 108 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEE
Confidence 99999999998888887543 22567877664
No 128
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.77 E-value=3.7e-18 Score=133.70 Aligned_cols=106 Identities=20% Similarity=0.243 Sum_probs=86.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC------C-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f------~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ 174 (215)
+|+++|++|||||||++++.+... . .+.+|.+.++. .+.++ ...+.+||++|++.+..++..+++++|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999975322 2 44567777664 34444 5789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 175 ILFMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 175 iilvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
+++|||.++.++++.+..|+.++.+.. ..++|++||+
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 999999999999999999998886643 3568877765
No 129
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.75 E-value=7.7e-18 Score=134.52 Aligned_cols=111 Identities=21% Similarity=0.256 Sum_probs=95.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
...+||+++|..|+|||||++++..+++....||.|.+.. .+..++ +.+++||.+|++.++.+|+.||.++|++|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~--~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIE--EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEE--EEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccc--eeeeCc--EEEEEEeccccccccccceeeccccceeEE
Confidence 4589999999999999999999998887788889997754 455554 678999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
|.|.+|.+.+++....+.++.... -.++|++|++.
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~N 123 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILAN 123 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEE
T ss_pred EEecccceeecccccchhhhcchhhcccceEEEEec
Confidence 999999999999998888876543 25789887763
No 130
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.74 E-value=3.8e-17 Score=124.49 Aligned_cols=112 Identities=16% Similarity=0.242 Sum_probs=98.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|.+|+|||||++++..+.+. ++.++++.++....+..++..+.+.+||++|++++..++..+++++++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 379999999999999999999999977 7777888888877788888779999999999999999999999999999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037 179 FDLTSR-CTLNSIV-GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 179 fdit~~-~Sf~~i~-~wl~~i~~~~~~~~piIlVa 211 (215)
+|+... .++.+.. .|...+.+....+.|+++|.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 115 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVG 115 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEE
Confidence 999998 8888876 89888887765478877664
No 131
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.2e-17 Score=132.14 Aligned_cols=112 Identities=20% Similarity=0.276 Sum_probs=98.9
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
....+.+|+++|-.++||||+++++..+++..+.||+|.+.. .+.+. ++.+++||.+||++++.+|..||++.+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE--~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVE--TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccccee--EEEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 345689999999999999999999999999988999998765 44444 68999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
|+|.|.+|++-+.++++-+..+-...+ .++|+++.|
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~a 125 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFA 125 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEe
Confidence 999999999999999987777766554 679988887
No 132
>PTZ00099 rab6; Provisional
Probab=99.72 E-value=4.5e-17 Score=130.45 Aligned_cols=91 Identities=16% Similarity=0.349 Sum_probs=82.4
Q ss_pred cCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhH
Q 028037 122 GNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (215)
Q Consensus 122 ~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~ 200 (215)
.+.|. ++.+|+|.++..+.+.+++..+++.||||+|+++|..++..||+++|++|+|||+++++||+++..|+.++.+.
T Consensus 2 ~~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~ 81 (176)
T PTZ00099 2 YDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE 81 (176)
T ss_pred CCCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 35677 77889999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCceEEEEee
Q 028037 201 NQVTKQSLFFHI 212 (215)
Q Consensus 201 ~~~~~piIlVa~ 212 (215)
...++|++||+.
T Consensus 82 ~~~~~piilVgN 93 (176)
T PTZ00099 82 RGKDVIIALVGN 93 (176)
T ss_pred cCCCCeEEEEEE
Confidence 656788777753
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.71 E-value=8.2e-17 Score=126.89 Aligned_cols=109 Identities=17% Similarity=0.267 Sum_probs=90.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
..+||+++|++|||||||++++.+..+..+.++.|.++. .+..++ ..+.+||++|++++...+..+++++|++++|
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 378999999999999999999999887766677776543 445554 6789999999999888888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
||.++..+|.....|+..+.+.. ..++|+++++
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 122 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFA 122 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 99999999999988887775432 3568887764
No 134
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.70 E-value=1.3e-16 Score=130.52 Aligned_cols=110 Identities=19% Similarity=0.227 Sum_probs=86.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCC-cEEEEEEe
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA-VAILFMFD 180 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a-~~iilvfd 180 (215)
+|+++|++|||||||+++|.++++....+++..++........+....+.+||++|++++......+++++ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999999886555554444332222224567899999999999998888899999 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHHhH---CCCCceEEEEe
Q 028037 181 LTSR-CTLNSIVGWYSEARKW---NQVTKQSLFFH 211 (215)
Q Consensus 181 it~~-~Sf~~i~~wl~~i~~~---~~~~~piIlVa 211 (215)
.++. +++..+..|+.++... ...++|++|++
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~ 116 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIAC 116 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEe
Confidence 9998 7888888777665432 22578877765
No 135
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.69 E-value=1.5e-16 Score=126.02 Aligned_cols=106 Identities=13% Similarity=0.218 Sum_probs=81.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC-------CC-Cccc------cceeeeEEEEEEE-----CCeEEEEEEEecCCCCCCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNE-------QE-RSLQ------MAGLNLINKTLMV-----QGARIAFSIWDVGGDSRSF 162 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~-------f~-~~~~------t~g~~~~~~~v~~-----~~~~~~l~i~Dt~G~e~~~ 162 (215)
+|+++|+.+||||||+++|++.. +. .+.+ +.|.++....+.+ ++..+.+++|||+|+++|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 22 2222 2345555444433 6778999999999999999
Q ss_pred ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 163 ~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
.+...+++++|++|+|||.++..+++....|..... .++|+++|.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~ 126 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVI 126 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEE
Confidence 999999999999999999999888888877764332 346666554
No 136
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.69 E-value=2.9e-16 Score=122.05 Aligned_cols=110 Identities=20% Similarity=0.276 Sum_probs=91.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+++|+++|..++|||+++++|.+..-....||.|.+.. ++.++ .++++|||.+||...+..|+.||..+||+|.|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Ik--tl~~~--~~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIK--TLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeE--EEEec--ceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 389999999999999999999998876677788887654 44444 58899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
+|.+|+..|++...-++++..... ...|++|+|.
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlan 125 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLAN 125 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEe
Confidence 999999999999877777644221 3456666653
No 137
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.65 E-value=2.2e-15 Score=116.16 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=93.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC---CccccceeeeEEEEEEE-CCeEEEEEEEecCCCCCC-CccchhhccCCcE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE---RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRS-FDHVPIACKDAVA 174 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~---~~~~t~g~~~~~~~v~~-~~~~~~l~i~Dt~G~e~~-~~~~~~~~~~a~~ 174 (215)
..||+++|-.+||||+++.++..++.. ++.+|+ .|+|.-.+.. +|..-.+.++||+|-..+ ..+-..|+.-+|+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTi-EDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTI-EDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccch-hhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 579999999999999999999988765 444555 4666565555 467788999999998877 6677889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEeec
Q 028037 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHII 213 (215)
Q Consensus 175 iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~~ 213 (215)
|++|||..|++||+.+.....+|.++.+ ..+||+++|.+
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~ 127 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANK 127 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEech
Confidence 9999999999999999877777777654 56999998865
No 138
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.64 E-value=6.5e-16 Score=124.91 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=81.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc--CCCC-Cc------------cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG--NEQE-RS------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV 165 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~--~~f~-~~------------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~ 165 (215)
-+|+++|+++||||||+++|+. +.|. .+ ..+.|.++..+...+++..+.+++|||+|+++|....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 6665 22 1245666666666666677899999999999999999
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
..+++++|++++|||.++. .+.....|+..+.. .++|+++|.
T Consensus 83 ~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~---~~~p~iiv~ 124 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVI 124 (194)
T ss_pred HHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH---cCCCEEEEE
Confidence 9999999999999999884 34444555555543 245555443
No 139
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.2e-15 Score=116.04 Aligned_cols=110 Identities=18% Similarity=0.259 Sum_probs=93.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
++++|+++|-.++||||++++++-++.....||+|+++. ++.+ ++++|++||.+||++.+.+|..||.+..++|||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnve--tVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcccccccceeEE--EEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 478999999999999999999999988888999998754 4444 468899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhH-CCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa~ 212 (215)
.|..+++..++++.-+..+... .-.+.|+++.|.
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlAN 126 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILAN 126 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEec
Confidence 9999998888887544444332 235788888774
No 140
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.64 E-value=2.3e-15 Score=118.03 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=75.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchhhcc---CCc
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIACK---DAV 173 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~~~~---~a~ 173 (215)
.|+++|.+|||||||++++.+.+.. ...+....+.....+.+++ ...+.+|||+|+.+ +..+...+++ .+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999976543 2211111111111233333 25799999999742 3334455544 599
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037 174 AILFMFDLTSR-CTLNSIVGWYSEARKWNQ--VTKQSLFFH 211 (215)
Q Consensus 174 ~iilvfdit~~-~Sf~~i~~wl~~i~~~~~--~~~piIlVa 211 (215)
++++|||.++. ++++++..|++++..... .+.|+++|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~ 121 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVL 121 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEE
Confidence 99999999999 899999999999987653 356655554
No 141
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.64 E-value=3e-18 Score=135.69 Aligned_cols=114 Identities=20% Similarity=0.360 Sum_probs=102.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECC-eEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~-~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
..+|++++|+-|||||+++++|+...|. .|..|+|.++..+.+..+. ..+++++||.+||++|..+..-||+.+++..
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 3699999999999999999999999999 8888999999888887764 5589999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHC----CCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWN----QVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~----~~~~piIlVa~ 212 (215)
+|||+++..+|+.+..|.+++.... +..+|+|+.|.
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllan 143 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLAN 143 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccc
Confidence 9999999999999999999996543 34577777664
No 142
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.61 E-value=8.4e-15 Score=114.70 Aligned_cols=108 Identities=17% Similarity=0.238 Sum_probs=72.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc---------chhhccC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH---------VPIACKD 171 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~---------~~~~~~~ 171 (215)
+|+++|++|||||||+++|.++.+. ...+....+.....+ +...+.+++|||+|+...... .......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 7999999999999999999998875 322211111211122 223578999999998532110 0011123
Q ss_pred CcEEEEEEeCCChhhH--HHHHHHHHHHHhHCCCCceEEEEee
Q 028037 172 AVAILFMFDLTSRCTL--NSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 172 a~~iilvfdit~~~Sf--~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+|++++|||.+++++| +....|++++++.. .+.|+++|+-
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~N 121 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLN 121 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEE
Confidence 6899999999998764 66678999987654 4678777653
No 143
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.61 E-value=3.6e-15 Score=121.18 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=79.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc--cch------hhcc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--HVP------IACK 170 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~--~~~------~~~~ 170 (215)
.++|+++|++|||||||++++.++++. ...+....+.....+.+++. ..+.+|||+|..+... +.. ..+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 119 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEEVA 119 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHHHh
Confidence 479999999999999999999998754 32222222333344455443 3789999999743211 111 1256
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++|++++|+|.+++.+++.+..|.+.+......+.|+++|.
T Consensus 120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~ 160 (204)
T cd01878 120 EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVL 160 (204)
T ss_pred cCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEE
Confidence 89999999999999999999889888877665567766654
No 144
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.61 E-value=5.3e-15 Score=114.84 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=64.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC---CCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN---EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~---~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
.|+++|+++||||||+++|.+. .+. ++.+++..+.....+.+++ ...+++|||+|+++|......++.++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 5899999999999999999963 343 2233333333333444442 4589999999999987766677889999999
Q ss_pred EEeCCC---hhhHHHHH
Q 028037 178 MFDLTS---RCTLNSIV 191 (215)
Q Consensus 178 vfdit~---~~Sf~~i~ 191 (215)
|||.++ .++++.+.
T Consensus 81 V~d~~~~~~~~~~~~~~ 97 (164)
T cd04171 81 VVAADEGIMPQTREHLE 97 (164)
T ss_pred EEECCCCccHhHHHHHH
Confidence 999987 55555443
No 145
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.60 E-value=7.5e-16 Score=117.82 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=60.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCC-----CCCccchhhccCCcEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-----RSFDHVPIACKDAVAI 175 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e-----~~~~~~~~~~~~a~~i 175 (215)
+||+++|++|||||||+++|.++.+. +.+|.+.++. + .+|||+|+. .|..+.. .++++|++
T Consensus 1 ~kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred CeEEEECCCCCCHHHHHHHHcCCccc-cccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 38999999999999999999988763 3345444432 1 689999983 2333333 47899999
Q ss_pred EEEEeCCChhhHHHHHHHHHH
Q 028037 176 LFMFDLTSRCTLNSIVGWYSE 196 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~ 196 (215)
++|||++++.||.. ..|.+.
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~ 86 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASI 86 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHh
Confidence 99999999999876 355543
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.59 E-value=1.5e-14 Score=108.56 Aligned_cols=106 Identities=22% Similarity=0.420 Sum_probs=86.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-C-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCC
Q 028037 105 LLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT 182 (215)
Q Consensus 105 llGd~~vGKTSLi~r~~~~~f-~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit 182 (215)
++|.+|+|||||++++.+... . ...++. .++........+....+.+||++|+..+......+++.+|++++|||.+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999887 4 444454 7877777777778899999999999988888788899999999999999
Q ss_pred ChhhHHHHHHHHH-HHHhHCCCCceEEEEe
Q 028037 183 SRCTLNSIVGWYS-EARKWNQVTKQSLFFH 211 (215)
Q Consensus 183 ~~~Sf~~i~~wl~-~i~~~~~~~~piIlVa 211 (215)
+..+++....|.. ........+.|+++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 109 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVG 109 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEE
Confidence 9999999998832 2333334567766664
No 147
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.59 E-value=1.5e-14 Score=110.27 Aligned_cols=111 Identities=20% Similarity=0.310 Sum_probs=93.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
...+||.++|-.++|||||++++.......-.+|.|++. +.+..+| .+.+++||.+||...+..|..||.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~--k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT--KKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcce--EEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 458999999999999999999999777667788999774 4555554 5899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
|.|.+|+.-|+++..-+-++..... ..+|+++.|
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfa 126 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFA 126 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehh
Confidence 9999999999999876666654332 568887765
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.57 E-value=1.7e-14 Score=112.67 Aligned_cols=83 Identities=8% Similarity=0.026 Sum_probs=65.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
.|+++|++|+|||||+++|.++++. .+.++...++....+..+ +....+.+|||+|++.|..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 4899999999999999999999887 333333323322333333 24678999999999999888888899999999999
Q ss_pred eCCCh
Q 028037 180 DLTSR 184 (215)
Q Consensus 180 dit~~ 184 (215)
|.++.
T Consensus 82 d~~~~ 86 (168)
T cd01887 82 AADDG 86 (168)
T ss_pred ECCCC
Confidence 99984
No 149
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.57 E-value=2.9e-14 Score=129.27 Aligned_cols=106 Identities=15% Similarity=0.271 Sum_probs=82.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCC--CCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc--------chhh
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIA 168 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f--~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~--------~~~~ 168 (215)
..+||+++|++|||||||++++++..+ ....+.+..++....+.+++. .+.+|||+|+.++... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 358999999999999999999998764 345566667777777888764 4689999999776542 2457
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 169 ~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++++|++++|||.+++.+++.. |+.++.. .+.|+++|.
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~ 317 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVL 317 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEE
Confidence 8999999999999999998876 8777653 356765553
No 150
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.55 E-value=2.8e-14 Score=125.91 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=80.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC--CCccch------hhcc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVP------IACK 170 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~--~~~~~~------~~~~ 170 (215)
.++|+++|.++||||||++++.+.++. ...+....++....+.+++ ...+.+|||+|..+ ...+.. .++.
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~ 267 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATLEEVR 267 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHHHHHH
Confidence 389999999999999999999998764 3333222455566777743 24789999999732 111111 2478
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++|++++|||.+++.+++.+..|.+.+......+.|+++|.
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~ 308 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVY 308 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 99999999999999999998888777776654567755554
No 151
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.52 E-value=1.2e-13 Score=106.70 Aligned_cols=99 Identities=14% Similarity=0.057 Sum_probs=72.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc------chhhcc--CCcEE
Q 028037 105 LLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIACK--DAVAI 175 (215)
Q Consensus 105 llGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~------~~~~~~--~a~~i 175 (215)
++|++|||||||++++.+..+. .+.+++..+.....+.+++ ..+.+|||+|++.+... ...++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999999988755 5556556666666677765 47899999999887653 556664 99999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++|+|.++.++. ..|..++.+. ++|+++|.
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~~---~~~~iiv~ 108 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLEL---GLPVVVAL 108 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHHc---CCCEEEEE
Confidence 999999986543 3455555442 46655553
No 152
>PRK04213 GTP-binding protein; Provisional
Probab=99.51 E-value=8.4e-15 Score=118.64 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=56.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCC-----------CCCCCccch
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVP 166 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G-----------~e~~~~~~~ 166 (215)
..+||+++|.+|||||||++++.++.+. .+.+++ ++....+.++ .+.+|||+| ++++..++.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 3689999999999999999999998876 444433 3333333333 589999999 456666666
Q ss_pred hhcc-CCcEEEEEEeCCChhhHHHH
Q 028037 167 IACK-DAVAILFMFDLTSRCTLNSI 190 (215)
Q Consensus 167 ~~~~-~a~~iilvfdit~~~Sf~~i 190 (215)
.|+. +++.+.+++++.|..++.++
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~ 106 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEI 106 (201)
T ss_pred HHHHhhhhhheEEEEEEeCcccccc
Confidence 6665 44444333333444444443
No 153
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.51 E-value=2.9e-13 Score=103.97 Aligned_cols=103 Identities=17% Similarity=0.293 Sum_probs=75.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc--------chhhcc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACK 170 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~--------~~~~~~ 170 (215)
+||+++|++|+|||||++++.+..+. ...+++..++....+..++ .++.+|||+|...+... ...++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999988753 3344444455444555543 57899999998776432 234567
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
.+|++++|+|++++.+..+.+.|.. ..+.|+++|.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~ 114 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVL 114 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEE
Confidence 9999999999999998888776554 2456666654
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.50 E-value=1.4e-13 Score=125.90 Aligned_cols=106 Identities=19% Similarity=0.276 Sum_probs=76.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCC--------CCccchhhcc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIACK 170 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~--------~~~~~~~~~~ 170 (215)
.||+++|.+|||||||+++++++.+. ...+.+..+.....+..++. .+.+|||+|++. +......+++
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999988754 33444444444455555554 588999999873 2233456788
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
.+|++|+|||.++..++.. ..|.+.+++ .+.|++||+.
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~N 154 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAAN 154 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEE
Confidence 9999999999999877653 345555543 3578777653
No 155
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.49 E-value=1.9e-13 Score=107.34 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=73.2
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC--Cccc-cceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccc---hhhccCCcE
Q 028037 105 LLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHV---PIACKDAVA 174 (215)
Q Consensus 105 llGd~~vGKTSLi~r~~~~~f~--~~~~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~---~~~~~~a~~ 174 (215)
++|++|||||||++++.+.++. ++.. |...+ ...+.+++ ...+.+|||+|..+ ...+. ..+++++|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPN--LGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCc--ceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 5899999999999999988753 2222 22222 22344441 35689999999743 23332 234678999
Q ss_pred EEEEEeCCCh------hhHHHHHHHHHHHHhHCC-------CCceEEEEe
Q 028037 175 ILFMFDLTSR------CTLNSIVGWYSEARKWNQ-------VTKQSLFFH 211 (215)
Q Consensus 175 iilvfdit~~------~Sf~~i~~wl~~i~~~~~-------~~~piIlVa 211 (215)
+++|+|.++. .+++++..|..++..... .+.|+++|.
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 127 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVL 127 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEE
Confidence 9999999998 689999999998876543 367877665
No 156
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.47 E-value=1.3e-13 Score=125.36 Aligned_cols=116 Identities=19% Similarity=0.246 Sum_probs=93.1
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
.....++|+++||.||||||||..+..++|++..|..-..+... ..+....+...|.|++..++-+.....-.+.||++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP-advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP-ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC-CccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 34567999999999999999999999999997666553332211 22334456689999987777666667778999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhHCC--CCceEEEEee
Q 028037 176 LFMFDLTSRCTLNSIV-GWYSEARKWNQ--VTKQSLFFHI 212 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~-~wl~~i~~~~~--~~~piIlVa~ 212 (215)
.++|++++++|++.+. .|++.+++..+ .++|||||..
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGN 123 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGN 123 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEee
Confidence 9999999999999997 89999998764 5799999853
No 157
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.47 E-value=3.8e-13 Score=122.28 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=79.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCC--CCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc--------chhhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIAC 169 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f--~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~--------~~~~~ 169 (215)
.+||+++|.++||||||++++.+.+. ....+.+..++....+.+++ ..+.+|||+|.+++... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 48999999999999999999998775 34445445566667777766 45799999999876542 23467
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 170 ~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+++|++++|||.+++.++++...|.. ..+.|+++|.
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~ 328 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVL 328 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEE
Confidence 89999999999999999887666654 2456755554
No 158
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.46 E-value=3.4e-13 Score=126.31 Aligned_cols=107 Identities=12% Similarity=0.190 Sum_probs=82.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC-------CCC-Cccc------cceeeeEEEEEEE-----CCeEEEEEEEecCCCCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN-------EQE-RSLQ------MAGLNLINKTLMV-----QGARIAFSIWDVGGDSRS 161 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~-------~f~-~~~~------t~g~~~~~~~v~~-----~~~~~~l~i~Dt~G~e~~ 161 (215)
-+++++|..++|||||+.+|+.. .+. .+.+ ..|.++....+.+ ++..+.++||||+|+++|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 47999999999999999999864 232 2222 2366666555544 567799999999999999
Q ss_pred CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
......+++.+|++|+|||.++..+++....|...+. .++|+++|.
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiVi 129 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVI 129 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEE
Confidence 9889999999999999999999888888877765543 245655443
No 159
>PRK11058 GTPase HflX; Provisional
Probab=99.46 E-value=5.3e-13 Score=120.49 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=78.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC--Cccch------hhccC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDHVP------IACKD 171 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~--~~~~~------~~~~~ 171 (215)
.+|+++|.++||||||++++.+.++. ...+....+.....+.+++. -.+.+|||+|..+. ..++. ..+++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987764 33333344555556666542 25789999998442 22222 23689
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|++|+|+|.+++.+++++..|.+.+......+.|+++|.
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~ 316 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVM 316 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 9999999999999999988766665555444567766654
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.46 E-value=3.6e-13 Score=123.19 Aligned_cols=106 Identities=15% Similarity=0.222 Sum_probs=79.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----------CCccc-h
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHV-P 166 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----------~~~~~-~ 166 (215)
..||+++|.++||||||+++|++.++. ...+++..+.....+.+++.. +.+|||+|..+ |..+. .
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHHH
Confidence 589999999999999999999998763 455566667766777777765 57999999632 22222 2
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
.+++++|++++|||.++..|++++. |+..+.. .+.|+|||+
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~ 329 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAF 329 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEE
Confidence 3568999999999999999998874 5555543 356766654
No 161
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.45 E-value=7e-14 Score=107.17 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=91.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
+..+.++|-..+|||||++....++|. +-.||.|++.+ .+....+.+.+||.+||.+|+.+|..||++.+++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 578999999999999999999999998 67789998854 3446678899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
.|..|++.+...+.-+..+.... =..+|+++..
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLG 129 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLG 129 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEec
Confidence 99999999888876665554433 3678887764
No 162
>PRK15494 era GTPase Era; Provisional
Probab=99.45 E-value=7.6e-13 Score=116.31 Aligned_cols=110 Identities=13% Similarity=0.224 Sum_probs=74.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccc--cceeeeEEEEEEECCeEEEEEEEecCCCCC-CCccch-------h
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVP-------I 167 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~--t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~-~~~~~~-------~ 167 (215)
...+||+++|++|||||||+++|++..+....+ .+..+.....+..++ .++.+|||+|+.+ +..+.. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 456899999999999999999999888752111 111233334555555 4679999999854 333322 2
Q ss_pred hccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeec
Q 028037 168 ACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 168 ~~~~a~~iilvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~~ 213 (215)
++.++|++++|+|.++ +|+++. .|++.++... ..++++++|+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~~--~p~IlViNKi 170 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSLN--IVPIFLLNKI 170 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhcC--CCEEEEEEhh
Confidence 3679999999999654 677775 4666665432 3456666663
No 163
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.42 E-value=1.1e-12 Score=107.84 Aligned_cols=107 Identities=18% Similarity=0.258 Sum_probs=75.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc------------------cccceeeeEEEEEEE-----CCeEEEEEEEecCCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERS------------------LQMAGLNLINKTLMV-----QGARIAFSIWDVGGD 158 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~------------------~~t~g~~~~~~~v~~-----~~~~~~l~i~Dt~G~ 158 (215)
+|+++|..++|||||+.+++...+... ....|..+....+.+ ++..+.+++|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987544311 012233333332222 356789999999999
Q ss_pred CCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE-Eee
Q 028037 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF-FHI 212 (215)
Q Consensus 159 e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl-Va~ 212 (215)
++|......++..+|++++|+|.++..+++. ..|+..+... +.|+++ ++|
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~---~~p~iiviNK 132 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE---GLPIVLVINK 132 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCEEEEEEC
Confidence 9998888888999999999999998877654 4555555432 356544 444
No 164
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=1.2e-12 Score=118.38 Aligned_cols=103 Identities=18% Similarity=0.254 Sum_probs=74.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC--------Cccchhhcc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPIACK 170 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~--------~~~~~~~~~ 170 (215)
.||+++|.+|||||||++++.+.+.. ...+.+..+.....+.+++ ..+.+|||+|++.. ......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999988753 3344444455555666666 77999999999872 222345678
Q ss_pred CCcEEEEEEeCCChhhHH--HHHHHHHHHHhHCCCCceEEEEe
Q 028037 171 DAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 171 ~a~~iilvfdit~~~Sf~--~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++|++|+|+|.++..+.. .+..|+.+. +.|+++|+
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~ 116 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVV 116 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEE
Confidence 999999999999864443 334555432 56776664
No 165
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.42 E-value=1.4e-12 Score=114.40 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=78.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchhh---ccCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIA---CKDA 172 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~~---~~~a 172 (215)
..|.|+|.++||||||++++...+.. ..++.+..+...-.+.++ ...++.+||++|..+ ...+...| +..+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 47899999999999999999976544 333322222222334442 234689999999743 22344444 4579
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ--VTKQSLFFH 211 (215)
Q Consensus 173 ~~iilvfdit~~~Sf~~i~~wl~~i~~~~~--~~~piIlVa 211 (215)
+++++|+|+++.+++++++.|.+++..+.+ .+.|++||+
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~ 278 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVL 278 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEE
Confidence 999999999999899999999999988764 357766665
No 166
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.41 E-value=2.3e-12 Score=112.78 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=78.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchhhcc---CC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIACK---DA 172 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~~~~---~a 172 (215)
..|.++|.++||||||++++...+.. ..++.+..+...-.+.+++ ..++.|||++|..+ ...+...|++ .+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 58999999999999999999987643 3222111222223344443 36789999999853 2245555544 69
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037 173 VAILFMFDLTSR---CTLNSIVGWYSEARKWNQ--VTKQSLFFH 211 (215)
Q Consensus 173 ~~iilvfdit~~---~Sf~~i~~wl~~i~~~~~--~~~piIlVa 211 (215)
+++++|+|+++. ++++++..|.+++..+.. .+.|++||+
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~ 280 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVL 280 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEE
Confidence 999999999987 789999999999988753 357766665
No 167
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.40 E-value=1.9e-12 Score=99.50 Aligned_cols=102 Identities=20% Similarity=0.217 Sum_probs=68.2
Q ss_pred EEEcCCCCCHHHHHHHHhcCCC--CCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc--------cchhhccCCc
Q 028037 104 SLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIACKDAV 173 (215)
Q Consensus 104 vllGd~~vGKTSLi~r~~~~~f--~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~--------~~~~~~~~a~ 173 (215)
+++|.+|||||||++++.+... ....+.+..+........++ ..+.+|||+|.+.+.. ....+++++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999998753 23333333344444444444 6789999999988654 2345678999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 174 AILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 174 ~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++++|+|..+..+.... ...+.+++. +.|+++|.
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~ 112 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVV 112 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEE
Confidence 99999999886655443 222333332 36766654
No 168
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.40 E-value=1.7e-12 Score=103.59 Aligned_cols=106 Identities=13% Similarity=0.158 Sum_probs=69.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----------CCccch
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVP 166 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----------~~~~~~ 166 (215)
....+|+++|++|+|||||++++.+..+. .+.++.|.......+..++ .+.+|||+|... +..+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 44689999999999999999999998754 4444444433322333332 589999999532 223334
Q ss_pred hhccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037 167 IACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF 210 (215)
Q Consensus 167 ~~~~~---a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV 210 (215)
.|++. ++++++|+|.+++-+..+.. ++..+.. .+.|+++|
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---~~~pviiv 135 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---RGIPVLIV 135 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCCEEEE
Confidence 45553 57999999999876655553 3334433 24666554
No 169
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.37 E-value=8.7e-12 Score=97.01 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=70.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc----------c-ch
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----------H-VP 166 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~----------~-~~ 166 (215)
.++|+++|++|+|||||++++.+..+. ...+....+.....+..++. .+.+|||+|..+... . ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 478999999999999999999987643 33333333443344555554 478999999764311 1 12
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
.++.++|++++|+|.+++.++.... ++..+.. .+.|+++|.
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~ 120 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVV 120 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEE
Confidence 3467899999999999998876643 3333332 235655443
No 170
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.37 E-value=3e-12 Score=101.54 Aligned_cols=106 Identities=10% Similarity=0.070 Sum_probs=73.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcc-cc--------------ceeeeEEEEEEECCeEEEEEEEecCCCCCCCccch
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSL-QM--------------AGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP 166 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~-~t--------------~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~ 166 (215)
+|+++|+.|+|||||++.+.+..+.... .. .+.........++.....+.+|||+|+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999988776222 11 11111111222222356899999999999888888
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
.+++.+|++++|+|.++..+.+. ..++..+.+ .+.|+++|.
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~ 121 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAI 121 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEE
Confidence 89999999999999998765543 345555544 346655553
No 171
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.37 E-value=4.2e-12 Score=108.66 Aligned_cols=61 Identities=13% Similarity=0.303 Sum_probs=50.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-C----------ccccceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-R----------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~----------~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e 159 (215)
..++|+++|++|+|||||++++++..+. . ..+|++.+.....+..+|..+++.+|||+|-.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfg 74 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFG 74 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcc
Confidence 3689999999999999999999998876 2 23455666666777778888999999999943
No 172
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.36 E-value=4e-12 Score=94.33 Aligned_cols=82 Identities=16% Similarity=0.094 Sum_probs=66.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Ccc-ccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~-~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
+|++++|+.|||||+|+.+|.++.|. .+. ++.+ +......+++.++++++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 59999999999999999999888886 333 3333 334456678899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
||.++++||+++ |.+.+....+.+.|+++++
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~ 84 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGG 84 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEe
Confidence 999999999887 9988877666678877765
No 173
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=5.1e-13 Score=105.01 Aligned_cols=110 Identities=20% Similarity=0.232 Sum_probs=89.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC------CCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhc
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGN------EQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC 169 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~------~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~ 169 (215)
...+.++++|..++|||+|+.+.... ... .-.+|+|.+.. ++.++ ...+.+||.+||+..+.+|..||
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~--~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVC--NAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeec--cceeEEEEcCChHHHHHHHHHHH
Confidence 44688999999999999999987643 221 34568888866 44454 46789999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 170 ~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
..++++|+++|.+|++-|+..+.-++.+..+. ..++|+++.|
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~la 133 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLA 133 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhc
Confidence 99999999999999999999987777775544 3789987765
No 174
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.36 E-value=3.7e-12 Score=102.72 Aligned_cols=93 Identities=13% Similarity=0.112 Sum_probs=61.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC----CCC-Cc-----cccceeeeEEEEEE----------ECCeEEEEEEEecCCCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN----EQE-RS-----LQMAGLNLINKTLM----------VQGARIAFSIWDVGGDSR 160 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~----~f~-~~-----~~t~g~~~~~~~v~----------~~~~~~~l~i~Dt~G~e~ 160 (215)
++|+++|+.++|||||+++|++. .+. .. ..|.+..+....+. .++....+++|||+|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 48999999999999999999972 222 11 12444444433333 123468899999999865
Q ss_pred CCccchhhccCCcEEEEEEeCCChhhHHHHHHH
Q 028037 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193 (215)
Q Consensus 161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~w 193 (215)
+..........+|++++|+|.++..+.+....|
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~ 113 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECL 113 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHH
Confidence 432222234567999999999986555444433
No 175
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.34 E-value=8.2e-12 Score=106.32 Aligned_cols=102 Identities=14% Similarity=0.145 Sum_probs=69.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC---CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc-c-------chhhcc
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-H-------VPIACK 170 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~---~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~-~-------~~~~~~ 170 (215)
+|+++|.+|||||||++++++..+. ....|+.... ..+...+ ..++.+|||+|..+... + ...++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i--~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI--SGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE--EEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999999998764 2222443222 2233322 35689999999865321 1 234578
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++|++++|+|.++..+++ ..+++.+.. .+.|+++|.
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~ 114 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTR 114 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEE
Confidence 999999999999988775 445555544 346755553
No 176
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.33 E-value=1e-11 Score=116.08 Aligned_cols=86 Identities=9% Similarity=0.044 Sum_probs=68.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
....+|+++|..++|||||+++|.+.++. .+.+.+..++....+..++. ..+.+|||+|++.|..++..++..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 34578999999999999999999998887 44333333444445555432 27899999999999999988999999999
Q ss_pred EEEeCCCh
Q 028037 177 FMFDLTSR 184 (215)
Q Consensus 177 lvfdit~~ 184 (215)
+|||.++.
T Consensus 164 LVVda~dg 171 (587)
T TIGR00487 164 LVVAADDG 171 (587)
T ss_pred EEEECCCC
Confidence 99999873
No 177
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.33 E-value=1.8e-11 Score=110.36 Aligned_cols=106 Identities=19% Similarity=0.237 Sum_probs=74.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc-----------
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV----------- 165 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~----------- 165 (215)
..+||+++|.++||||||++++++.+.. ...+.+..+.....+..++. .+.+|||+|..++....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 4589999999999999999999987643 33343334444445555554 68899999987654332
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF 210 (215)
Q Consensus 166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV 210 (215)
..+++.+|++++|+|.++..+.+... ++..+.+ .+.|+|+|
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv 289 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIV 289 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEE
Confidence 23578999999999999988877754 4444433 24565554
No 178
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.32 E-value=7.8e-12 Score=100.40 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=60.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCC----------CCCccchh
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----------RSFDHVPI 167 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e----------~~~~~~~~ 167 (215)
...||+++|++|||||||+++++++++. .+.++.|.......... ..++.||||+|.. ++..+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 4689999999999999999999998765 55555554332222222 3679999999953 23334455
Q ss_pred hccCC---cEEEEEEeCCChhhHH
Q 028037 168 ACKDA---VAILFMFDLTSRCTLN 188 (215)
Q Consensus 168 ~~~~a---~~iilvfdit~~~Sf~ 188 (215)
|++.+ +++++++|.+++.+..
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~ 123 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKEL 123 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHH
Confidence 55544 6788889988765543
No 179
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.32 E-value=1.7e-11 Score=102.20 Aligned_cols=112 Identities=19% Similarity=0.232 Sum_probs=72.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEE-CCeEEEEEEEecCCCCCCCc-----cchhhccCCcEE
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFD-----HVPIACKDAVAI 175 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~-~~~~~~l~i~Dt~G~e~~~~-----~~~~~~~~a~~i 175 (215)
||+++|..++||||+.+-...+-.+......|.......-.+ ....+.+++||++||..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 899999999999999998887655422223333332223333 23457899999999987644 346678999999
Q ss_pred EEEEeCCChhhHHHH---HHHHHHHHhHCCCCceEEEEeec
Q 028037 176 LFMFDLTSRCTLNSI---VGWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 176 ilvfdit~~~Sf~~i---~~wl~~i~~~~~~~~piIlVa~~ 213 (215)
|+|||+.+.+-.+.+ ...++.+.++.+.-.--++++|+
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~ 121 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKM 121 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-C
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeec
Confidence 999999965543343 46666777777655667888875
No 180
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.31 E-value=7.6e-12 Score=104.79 Aligned_cols=107 Identities=11% Similarity=0.145 Sum_probs=76.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC--------------CCcc---ccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQ--------------ERSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f--------------~~~~---~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~ 164 (215)
+|.++|..|+|||||+++++...- .++. ...|..+......++....++++|||+|+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 488999999999999999975310 0111 12244444444555555688999999999999888
Q ss_pred chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE-Eee
Q 028037 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF-FHI 212 (215)
Q Consensus 165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl-Va~ 212 (215)
...+++.+|++++|+|.++..+. ....|++.+++. ++|+++ ++|
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK 125 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNK 125 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEEC
Confidence 88899999999999999987553 345666666553 456444 444
No 181
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.31 E-value=2.3e-11 Score=93.64 Aligned_cols=84 Identities=19% Similarity=0.189 Sum_probs=58.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-C-ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc--------cchhh
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-R-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIA 168 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~-~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~--------~~~~~ 168 (215)
...+|+++|.+|+|||||++++.+.++. . ..+....... ..........+.+|||+|...... .....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRI--RGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA 79 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceE--EEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence 3679999999999999999999987654 1 1111111111 111233357899999999875433 22345
Q ss_pred ccCCcEEEEEEeCCCh
Q 028037 169 CKDAVAILFMFDLTSR 184 (215)
Q Consensus 169 ~~~a~~iilvfdit~~ 184 (215)
+..+|++++|+|.++.
T Consensus 80 ~~~~d~i~~v~d~~~~ 95 (168)
T cd04163 80 LKDVDLVLFVVDASEP 95 (168)
T ss_pred HHhCCEEEEEEECCCc
Confidence 7889999999999987
No 182
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.29 E-value=3.5e-11 Score=108.48 Aligned_cols=108 Identities=12% Similarity=0.158 Sum_probs=77.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchhhc---c
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---K 170 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~~~---~ 170 (215)
..|.++|.++||||||++++.+.+.. ..++ |...++. .+.++ ....+.+||++|..+ ...+...|+ .
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG--~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhie 235 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG--VVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIE 235 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE--EEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHh
Confidence 48999999999999999999987644 3233 2232322 33333 135689999999743 333555554 4
Q ss_pred CCcEEEEEEeCCCh---hhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037 171 DAVAILFMFDLTSR---CTLNSIVGWYSEARKWNQ--VTKQSLFFH 211 (215)
Q Consensus 171 ~a~~iilvfdit~~---~Sf~~i~~wl~~i~~~~~--~~~piIlVa 211 (215)
.++++++|+|+++. ++++++..|.+++..+.. .+.|++||+
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~ 281 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVA 281 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEE
Confidence 58999999999865 789999999999988764 367766665
No 183
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.29 E-value=1.8e-11 Score=110.33 Aligned_cols=102 Identities=21% Similarity=0.307 Sum_probs=70.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCC--------CCccchhhccC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIACKD 171 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~--------~~~~~~~~~~~ 171 (215)
||+++|.+|||||||++++.+.... ...+.+..+.....+..++. .+.+|||+|.+. +......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 6899999999999999999987753 33343334444455555554 599999999743 33345567789
Q ss_pred CcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEe
Q 028037 172 AVAILFMFDLTSRCTLNS--IVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 172 a~~iilvfdit~~~Sf~~--i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|++++|+|.++..+... +..|+. + .+.|+++|+
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~---~---~~~piilVv 114 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLR---K---SGKPVILVA 114 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH---H---hCCCEEEEE
Confidence 999999999988654433 334443 3 246666654
No 184
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.28 E-value=5.4e-11 Score=99.35 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=70.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC----c---cchhhccCCc
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----D---HVPIACKDAV 173 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~----~---~~~~~~~~a~ 173 (215)
+|+++|.+|+|||||++++.+.... ..++....+.....+.+++ ..+++||++|+.+.. . ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 7899999999999999999987643 3333222233334455554 578999999986533 1 2235689999
Q ss_pred EEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEE
Q 028037 174 AILFMFDLTSRC-TLNSIVGWYSEARKWNQVTKQSLFF 210 (215)
Q Consensus 174 ~iilvfdit~~~-Sf~~i~~wl~~i~~~~~~~~piIlV 210 (215)
++++|+|.++++ ..+.+.+.+++..-..+...|.+.+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~ 117 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITI 117 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEE
Confidence 999999999865 4555555555442222333454443
No 185
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.27 E-value=1.9e-11 Score=114.32 Aligned_cols=104 Identities=17% Similarity=0.136 Sum_probs=73.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Cc----cccceeeeEEEEEE------------ECCeEEEEEEEecCCCCCCCc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RS----LQMAGLNLINKTLM------------VQGARIAFSIWDVGGDSRSFD 163 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~----~~t~g~~~~~~~v~------------~~~~~~~l~i~Dt~G~e~~~~ 163 (215)
--|+++|..++|||||++++.+..+. .. .+++|..+...... ++.....+.+|||+|++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 35899999999999999999988776 21 22345443322110 000112388999999999999
Q ss_pred cchhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 164 HVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 164 ~~~~~~~~a~~iilvfdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++..+++.+|++++|||.++ +++++.+..+ +. .++|+++++
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~---~~vpiIVv~ 128 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YKTPFVVAA 128 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH---cCCCEEEEE
Confidence 99999999999999999997 6777766533 21 256766654
No 186
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.27 E-value=4e-11 Score=115.06 Aligned_cols=106 Identities=10% Similarity=0.053 Sum_probs=76.9
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
..+...|+++|..++|||||+++|..+.+. .+...+..+.....+.+++ ..++||||+|++.|..++..++..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 345678999999999999999999988776 3333332333333455554 5689999999999999999889999999
Q ss_pred EEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 176 LFMFDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
|||||.++ +++++.+. .+. ..++|+||+.
T Consensus 365 ILVVdAddGv~~qT~e~i~----~a~---~~~vPiIVvi 396 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAIN----HAK---AAGVPIIVAI 396 (787)
T ss_pred EEEEECCCCCCHhHHHHHH----HHH---hcCCcEEEEE
Confidence 99999998 45544432 122 2457765554
No 187
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.26 E-value=3.3e-11 Score=112.79 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=70.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc---CCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG---NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~---~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
+.|+++|..++|||||+++|.+ +.+. ++..++..++....+..++ ..+.+||++|+++|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 3589999999999999999996 3444 4444555565555566655 78999999999999877778889999999
Q ss_pred EEEeCCC---hhhHHHHH
Q 028037 177 FMFDLTS---RCTLNSIV 191 (215)
Q Consensus 177 lvfdit~---~~Sf~~i~ 191 (215)
+|+|.++ +++++.+.
T Consensus 79 LVVDa~~G~~~qT~ehl~ 96 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA 96 (581)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 9999998 66766653
No 188
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.26 E-value=2.3e-11 Score=115.86 Aligned_cols=106 Identities=9% Similarity=0.073 Sum_probs=77.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
...+|+++|..++|||||++++....+. .... |.....+...+..++....+.+|||+|++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 4579999999999999999999988776 3322 222223333344445678999999999999999999999999999
Q ss_pred EEEEeCCCh---hhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 176 LFMFDLTSR---CTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~~---~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
|+|+|.++. ++++.+.. +. ..++|+|++.
T Consensus 323 ILVVDA~dGv~~QT~E~I~~----~k---~~~iPiIVVi 354 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAINY----IQ---AANVPIIVAI 354 (742)
T ss_pred EEEEECcCCCChhhHHHHHH----HH---hcCceEEEEE
Confidence 999999884 55544432 22 2457866654
No 189
>PRK10218 GTP-binding protein; Provisional
Probab=99.26 E-value=4.7e-11 Score=111.96 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=83.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc--CCCCCc-------------cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG--NEQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~--~~f~~~-------------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~ 164 (215)
-.||+++|..++|||||+.+|+. +.|... ..+.|.++..+...++...+++++|||+|+.+|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 36899999999999999999996 444321 224577777777777777899999999999999999
Q ss_pred chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII 213 (215)
Q Consensus 165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~ 213 (215)
+..+++.+|++|+|+|.++....+ .+.++..+... ++| +++++|+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~~---gip~IVviNKi 130 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFAY---GLKPIVVINKV 130 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHHc---CCCEEEEEECc
Confidence 999999999999999998864333 33444444433 344 5666654
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.26 E-value=4.2e-11 Score=114.58 Aligned_cols=106 Identities=19% Similarity=0.226 Sum_probs=71.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC--------Cccchhh
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPIA 168 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~--------~~~~~~~ 168 (215)
...+|+++|.++||||||++++++..+. ...+.+..+........++ ..+.+|||+|.+.. ......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3578999999999999999999987654 3334333343333333444 46889999998742 2233456
Q ss_pred ccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037 169 CKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 169 ~~~a~~iilvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa 211 (215)
+..+|++|+|+|.++. +.... .|.+.+++ .+.|+|+|+
T Consensus 352 ~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~ 390 (712)
T PRK09518 352 VSLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAV 390 (712)
T ss_pred HHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEE
Confidence 7899999999999874 22332 46666654 457777664
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.25 E-value=3.2e-11 Score=115.40 Aligned_cols=106 Identities=17% Similarity=0.251 Sum_probs=76.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCC--CCccccceeeeEEEEEEECCeEEEEEEEecCCCCC----------CCccc-h
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHV-P 166 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f--~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----------~~~~~-~ 166 (215)
..||+++|.++||||||++++++.++ ....+.+..+.....+.+++.. +.+|||+|..+ |..+. .
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHH
Confidence 47999999999999999999999875 3444544556666667777765 56999999643 11111 2
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
.+++.+|++++|+|.++..+++.+. ++..+.+ .+.|+|||.
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~ 568 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVF 568 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEE
Confidence 3468899999999999999988875 4444433 346766554
No 192
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.23 E-value=8.5e-11 Score=89.22 Aligned_cols=102 Identities=18% Similarity=0.139 Sum_probs=69.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccch-------hhccCCcEE
Q 028037 105 LLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP-------IACKDAVAI 175 (215)
Q Consensus 105 llGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~-------~~~~~a~~i 175 (215)
++|..|+|||||++++.+..+. ........+........+ ....+.+||++|...+..... .++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987555 122222222222333322 156899999999887654443 477899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++|+|.++..+..... |...... .+.|+++|.
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~ 111 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVL 111 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEE
Confidence 9999999998877766 4444433 456655553
No 193
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.23 E-value=3.8e-11 Score=92.71 Aligned_cols=101 Identities=16% Similarity=0.227 Sum_probs=66.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----------CCccchhhcc
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVPIACK 170 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----------~~~~~~~~~~ 170 (215)
+|+++|++|+|||||++.+.++.+. ...++.+.+.....+..++ .+.+||++|... +......|+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 4899999999999999999977666 5555555544444444443 899999999533 3334444554
Q ss_pred ---CCcEEEEEEeCCChhh--HHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 171 ---DAVAILFMFDLTSRCT--LNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 171 ---~a~~iilvfdit~~~S--f~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
..+++++++|.++..+ ...+..|+... +.|+++|.
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~ 117 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVL 117 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEE
Confidence 3568889999987632 23344565543 36755443
No 194
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.23 E-value=6e-11 Score=94.26 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=84.1
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC---------Cc----cccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE---------RS----LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (215)
Q Consensus 95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~---------~~----~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~ 161 (215)
.......||++.|+.++||||++.++.+.... .+ ..|+..||....+ +.+..+.++||+||++|
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQERF 81 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcHHH
Confidence 34566889999999999999999999977631 11 1345566653332 23467899999999999
Q ss_pred CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+.++..+++++++.+++.|.+....| +....++-+..... +|++|.+
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~ 128 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAI 128 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEe
Confidence 99999999999999999999999999 55555555544331 7877654
No 195
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.23 E-value=2.5e-11 Score=95.35 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=55.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc----hhhccCCcEEEE
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV----PIACKDAVAILF 177 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~----~~~~~~a~~iil 177 (215)
||+++|.++||||||++++.+ .+.....+.+.+ +++. .+|||+|+......+ ...++++|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~-~~~~~~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQG-NYTLARKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcC-CCccCccceEEE-------ECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 799999999999999999764 443222233322 2222 269999974322111 223689999999
Q ss_pred EEeCCChhhHHHHHHHHHHH
Q 028037 178 MFDLTSRCTLNSIVGWYSEA 197 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i 197 (215)
|||.++.+++ +..|+.++
T Consensus 71 v~d~~~~~s~--~~~~~~~~ 88 (158)
T PRK15467 71 VHGANDPESR--LPAGLLDI 88 (158)
T ss_pred EEeCCCcccc--cCHHHHhc
Confidence 9999999886 34566554
No 196
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.22 E-value=9.3e-11 Score=99.88 Aligned_cols=107 Identities=9% Similarity=0.106 Sum_probs=73.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC-C-C----------------Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNE-Q-E----------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~-f-~----------------~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e 159 (215)
-+|+++|-.|+|||||+++++... . . ++.+ ..|.++......++...+++++|||+|++
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 469999999999999999997421 0 0 1111 12444555555666667899999999999
Q ss_pred CCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 160 ~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|......+++.+|++++|+|.++...- ....|++.... .++|++++.
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivv 130 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFI 130 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEE
Confidence 9887677788999999999999876432 23344444433 346655443
No 197
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.22 E-value=5.3e-11 Score=111.74 Aligned_cols=108 Identities=11% Similarity=0.186 Sum_probs=79.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC--CCC---------Ccc---ccceeeeEEEEEEE-----CCeEEEEEEEecCCCCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN--EQE---------RSL---QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSRS 161 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~--~f~---------~~~---~t~g~~~~~~~v~~-----~~~~~~l~i~Dt~G~e~~ 161 (215)
-+++++|..++|||||+.+|+.. .+. ++. .+.|.++....+.+ ++..+.+++|||+|+++|
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 48999999999999999999863 111 111 13355555444433 566899999999999999
Q ss_pred CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE-Eee
Q 028037 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF-FHI 212 (215)
Q Consensus 162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl-Va~ 212 (215)
...+..+++.+|++|+|+|.++..+.+....|..... .++|+|+ ++|
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNK 135 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNK 135 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEEC
Confidence 9888899999999999999999877777766765432 2456444 444
No 198
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.3e-11 Score=94.52 Aligned_cols=109 Identities=21% Similarity=0.301 Sum_probs=88.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
...+++++|-.|+|||++..++.-++...+.||+|++.. ++ ..++.++++||.+||...+..|+.||.+.|++|+|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve--~v--~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVE--TV--PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcc--cc--ccccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence 578999999999999999999999998888899998754 33 34779999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037 179 FDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa 211 (215)
.|.+|++...... ..+..+++..-.+..++++|
T Consensus 93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~a 126 (182)
T KOG0072|consen 93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFA 126 (182)
T ss_pred EeccchhhhhhhHHHHHHHhccHhhcCceEEEEe
Confidence 9999998777665 45555544332334444444
No 199
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.21 E-value=3.5e-10 Score=83.85 Aligned_cols=103 Identities=12% Similarity=0.209 Sum_probs=64.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc---------cchhhcc
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIACK 170 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~---------~~~~~~~ 170 (215)
+|+++|.+|+|||||++.+++.... ...+..........+.+++.. +.++||+|-..-.. .....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999986432 222222222223455566655 46999999754311 1122247
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
.+|++++|+|.+++.. +.....+++++ .+.|+++|.
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~ 114 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVL 114 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEE
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEE
Confidence 8999999999877422 22334444442 456666653
No 200
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.19 E-value=1.2e-10 Score=94.53 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=61.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-Ccccccee-eeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhh-----ccC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGL-NLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIA-----CKD 171 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~-~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~-----~~~ 171 (215)
.+||+++|++|||||||++.+.+..+. ....+++. +.......+. .....+.+||++|..........| +.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 379999999999999999999987665 33333331 1110111111 112368999999987544333333 567
Q ss_pred CcEEEEEEeCCChhhHHHHH-HHHHHHHhH
Q 028037 172 AVAILFMFDLTSRCTLNSIV-GWYSEARKW 200 (215)
Q Consensus 172 a~~iilvfdit~~~Sf~~i~-~wl~~i~~~ 200 (215)
+|+++++.| .+|.+.. .|++.+++.
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~ 106 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQCM 106 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHHh
Confidence 899888732 2455554 677777665
No 201
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.18 E-value=1.8e-10 Score=108.12 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=71.0
Q ss_pred cCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc------chhhc--cCCcEEEE
Q 028037 107 GDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIAC--KDAVAILF 177 (215)
Q Consensus 107 Gd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~------~~~~~--~~a~~iil 177 (215)
|++|||||||++++.+..+. .+.+.+..+.....+..++. ++++|||+|++++... ...|+ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999998876 66676667776666777654 5799999999987654 33443 37899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|+|.++.+ +-..|..++.+ .+.|+++|..
T Consensus 79 VvDat~le---r~l~l~~ql~~---~~~PiIIVlN 107 (591)
T TIGR00437 79 VVDASNLE---RNLYLTLQLLE---LGIPMILALN 107 (591)
T ss_pred EecCCcch---hhHHHHHHHHh---cCCCEEEEEe
Confidence 99998743 22344444433 4578776654
No 202
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.17 E-value=1.7e-10 Score=108.08 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=73.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCcc-----ccceeeeEEEEEEE--CCeEE----------EEEEEecCCCCCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-----QMAGLNLINKTLMV--QGARI----------AFSIWDVGGDSRS 161 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~-----~t~g~~~~~~~v~~--~~~~~----------~l~i~Dt~G~e~~ 161 (215)
+...|+++|..++|||||++++.+..+.... +++|..+....... .+... .+.+|||+|++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 4557999999999999999999866543222 24454433221100 11111 2689999999999
Q ss_pred CccchhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 162 FDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 162 ~~~~~~~~~~a~~iilvfdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
..++...+..+|++++|+|.++ +++++.+..+. . .++|++++.
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~----~---~~vpiIvvi 130 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINILK----R---RKTPFVVAA 130 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHH----H---cCCCEEEEE
Confidence 9988888899999999999998 78887765332 2 356765554
No 203
>PRK00089 era GTPase Era; Reviewed
Probab=99.16 E-value=2.5e-10 Score=98.05 Aligned_cols=83 Identities=16% Similarity=0.232 Sum_probs=57.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccc-cceeeeEEEEEEECCeEEEEEEEecCCCCCCCc--------cch
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVP 166 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~--------~~~ 166 (215)
+..-.|+++|.+|||||||++++++..+. ...+ |+.... ..+... ...++.+|||+|...... ...
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i--~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRI--RGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAW 79 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccE--EEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence 34668999999999999999999988764 2122 222221 122222 237899999999765432 223
Q ss_pred hhccCCcEEEEEEeCCC
Q 028037 167 IACKDAVAILFMFDLTS 183 (215)
Q Consensus 167 ~~~~~a~~iilvfdit~ 183 (215)
..+.++|++++|+|.++
T Consensus 80 ~~~~~~D~il~vvd~~~ 96 (292)
T PRK00089 80 SSLKDVDLVLFVVDADE 96 (292)
T ss_pred HHHhcCCEEEEEEeCCC
Confidence 35678999999999998
No 204
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.15 E-value=2.8e-10 Score=104.21 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=74.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchh---hccCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPI---ACKDA 172 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~---~~~~a 172 (215)
.+|.|+|.++||||||++++.+.+.. ..++.+..+...-.+.+++ ..+.+||++|..+ ...+... ++..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 58999999999999999999987654 3333222222233444444 5799999999632 2222222 35679
Q ss_pred cEEEEEEeCCC----hhhHHHHHHHHHHHHhHCC-----------CCceEEEEe
Q 028037 173 VAILFMFDLTS----RCTLNSIVGWYSEARKWNQ-----------VTKQSLFFH 211 (215)
Q Consensus 173 ~~iilvfdit~----~~Sf~~i~~wl~~i~~~~~-----------~~~piIlVa 211 (215)
+++|+|+|+++ ++.++.+..|.+++.++.. .+.|+|||+
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVl 291 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVL 291 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEE
Confidence 99999999986 4577777888888876642 356766654
No 205
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.15 E-value=1.6e-10 Score=95.90 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=72.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC--C----------Ccc---ccceeeeEEE--EEEEC--------CeEEEEEEEecC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQ--E----------RSL---QMAGLNLINK--TLMVQ--------GARIAFSIWDVG 156 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f--~----------~~~---~t~g~~~~~~--~v~~~--------~~~~~l~i~Dt~ 156 (215)
+|.++|..+.|||||+.+++...- . +.. ...|...... .+..+ +..+.+++|||+
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 589999999999999999974321 1 000 0112222211 12222 457899999999
Q ss_pred CCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII 213 (215)
Q Consensus 157 G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~ 213 (215)
|+++|......+++.+|++++|||+++..+.+....|.. +.. .++| +++++|+
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~~---~~~p~ilviNKi 135 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-ALK---ERVKPVLVINKI 135 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HHH---cCCCEEEEEECC
Confidence 999999999999999999999999999877665333332 322 2344 5555654
No 206
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.13 E-value=1.7e-10 Score=104.34 Aligned_cols=89 Identities=10% Similarity=0.157 Sum_probs=64.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhc--CCCC-C-----------------------------ccccceeeeEEEEEEEC
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVG--NEQE-R-----------------------------SLQMAGLNLINKTLMVQ 144 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~--~~f~-~-----------------------------~~~t~g~~~~~~~v~~~ 144 (215)
....++|+++|..++|||||+.+++. +... . ....+..+... ..+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKFE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEEc
Confidence 34578999999999999999999985 2221 0 01122233333 3344
Q ss_pred CeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhH
Q 028037 145 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL 187 (215)
Q Consensus 145 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf 187 (215)
...+.+.|||++|+++|.......+.++|++++|+|.++.+++
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~ 124 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE 124 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc
Confidence 4457899999999998866555567899999999999998754
No 207
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.13 E-value=2.3e-10 Score=107.24 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=81.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc--CCCCCc-------------cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccch
Q 028037 102 KISLLGDCQIGKTSFVVKYVG--NEQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP 166 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~--~~f~~~-------------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~ 166 (215)
+|+++|..++|||||+.+++. +.|... ....|.++..+...++...++++||||+|+++|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 689999999999999999986 344311 11336666666666666678999999999999988888
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII 213 (215)
Q Consensus 167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~ 213 (215)
.+++.+|++++|+|.++. .+.....|+..+.... +| +++++|+
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~~---ip~IVviNKi 126 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALELG---LKPIVVINKI 126 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHCC---CCEEEEEECC
Confidence 899999999999999874 3455567777776543 44 5566654
No 208
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.12 E-value=3.7e-10 Score=102.03 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=60.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC---------------------------Cccc---cceeeeEEEEEEECCeE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE---------------------------RSLQ---MAGLNLINKTLMVQGAR 147 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~---------------------------~~~~---t~g~~~~~~~v~~~~~~ 147 (215)
...++|+++|..++|||||+.+++...-. +..+ ..|.........++...
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 45789999999999999999999832110 0000 11322222233444456
Q ss_pred EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 148 ~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~ 184 (215)
+++.+|||+|+++|.......+..+|++++|+|.++.
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~ 120 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA 120 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC
Confidence 7899999999998865544556899999999999974
No 209
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.12 E-value=6.2e-10 Score=100.62 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=72.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc----------c-
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------V- 165 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~----------~- 165 (215)
..+||+++|.+++|||||++++++.+.. ...+.+..+.....+..++ ..+.+|||+|..+...+ .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 4699999999999999999999976532 4444333444334444555 45789999997543221 1
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE-EEEee
Q 028037 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQS-LFFHI 212 (215)
Q Consensus 166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~pi-IlVa~ 212 (215)
..+++.+|++|+|+|.++..+.++.. +...+.+. +.|+ ++++|
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~---~~~~ivv~NK 293 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALEA---GRALVIVVNK 293 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc---CCcEEEEEEC
Confidence 23568899999999999988877654 33334332 3454 44444
No 210
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.11 E-value=1.5e-09 Score=85.28 Aligned_cols=106 Identities=11% Similarity=0.068 Sum_probs=71.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc------cchhhc--cC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC--KD 171 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~------~~~~~~--~~ 171 (215)
++|+++|.++||||||+|++.+.+.. ..+|.+..+.....+.+++ ..+.+.|++|.-.... +...|+ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999999999999876 6666555566666677766 6689999999543322 223343 58
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeecc
Q 028037 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIII 214 (215)
Q Consensus 172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~~ 214 (215)
.|+++.|.|.++.+.=. ....++.+ -++|+|+|..++
T Consensus 79 ~D~ii~VvDa~~l~r~l---~l~~ql~e---~g~P~vvvlN~~ 115 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---YLTLQLLE---LGIPVVVVLNKM 115 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---HHHHHHHH---TTSSEEEEEETH
T ss_pred CCEEEEECCCCCHHHHH---HHHHHHHH---cCCCEEEEEeCH
Confidence 99999999998854322 33444443 348888876553
No 211
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.10 E-value=9.1e-10 Score=105.96 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=74.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc----------chh
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPI 167 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~----------~~~ 167 (215)
..++|+++|.++||||||++++.+.... ... .|.++..+...++....++++||++|...+... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 3579999999999999999999987664 333 344444444445555678999999999876532 122
Q ss_pred hc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037 168 AC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 168 ~~--~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~ 213 (215)
++ .++|++++|+|.++.+. ...|..++.+. ++|+++|...
T Consensus 80 ~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~---giPvIvVlNK 121 (772)
T PRK09554 80 YILSGDADLLINVVDASNLER---NLYLTLQLLEL---GIPCIVALNM 121 (772)
T ss_pred HHhccCCCEEEEEecCCcchh---hHHHHHHHHHc---CCCEEEEEEc
Confidence 33 47999999999988654 23455566543 4676666543
No 212
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.07 E-value=4.6e-10 Score=91.97 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=56.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-C--------------------------ccc---cceeeeEEEEEEECCeEEEEE
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-R--------------------------SLQ---MAGLNLINKTLMVQGARIAFS 151 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~--------------------------~~~---t~g~~~~~~~v~~~~~~~~l~ 151 (215)
+|+++|..++|||||+++++...-. . ..+ ..|.........+.....++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999743211 1 000 011111112222222345788
Q ss_pred EEecCCCCCCCccchhhccCCcEEEEEEeCCChh
Q 028037 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 185 (215)
Q Consensus 152 i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~ 185 (215)
+|||+|+++|.......+..+|++++|+|.++..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~ 114 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGV 114 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc
Confidence 9999999887655556678999999999998753
No 213
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.07 E-value=9.3e-10 Score=98.44 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=74.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc-cc-eeeeEEEEEEECCeEEEEEEEecCCCCCCC----ccch---hhcc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ-MA-GLNLINKTLMVQGARIAFSIWDVGGDSRSF----DHVP---IACK 170 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~-t~-g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~----~~~~---~~~~ 170 (215)
..|.|+|.++||||||++++.+.+.. ..++ |+ ...+. .+..++ ...+.++|++|..+-. .+.. ..+.
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~G--iv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ 236 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLG--VVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLE 236 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEE--EEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHH
Confidence 37999999999999999999976644 3333 22 32322 333332 2358899999975421 1222 2467
Q ss_pred CCcEEEEEEeCC---ChhhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037 171 DAVAILFMFDLT---SRCTLNSIVGWYSEARKWNQ--VTKQSLFFH 211 (215)
Q Consensus 171 ~a~~iilvfdit---~~~Sf~~i~~wl~~i~~~~~--~~~piIlVa 211 (215)
.++++++|+|++ +.+.++++..|++++..+.. .+.|+|||+
T Consensus 237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVl 282 (390)
T PRK12298 237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVF 282 (390)
T ss_pred hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEE
Confidence 899999999998 66788999999999988753 245655543
No 214
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.06 E-value=2.1e-10 Score=92.13 Aligned_cols=108 Identities=16% Similarity=0.195 Sum_probs=68.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEE-CCeEEEEEEEecCCCCCCCccchh---hccCCcEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPI---ACKDAVAIL 176 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~-~~~~~~l~i~Dt~G~e~~~~~~~~---~~~~a~~ii 176 (215)
--|+++|++|+|||+|..++.++.+..+......+. ...+ +...-.+.+.|++|+++.+..... +...+.++|
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 368999999999999999999997776555442222 1222 234456899999999998764433 478899999
Q ss_pred EEEeCC-ChhhHHHHHHHHHHHHhH---CCCCceEEEEe
Q 028037 177 FMFDLT-SRCTLNSIVGWYSEARKW---NQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit-~~~Sf~~i~~wl~~i~~~---~~~~~piIlVa 211 (215)
+|.|.+ +...+..+.+++-++... ....+||+|++
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIac 119 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIAC 119 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEE
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEE
Confidence 999987 355666666555555332 23567876654
No 215
>PRK13351 elongation factor G; Reviewed
Probab=99.06 E-value=3.3e-10 Score=108.10 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=75.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCC-------------CC-Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNE-------------QE-RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~-------------f~-~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~ 162 (215)
..+|+++|..++|||||+++|+... +. ++.+ ..+.........+.....++++|||+|+.+|.
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 5799999999999999999998531 11 1110 11222222222333346789999999999998
Q ss_pred ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 163 ~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
.....+++.+|++++|+|.++..+++....| ..+.+. ++|+++|.
T Consensus 88 ~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~---~~p~iivi 132 (687)
T PRK13351 88 GEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY---GIPRLIFI 132 (687)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc---CCCEEEEE
Confidence 8888999999999999999998887766555 334332 46655543
No 216
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.03 E-value=8.6e-10 Score=93.70 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=69.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-Ccc------cc----------ceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSL------QM----------AGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~------~t----------~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~ 164 (215)
+|+++|.+|+|||||+++++...-. ... .+ .+.........+.....++++|||+|...|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999743211 000 00 011122222223333478899999999888777
Q ss_pred chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE-Eee
Q 028037 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF-FHI 212 (215)
Q Consensus 165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl-Va~ 212 (215)
...+++.+|++++|+|.++.........|. .+.. .++|+++ ++|
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~---~~~p~iivvNK 125 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE---AGIPRIIFINK 125 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEEC
Confidence 788899999999999999876665444443 3333 2456444 444
No 217
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.02 E-value=1e-09 Score=101.57 Aligned_cols=109 Identities=10% Similarity=0.093 Sum_probs=75.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc--CCC--------------C--Ccc---ccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVG--NEQ--------------E--RSL---QMAGLNLINKTLMVQGARIAFSIWDVGG 157 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~--~~f--------------~--~~~---~t~g~~~~~~~v~~~~~~~~l~i~Dt~G 157 (215)
...+|+++|..++|||||+.+++. +.. . ++. ...|..+......++...+++++|||+|
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 356999999999999999999973 110 0 001 1224455555555555568899999999
Q ss_pred CCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 158 ~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++.|......+++.+|++|+|+|.++.-.- ....++...+. .++|++++.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~i 138 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFI 138 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEE
Confidence 999987777788999999999999885322 23445544433 356755543
No 218
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.02 E-value=1.9e-09 Score=93.98 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=57.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC-Ccc------ccceeeeEEEE---------------EEECC-eEEEEEEEecCCC-
Q 028037 103 ISLLGDCQIGKTSFVVKYVGNEQE-RSL------QMAGLNLINKT---------------LMVQG-ARIAFSIWDVGGD- 158 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~~f~-~~~------~t~g~~~~~~~---------------v~~~~-~~~~l~i~Dt~G~- 158 (215)
|.++|.++||||||++++.+..+. ..+ |+.|..+.... ...++ ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 578999999999999999988754 222 33343332110 11233 3478999999998
Q ss_pred ---CCCCccchhh---ccCCcEEEEEEeCCC
Q 028037 159 ---SRSFDHVPIA---CKDAVAILFMFDLTS 183 (215)
Q Consensus 159 ---e~~~~~~~~~---~~~a~~iilvfdit~ 183 (215)
+++..+...+ ++++|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 5566666665 899999999999973
No 219
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=5.3e-10 Score=87.54 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=87.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
.-|++++|-.++|||||++.+.+++.....||.-.. +..+.+.| ++++.+|.+|+...+..+..|+..+|++++.+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT--SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT--SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccCCCcCCC--hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 569999999999999999999999887666665433 23444544 77999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCC-CCceEE-EEeec
Q 028037 180 DLTSRCTLNSIVGWYSEARKWNQ-VTKQSL-FFHII 213 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~~-~~~piI-lVa~~ 213 (215)
|..|.+-|.+.+.-++.+..... .++|++ +-+|+
T Consensus 96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKI 131 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKI 131 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccc
Confidence 99999999999987777655432 456654 44443
No 220
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.00 E-value=1.3e-09 Score=104.56 Aligned_cols=85 Identities=11% Similarity=0.087 Sum_probs=65.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC---------------CCC-C---ccccceeeeEEEEEEECCeEEEEEEEecCCCCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN---------------EQE-R---SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~---------------~f~-~---~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~ 160 (215)
..+|+++|..++|||||+.+|+.. .+. + ...|+...+.......++..+++++|||+|+.+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 579999999999999999999752 222 1 111344333334444667789999999999999
Q ss_pred CCccchhhccCCcEEEEEEeCCCh
Q 028037 161 SFDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 161 ~~~~~~~~~~~a~~iilvfdit~~ 184 (215)
|.......++.+|++|+|+|..+.
T Consensus 99 f~~~~~~al~~aD~~llVvda~~g 122 (720)
T TIGR00490 99 FGGDVTRAMRAVDGAIVVVCAVEG 122 (720)
T ss_pred cHHHHHHHHHhcCEEEEEEecCCC
Confidence 988788889999999999999874
No 221
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.98 E-value=2.8e-09 Score=98.80 Aligned_cols=110 Identities=10% Similarity=0.072 Sum_probs=76.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc-CCCC-----------------Cc---cccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVG-NEQE-----------------RS---LQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~-~~f~-----------------~~---~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G 157 (215)
...+|+++|..++|||||+.+++. .... ++ ....|..+......++...+++++|||+|
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 357999999999999999999852 1111 11 11235555555666666778999999999
Q ss_pred CCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE-EEee
Q 028037 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL-FFHI 212 (215)
Q Consensus 158 ~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI-lVa~ 212 (215)
+..|......+++.+|++|+|+|.++.- ......+++..+. .++|++ +++|
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNK 141 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNK 141 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEEC
Confidence 9988876777889999999999998741 1223455554443 346655 4444
No 222
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.96 E-value=2.8e-09 Score=86.95 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=58.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC--C-C-Ccc--ccceeeeEEEEEE-----------------------EC--C----
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNE--Q-E-RSL--QMAGLNLINKTLM-----------------------VQ--G---- 145 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~--f-~-~~~--~t~g~~~~~~~v~-----------------------~~--~---- 145 (215)
++|.++|..|+|||||+..+..-. . . +.. .++...+...... .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 368999999999999999986431 1 1 100 0111111110000 00 1
Q ss_pred eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh----hhHHHHHHH
Q 028037 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----CTLNSIVGW 193 (215)
Q Consensus 146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~----~Sf~~i~~w 193 (215)
....+.+|||+|+++|.......+..+|++++|+|.+++ ++++.+..|
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~ 132 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL 132 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH
Confidence 126799999999988766666667788999999999873 445544443
No 223
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.95 E-value=6.2e-09 Score=90.01 Aligned_cols=85 Identities=22% Similarity=0.235 Sum_probs=54.9
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchh-------
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI------- 167 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~------- 167 (215)
+...++|+++|.+||||||++|++++.+.. ...++.+..........+ ..++.++||+|..+.......
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 355799999999999999999999987642 222222222211222234 367999999997764322211
Q ss_pred hc--cCCcEEEEEEeCCC
Q 028037 168 AC--KDAVAILFMFDLTS 183 (215)
Q Consensus 168 ~~--~~a~~iilvfdit~ 183 (215)
+. .+.|++|+|.+++.
T Consensus 113 ~l~~~g~DvVLyV~rLD~ 130 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDA 130 (313)
T ss_pred HhhcCCCCEEEEEeccCc
Confidence 11 26899999976653
No 224
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.90 E-value=1.3e-08 Score=91.20 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=57.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc------cceeeeEEEEE---------------EECC-eEEEEEEEecCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ------MAGLNLINKTL---------------MVQG-ARIAFSIWDVGG 157 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~------t~g~~~~~~~v---------------~~~~-~~~~l~i~Dt~G 157 (215)
+||.++|.++||||||++++.+.++. ..++ +.|..+....+ ..++ ..+.+++||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999988776 3333 22322210000 0122 347899999999
Q ss_pred C----CCCCccchhh---ccCCcEEEEEEeCC
Q 028037 158 D----SRSFDHVPIA---CKDAVAILFMFDLT 182 (215)
Q Consensus 158 ~----e~~~~~~~~~---~~~a~~iilvfdit 182 (215)
- ++...+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 4455566666 78999999999997
No 225
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.89 E-value=1.8e-08 Score=90.42 Aligned_cols=84 Identities=23% Similarity=0.410 Sum_probs=68.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc--------hhh
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIA 168 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~--------~~~ 168 (215)
.-+|++++|.++||||||+|.+.+.+-. ...+.+.-|+-...+.++| +.+.+.||+|-.+..+.. ...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 3589999999999999999999988765 5666555677777888887 568899999987655432 344
Q ss_pred ccCCcEEEEEEeCCCh
Q 028037 169 CKDAVAILFMFDLTSR 184 (215)
Q Consensus 169 ~~~a~~iilvfdit~~ 184 (215)
...||.+++|+|.+.+
T Consensus 294 i~~ADlvL~v~D~~~~ 309 (454)
T COG0486 294 IEEADLVLFVLDASQP 309 (454)
T ss_pred HHhCCEEEEEEeCCCC
Confidence 6899999999999996
No 226
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.87 E-value=1.5e-08 Score=95.55 Aligned_cols=88 Identities=14% Similarity=0.133 Sum_probs=60.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc---CCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 102 KISLLGDCQIGKTSFVVKYVG---NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~---~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
-|.++|..++|||||++++.+ +.+. +....+..+.....+...+ ...+.+||++|+++|.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 478999999999999999985 3333 2212222222222222222 2348999999999986666667889999999
Q ss_pred EEeCCC---hhhHHHH
Q 028037 178 MFDLTS---RCTLNSI 190 (215)
Q Consensus 178 vfdit~---~~Sf~~i 190 (215)
|+|.++ +++.+.+
T Consensus 81 VVda~eg~~~qT~ehl 96 (614)
T PRK10512 81 VVACDDGVMAQTREHL 96 (614)
T ss_pred EEECCCCCcHHHHHHH
Confidence 999987 5665554
No 227
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.84 E-value=2.6e-08 Score=89.24 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=70.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC-c--------cchhhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-D--------HVPIAC 169 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~-~--------~~~~~~ 169 (215)
..|+++|-++||||||.||+++.+.. +..|.+.-|-......+.+.. +.+.||+|-+... . .....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999988766 555533333333455555544 8999999987533 1 223446
Q ss_pred cCCcEEEEEEeCCChhh--HHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 170 KDAVAILFMFDLTSRCT--LNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 170 ~~a~~iilvfdit~~~S--f~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
..||++|||+|...--+ =+.+.+|+. ..+.|+|||+.
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr------~~~kpviLvvN 120 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR------RSKKPVILVVN 120 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH------hcCCCEEEEEE
Confidence 78999999999887433 123334443 14577777653
No 228
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.83 E-value=2.4e-08 Score=89.54 Aligned_cols=88 Identities=10% Similarity=0.172 Sum_probs=61.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC-------CC----C-Ccc---ccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGN-------EQ----E-RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~-------~f----~-~~~---~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~ 161 (215)
....++|+++|-.++|||||+.++.+. .+ . +.. ...|.......+.++....++.+|||+|+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 345789999999999999999999732 01 0 100 11233333344555555678899999999987
Q ss_pred CccchhhccCCcEEEEEEeCCCh
Q 028037 162 FDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 162 ~~~~~~~~~~a~~iilvfdit~~ 184 (215)
..........+|++++|+|.++.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g 111 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDG 111 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCC
Confidence 64444445677999999999873
No 229
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.83 E-value=7.9e-09 Score=83.10 Aligned_cols=111 Identities=11% Similarity=0.148 Sum_probs=72.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc-------------c---ccceeeeEEEEEEEC--CeEEEEEEEecCCCCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RS-------------L---QMAGLNLINKTLMVQ--GARIAFSIWDVGGDSR 160 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~-------------~---~t~g~~~~~~~v~~~--~~~~~l~i~Dt~G~e~ 160 (215)
..+|.++|..++|||||+.++....-. .. . ...+........... .....++++|++|+..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 578999999999999999999854321 00 0 011222222222332 5568899999999999
Q ss_pred CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~ 213 (215)
|........+.+|++|+|.|..+.-.-+ ....+..+....-+ .+++++|+
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~~~p--~ivvlNK~ 132 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRELGIP--IIVVLNKM 132 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHTT-S--EEEEEETC
T ss_pred eeecccceecccccceeeeecccccccc-cccccccccccccc--eEEeeeec
Confidence 8777777789999999999998764432 23444445443312 45555553
No 230
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.82 E-value=9.8e-09 Score=92.39 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=58.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccc------cceeeeEE----------------EEEEECC------eEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ------MAGLNLIN----------------KTLMVQG------ARIA 149 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~------t~g~~~~~----------------~~v~~~~------~~~~ 149 (215)
...++|+++|..++|||||+..+.+.....+.. |+...+.. .....++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 357899999999999999999986532211111 11111110 0000011 1467
Q ss_pred EEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 150 l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~ 184 (215)
+++||++|+++|..........+|++++|+|.++.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g 116 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEP 116 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC
Confidence 99999999999877666677789999999999963
No 231
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.80 E-value=4.2e-08 Score=82.83 Aligned_cols=85 Identities=24% Similarity=0.257 Sum_probs=53.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc---c-------
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---H------- 164 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~---~------- 164 (215)
....++|+++|.+|||||||++.+.+.... .................++ .++.+|||+|-..... .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 344789999999999999999999987653 2121111122112223344 5689999999765421 1
Q ss_pred chhhcc--CCcEEEEEEeCCC
Q 028037 165 VPIACK--DAVAILFMFDLTS 183 (215)
Q Consensus 165 ~~~~~~--~a~~iilvfdit~ 183 (215)
...|+. ..+++++|..++.
T Consensus 106 I~~~l~~~~idvIL~V~rlD~ 126 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDM 126 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCC
Confidence 122332 5788888876664
No 232
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.80 E-value=1.7e-08 Score=83.28 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=56.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC---------------------------CCCccc---cceeeeEEEEEEECCeEEEEE
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNE---------------------------QERSLQ---MAGLNLINKTLMVQGARIAFS 151 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~---------------------------f~~~~~---t~g~~~~~~~v~~~~~~~~l~ 151 (215)
+|+++|..++|||||+.+++... +.++.+ ..|.........+.....++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999986320 001111 112222222233333457899
Q ss_pred EEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 152 i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~ 184 (215)
+|||+|+..|.......+..+|++++|+|.++.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence 999999987765555566789999999999985
No 233
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.79 E-value=3.4e-08 Score=84.30 Aligned_cols=108 Identities=12% Similarity=0.128 Sum_probs=69.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc--CCCC------------Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG--NEQE------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~--~~f~------------~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~ 164 (215)
+|.++|-.++|||||+++++. +... ++.+ ..|.........+.....++.+|||+|..+|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 488999999999999999973 1100 1111 1133333333333334578899999999988877
Q ss_pred chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII 213 (215)
Q Consensus 165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~ 213 (215)
...+++.+|++++|.|.++...-+ ....+..+.+. ++| +++++|+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~~---~~p~ivviNK~ 126 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADRY---NVPRIAFVNKM 126 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHHc---CCCEEEEEECC
Confidence 888899999999999998753222 23344444433 345 4555553
No 234
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.77 E-value=4.3e-08 Score=79.78 Aligned_cols=110 Identities=11% Similarity=0.121 Sum_probs=71.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCC-------CC-----Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNE-------QE-----RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~-------f~-----~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~ 164 (215)
.++|.++|-.++|||||+.+++... .. +..+ ..|.........+.....++.+.||+|...|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4789999999999999999998531 00 1101 2244444444445455567899999999887665
Q ss_pred chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ--SLFFHII 213 (215)
Q Consensus 165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~ 213 (215)
....+..+|++++|.|.+..-.- .....+..+.+. ++| |++++|+
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~---~~~~iIvviNK~ 128 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMP-QTREHLLLARQV---GVPYIVVFLNKA 128 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCcEEEEEeCC
Confidence 56667899999999998864221 222334444433 344 4567775
No 235
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.76 E-value=4.4e-08 Score=81.40 Aligned_cols=107 Identities=9% Similarity=0.133 Sum_probs=64.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccc------------------------cceeeeEEEEEE-------------EC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQ------------------------MAGLNLINKTLM-------------VQ 144 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~------------------------t~g~~~~~~~v~-------------~~ 144 (215)
||+++|+.++|||||+.+|..+.|.+... ..|.+...+.+. +.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999877652100 112221111000 01
Q ss_pred CeEEEEEEEecCCCCCCCccchhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEee
Q 028037 145 GARIAFSIWDVGGDSRSFDHVPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHI 212 (215)
Q Consensus 145 ~~~~~l~i~Dt~G~e~~~~~~~~~~--~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~ 212 (215)
.....+.+.|++|+++|.......+ ..+|++++|.|.+...+ ..-..++..+.... +| +++++|
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~~---ip~ivvvNK 147 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALALN---IPVFVVVTK 147 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHcC---CCEEEEEEC
Confidence 1235789999999998754333333 36899999999876543 22234555554433 45 444444
No 236
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.75 E-value=6.7e-08 Score=84.32 Aligned_cols=65 Identities=17% Similarity=0.328 Sum_probs=51.2
Q ss_pred EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----------CTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~----------~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
.+.+.+||++||...+..|..|+.+++++++|.|+++. +.+++....++.+-.... .++|++|++
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~ 235 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFL 235 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEc
Confidence 57899999999999999999999999999999999984 445555555555544332 578888775
No 237
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.74 E-value=4e-08 Score=93.95 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=71.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC--CCC------------Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN--EQE------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~--~f~------------~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~ 162 (215)
--+|.++|-.++|||||+++++.. ... ++.+ ..|.........+.-.+.++++|||+|+.+|.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 458999999999999999999731 110 0000 11222222222332235789999999999988
Q ss_pred ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE-EEEee
Q 028037 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQS-LFFHI 212 (215)
Q Consensus 163 ~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~pi-IlVa~ 212 (215)
.....+++.+|++++|+|.++....+...-| ..+++. ++|+ ++++|
T Consensus 90 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~---~~p~ivviNK 136 (689)
T TIGR00484 90 VEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANRY---EVPRIAFVNK 136 (689)
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHHc---CCCEEEEEEC
Confidence 8788889999999999999987665544333 344433 3454 44555
No 238
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.73 E-value=4e-08 Score=88.63 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=57.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCcc------ccceeeeEEEEE----------------EEC--C----eEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSL------QMAGLNLINKTL----------------MVQ--G----ARIA 149 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~------~t~g~~~~~~~v----------------~~~--~----~~~~ 149 (215)
...++|+++|..++|||||+.++.+....... -|+...+....+ .++ + ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 44799999999999999999988543111111 122221110000 011 1 1368
Q ss_pred EEEEecCCCCCCCccchhhccCCcEEEEEEeCCC----hhhHHHHH
Q 028037 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNSIV 191 (215)
Q Consensus 150 l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~----~~Sf~~i~ 191 (215)
+++|||+|+++|..........+|++++|+|.++ .++++.+.
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~ 132 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM 132 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH
Confidence 9999999998775433333445799999999995 44444443
No 239
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.73 E-value=1.4e-08 Score=83.86 Aligned_cols=113 Identities=18% Similarity=0.293 Sum_probs=76.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCcccccee--eeEEEEEEECCeEEEEEEEecCCCCCC-----CccchhhccCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGL--NLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIACKDA 172 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~--~~~~~~v~~~~~~~~l~i~Dt~G~e~~-----~~~~~~~~~~a 172 (215)
.-||+++|-+|+||||+-.-+..+.........|. |+.--.+.+-| ++.|++||.+||+.+ ....+..+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 46999999999999999776664433211122222 33222222222 478999999999953 33556678999
Q ss_pred cEEEEEEeCCChhhHHHH---HHHHHHHHhHCCCCceEEEEeec
Q 028037 173 VAILFMFDLTSRCTLNSI---VGWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 173 ~~iilvfdit~~~Sf~~i---~~wl~~i~~~~~~~~piIlVa~~ 213 (215)
++++.+||+.+++--..+ +.-++.+.++.+.....++++|+
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKm 126 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKM 126 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeec
Confidence 999999999998544444 45566677777666667777765
No 240
>PRK12735 elongation factor Tu; Reviewed
Probab=98.73 E-value=7.5e-08 Score=86.40 Aligned_cols=112 Identities=12% Similarity=0.149 Sum_probs=71.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC-------CCC-----Ccc---ccceeeeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGN-------EQE-----RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~-------~f~-----~~~---~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~ 162 (215)
...++|.++|-.++|||||+.++++. .+. +.. ...|.........++....++.++||+|+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 45789999999999999999999852 110 110 122443333344444445678999999998775
Q ss_pred ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE--EEeec
Q 028037 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL--FFHII 213 (215)
Q Consensus 163 ~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI--lVa~~ 213 (215)
.........+|++++|+|.++...- ...+++..+.. .++|.+ +++|+
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~ 138 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKC 138 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEec
Confidence 5444556788999999999874322 22234444433 346633 46764
No 241
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.70 E-value=1.9e-07 Score=75.63 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=52.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Ccc--ccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc--------cc---h
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSL--QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HV---P 166 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~--~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~--------~~---~ 166 (215)
++|+++|.+|||||||++.+++.+.. ... +....+........++ ..+.+.||+|-..... +. .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987543 221 1111122222333444 4689999999655421 11 1
Q ss_pred hhccCCcEEEEEEeCCC
Q 028037 167 IACKDAVAILFMFDLTS 183 (215)
Q Consensus 167 ~~~~~a~~iilvfdit~ 183 (215)
....+.|++|+|.|..+
T Consensus 79 ~~~~g~~~illVi~~~~ 95 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR 95 (196)
T ss_pred hcCCCCEEEEEEEECCC
Confidence 12357899999999886
No 242
>PLN03126 Elongation factor Tu; Provisional
Probab=98.69 E-value=9.8e-08 Score=87.57 Aligned_cols=113 Identities=10% Similarity=0.095 Sum_probs=73.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC------CCC------C---ccccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGN------EQE------R---SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~------~f~------~---~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~ 161 (215)
....++|+++|..++|||||+.+++.. ... + .....|.........++....++.++|++|+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 455789999999999999999999852 111 0 0112233333333334334567899999999988
Q ss_pred CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ--SLFFHII 213 (215)
Q Consensus 162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~ 213 (215)
..........+|++++|+|.++...- ...+++..+... ++| |++++|+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~---gi~~iIvvvNK~ 207 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQ 207 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEecc
Confidence 65555556789999999998865322 224444444443 355 4567775
No 243
>PRK12736 elongation factor Tu; Reviewed
Probab=98.67 E-value=1.3e-07 Score=84.72 Aligned_cols=113 Identities=11% Similarity=0.126 Sum_probs=70.8
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCC-------CC-----Ccc---ccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNE-------QE-----RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~-------f~-----~~~---~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~ 161 (215)
....++|+++|-.++|||||+.++++.. +. +.. ...|.........++.....+.++||+|+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 3447899999999999999999998521 10 000 12243333334445445567899999999887
Q ss_pred CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ--SLFFHII 213 (215)
Q Consensus 162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~ 213 (215)
......-...+|++++|+|.++...- .-..++..+... ++| |++++|+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~~---g~~~~IvviNK~ 138 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQV---GVPYLVVFLNKV 138 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHHc---CCCEEEEEEEec
Confidence 54444445788999999998863211 112333334332 456 4557764
No 244
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.66 E-value=1.4e-07 Score=83.20 Aligned_cols=66 Identities=15% Similarity=0.281 Sum_probs=51.3
Q ss_pred EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----------CTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~----------~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
.+.+.+||++||...+..|..|+.+++++++|.|+++. ..+++....++.+-... -.++|++|++.
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~N 259 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLN 259 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence 35689999999999999999999999999999999973 34666656666655432 25688887763
No 245
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.65 E-value=4e-08 Score=89.49 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=66.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCC--------------------------C-Cccc---cceeeeEEEEEEECCeE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ--------------------------E-RSLQ---MAGLNLINKTLMVQGAR 147 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f--------------------------~-~~~~---t~g~~~~~~~v~~~~~~ 147 (215)
...++++++|-.++|||||+-+++..-- . +..+ ..|.........+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4578999999999999999998873110 0 1111 11333333344455566
Q ss_pred EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHH
Q 028037 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS 189 (215)
Q Consensus 148 ~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~ 189 (215)
..+++.|++|+++|.......+..+|++|+|+|.++ .+|+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~ 125 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEA 125 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-Cceec
Confidence 789999999999998888888899999999999987 45553
No 246
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.64 E-value=3.4e-07 Score=84.06 Aligned_cols=113 Identities=11% Similarity=0.172 Sum_probs=87.9
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCc
Q 028037 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (215)
Q Consensus 95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~ 173 (215)
..+..-+++.++|+.++|||.|++.|++..+. .+..+....+....+.+.|+.-.+-+-|.+-. ....+...- ..+|
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence 33455689999999999999999999999888 55567777777777888788888888887755 333333322 6789
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 174 AILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 174 ~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++.++||.+++.||+.+...++.-... ..+|++.||
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va 533 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVA 533 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEe
Confidence 999999999999999988766554433 679998887
No 247
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.62 E-value=6.3e-08 Score=81.85 Aligned_cols=109 Identities=16% Similarity=0.228 Sum_probs=69.8
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccceeeeEEE-EEEECCeEEEEEEEecCCCCC-------CCccchh
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINK-TLMVQGARIAFSIWDVGGDSR-------SFDHVPI 167 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~-~t~g~~~~~~-~v~~~~~~~~l~i~Dt~G~e~-------~~~~~~~ 167 (215)
.....+++++|..|+|||||+|.+++++..+.. -..|.+.... ...+++ -.+.|||++|-++ ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 445789999999999999999999976654211 1222222111 112233 4589999999776 5555667
Q ss_pred hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE
Q 028037 168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF 209 (215)
Q Consensus 168 ~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl 209 (215)
++...|.++.+.+..|+.= .--.+.+.++....-+ .++++
T Consensus 114 ~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~~~-~~~i~ 153 (296)
T COG3596 114 YLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILGLD-KRVLF 153 (296)
T ss_pred HhhhccEEEEeccCCCccc-cCCHHHHHHHHHhccC-ceeEE
Confidence 7889999999999988742 2223555555544422 44443
No 248
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.60 E-value=3.7e-07 Score=81.95 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=73.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----------CCccc-
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHV- 165 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----------~~~~~- 165 (215)
..+||+++|-++||||||+|++++.+-. ...+.+..|.-...+..+++. +.+.||+|-.+ |....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999988765 445544445555566666654 67899999544 22111
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
......+|++++|.|.+..-+-+..+ ....+.+. ....+|+|+|
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~~--g~~~vIvvNK 298 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLR-IAGLIEEA--GRGIVIVVNK 298 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHHc--CCCeEEEEEc
Confidence 22356899999999999876655433 22222222 3455666765
No 249
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.59 E-value=3.6e-08 Score=89.77 Aligned_cols=112 Identities=20% Similarity=0.353 Sum_probs=89.4
Q ss_pred CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCC
Q 028037 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA 172 (215)
Q Consensus 93 ~~~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a 172 (215)
.-.....++|+-++|+.++|||+|++||+.+.|.....+.|..|. +.+.+++....+-+.|.+|... .+|..+.
T Consensus 23 tlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~k-kE~vv~gqs~lLlirdeg~~~~-----aQft~wv 96 (749)
T KOG0705|consen 23 TLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFK-KEVVVDGQSHLLLIRDEGGHPD-----AQFCQWV 96 (749)
T ss_pred eeecccchhheeeeecccCCceeeeeeeccceeccccCCcCccce-eeEEeeccceEeeeecccCCch-----hhhhhhc
Confidence 344456689999999999999999999999999965667776665 6667788889999999888332 3577899
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEE
Q 028037 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFF 210 (215)
Q Consensus 173 ~~iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlV 210 (215)
|++|+||.+.|.+||+.++.+.-++..+.. ..+|+++|
T Consensus 97 davIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lv 135 (749)
T KOG0705|consen 97 DAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILV 135 (749)
T ss_pred cceEEEEEeccccCHHHHHHHHhhcccccccccchHHhh
Confidence 999999999999999999988777754432 45665554
No 250
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.58 E-value=4.1e-07 Score=78.00 Aligned_cols=114 Identities=12% Similarity=0.194 Sum_probs=70.6
Q ss_pred CCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCCCCC---ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc---
Q 028037 90 SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQER---SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--- 163 (215)
Q Consensus 90 ~~~~~~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~---~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~--- 163 (215)
.+.+...+...+.|.++|.++||||||.|++++.+... -..|+-.+. .-.+-....++-++||+|--.-..
T Consensus 62 esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~i---lgi~ts~eTQlvf~DTPGlvs~~~~r~ 138 (379)
T KOG1423|consen 62 ESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRI---LGIITSGETQLVFYDTPGLVSKKMHRR 138 (379)
T ss_pred cCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeee---eEEEecCceEEEEecCCcccccchhhh
Confidence 33445666778999999999999999999999887652 112222111 111223467899999999432111
Q ss_pred ---------cchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE
Q 028037 164 ---------HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF 209 (215)
Q Consensus 164 ---------~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl 209 (215)
--......||++++++|.++....-+ ...+..++++. ++|-+|
T Consensus 139 ~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~l 190 (379)
T KOG1423|consen 139 HHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSIL 190 (379)
T ss_pred HHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCcee
Confidence 01122467999999999997433222 23444555553 456443
No 251
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.58 E-value=1.3e-07 Score=72.69 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=40.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~ 158 (215)
+++++|.+|||||||++++.+.++.......|.+.....+.+++ .+.||||+|-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999887753333334444445556654 5799999994
No 252
>CHL00071 tufA elongation factor Tu
Probab=98.57 E-value=4.4e-07 Score=81.83 Aligned_cols=113 Identities=9% Similarity=0.095 Sum_probs=71.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCC-------------C--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQ-------------E--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f-------------~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~ 161 (215)
....++|+++|-.++|||||++++++..- . +.....|.........+.....++.+.||+|+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 44579999999999999999999986311 0 00011233333333334444567889999998877
Q ss_pred CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-E-EEEeec
Q 028037 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-S-LFFHII 213 (215)
Q Consensus 162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-i-IlVa~~ 213 (215)
..........+|++++|.|.++.-. ..-...+..+... ++| + ++++|+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~ 138 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKE 138 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEcc
Confidence 5555555678999999999886422 2223334444332 466 3 557764
No 253
>COG1159 Era GTPase [General function prediction only]
Probab=98.55 E-value=8.7e-07 Score=75.72 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=69.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccc-cceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc--------ch
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VP 166 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~--------~~ 166 (215)
+..--|.++|.++||||||+|++++.... ...+ |+-... ..+...+ +.++-+.||+|-.+-... ..
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I--~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRI--RGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhhe--eEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 45678999999999999999999998765 2222 443222 2233322 678899999997654322 23
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhHCCCCce-EEEEee
Q 028037 167 IACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQVTKQ-SLFFHI 212 (215)
Q Consensus 167 ~~~~~a~~iilvfdit~~~Sf~~i~~-wl~~i~~~~~~~~p-iIlVa~ 212 (215)
..+.++|++++|.|.++.-. .-.. .++.+++ .+.| +++++|
T Consensus 81 ~sl~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNK 123 (298)
T COG1159 81 SALKDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNK 123 (298)
T ss_pred HHhccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEc
Confidence 34678999999999887432 2333 3444444 2345 444454
No 254
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=4.4e-07 Score=81.94 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=69.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCC-CCc--------cch
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFD--------HVP 166 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~-~~~--------~~~ 166 (215)
...++|+++|.++||||||+|.+...+.. ...+.+.-|.-...++++| +++.+.||+|-.+ -.. ...
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence 33589999999999999999999988765 4444333344445666776 5678899999665 111 123
Q ss_pred hhccCCcEEEEEEeC--CChhhHHHHHHHHHHHH
Q 028037 167 IACKDAVAILFMFDL--TSRCTLNSIVGWYSEAR 198 (215)
Q Consensus 167 ~~~~~a~~iilvfdi--t~~~Sf~~i~~wl~~i~ 198 (215)
.-.+.+|++++|+|. ++-++-..+.+.++...
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~ 377 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEG 377 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhc
Confidence 335789999999999 55555555556665553
No 255
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.52 E-value=2.8e-07 Score=82.97 Aligned_cols=84 Identities=14% Similarity=0.234 Sum_probs=56.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--C---------------------------ccc---cceeeeEEEEEEECCeEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE--R---------------------------SLQ---MAGLNLINKTLMVQGARI 148 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~---------------------------~~~---t~g~~~~~~~v~~~~~~~ 148 (215)
++|+++|-.++|||||+.+++...-. . ..+ ..|.........+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999633111 0 000 012222222223333446
Q ss_pred EEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 149 ~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~ 184 (215)
++.++||+|+++|.......+..+|++++|+|.++.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G 116 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG 116 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 889999999998865445567899999999998764
No 256
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.51 E-value=7.1e-07 Score=72.34 Aligned_cols=106 Identities=10% Similarity=0.105 Sum_probs=68.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEECCeEEEEEEEecCCC----------CCCCccchh
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQ-ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD----------SRSFDHVPI 167 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f-~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~----------e~~~~~~~~ 167 (215)
...-|+++|-++|||||||+.+++..- .....|.|..-....+.+++. +.+.|.+|- ++...+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 356899999999999999999999663 354455665544444555544 778999983 334455566
Q ss_pred hccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 168 ACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 168 ~~~~---a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
|++. -.+++++.|....-.-.+. +.++.+.. .++|+++|+
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~ 142 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVL 142 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEE
Confidence 6643 4677888888765443222 22333322 357777665
No 257
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.50 E-value=1.7e-07 Score=72.52 Aligned_cols=73 Identities=22% Similarity=0.347 Sum_probs=47.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCC----CCCccchhhccCCcEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----RSFDHVPIACKDAVAIL 176 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e----~~~~~~~~~~~~a~~ii 176 (215)
-||+++|..|+|||||++++.+.+.. +..|....|... +.||+|.= .|....-....+||.++
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~-~~KTq~i~~~~~------------~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR-YKKTQAIEYYDN------------TIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC-cCccceeEeccc------------EEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 38999999999999999999976653 333444444322 35777631 12222222335788888
Q ss_pred EEEeCCChhh
Q 028037 177 FMFDLTSRCT 186 (215)
Q Consensus 177 lvfdit~~~S 186 (215)
++.|.+++.+
T Consensus 69 ll~dat~~~~ 78 (143)
T PF10662_consen 69 LLQDATEPRS 78 (143)
T ss_pred EEecCCCCCc
Confidence 8888887644
No 258
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.49 E-value=6e-07 Score=82.40 Aligned_cols=88 Identities=14% Similarity=0.200 Sum_probs=58.8
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc----------------------------cc---cceeeeEEEEEEEC
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS----------------------------LQ---MAGLNLINKTLMVQ 144 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~----------------------------~~---t~g~~~~~~~v~~~ 144 (215)
....++|+++|-.++|||||+.+++...-. .. .+ ..|.........+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 345699999999999999999999744211 00 00 01222222222233
Q ss_pred CeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037 145 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 145 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~ 184 (215)
....++.++||+|+++|......-...+|++++|+|.++.
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G 143 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG 143 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 3456789999999988854444446899999999998764
No 259
>PRK00049 elongation factor Tu; Reviewed
Probab=98.49 E-value=9.8e-07 Score=79.23 Aligned_cols=112 Identities=9% Similarity=0.107 Sum_probs=72.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCC-------C-----Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ-------E-----RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f-------~-----~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~ 162 (215)
...++|+++|-.++|||||+.++++... . +..+ ..|.........+.....++.+.||+|+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 4578999999999999999999986210 0 0000 22333333344444445678899999998775
Q ss_pred ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE--EEeec
Q 028037 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL--FFHII 213 (215)
Q Consensus 163 ~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI--lVa~~ 213 (215)
.........+|++++|.|.++... .....++..+... ++|.+ +++|+
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~ 138 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKC 138 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeec
Confidence 555555789999999999887432 2223444444433 36743 46764
No 260
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.46 E-value=1.5e-06 Score=75.22 Aligned_cols=105 Identities=21% Similarity=0.297 Sum_probs=69.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccccc--eeeeEEEEEEECCeEEEEEEEecCCCCC--CCccchh------h
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMA--GLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVPI------A 168 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~--g~~~~~~~v~~~~~~~~l~i~Dt~G~e~--~~~~~~~------~ 168 (215)
...|++.|.++||||||++.+.+.+-. ..+|.+ ++... .+ +.....+|+.||+|--. ...+++. .
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG--hf--e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG--HF--ERGYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe--ee--ecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 467999999999999999999988777 555522 33322 22 33446899999999432 2222211 1
Q ss_pred c-cCCcEEEEEEeCCChh--hHHHHHHHHHHHHhHCCCCceEEEE
Q 028037 169 C-KDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQVTKQSLFF 210 (215)
Q Consensus 169 ~-~~a~~iilvfdit~~~--Sf~~i~~wl~~i~~~~~~~~piIlV 210 (215)
+ .=+++++++||.+..+ |.+.=...+++++..-. .|+++|
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V 286 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVV 286 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEE
Confidence 1 2368899999988754 44554578899988764 555544
No 261
>PLN03127 Elongation factor Tu; Provisional
Probab=98.45 E-value=2e-06 Score=78.41 Aligned_cols=113 Identities=11% Similarity=0.145 Sum_probs=69.9
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC------CCC------Cc---cccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGN------EQE------RS---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~------~f~------~~---~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~ 161 (215)
....++|+++|-.++|||||+.++.+. ... +. ....|.........++....++.+.||+|+++|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 345789999999999999999999621 110 00 001233333334444445567899999999887
Q ss_pred CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ--SLFFHII 213 (215)
Q Consensus 162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~ 213 (215)
......-...+|++++|.|.++...-+ -.+.+..+.. .++| |++++|+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~---~gip~iIvviNKi 187 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVVFLNKV 187 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEee
Confidence 554444456799999999987643211 2233333333 2366 4567775
No 262
>PRK12740 elongation factor G; Reviewed
Probab=98.45 E-value=3.7e-07 Score=87.05 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=67.0
Q ss_pred EcCCCCCHHHHHHHHhcCCC--------C------Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhh
Q 028037 106 LGDCQIGKTSFVVKYVGNEQ--------E------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA 168 (215)
Q Consensus 106 lGd~~vGKTSLi~r~~~~~f--------~------~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~ 168 (215)
+|..++|||||+++++...- . ++.. ..|.........+....+.+++|||+|+.+|......+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 58899999999999953211 0 1100 11222222223333345789999999999887777788
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE-EEee
Q 028037 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL-FFHI 212 (215)
Q Consensus 169 ~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI-lVa~ 212 (215)
++.+|++++|+|.++..+.+....|. .+.. .++|++ +++|
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~---~~~p~iiv~NK 121 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWR-QAEK---YGVPRIIFVNK 121 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH---cCCCEEEEEEC
Confidence 89999999999999887766554443 3333 245644 4444
No 263
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.44 E-value=6e-07 Score=69.84 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=40.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G 157 (215)
..+++++|.++||||||++++.++......++.|.......+..++ .+.+|||+|
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 5788999999999999999999766445556666544333333333 589999998
No 264
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.43 E-value=2e-06 Score=74.32 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=65.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----CC---ccchhhccC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SF---DHVPIACKD 171 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~---~~~~~~~~~ 171 (215)
...++++|.++||||||++.+.+-+.. ..++.+..+.-.-.+.++ ..++||.|++|--+ -. ...-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~--ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYK--GAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeec--CceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 468999999999999999999987766 444433233323344444 47799999997432 11 223345689
Q ss_pred CcEEEEEEeCCChhh-HHHHHHHHHH
Q 028037 172 AVAILFMFDLTSRCT-LNSIVGWYSE 196 (215)
Q Consensus 172 a~~iilvfdit~~~S-f~~i~~wl~~ 196 (215)
||.+++|.|+....+ .+.+.+-+++
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~ 166 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELED 166 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHh
Confidence 999999999997766 5555544444
No 265
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.42 E-value=3.1e-06 Score=66.18 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=43.9
Q ss_pred EEEEEecCCCCC----CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 149 AFSIWDVGGDSR----SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 149 ~l~i~Dt~G~e~----~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
.+.|.||+|-.. ...+...|+..+|++|+|.+.+...+-.....|.+...... +.-++|++|
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~--~~~i~V~nk 167 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK--SRTIFVLNK 167 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC--SSEEEEEE-
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC--CeEEEEEcC
Confidence 588999999643 34667888899999999999998666556666666665443 335555555
No 266
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.40 E-value=1.3e-06 Score=74.98 Aligned_cols=61 Identities=18% Similarity=0.337 Sum_probs=42.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc----------cccceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RS----------LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~----------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e 159 (215)
..++|+|+|++|+|||||++.+++.... .. ..+..+......+.-++..+.|.++||+|-.
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfG 74 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFG 74 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcc
Confidence 3689999999999999999999987655 21 0122333333444457889999999999943
No 267
>PRK12739 elongation factor G; Reviewed
Probab=98.40 E-value=7.5e-07 Score=85.30 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=69.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC--C---C---C------Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN--E---Q---E------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~--~---f---~------~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~ 162 (215)
..+|.++|-.++|||||+++++.. . . . ++.+ ..|.........+.-...++.++||+|+.+|.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~ 87 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT 87 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH
Confidence 578999999999999999999742 1 0 0 0000 11222222222222234678999999998887
Q ss_pred ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII 213 (215)
Q Consensus 163 ~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~ 213 (215)
......++.+|++++|.|.++.-.-+.. ..+..+.+. ++| +++++|+
T Consensus 88 ~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~~---~~p~iv~iNK~ 135 (691)
T PRK12739 88 IEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADKY---GVPRIVFVNKM 135 (691)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc---CCCEEEEEECC
Confidence 7777788999999999999876443332 333334333 244 5555554
No 268
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.39 E-value=2e-06 Score=78.47 Aligned_cols=87 Identities=13% Similarity=0.203 Sum_probs=62.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC--CCC-------------------------Cccc---cceeeeEEEEEEECCeE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQE-------------------------RSLQ---MAGLNLINKTLMVQGAR 147 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~--~f~-------------------------~~~~---t~g~~~~~~~v~~~~~~ 147 (215)
...++|+++|..++|||||+.+++.. ... +..+ ..|.........++...
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 45789999999999999999999751 100 1111 11333333334445556
Q ss_pred EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 148 ~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~ 184 (215)
..+.|.|++|+++|..........+|++++|.|.++.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G 121 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG 121 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC
Confidence 7899999999999876666667899999999998864
No 269
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.37 E-value=2.3e-06 Score=70.37 Aligned_cols=80 Identities=23% Similarity=0.200 Sum_probs=48.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Ccc--ccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc--------cc---h
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSL--QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HV---P 166 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~--~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~--------~~---~ 166 (215)
++|+|+|..|+||||++|.+++.... ... ......+......++| ..+.++||+|-..... +. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999987654 221 1112223333446666 4578999999432211 11 1
Q ss_pred hhccCCcEEEEEEeCC
Q 028037 167 IACKDAVAILFMFDLT 182 (215)
Q Consensus 167 ~~~~~a~~iilvfdit 182 (215)
....+.+++|+|...+
T Consensus 79 ~~~~g~ha~llVi~~~ 94 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG 94 (212)
T ss_dssp HTTT-ESEEEEEEETT
T ss_pred hccCCCeEEEEEEecC
Confidence 1245789999999988
No 270
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=8.4e-07 Score=72.46 Aligned_cols=104 Identities=18% Similarity=0.189 Sum_probs=70.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhcc---CCcEEEEE
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK---DAVAILFM 178 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~---~a~~iilv 178 (215)
.|+++|.+++|||+|..++.++.+..+.+.+..+.. ...++... ..+.|.+|+++.+.-...|++ .+-+++||
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a--~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEA--TYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeeeecccee--eEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 589999999999999999999977765555444432 33333322 789999999998776666666 68899999
Q ss_pred EeCC-ChhhHHHHHHHHHHHHhHC---CCCceEEE
Q 028037 179 FDLT-SRCTLNSIVGWYSEARKWN---QVTKQSLF 209 (215)
Q Consensus 179 fdit-~~~Sf~~i~~wl~~i~~~~---~~~~piIl 209 (215)
.|.. .......+.+++-++...+ ....|++|
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLI 150 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLI 150 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 8755 3334445555544443332 34455544
No 271
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.36 E-value=1.4e-06 Score=82.74 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=56.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc------------ccc-------------------ceeeeEEEEEEECC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS------------LQM-------------------AGLNLINKTLMVQG 145 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~------------~~t-------------------~g~~~~~~~v~~~~ 145 (215)
...++|+++|-.++|||||+++++...-. .. .-+ .|.........+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 34578999999999999999999854211 10 000 01111111122223
Q ss_pred eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~ 184 (215)
...++.++||+|+++|..........+|++++|+|.++.
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g 140 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG 140 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 345678999999988754444457899999999998764
No 272
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.36 E-value=1e-06 Score=69.82 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=40.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~ 158 (215)
.++++++|.++||||||++++.+..+....+..+.......+.++ ..+.+|||+|-
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 479999999999999999999988775333333333434444443 35789999983
No 273
>PTZ00258 GTP-binding protein; Provisional
Probab=98.34 E-value=2e-06 Score=76.90 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=56.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCe---------------EEEEEEEecCCCCCC-
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRS- 161 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~---------------~~~l~i~Dt~G~e~~- 161 (215)
..+||.++|.++||||||++.+.+.... ..+|.+..+...-.+.+.+. ..++++.|++|-.+-
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 3579999999999999999999876655 44453333333333443322 245899999995431
Q ss_pred ---Cccchh---hccCCcEEEEEEeCC
Q 028037 162 ---FDHVPI---ACKDAVAILFMFDLT 182 (215)
Q Consensus 162 ---~~~~~~---~~~~a~~iilvfdit 182 (215)
..+... .++.+|++++|.|..
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 122223 356899999999974
No 274
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.31 E-value=4e-06 Score=78.92 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=63.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCC-CC-Ccc-c-cceeeeEEEEEEECCeEEEEEEEecCCCCCCCc-------c---
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNE-QE-RSL-Q-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-------H--- 164 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~-f~-~~~-~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~-------~--- 164 (215)
..++|+++|.+||||||++|.+++.. |. ... + |+.. .......++ ..+.++||+|-..... +
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~--~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV--QEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE--EEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHH
Confidence 36899999999999999999999875 43 221 2 2221 111223344 5689999999765321 1
Q ss_pred chhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC
Q 028037 165 VPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202 (215)
Q Consensus 165 ~~~~~~--~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~ 202 (215)
...++. +.|++|+|..++......+-..+++.|.+..+
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG 232 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLG 232 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhC
Confidence 111333 58999999988755443333467777766554
No 275
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.26 E-value=6.3e-06 Score=75.44 Aligned_cols=100 Identities=20% Similarity=0.346 Sum_probs=73.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEC--CeEEEEEEEecCCCCCCCccchhhccC----Cc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKD----AV 173 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~--~~~~~l~i~Dt~G~e~~~~~~~~~~~~----a~ 173 (215)
.-.|+|+|+.++|||||+.+|.+.+ +..++.|.+|..-.+.-+ .....+.+|...|...+..+....+.. --
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 5689999999999999999986543 344577777765444332 234678999998877776666555442 24
Q ss_pred EEEEEEeCCChhhHH-HHHHHHHHHHhHC
Q 028037 174 AILFMFDLTSRCTLN-SIVGWYSEARKWN 201 (215)
Q Consensus 174 ~iilvfdit~~~Sf~-~i~~wl~~i~~~~ 201 (215)
.+|||.|++.+.++- .+..|+..++++.
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i 131 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHI 131 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHH
Confidence 788999999997765 6788988887654
No 276
>PRK00007 elongation factor G; Reviewed
Probab=98.25 E-value=3.1e-06 Score=81.09 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=68.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc--CCCC------------Ccc---ccceeeeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG--NEQE------------RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~--~~f~------------~~~---~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~ 162 (215)
-.+|.++|-.++|||||+++++. +... ++. ...|.........+.-...++++.||+|+.+|.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 46999999999999999999973 2110 110 011222222222222234679999999998776
Q ss_pred ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII 213 (215)
Q Consensus 163 ~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~ 213 (215)
......+..+|++++|.|.+..-.-+...-|. .+.+.. +| +++|+|+
T Consensus 90 ~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~~---~p~iv~vNK~ 137 (693)
T PRK00007 90 IEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKYK---VPRIAFVNKM 137 (693)
T ss_pred HHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHcC---CCEEEEEECC
Confidence 55556678899999999988664444433333 344332 33 5556654
No 277
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.22 E-value=4.5e-06 Score=71.40 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=53.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCe---------------EEEEEEEecCCCCC----CC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSR----SF 162 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~---------------~~~l~i~Dt~G~e~----~~ 162 (215)
|.++|.++||||||++++.+.... ..++.+..+...-.+.+.+. ...+++.|++|-.+ -.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 468999999999999999988765 44443333333334444332 23599999999543 12
Q ss_pred ccchhh---ccCCcEEEEEEeCC
Q 028037 163 DHVPIA---CKDAVAILFMFDLT 182 (215)
Q Consensus 163 ~~~~~~---~~~a~~iilvfdit 182 (215)
.+...+ .+.+|+++.|.|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 222333 46799999999864
No 278
>COG2262 HflX GTPases [General function prediction only]
Probab=98.21 E-value=1.6e-05 Score=70.69 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=79.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC--Cccchhh------cc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDHVPIA------CK 170 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~--~~~~~~~------~~ 170 (215)
-..|.++|-.++|||||+|.+.+.... +..-....+...+.+.+.+ ...+-+-||.|--+- ..+...| ..
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~ 270 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK 270 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence 468999999999999999999976554 3333334455667777764 456788999995442 1222222 35
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
.+|.++.|.|.+|+.-.+.++.-.+-+.+..-.++|+|+|-
T Consensus 271 ~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~ 311 (411)
T COG2262 271 EADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVL 311 (411)
T ss_pred cCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 89999999999999888887766666666554568877653
No 279
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.19 E-value=4.7e-06 Score=80.38 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=72.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC------------Cccc---cceeeeEEE----EEEECCeEEEEEEEecCCCCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE------------RSLQ---MAGLNLINK----TLMVQGARIAFSIWDVGGDSR 160 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~------------~~~~---t~g~~~~~~----~v~~~~~~~~l~i~Dt~G~e~ 160 (215)
.-+|.++|..++|||||+.+++...-. ++.+ ..|..+... ....++....+++.||+|+.+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 457999999999999999999742110 1111 001211111 122355678899999999999
Q ss_pred CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~ 213 (215)
|.......++.+|++|+|.|....-.-+...-|.. +.+.. ..+|++|+|+
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~~--~~~iv~iNK~ 149 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRER--VKPVLFINKV 149 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHcC--CCeEEEEECc
Confidence 87777778899999999999887644333334443 23322 2357777775
No 280
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.19 E-value=2.3e-05 Score=69.44 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=54.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCe---------------EEEEEEEecCCCCCC---
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRS--- 161 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~---------------~~~l~i~Dt~G~e~~--- 161 (215)
++|.++|-++||||||++++.+.... ..+|.+..+...-.+.+.+. ..++++.|++|-.+-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999987754 44443222222223343332 136899999995431
Q ss_pred -Cccchhh---ccCCcEEEEEEeCC
Q 028037 162 -FDHVPIA---CKDAVAILFMFDLT 182 (215)
Q Consensus 162 -~~~~~~~---~~~a~~iilvfdit 182 (215)
..+...+ ++.+|++++|.|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1222223 57899999999984
No 281
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.18 E-value=2.6e-05 Score=73.17 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=62.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC------ccchhhc--c
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIAC--K 170 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~------~~~~~~~--~ 170 (215)
..+|.++|.++||||||.|++.+.... .+.|.+..+-+.-.+...+. ++++.|.+|--... ...+.|+ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 567999999999999999999998877 77776555554445555554 48899999954332 2334443 3
Q ss_pred CCcEEEEEEeCCChhh
Q 028037 171 DAVAILFMFDLTSRCT 186 (215)
Q Consensus 171 ~a~~iilvfdit~~~S 186 (215)
+.|+++-|.|-+|.+-
T Consensus 81 ~~D~ivnVvDAtnLeR 96 (653)
T COG0370 81 KPDLIVNVVDATNLER 96 (653)
T ss_pred CCCEEEEEcccchHHH
Confidence 5699999999998654
No 282
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.18 E-value=3.8e-06 Score=82.13 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=71.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC------------Cccc---cceeeeEE--EEEEE--------------CCeEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE------------RSLQ---MAGLNLIN--KTLMV--------------QGARI 148 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~------------~~~~---t~g~~~~~--~~v~~--------------~~~~~ 148 (215)
--+|.++|-.++|||||+.+++...-. ++.+ ..|..+.. ..+.. ++..+
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY 98 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence 458999999999999999999853310 1111 11222221 11111 22367
Q ss_pred EEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII 213 (215)
Q Consensus 149 ~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~ 213 (215)
.+++.||+|+..|.......++.+|++|+|.|.++.-.-+...-|.. +.. .++| +++++|+
T Consensus 99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~---~~~p~i~~iNK~ 160 (843)
T PLN00116 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKM 160 (843)
T ss_pred EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHH---CCCCEEEEEECC
Confidence 89999999999998777777899999999999997655444444433 322 2355 6666664
No 283
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.17 E-value=7e-06 Score=72.93 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=52.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-Ccccccee--eeEEEEEEECCeEEEEEEEecCCCCCCCccchhh-----cc
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGL--NLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA-----CK 170 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~--~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~-----~~ 170 (215)
..++|.|.|++|+|||||||.+.+-.-. +....+|. ......-......-.+.+||.+|..-...-...| +.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~ 113 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY 113 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence 4689999999999999999999764333 22223332 1111111112222358899999965433333333 45
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHH-HHHHhHCCCCceEEEE
Q 028037 171 DAVAILFMFDLTSRCTLNSIVGWY-SEARKWNQVTKQSLFF 210 (215)
Q Consensus 171 ~a~~iilvfdit~~~Sf~~i~~wl-~~i~~~~~~~~piIlV 210 (215)
.-|.||++.+ +.|....-|+ .++++. +.|+.+|
T Consensus 114 ~yD~fiii~s----~rf~~ndv~La~~i~~~---gK~fyfV 147 (376)
T PF05049_consen 114 RYDFFIIISS----ERFTENDVQLAKEIQRM---GKKFYFV 147 (376)
T ss_dssp G-SEEEEEES----SS--HHHHHHHHHHHHT---T-EEEEE
T ss_pred ccCEEEEEeC----CCCchhhHHHHHHHHHc---CCcEEEE
Confidence 6788888765 3355554443 444443 3455544
No 284
>PTZ00416 elongation factor 2; Provisional
Probab=98.15 E-value=6.6e-06 Score=80.39 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=69.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCC------------CCccc---cceeeeEE--EEEEEC--------CeEEEEEEEe
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQ------------ERSLQ---MAGLNLIN--KTLMVQ--------GARIAFSIWD 154 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f------------~~~~~---t~g~~~~~--~~v~~~--------~~~~~l~i~D 154 (215)
.-+|.++|..++|||||+.+++...- .++.+ ..|..+.. ..+..+ +....+++.|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 34899999999999999999985211 01100 11222211 112222 2367899999
Q ss_pred cCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII 213 (215)
Q Consensus 155 t~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~ 213 (215)
|+|+.+|.......++.+|++|+|.|.++.-.-+.-.-| ..+.+. ++| +++++|+
T Consensus 99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~---~~p~iv~iNK~ 154 (836)
T PTZ00416 99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE---RIRPVLFINKV 154 (836)
T ss_pred CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc---CCCEEEEEECh
Confidence 999999877777778999999999998886443333333 334332 345 5666654
No 285
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.14 E-value=7.3e-06 Score=63.94 Aligned_cols=55 Identities=13% Similarity=0.261 Sum_probs=36.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G 157 (215)
..+++++|.+|||||||++++.+.......++.|.......+..++ .+.+.||+|
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 4689999999999999999999876543223333222222223322 267899998
No 286
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.10 E-value=1.4e-05 Score=68.44 Aligned_cols=57 Identities=12% Similarity=0.278 Sum_probs=40.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~ 158 (215)
..++++++|.+|||||||++++.+..........|.+.....+.++. .+.++||+|.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 36899999999999999999999876543223333333333444432 4789999997
No 287
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.08 E-value=3.2e-05 Score=64.20 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=60.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~-~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
...|+++|.+|+|||||++.+....-.. .....|. + .+. .....++.+.||+|.- ..+. ...+.+|+++++
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i~-~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllv 110 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TVV-TGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLL 110 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EEE-ecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEE
Confidence 5789999999999999999988642111 1111221 1 111 1245678899999853 2222 235789999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQ--SLFFHII 213 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~ 213 (215)
.|.+.....+. ...+..+... +.| +++++|+
T Consensus 111 iDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~ 143 (225)
T cd01882 111 IDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHL 143 (225)
T ss_pred EecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEecc
Confidence 99876443322 2333334332 244 3366653
No 288
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.05 E-value=1.2e-05 Score=64.13 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=38.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G 157 (215)
.++++++|.++||||||++++.+.......+..|.......+.++ -.+.++||+|
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC---CCEEEEECcC
Confidence 589999999999999999999987654222223333322333443 2478999998
No 289
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.01 E-value=2e-05 Score=67.77 Aligned_cols=58 Identities=12% Similarity=0.290 Sum_probs=40.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e 159 (215)
..++++++|.++||||||++++.+.......+..|.......+.+++ .+.++||+|--
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 45899999999999999999999876543233334333333444443 47899999974
No 290
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.00 E-value=5.9e-05 Score=65.22 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=74.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchhhc---cCCc
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAV 173 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~~~---~~a~ 173 (215)
.+=+||-+++|||||++.+...+-. ..++.+...-..-++.+++ ...+.+-|.+|--+ -+.+-..|+ ..++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 4568999999999999999876654 3333221222222444433 23389999998543 334444444 4689
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHhHCC--CCceEEEEee
Q 028037 174 AILFMFDLTSR---CTLNSIVGWYSEARKWNQ--VTKQSLFFHI 212 (215)
Q Consensus 174 ~iilvfdit~~---~Sf~~i~~wl~~i~~~~~--~~~piIlVa~ 212 (215)
..++|.|++.. +-++.++....|+..+.. .+.|.++||.
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaN 320 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVAN 320 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEe
Confidence 99999999998 889999988888887764 4566555543
No 291
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.99 E-value=3.4e-05 Score=66.93 Aligned_cols=101 Identities=21% Similarity=0.312 Sum_probs=72.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEC--CeEEEEEEEecCCCCCCCccchhhccC----Cc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKD----AV 173 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~--~~~~~l~i~Dt~G~e~~~~~~~~~~~~----a~ 173 (215)
.-.|+++||.++|||||+.++-+.+ ......|.+|....+.-+ +...++.+|-..|.-....+....+.. -.
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 5689999999999999999998776 334456777654444332 234778888888876655555444332 24
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhHCC
Q 028037 174 AILFMFDLTSR-CTLNSIVGWYSEARKWNQ 202 (215)
Q Consensus 174 ~iilvfdit~~-~Sf~~i~~wl~~i~~~~~ 202 (215)
.+||+.|++++ .-++++++|..-++++.+
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehid 159 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHID 159 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 67889999999 556788999988877653
No 292
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.99 E-value=2.1e-05 Score=77.92 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=60.4
Q ss_pred CCHHHHHHHHhcCCCCCc-----cccceeeeEEEEEEECC-e----------EE-----EEEEEecCCCCCCCccchhhc
Q 028037 111 IGKTSFVVKYVGNEQERS-----LQMAGLNLINKTLMVQG-A----------RI-----AFSIWDVGGDSRSFDHVPIAC 169 (215)
Q Consensus 111 vGKTSLi~r~~~~~f~~~-----~~t~g~~~~~~~v~~~~-~----------~~-----~l~i~Dt~G~e~~~~~~~~~~ 169 (215)
|+||||+..+.+....+. .+.+|.. .+..+. . .. .+.+|||+|++.|..+....+
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~----~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~ 547 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGAT----EIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGG 547 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceE----EEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhc
Confidence 459999999987665421 1223432 222221 0 11 289999999999988888888
Q ss_pred cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 170 KDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 170 ~~a~~iilvfdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
..+|++++|+|.++ +++++.+..+ +. .++|+++|.
T Consensus 548 ~~aDivlLVVDa~~Gi~~qT~e~I~~l----k~---~~iPiIVVi 585 (1049)
T PRK14845 548 SLADLAVLVVDINEGFKPQTIEAINIL----RQ---YKTPFVVAA 585 (1049)
T ss_pred ccCCEEEEEEECcccCCHhHHHHHHHH----HH---cCCCEEEEE
Confidence 99999999999997 6777766532 22 246765554
No 293
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.93 E-value=5.4e-05 Score=66.51 Aligned_cols=64 Identities=17% Similarity=0.331 Sum_probs=47.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-C----------ccccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-R----------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~----------~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~ 161 (215)
-..+.|+++|++|.|||||++.+++.... + ..+++.+......+.-+|..+.|++.||+|-..+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~ 95 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF 95 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc
Confidence 34789999999999999999999976433 1 1233344555455555788899999999996654
No 294
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.86 E-value=2.8e-05 Score=62.43 Aligned_cols=54 Identities=13% Similarity=0.317 Sum_probs=35.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC--------ccccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQER--------SLQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~~--------~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G 157 (215)
..++++|.+|||||||++.+.+..... .....|.......+.++. .+.|+||+|
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 579999999999999999999754311 111113222233344432 478999998
No 295
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.0001 Score=65.71 Aligned_cols=116 Identities=11% Similarity=0.134 Sum_probs=73.5
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC--CCC-------------------------Ccc---ccceeeeEEEEEEECCe
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGN--EQE-------------------------RSL---QMAGLNLINKTLMVQGA 146 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~--~f~-------------------------~~~---~t~g~~~~~~~v~~~~~ 146 (215)
....++++++|...+|||||+-|++.+ .+. +.. ...|..+......+.-.
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 345789999999999999999998742 111 000 01144444444455555
Q ss_pred EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHH---H---HHHHHHHhHCCCCceEEEEeec
Q 028037 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI---V---GWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i---~---~wl~~i~~~~~~~~piIlVa~~ 213 (215)
.+.++|.|++|+..|-.-.-.-...||+.|||.|..+.+ |+.- . +-.--+.+..+-+--||.|+||
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e-fE~g~~~~gQtrEH~~La~tlGi~~lIVavNKM 155 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE-FEAGFGVGGQTREHAFLARTLGIKQLIVAVNKM 155 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc-cccccccCCchhHHHHHHHhcCCceEEEEEEcc
Confidence 678999999998777655545567899999999998764 2211 1 1111122333345567777775
No 296
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=6.1e-05 Score=66.41 Aligned_cols=62 Identities=11% Similarity=0.308 Sum_probs=45.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCc----------cccceeeeEEEEEEECCeEEEEEEEecCCCCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS----------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~----------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~ 160 (215)
..|.++++|++|.|||||+|.++...+... ..+..+......+.-+|..+.|++.||+|-..
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 369999999999999999999887755421 11334444434444478899999999999543
No 297
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.75 E-value=0.00025 Score=63.79 Aligned_cols=109 Identities=13% Similarity=0.180 Sum_probs=68.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC----CCC-C-----------------ccccceeee---EEEEEEE-CCeEEEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN----EQE-R-----------------SLQMAGLNL---INKTLMV-QGARIAFSIW 153 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~----~f~-~-----------------~~~t~g~~~---~~~~v~~-~~~~~~l~i~ 153 (215)
.+-|-++|+.++|||||+++|++. ... + +..|+..-| ....+.. ++...++.+.
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 578999999999999999999987 322 0 112222222 2223332 5667889999
Q ss_pred ecCCCCCCCc-------c----------------------chhhcc-CCcEEEEEE-eCC----ChhhHHHHH-HHHHHH
Q 028037 154 DVGGDSRSFD-------H----------------------VPIACK-DAVAILFMF-DLT----SRCTLNSIV-GWYSEA 197 (215)
Q Consensus 154 Dt~G~e~~~~-------~----------------------~~~~~~-~a~~iilvf-dit----~~~Sf~~i~-~wl~~i 197 (215)
||+|-..-.. - ....+. .++..|+|. |-+ .++.+.... +|++++
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 9998432100 0 122234 788888887 654 345566654 788888
Q ss_pred HhHCCCCceEEEEe
Q 028037 198 RKWNQVTKQSLFFH 211 (215)
Q Consensus 198 ~~~~~~~~piIlVa 211 (215)
++. ++|+|+|.
T Consensus 177 k~~---~kPfiivl 187 (492)
T TIGR02836 177 KEL---NKPFIILL 187 (492)
T ss_pred Hhc---CCCEEEEE
Confidence 774 47766553
No 298
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.73 E-value=7.2e-05 Score=65.47 Aligned_cols=59 Identities=12% Similarity=0.263 Sum_probs=43.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e 159 (215)
....++.++|-++||||||||++.+..-....+..|.+-....+.++.. +.++||+|--
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 4457899999999999999999998876533333355544455555543 8899999953
No 299
>PRK13768 GTPase; Provisional
Probab=97.71 E-value=4e-05 Score=64.84 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=35.6
Q ss_pred EEEEEecCCCCCCC---ccchhhccC-----CcEEEEEEeCCChhhHHHHH--HHHHHHHhHCCCCceEEEE
Q 028037 149 AFSIWDVGGDSRSF---DHVPIACKD-----AVAILFMFDLTSRCTLNSIV--GWYSEARKWNQVTKQSLFF 210 (215)
Q Consensus 149 ~l~i~Dt~G~e~~~---~~~~~~~~~-----a~~iilvfdit~~~Sf~~i~--~wl~~i~~~~~~~~piIlV 210 (215)
.+.+||++|+.++. .....+++. ++++++++|.+...+..... .|+....... .+.|+++|
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v 168 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPV 168 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEE
Confidence 68899999987743 333333332 89999999997654433332 3443333222 34565444
No 300
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.70 E-value=5.2e-05 Score=63.35 Aligned_cols=61 Identities=13% Similarity=0.322 Sum_probs=45.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC----------CccccceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE----------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~----------~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e 159 (215)
..|+|+++|.+|.|||||++.+...... .+..|+.+...+..+.-++...++++.||+|-.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfG 115 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFG 115 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcc
Confidence 3789999999999999999998754332 122245555555666668889999999999944
No 301
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.70 E-value=0.00042 Score=57.52 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=52.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC--CCC-C-c--cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc------cchh
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN--EQE-R-S--LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPI 167 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~--~f~-~-~--~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~------~~~~ 167 (215)
-.=|.++|+.++|||+|+|++.+. .|. . . ..|.|+......+.. +....+.+.||.|-..... ....
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHH
Confidence 345789999999999999999998 776 2 2 225565544332222 3457899999999764322 1122
Q ss_pred hccC--CcEEEEEEeCCC
Q 028037 168 ACKD--AVAILFMFDLTS 183 (215)
Q Consensus 168 ~~~~--a~~iilvfdit~ 183 (215)
.+.. ++++|+..+.+.
T Consensus 86 ~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 86 ALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHhCEEEEeccCcc
Confidence 2223 677776655443
No 302
>PRK12288 GTPase RsgA; Reviewed
Probab=97.61 E-value=7.4e-05 Score=66.08 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=35.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC--Ccccc---cee--eeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQM---AGL--NLINKTLMVQGARIAFSIWDVGGDSRSF 162 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t---~g~--~~~~~~v~~~~~~~~l~i~Dt~G~e~~~ 162 (215)
-++|+|.+|||||||+|++.+..-. ...+. .|- ......+.+++. ..|.||+|-.++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 4799999999999999999976433 12111 111 111223344322 2489999977654
No 303
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.58 E-value=7.3e-05 Score=59.03 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
--++++|.+|||||||+|.+....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999999763
No 304
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.57 E-value=0.00024 Score=55.26 Aligned_cols=53 Identities=13% Similarity=0.281 Sum_probs=35.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCC-C-CccccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f-~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G 157 (215)
...++++|.++||||||++.+.+..- . ...+.+..+. ..+..+ ..+.+.||+|
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~---~~~~liDtPG 154 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLD---NKIKLLDTPG 154 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEec---CCEEEEECCC
Confidence 57899999999999999999997653 2 2222111111 122332 3488999998
No 305
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00027 Score=67.67 Aligned_cols=112 Identities=12% Similarity=0.095 Sum_probs=80.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC--C------------CCCcc---ccceeeeEEEEEEECCe-EEEEEEEecCCCCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGN--E------------QERSL---QMAGLNLINKTLMVQGA-RIAFSIWDVGGDSR 160 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~--~------------f~~~~---~t~g~~~~~~~v~~~~~-~~~l~i~Dt~G~e~ 160 (215)
..-+|-++|--..|||||..+++.. . +.+.. ..-|+.+.+..+.+.-. .+.+++.||+|+-+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 3568999999999999999998732 1 11111 12255555554444333 68999999999999
Q ss_pred CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~ 213 (215)
|.......++-.|++++|+|...--..+.-.-|.+..+... -++++||||
T Consensus 89 Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~v---p~i~fiNKm 138 (697)
T COG0480 89 FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGV---PRILFVNKM 138 (697)
T ss_pred cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCC---CeEEEEECc
Confidence 99888888899999999999998766666666665543321 357777775
No 306
>PRK12289 GTPase RsgA; Reviewed
Probab=97.56 E-value=0.00015 Score=64.17 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=34.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccce-------eeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAG-------LNLINKTLMVQGARIAFSIWDVGGDSRS 161 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g-------~~~~~~~v~~~~~~~~l~i~Dt~G~e~~ 161 (215)
-++|+|.+|||||||+|.++.+.-.......+ .......+.+++.. .+.||+|-..+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 47999999999999999999664331111111 11112333443222 58899996543
No 307
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.00031 Score=59.13 Aligned_cols=95 Identities=13% Similarity=0.131 Sum_probs=62.3
Q ss_pred eEEEEcCCCC--CHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 102 KISLLGDCQI--GKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 102 KIvllGd~~v--GKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
-++++|.+|| ||.+|+.++...+|. +.......+++.+++........+++.=..-.+++..-.........+++++
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmv 85 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMV 85 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEE
Confidence 4689999999 999999999999998 4444444556655554332222222222222222222222223456799999
Q ss_pred EeCCChhhHHHHHHHHHH
Q 028037 179 FDLTSRCTLNSIVGWYSE 196 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~ 196 (215)
||++....+..++.|+..
T Consensus 86 fdlse~s~l~alqdwl~h 103 (418)
T KOG4273|consen 86 FDLSEKSGLDALQDWLPH 103 (418)
T ss_pred EeccchhhhHHHHhhccc
Confidence 999999999999999973
No 308
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00079 Score=63.37 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=77.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCCCc----------cc------cceeeeEEEEEEE-----CCeEEEEEEEec
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERS----------LQ------MAGLNLINKTLMV-----QGARIAFSIWDV 155 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~----------~~------t~g~~~~~~~v~~-----~~~~~~l~i~Dt 155 (215)
+....++.++|.-..|||+|+.-+.....++. .. ..|..+...-+.+ +++.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 34467899999999999999998886533211 11 1133333322222 577899999999
Q ss_pred CCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF 210 (215)
Q Consensus 156 ~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV 210 (215)
+|+-.|..-....++-+|++++++|+.+--+++. ...+..+- +.+.|+++|
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai---q~~~~i~vv 255 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI---QNRLPIVVV 255 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH---hccCcEEEE
Confidence 9999998888888999999999999998877654 33333322 345676555
No 309
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.46 E-value=0.00026 Score=59.62 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=35.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC--cccc---ce--eeeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQER--SLQM---AG--LNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~~--~~~t---~g--~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~ 162 (215)
-.++++|.+|||||||++++.+..-.. ..+. .| .......+.+++. .|+||+|-..+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccccC
Confidence 478999999999999999999764321 1111 01 1111123333332 689999976653
No 310
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.45 E-value=0.00084 Score=58.70 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=70.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-Cccc-cc-eeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchhhc---cC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQ-MA-GLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KD 171 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~-t~-g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~~~---~~ 171 (215)
-|=+||-+++|||||++.+..-+-. ..++ |+ -.+.. .+.+ ...-.+.+=|.+|--+ -..+-..|+ ..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLG--vV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLG--VVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCccc--EEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 3458999999999999999877655 3334 33 22332 3333 2334588899998543 223333343 46
Q ss_pred CcEEEEEEeCCChh---hHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037 172 AVAILFMFDLTSRC---TLNSIVGWYSEARKWNQ--VTKQSLFFH 211 (215)
Q Consensus 172 a~~iilvfdit~~~---Sf~~i~~wl~~i~~~~~--~~~piIlVa 211 (215)
+.+++.|.|++..+ -.++.+....|+.+|.. .+.|.+||+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~ 282 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVL 282 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEE
Confidence 78999999999765 47777888888888764 345544444
No 311
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.44 E-value=0.00059 Score=60.16 Aligned_cols=39 Identities=23% Similarity=0.437 Sum_probs=34.6
Q ss_pred eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~ 184 (215)
+...+.++|++||.--+.-|..++.+++++|+|.++++.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeY 231 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEY 231 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhh
Confidence 347899999999988888888899999999999999864
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.43 E-value=0.00091 Score=56.21 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
.-.++++|+.|+||||+++.+.+..
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCC
Confidence 3479999999999999999999865
No 313
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00072 Score=62.05 Aligned_cols=105 Identities=9% Similarity=0.002 Sum_probs=73.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~~-~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.=|.++|--.-|||||+-.+-...... ..-.+.-.+.-..+..+ +..-.+.+.||+|++.|..|+..-..-+|.++||
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV 85 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV 85 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence 357899999999999999998776652 11111112222344443 1335689999999999999998888889999999
Q ss_pred EeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 179 FDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
.|++| +++.+.+. .....++|+|+.+.
T Consensus 86 Va~dDGv~pQTiEAI~-------hak~a~vP~iVAiN 115 (509)
T COG0532 86 VAADDGVMPQTIEAIN-------HAKAAGVPIVVAIN 115 (509)
T ss_pred EEccCCcchhHHHHHH-------HHHHCCCCEEEEEe
Confidence 99998 45554443 22235789877653
No 314
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.40 E-value=0.0002 Score=61.59 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=36.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--Ccccc---cee--eeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQM---AGL--NLINKTLMVQGARIAFSIWDVGGDSRSF 162 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t---~g~--~~~~~~v~~~~~~~~l~i~Dt~G~e~~~ 162 (215)
..++++|.+|||||||++.+.+.... ...+. .|. ......+...+. ..++||+|..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 57999999999999999999976543 11110 111 111223333322 2589999987754
No 315
>PRK09866 hypothetical protein; Provisional
Probab=97.39 E-value=0.0012 Score=62.40 Aligned_cols=64 Identities=11% Similarity=0.042 Sum_probs=39.5
Q ss_pred EEEEEEecCCCCCCC-c----cchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE-EEeec
Q 028037 148 IAFSIWDVGGDSRSF-D----HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL-FFHII 213 (215)
Q Consensus 148 ~~l~i~Dt~G~e~~~-~----~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI-lVa~~ 213 (215)
..+.+.||+|-.... . .....+.++|++++|.|.++.-+..+ ....+.+++.. .+.|++ ||+|+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKI 299 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKF 299 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcc
Confidence 457788999986531 2 22346789999999999988544443 23344444433 234655 55654
No 316
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00098 Score=61.48 Aligned_cols=109 Identities=13% Similarity=0.180 Sum_probs=74.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-C----------Ccc---ccceeeeEEEEEE---ECCeEEEEEEEecCCCCCCCcc
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQ-E----------RSL---QMAGLNLINKTLM---VQGARIAFSIWDVGGDSRSFDH 164 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f-~----------~~~---~t~g~~~~~~~v~---~~~~~~~l~i~Dt~G~e~~~~~ 164 (215)
++.++---.=|||||..|++...- . +.. ..-|+.+..++.. .+|+.+.|++.||+|+-.|...
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 455555566799999999974211 1 111 1225555444332 2578899999999999999887
Q ss_pred chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~ 213 (215)
...-+.-++|+||+.|.+.----+.+..++..+... -.+|.+++|+
T Consensus 142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~---L~iIpVlNKI 187 (650)
T KOG0462|consen 142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAG---LAIIPVLNKI 187 (650)
T ss_pred ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcC---CeEEEeeecc
Confidence 777778899999999998865555565555555432 3567777765
No 317
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.38 E-value=0.00041 Score=58.38 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=42.2
Q ss_pred CCCCccchhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceE-EEEee
Q 028037 159 SRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQVTKQS-LFFHI 212 (215)
Q Consensus 159 e~~~~~~~~~~~~a~~iilvfdit~~~-Sf~~i~~wl~~i~~~~~~~~pi-IlVa~ 212 (215)
++|..+.+.+++++|++++|||+++++ ||+.+.+|+..+.. .++|+ |+++|
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK 76 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNK 76 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEC
Confidence 788899999999999999999999887 99999999987754 34554 44444
No 318
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.33 E-value=0.00087 Score=59.63 Aligned_cols=82 Identities=10% Similarity=0.024 Sum_probs=55.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC-C-CccccceeeeEEEEEEECCe---------------EEEEEEEecCCCCC---
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSR--- 160 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f-~-~~~~t~g~~~~~~~v~~~~~---------------~~~l~i~Dt~G~e~--- 160 (215)
+|+-++|.++||||||.+.+.+..- . .++|....+...-.+.+.+. ...+++.|.+|--+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998876 4 44442212222233444332 24688999998543
Q ss_pred -CCccc---hhhccCCcEEEEEEeCC
Q 028037 161 -SFDHV---PIACKDAVAILFMFDLT 182 (215)
Q Consensus 161 -~~~~~---~~~~~~a~~iilvfdit 182 (215)
-..+- -...+.+|+++.|.|..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 22222 23357899999999875
No 319
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.32 E-value=0.0011 Score=55.98 Aligned_cols=96 Identities=21% Similarity=0.276 Sum_probs=63.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC------CC-ccchhhccC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR------SF-DHVPIACKD 171 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~------~~-~~~~~~~~~ 171 (215)
..+|+++|-+.||||||+..+..-... ..+..+......-.+.++|. .+++.|.+|.-+ -+ ...-...+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEeec
Confidence 468999999999999999999866554 33333333444455666664 578899987432 11 122234578
Q ss_pred CcEEEEEEeCCChhhHHHH-HHHHHHH
Q 028037 172 AVAILFMFDLTSRCTLNSI-VGWYSEA 197 (215)
Q Consensus 172 a~~iilvfdit~~~Sf~~i-~~wl~~i 197 (215)
||.++.|.|.+..+--..+ .+-++.+
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 9999999999987654433 3445544
No 320
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.0011 Score=58.74 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=63.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC----ccccceeeeEEEEEE------ECCeE-----------------------
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLM------VQGAR----------------------- 147 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~~----~~~t~g~~~~~~~v~------~~~~~----------------------- 147 (215)
--|+++|.-..||||||+-+++++|+. ..||+ ++...... ++|..
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 458999999999999999999998872 12222 12111111 11111
Q ss_pred ----------EEEEEEecCCCCC-----------CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC
Q 028037 148 ----------IAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (215)
Q Consensus 148 ----------~~l~i~Dt~G~e~-----------~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~ 201 (215)
-+++|.||+|.-. |.....-|...+|.|+++||....+-=++.+.-+..++-+.
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E 211 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE 211 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc
Confidence 1789999998421 33445566788999999998776554445555566665443
No 321
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.30 E-value=0.00019 Score=60.18 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=30.7
Q ss_pred EEEEEecCCCCCCCccchhhc--------cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037 149 AFSIWDVGGDSRSFDHVPIAC--------KDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFF 210 (215)
Q Consensus 149 ~l~i~Dt~G~e~~~~~~~~~~--------~~a~~iilvfdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlV 210 (215)
.+-|+||+||.++...+.... ...-+++++.|..- +.+|-+ .++-.+.-...-+.|.|.|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnv 162 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNV 162 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEE
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEe
Confidence 789999999999766655444 44567888888663 333433 3333322222235675554
No 322
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.21 E-value=0.0023 Score=58.20 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=75.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC--CCCCc-------------cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN--EQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV 165 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~--~f~~~-------------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~ 165 (215)
-+|.++---.=|||||+..++.. .|.+. ....|+.+-.|...++...++++|.||+|+-.|-.-.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 36777777788999999999854 23211 1122566666666666667899999999999998888
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~ 213 (215)
...++=.|+++++.|..+-. .-.-+.-+...... .-.||++|+|+
T Consensus 86 ERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~--gL~PIVVvNKi 130 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL--GLKPIVVINKI 130 (603)
T ss_pred hhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc--CCCcEEEEeCC
Confidence 77888899999999987631 11112222222222 34799999986
No 323
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.20 E-value=0.00021 Score=54.01 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQ 125 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f 125 (215)
-|++++|..|+|||||.+.+.++..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ 26 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT 26 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh
Confidence 3799999999999999999886643
No 324
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.18 E-value=0.00093 Score=59.37 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=35.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC------C-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f------~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~ 160 (215)
.++.++|.+|||||||++++..... . ...+ |.......+.+++ .+.++||+|-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~p--gtT~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFP--GTTLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCC--CeEeeEEEEEeCC---CCEEEECCCCCC
Confidence 3799999999999999999997432 1 1222 2111122333322 256999999653
No 325
>PRK00098 GTPase RsgA; Reviewed
Probab=97.17 E-value=0.00058 Score=59.12 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQ 125 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f 125 (215)
..++++|.+|||||||++.+.+..-
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 4689999999999999999987543
No 326
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0014 Score=58.02 Aligned_cols=83 Identities=17% Similarity=0.109 Sum_probs=57.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEEE----------C----CeEEEEEEEecCCC----
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMV----------Q----GARIAFSIWDVGGD---- 158 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v~~----------~----~~~~~l~i~Dt~G~---- 158 (215)
.+++-++|-++||||||.+.+....-. ..+| |+..+...-.+.. . -....+++.|.+|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999988755 5555 4443333222211 1 12467899999873
Q ss_pred CCCCccchhh---ccCCcEEEEEEeCC
Q 028037 159 SRSFDHVPIA---CKDAVAILFMFDLT 182 (215)
Q Consensus 159 e~~~~~~~~~---~~~a~~iilvfdit 182 (215)
.+=..+-..| ++.+|+++-|.|..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 3334444444 57899999999877
No 327
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.00076 Score=57.63 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=45.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCc-----cccceeeeEEEEEEECCeEEEEEEEecCCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS-----LQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~-----~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~ 158 (215)
-.|+|+.+|..|.|||||+..+.+-.|..+ .+++.....+..+.-.+..+++.|.||.|-
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 479999999999999999999999888732 233344433334444678899999999983
No 328
>PRK13796 GTPase YqeH; Provisional
Probab=97.14 E-value=0.00082 Score=59.83 Aligned_cols=56 Identities=13% Similarity=0.278 Sum_probs=34.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-C----ccccceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-R----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~----~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e 159 (215)
.++.++|.+|||||||+|++...... . ..+.-|.......+.+++. ..++||+|-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 47999999999999999999854311 1 1111122222233444332 3699999963
No 329
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.11 E-value=0.0015 Score=59.88 Aligned_cols=89 Identities=16% Similarity=0.161 Sum_probs=57.6
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCC---CCcc-c--c--ceeeeEEE--------EE---EEC-C----------
Q 028037 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQ---ERSL-Q--M--AGLNLINK--------TL---MVQ-G---------- 145 (215)
Q Consensus 96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f---~~~~-~--t--~g~~~~~~--------~v---~~~-~---------- 145 (215)
.....+.|.++|--..|||||+..+.+-.- .+.. . | .|+..... .. ..+ +
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 345678999999999999999999985322 2111 0 1 12221100 00 010 0
Q ss_pred -----eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037 146 -----ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 146 -----~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~ 184 (215)
....+.+.|++|+++|-.....-...+|++++|.|.++.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g 153 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES 153 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 023689999999998865544556789999999999874
No 330
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.06 E-value=0.0017 Score=56.86 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=56.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC---------------CeEEEEEEEecCCCCC--
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ---------------GARIAFSIWDVGGDSR-- 160 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~---------------~~~~~l~i~Dt~G~e~-- 160 (215)
.++|+=++|-++||||||.+.+.+.... ..+|...+|-..-.+.+. .....|+++|++|--+
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 4789999999999999999999988766 555533222222233331 2357899999997432
Q ss_pred --CCccchhh---ccCCcEEEEEEeCCC
Q 028037 161 --SFDHVPIA---CKDAVAILFMFDLTS 183 (215)
Q Consensus 161 --~~~~~~~~---~~~a~~iilvfdit~ 183 (215)
-..+-..| .+.+|+++-|.+..+
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 23333333 577899887766543
No 331
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.04 E-value=0.00058 Score=58.90 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=35.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--Cccc---ccee--eeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ---MAGL--NLINKTLMVQGARIAFSIWDVGGDSRSF 162 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~---t~g~--~~~~~~v~~~~~~~~l~i~Dt~G~e~~~ 162 (215)
--.+++|.+|||||||+|++..+.-. ...+ ..|- ......+.+++.. .|.||+|-..+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 36789999999999999999863221 1111 0111 1223344553222 367999977654
No 332
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0028 Score=58.66 Aligned_cols=103 Identities=10% Similarity=0.070 Sum_probs=70.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.-=|-++|--.=|||||+..|.+.... ...-.+.-.+.--.+.+. ..-.+++.||+|+..|..|+..-..-+|.++||
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLV 231 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLV 231 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEE
Confidence 345778999999999999999877665 221111111112234443 225688999999999999998888889999999
Q ss_pred EeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037 179 FDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFF 210 (215)
Q Consensus 179 fdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlV 210 (215)
....| +++.+.|+ .....++|+|+.
T Consensus 232 VAadDGVmpQT~EaIk-------hAk~A~VpiVvA 259 (683)
T KOG1145|consen 232 VAADDGVMPQTLEAIK-------HAKSANVPIVVA 259 (683)
T ss_pred EEccCCccHhHHHHHH-------HHHhcCCCEEEE
Confidence 98777 46655543 223357887753
No 333
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.96 E-value=0.0023 Score=64.97 Aligned_cols=106 Identities=13% Similarity=0.024 Sum_probs=64.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Ccc----cc--ceeeeEEEEEEECCeEEEEEEEecCCCC--------CCCccc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSL----QM--AGLNLINKTLMVQGARIAFSIWDVGGDS--------RSFDHV 165 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~----~t--~g~~~~~~~v~~~~~~~~l~i~Dt~G~e--------~~~~~~ 165 (215)
-=.+|||++|+||||++.+- +-+|+ ... .+ .+.+ ......+.+. -.++||+|.- .....|
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t-~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGT-RNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCC-cccceEecCC---EEEEcCCCccccCCCcccccHHHH
Confidence 34689999999999999987 45554 211 11 1111 1111222222 3378999932 122234
Q ss_pred hhhc---------cCCcEEEEEEeCCChhh-----H----HHHHHHHHHHHhHCCCCceEEEEe
Q 028037 166 PIAC---------KDAVAILFMFDLTSRCT-----L----NSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 166 ~~~~---------~~a~~iilvfdit~~~S-----f----~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
..++ +..||+|++.|+.+--+ . ..+...++++.+..+-.+||-||-
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~ 250 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVL 250 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 3333 45899999999886421 1 345578888888777889987764
No 334
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.95 E-value=0.0013 Score=52.20 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=30.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEec
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 155 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt 155 (215)
||++-|++|+|||||+.+++..--....+.-| |++..+.-+|..+-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccce--EEeecccCCCceEEEEEEEC
Confidence 68999999999999999987432111122223 33334444555555555555
No 335
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.78 E-value=0.0073 Score=43.34 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=51.8
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037 103 ISLLG-DCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (215)
Q Consensus 103 IvllG-d~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi 181 (215)
|.+.| .+|+|||++...+...--. .|.. ...+..+.. +.+.+.|+++.... .....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~--vl~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKR--VLLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCc--EEEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence 45666 6799999988766522111 1111 112222222 77889999886532 233566789999998875
Q ss_pred CChhhHHHHHHHHHH
Q 028037 182 TSRCTLNSIVGWYSE 196 (215)
Q Consensus 182 t~~~Sf~~i~~wl~~ 196 (215)
+..++..+..+++.
T Consensus 72 -~~~s~~~~~~~~~~ 85 (104)
T cd02042 72 -SPLDLDGLEKLLET 85 (104)
T ss_pred -CHHHHHHHHHHHHH
Confidence 56678888877763
No 336
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0039 Score=49.24 Aligned_cols=55 Identities=31% Similarity=0.508 Sum_probs=40.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~ 156 (215)
..||.+-|.+||||||++.++.+.=-.+.+ +.| -+++..+.-+|..+=|.|.|.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kvg-Gf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGY-KVG-GFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCc-eee-eEEeeeeecCCeEeeeEEEEcc
Confidence 579999999999999999998743222111 222 3556677778888888888887
No 337
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=96.64 E-value=0.0075 Score=55.07 Aligned_cols=96 Identities=13% Similarity=0.207 Sum_probs=65.4
Q ss_pred EEEcCCCCCHHHHHHHHhcCC--CC---------Cc---cccceeeeEEEEEEE-----CCeEEEEEEEecCCCCCCCcc
Q 028037 104 SLLGDCQIGKTSFVVKYVGNE--QE---------RS---LQMAGLNLINKTLMV-----QGARIAFSIWDVGGDSRSFDH 164 (215)
Q Consensus 104 vllGd~~vGKTSLi~r~~~~~--f~---------~~---~~t~g~~~~~~~v~~-----~~~~~~l~i~Dt~G~e~~~~~ 164 (215)
.++---.=|||||..|+++.. .. +. ....|+.+....+.+ +|+.+.|++.||+|+-.|..-
T Consensus 13 sIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYE 92 (603)
T COG0481 13 SIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYE 92 (603)
T ss_pred EEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEE
Confidence 344444579999999997521 11 11 112245444443333 568899999999999998766
Q ss_pred chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028037 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (215)
Q Consensus 165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~ 199 (215)
....+..+.|.+|+.|.+.--.-+.+...|..+.+
T Consensus 93 VSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~ 127 (603)
T COG0481 93 VSRSLAACEGALLVVDASQGVEAQTLANVYLALEN 127 (603)
T ss_pred ehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc
Confidence 65566788999999999987666667666666654
No 338
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.0053 Score=51.62 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=51.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEE--EEECCeEEEEEEEecCCCCCCCccc---hhhccCCcEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKT--LMVQGARIAFSIWDVGGDSRSFDHV---PIACKDAVAI 175 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~--v~~~~~~~~l~i~Dt~G~e~~~~~~---~~~~~~a~~i 175 (215)
-+|+++|-..+||||+-+--..+--+ ..|.-.+...+. -.+.+.-+.+++||.+||-.+..-. ...+++..+.
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsP--neTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSP--NETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCC--CceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 45999999999999986543322211 112222211111 1123456889999999998754322 3447889999
Q ss_pred EEEEeCCCh
Q 028037 176 LFMFDLTSR 184 (215)
Q Consensus 176 ilvfdit~~ 184 (215)
++|.|..+.
T Consensus 106 ifvIDaQdd 114 (347)
T KOG3887|consen 106 IFVIDAQDD 114 (347)
T ss_pred EEEEechHH
Confidence 999987664
No 339
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.56 E-value=0.012 Score=43.52 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
-.+++.|++|+|||+|++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999988653
No 340
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.56 E-value=0.016 Score=46.36 Aligned_cols=98 Identities=14% Similarity=0.040 Sum_probs=53.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEe--cC-CCCCCCccchhhccCCcEEEE
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWD--VG-GDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~D--t~-G~e~~~~~~~~~~~~a~~iil 177 (215)
-.+.++|+.|+|||||++-+.+-.. ++.| .+.+++..+.+..-+ .+ |+.+--.+......+.+.+++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G------~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI----PNGD------NDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC----CCCc------EEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4788999999999999998886532 2223 122333322221111 22 333333455566667776665
Q ss_pred E--EeCCChhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037 178 M--FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF 210 (215)
Q Consensus 178 v--fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV 210 (215)
= ++--|..+-+.+.+|+.++.+. .+..+|++
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~--~~~tiiiv 128 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEE--GKKTALVV 128 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEE
Confidence 2 2233556666666777766442 22445544
No 341
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.49 E-value=0.0023 Score=47.07 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.|+|.|.+||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 342
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.0037 Score=56.42 Aligned_cols=84 Identities=11% Similarity=0.154 Sum_probs=62.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc--C--------------CCC-----CccccceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG--N--------------EQE-----RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~--~--------------~f~-----~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e 159 (215)
-...+|--+.+|||||..+++- + .+. +-...-|+.+.+-...++...+.++|.||+|++
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 3567888899999999998862 1 111 011123677767777777778899999999999
Q ss_pred CCCccchhhccCCcEEEEEEeCCCh
Q 028037 160 RSFDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 160 ~~~~~~~~~~~~a~~iilvfdit~~ 184 (215)
.|..=....+..+|..+.|.|...-
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKG 117 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKG 117 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccC
Confidence 9987666667789999999998763
No 343
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=96.42 E-value=0.0045 Score=56.74 Aligned_cols=112 Identities=18% Similarity=0.248 Sum_probs=66.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC--Ccc--chh-----hc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDH--VPI-----AC 169 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~--~~~--~~~-----~~ 169 (215)
.-.++++|-++||||||++........ ..++.+.-.++.- .++..-...++.||+|--.- ... +.. ..
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 346899999999999999988877666 4444222222211 12334467888999995431 111 111 11
Q ss_pred cCCcEEEEEEeCCChhhH--HHHHHHHHHHHhHCCCCceEEEEeec
Q 028037 170 KDAVAILFMFDLTSRCTL--NSIVGWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 170 ~~a~~iilvfdit~~~Sf--~~i~~wl~~i~~~~~~~~piIlVa~~ 213 (215)
.--.+++++-|++..+-+ ..=...+..|+-.-..+.-|++++|+
T Consensus 246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~ 291 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKI 291 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecc
Confidence 122567888899976544 33346788887665444556666653
No 344
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.39 E-value=0.015 Score=44.35 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=59.1
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCC
Q 028037 104 SLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 183 (215)
Q Consensus 104 vllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~ 183 (215)
+.-|.+|+|||++...+...--.......-.|.. .......+.+.++|+++.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence 4567899999998776653211111111111110 0001122778999998743 333346688999999998765
Q ss_pred hhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037 184 RCTLNSIVGWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 184 ~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~ 213 (215)
..++..+...++++.+........++++.+
T Consensus 78 ~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~ 107 (139)
T cd02038 78 PTSITDAYALIKKLAKQLRVLNFRVVVNRA 107 (139)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 556666666666665544333445666653
No 345
>PRK08118 topology modulation protein; Reviewed
Probab=96.39 E-value=0.0029 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-||+|+|.+|+|||||..++...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999988753
No 346
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.043 Score=51.13 Aligned_cols=115 Identities=11% Similarity=0.122 Sum_probs=74.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC--------------------CCC-C---------ccccceeeeEEEEEEECCe
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGN--------------------EQE-R---------SLQMAGLNLINKTLMVQGA 146 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~--------------------~f~-~---------~~~t~g~~~~~~~v~~~~~ 146 (215)
+...+.++++|.-.+|||||+-+++.. .+. . ...-.|+....+...++-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 346789999999999999999988641 111 0 0111244444555566666
Q ss_pred EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHH-------HHHHHHHHhHCCCCceEEEEeec
Q 028037 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI-------VGWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i-------~~wl~~i~~~~~~~~piIlVa~~ 213 (215)
...+.|.|.+|+..|..-.-.-...||+.+||.|.+-- .|+.= ++.. .+.+.-+-+--||.++||
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha-~llr~Lgi~qlivaiNKm 325 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHA-LLLRSLGISQLIVAINKM 325 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHH-HHHHHcCcceEEEEeecc
Confidence 78899999999888876555556789999999997642 34431 1222 222333345556667665
No 347
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.35 E-value=0.037 Score=38.12 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=49.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc-chhhccCCcEEEEEEeC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-VPIACKDAVAILFMFDL 181 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~-~~~~~~~a~~iilvfdi 181 (215)
+++.|..|+|||++...+...--. .|. +...++ .+.+.|+++.-..... .......+|.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGK----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCC----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999999877633111 111 122233 6888999876543321 13455678888888875
Q ss_pred CChhhHHHHHHHHHHH
Q 028037 182 TSRCTLNSIVGWYSEA 197 (215)
Q Consensus 182 t~~~Sf~~i~~wl~~i 197 (215)
.. .+........++.
T Consensus 69 ~~-~~~~~~~~~~~~~ 83 (99)
T cd01983 69 EA-LAVLGARRLTEVV 83 (99)
T ss_pred ch-hhHHHHHHHHHHH
Confidence 54 3455555443333
No 348
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.28 E-value=0.0035 Score=47.42 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028037 103 ISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~ 121 (215)
|+++|.+|+|||||+.++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999988
No 349
>PRK07261 topology modulation protein; Provisional
Probab=96.25 E-value=0.0038 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
||+++|.+|+|||||...+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998764
No 350
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.035 Score=49.07 Aligned_cols=84 Identities=13% Similarity=0.176 Sum_probs=55.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--C-c----------cccc-------------------eeeeEEEEEEECC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--R-S----------LQMA-------------------GLNLINKTLMVQG 145 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~-~----------~~t~-------------------g~~~~~~~v~~~~ 145 (215)
...++++-+|.-.=||||||-|++.+.-. + . ..+. |+.+..-...+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 34689999999999999999999864221 0 0 0011 2221112222233
Q ss_pred eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (215)
Q Consensus 146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi 181 (215)
.+-+|-|-||+|+|+|..-.-.-...+|+.|++.|.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA 119 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA 119 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEec
Confidence 445789999999999865554555678888888886
No 351
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.14 E-value=0.0046 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.||+++|++|+||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999865
No 352
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.018 Score=55.16 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=79.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC------------CCC---CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN------------EQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~------------~f~---~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~ 164 (215)
.-+++++---.=|||||+..++.. +|. +...+.|+...+-.+..-.+.+.+++.|++|+-.|...
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se 88 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE 88 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence 346777777788999999988742 222 23345677766666666667899999999999999998
Q ss_pred chhhccCCcEEEEEEeCCCh---hhHHHHH-HHHHHHHhHCCCCceEEEEeec
Q 028037 165 VPIACKDAVAILFMFDLTSR---CTLNSIV-GWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 165 ~~~~~~~a~~iilvfdit~~---~Sf~~i~-~wl~~i~~~~~~~~piIlVa~~ 213 (215)
.....+-+|++++..|+..- ++..-+. .|.+ .-.|+++++|+
T Consensus 89 vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-------~~~~~lvinki 134 (887)
T KOG0467|consen 89 VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-------GLKPILVINKI 134 (887)
T ss_pred hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-------cCceEEEEehh
Confidence 88888999999999998864 3333332 3543 34789999886
No 353
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.08 E-value=0.0037 Score=48.79 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=17.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
||+|.|.+++|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998754
No 354
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.07 E-value=0.01 Score=50.83 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhc
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
....-|+++|-.|+|||||++|+..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHH
Confidence 3467899999999999999999964
No 355
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=96.04 E-value=0.027 Score=47.96 Aligned_cols=37 Identities=27% Similarity=0.500 Sum_probs=33.3
Q ss_pred EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCC
Q 028037 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 183 (215)
Q Consensus 147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~ 183 (215)
.++++++|++||..-+.-|-+++.+..++|+|...++
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSs 237 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSS 237 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccc
Confidence 4679999999999999999999999999999988764
No 356
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.97 E-value=0.0073 Score=44.10 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE 126 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~ 126 (215)
-.++++|++|+|||+++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999866544
No 357
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.94 E-value=0.0068 Score=44.80 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998844
No 358
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.89 E-value=0.0064 Score=46.01 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999998873
No 359
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.88 E-value=0.011 Score=54.19 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=43.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~ 158 (215)
.+.|=+||=++|||||+||.+++.+-..-..|-|-.=.-.++.+.. .+.+.|++|-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 4788999999999999999999998876556666554444555542 4678999983
No 360
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.88 E-value=0.02 Score=43.77 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999865
No 361
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.84 E-value=0.015 Score=54.23 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=49.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
..+-+.++|++|+||||||..++.. |.. .|+. ++......+.|+.-.+++.+++ .....+.. ..+-||.++|.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr-~tk--~ti~-~i~GPiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDLVlLl 140 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRR-FTK--QTID-EIRGPITVVSGKTRRITFLECP--SDLHQMID-VAKIADLVLLL 140 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHH-HHH--hhhh-ccCCceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhheeEEE
Confidence 3578889999999999999988743 221 1111 1111222346778889999887 33333332 23568888888
Q ss_pred EeCCC
Q 028037 179 FDLTS 183 (215)
Q Consensus 179 fdit~ 183 (215)
.|-+-
T Consensus 141 Idgnf 145 (1077)
T COG5192 141 IDGNF 145 (1077)
T ss_pred ecccc
Confidence 88664
No 362
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.82 E-value=0.052 Score=47.83 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028037 100 SLKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~ 121 (215)
.+-|-+.|.+|+|||||+..+.
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~ 77 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALG 77 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999764
No 363
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.76 E-value=0.05 Score=39.59 Aligned_cols=98 Identities=11% Similarity=0.082 Sum_probs=57.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCC
Q 028037 105 LLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 183 (215)
Q Consensus 105 llGd~~vGKTSLi~r~~~~~f~~-~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~ 183 (215)
+=+.+|+|||++...+...--.. .......|.. ... ...+.|.|+++.... .....+..+|.++++.+ .+
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~-~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~-~~ 75 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQF-GDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQ-QD 75 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCC-CCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEec-CC
Confidence 34678999999877765321111 2222222211 111 117889999986533 23345678899998886 45
Q ss_pred hhhHHHHHHHHHHHHhHCCC--CceEEEEe
Q 028037 184 RCTLNSIVGWYSEARKWNQV--TKQSLFFH 211 (215)
Q Consensus 184 ~~Sf~~i~~wl~~i~~~~~~--~~piIlVa 211 (215)
..|+..+..+++.+++...+ ....+|++
T Consensus 76 ~~s~~~~~~~~~~l~~~~~~~~~~~~lVvN 105 (106)
T cd03111 76 LPSIRNAKRLLELLRVLDYSLPAKIELVLN 105 (106)
T ss_pred hHHHHHHHHHHHHHHHcCCCCcCceEEEec
Confidence 56788888888887765532 33344443
No 364
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.71 E-value=0.0083 Score=44.53 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-+++.|++|+|||++++++...
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999865
No 365
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.71 E-value=0.0079 Score=47.23 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=16.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.--+++.|++|+|||+|++++..
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998763
No 366
>PRK06217 hypothetical protein; Validated
Probab=95.66 E-value=0.01 Score=47.42 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.||+|+|.+|+|||||..++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 367
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.64 E-value=0.011 Score=45.25 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 368
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.62 E-value=0.011 Score=47.42 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.++|+|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999654
No 369
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.60 E-value=0.013 Score=39.37 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
|.+.|.+|+|||++.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999988844
No 370
>PF05729 NACHT: NACHT domain
Probab=95.59 E-value=0.01 Score=45.50 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
++|.|++|+|||+++.+++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999998854
No 371
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.59 E-value=0.011 Score=44.38 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 6899999999999999987755
No 372
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.57 E-value=0.015 Score=38.58 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=17.9
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028037 102 KISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~ 121 (215)
-.++.|+.|+|||||+..+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38999999999999998775
No 373
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.56 E-value=0.012 Score=48.64 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQE 126 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~ 126 (215)
.++++|++|+|||||+..+..-+-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~ 54 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEP 54 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCC
Confidence 6899999999999999998865543
No 374
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.54 E-value=0.011 Score=46.63 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-++++|++|+|||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999987653
No 375
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.52 E-value=0.13 Score=47.09 Aligned_cols=102 Identities=14% Similarity=0.263 Sum_probs=59.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-Ccc----c--cce----------------eeeEEEEEEEC------------
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSL----Q--MAG----------------LNLINKTLMVQ------------ 144 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~----~--t~g----------------~~~~~~~v~~~------------ 144 (215)
.-+|+++|+.|||||||+.-+++.--+ +.. . .+| .+|-...+++.
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG 692 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG 692 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh
Confidence 458999999999999999988753211 000 0 000 01111111111
Q ss_pred --CeEEEEEEEecCCCCCCC-ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC
Q 028037 145 --GARIAFSIWDVGGDSRSF-DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202 (215)
Q Consensus 145 --~~~~~l~i~Dt~G~e~~~-~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~ 202 (215)
...-.+.|-|..|....+ .+....+...|++|+ =..||--..++|...-+.|+.+.+
T Consensus 693 L~sHAHTikikdLSGGQKaRValaeLal~~PDvlIL-DEPTNNLDIESIDALaEAIney~G 752 (807)
T KOG0066|consen 693 LASHAHTIKIKDLSGGQKARVALAELALGGPDVLIL-DEPTNNLDIESIDALAEAINEYNG 752 (807)
T ss_pred hhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEe-cCCCCCcchhhHHHHHHHHHhccC
Confidence 112367888988776655 344556677777665 344554456667777777777763
No 376
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.50 E-value=0.024 Score=47.02 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
=..++|++|+|||||+..|..
T Consensus 35 VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHh
Confidence 357999999999999998863
No 377
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.49 E-value=0.012 Score=43.29 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
|+|.|.+||||||+++.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988754
No 378
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.49 E-value=0.021 Score=46.57 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=21.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
...-|+|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3567889999999999999999754
No 379
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.46 E-value=0.013 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.|+++|++|+|||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999864
No 380
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.45 E-value=0.023 Score=50.36 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGNEQ 125 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~~f 125 (215)
+.++|++||||||+++.+.+=+.
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 67999999999999999886544
No 381
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.44 E-value=0.013 Score=47.22 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.=|+|+|++|+|||||+++++..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34899999999999999999865
No 382
>PF13173 AAA_14: AAA domain
Probab=95.44 E-value=0.012 Score=44.15 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQ 125 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f 125 (215)
-+++.|+.+||||+|+.++.....
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999986543
No 383
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.38 E-value=0.015 Score=47.36 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
++|.++|+.|+|||||++++.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999988753
No 384
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.0094 Score=53.50 Aligned_cols=82 Identities=12% Similarity=0.183 Sum_probs=55.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT 182 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit 182 (215)
|.++|..|+|||||+.-+.+- +.|..| .+.+||+.+ |-..-|+|+.+....+.+-+.|==.+...
T Consensus 352 vFliG~NGsGKST~~~LLtGL----~~PqsG------~I~ldg~pV-----~~e~ledYR~LfSavFsDyhLF~~ll~~e 416 (546)
T COG4615 352 VFLIGGNGSGKSTLAMLLTGL----YQPQSG------EILLDGKPV-----SAEQLEDYRKLFSAVFSDYHLFDQLLGPE 416 (546)
T ss_pred EEEECCCCCcHHHHHHHHhcc----cCCCCC------ceeECCccC-----CCCCHHHHHHHHHHHhhhHhhhHhhhCCc
Confidence 688999999999999887755 334444 344566553 33334567777766666655544445555
Q ss_pred ChhhHHHHHHHHHHHHh
Q 028037 183 SRCTLNSIVGWYSEARK 199 (215)
Q Consensus 183 ~~~Sf~~i~~wl~~i~~ 199 (215)
...|-+.+..|++.+.-
T Consensus 417 ~~as~q~i~~~LqrLel 433 (546)
T COG4615 417 GKASPQLIEKWLQRLEL 433 (546)
T ss_pred cCCChHHHHHHHHHHHH
Confidence 55788899999998853
No 385
>PRK10646 ADP-binding protein; Provisional
Probab=95.33 E-value=0.053 Score=42.48 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-|++-||-|+|||||++-+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 386
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.12 Score=49.23 Aligned_cols=101 Identities=12% Similarity=0.184 Sum_probs=58.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccccc----------eeee-----------------------------
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMA----------GLNL----------------------------- 136 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~----------g~~~----------------------------- 136 (215)
....||++.|+.+.||||+++.++..+.- +-.+++ |.+-
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 34679999999999999999999764432 111111 0000
Q ss_pred ---EEEEEEECCeE-----EEEEEEecCCCC---CCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028037 137 ---INKTLMVQGAR-----IAFSIWDVGGDS---RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (215)
Q Consensus 137 ---~~~~v~~~~~~-----~~l~i~Dt~G~e---~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~ 199 (215)
.--.+..+... =.+.+.|.+|-+ ....-...++.++|++|+|-+--|..+..+ +.++....+
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~ 259 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE 259 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc
Confidence 00011111111 145677778754 345566778899999999977666544333 344444433
No 387
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.30 E-value=0.015 Score=48.85 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
=|.++|++|||||||++-..+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988754
No 388
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=95.30 E-value=0.048 Score=47.79 Aligned_cols=97 Identities=12% Similarity=0.076 Sum_probs=57.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC--ccchh------hccC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF--DHVPI------ACKD 171 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~--~~~~~------~~~~ 171 (215)
--|.++|-.++|||||++++..-... +..-.-..|...+....... -.+-+-||.|--.-- .+... ....
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATLeeVae 257 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATLEEVAE 257 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHHHHHhh
Confidence 46889999999999999999854433 22111122222233333222 235678999843211 11111 2357
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028037 172 AVAILFMFDLTSRCTLNSIVGWYSEAR 198 (215)
Q Consensus 172 a~~iilvfdit~~~Sf~~i~~wl~~i~ 198 (215)
+|.++-|.|+++++-=+....-+.-++
T Consensus 258 adlllHvvDiShP~ae~q~e~Vl~vL~ 284 (410)
T KOG0410|consen 258 ADLLLHVVDISHPNAEEQRETVLHVLN 284 (410)
T ss_pred cceEEEEeecCCccHHHHHHHHHHHHH
Confidence 899999999999865444444444443
No 389
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.24 E-value=0.014 Score=48.62 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-+.++|++|+|||||++-+-.-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999987643
No 390
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.22 E-value=0.042 Score=52.75 Aligned_cols=95 Identities=19% Similarity=0.193 Sum_probs=66.2
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-C----ccccceeeeEEEE--------EEECCe----EEEEEEEecCCC
Q 028037 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-R----SLQMAGLNLINKT--------LMVQGA----RIAFSIWDVGGD 158 (215)
Q Consensus 96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~----~~~t~g~~~~~~~--------v~~~~~----~~~l~i~Dt~G~ 158 (215)
.+.+.-=|+++|--..|||-|+..+.+.... . -...+|.+|.... +.-+++ ---+.+.||+|+
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 3566677999999999999999998875443 1 1224455554321 101111 113678899999
Q ss_pred CCCCccchhhccCCcEEEEEEeCCC---hhhHHHH
Q 028037 159 SRSFDHVPIACKDAVAILFMFDLTS---RCTLNSI 190 (215)
Q Consensus 159 e~~~~~~~~~~~~a~~iilvfdit~---~~Sf~~i 190 (215)
|.|..++.....-+|.+|+|.||.. +++.+++
T Consensus 551 EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi 585 (1064)
T KOG1144|consen 551 ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI 585 (1064)
T ss_pred hhhhhhhhccccccceEEEEeehhccCCcchhHHH
Confidence 9999999999999999999999985 4444443
No 391
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.17 E-value=0.019 Score=42.32 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028037 101 LKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~ 121 (215)
-.++++|++|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 358999999999999999977
No 392
>PRK14530 adenylate kinase; Provisional
Probab=95.16 E-value=0.018 Score=47.09 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028037 101 LKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~ 121 (215)
.+|+|+|.+|+||||+...+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999886
No 393
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.13 E-value=0.03 Score=51.96 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
=++.++|++|+|||||++-+.+-
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38899999999999999988754
No 394
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.12 E-value=0.018 Score=50.78 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~~ 124 (215)
++++|++|||||||++-+.+-+
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999987643
No 395
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.11 E-value=0.027 Score=42.51 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-|++-||-|+|||||++.+...
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999988753
No 396
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.11 E-value=0.1 Score=47.58 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=19.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028037 100 SLKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~ 121 (215)
..-|+++|.+||||||++.++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999885
No 397
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.09 E-value=0.018 Score=44.26 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-|.++|..++|||||+..+++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999874
No 398
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.08 E-value=0.02 Score=48.16 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.++++++|.+|+|||+|+..++..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 589999999999999999988754
No 399
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.08 E-value=0.019 Score=46.31 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
--|+++|++|+|||||+..+...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999988754
No 400
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.08 E-value=0.016 Score=47.54 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-++++|++|+|||||+|-..+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 589999999999999997654
No 401
>PRK08233 hypothetical protein; Provisional
Probab=95.04 E-value=0.024 Score=44.57 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-|.+.|.+|+|||||..++..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5677889999999999999874
No 402
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.021 Score=46.11 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
.=+++.|++|||||||++.+....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999998765
No 403
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.01 E-value=0.021 Score=45.11 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028037 102 KISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~ 121 (215)
.|+++|.+|+||||++..+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999887
No 404
>PRK03839 putative kinase; Provisional
Probab=95.00 E-value=0.022 Score=45.14 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
+|+++|.+|+||||+..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988653
No 405
>PRK13695 putative NTPase; Provisional
Probab=95.00 E-value=0.022 Score=44.95 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
+||.+.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998653
No 406
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=94.97 E-value=0.097 Score=45.20 Aligned_cols=74 Identities=15% Similarity=0.083 Sum_probs=44.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhcc--CCcEEEEEE
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK--DAVAILFMF 179 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~--~a~~iilvf 179 (215)
.|++.|.+|+||||+++.+-...+. .+++.. ..+ +..+...... ..+.+.++.
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~~~g~~---------------~~d~~~--~~L--------~~~l~~~~~~~~~~~~~av~i 62 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALEDLGYY---------------CVDNLP--PSL--------LPKLVELLAQSGGIRKVAVVI 62 (288)
T ss_pred EEEEECCCCCcHHHHHHHHHHcCCe---------------EECCcC--HHH--------HHHHHHHHHhcCCCCCeEEEE
Confidence 6899999999999999998532221 112211 111 1122111111 135577788
Q ss_pred eCCChhhHHHHHHHHHHHHhH
Q 028037 180 DLTSRCTLNSIVGWYSEARKW 200 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~ 200 (215)
|+.+.+.++....++..+++.
T Consensus 63 D~r~~~~~~~~~~~~~~L~~~ 83 (288)
T PRK05416 63 DVRSRPFFDDLPEALDELRER 83 (288)
T ss_pred ccCchhhHHHHHHHHHHHHHc
Confidence 998877556677777777764
No 407
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.92 E-value=0.067 Score=41.65 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
=|++-||=|+|||||.+-+..+
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~ 48 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKG 48 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHH
Confidence 4788999999999999988744
No 408
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.89 E-value=0.023 Score=45.75 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028037 103 ISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~ 122 (215)
|.+.|++|+|||||++.+.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999998865
No 409
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.87 E-value=0.021 Score=46.14 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
--++|.|+.|+|||||++.+....
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHh
Confidence 457888999999999999998654
No 410
>PRK14532 adenylate kinase; Provisional
Probab=94.86 E-value=0.025 Score=45.07 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
+|+++|.+|+||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998874
No 411
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.79 E-value=0.12 Score=44.01 Aligned_cols=85 Identities=11% Similarity=0.063 Sum_probs=44.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~--~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
-+++.|..|+||||+++.++..-.... .-++. |. ..+.+.+ ...+++..-. ...|.......++..--+|++-
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiE-dp--~E~~~~~-~~q~~v~~~~-~~~~~~~l~~~lR~~PD~i~vg 156 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVE-DP--VEYQIPG-INQVQVNEKA-GLTFARGLRAILRQDPDIIMVG 156 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC-CC--ceecCCC-ceEEEeCCcC-CcCHHHHHHHHhccCCCEEEec
Confidence 489999999999999998875432211 01111 10 0111222 1223322111 1234444555555444455677
Q ss_pred eCCChhhHHHHH
Q 028037 180 DLTSRCTLNSIV 191 (215)
Q Consensus 180 dit~~~Sf~~i~ 191 (215)
.+.+.+++..+.
T Consensus 157 EiR~~e~a~~~~ 168 (264)
T cd01129 157 EIRDAETAEIAV 168 (264)
T ss_pred cCCCHHHHHHHH
Confidence 888888766543
No 412
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.79 E-value=0.025 Score=45.04 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
+|+++|.+|+||||+...+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
No 413
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=94.77 E-value=0.13 Score=46.11 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=46.1
Q ss_pred eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhHC-CCCceEEEE
Q 028037 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC----------TLNSIVGWYSEARKWN-QVTKQSLFF 210 (215)
Q Consensus 146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~----------Sf~~i~~wl~~i~~~~-~~~~piIlV 210 (215)
....+.++|++||...+.-|..++.+.+++|+|.|+++-+ .+.+.-..++++-... =.+.|+||+
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~ 309 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILF 309 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEE
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEe
Confidence 3467899999999988899999999999999999987432 2433344455543322 146776664
No 414
>PRK01889 GTPase RsgA; Reviewed
Probab=94.75 E-value=0.032 Score=49.58 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
-+++++|.+|+|||||++.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999998643
No 415
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=94.74 E-value=0.13 Score=44.27 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=45.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc-cceeeeEEEEEEECCeEEEEEEEecCC----------CCCCCccc
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHV 165 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G----------~e~~~~~~ 165 (215)
.....++++|-++||||||++.++...-. .... +.|..-....+.++ -.+.+.|.+| .+++..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhH
Confidence 44678999999999999999999877655 3332 44433222233333 3456678888 22344566
Q ss_pred hhhccCC
Q 028037 166 PIACKDA 172 (215)
Q Consensus 166 ~~~~~~a 172 (215)
..|+.+-
T Consensus 211 ~~Y~leR 217 (320)
T KOG2486|consen 211 KSYLLER 217 (320)
T ss_pred HHHHHhh
Confidence 6666443
No 416
>PRK13949 shikimate kinase; Provisional
Probab=94.72 E-value=0.029 Score=44.42 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
+|+++|.+|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999997763
No 417
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.72 E-value=0.027 Score=47.16 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999998875
No 418
>PRK14531 adenylate kinase; Provisional
Probab=94.70 E-value=0.029 Score=44.73 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..+|+++|.+|+||||+..++..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998854
No 419
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.68 E-value=0.03 Score=44.74 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028037 101 LKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~ 121 (215)
-.+.++|++|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999875
No 420
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.67 E-value=0.03 Score=44.70 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
=|+++|++||||+|++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3899999999999999999877
No 421
>PRK02496 adk adenylate kinase; Provisional
Probab=94.65 E-value=0.032 Score=44.35 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+++++|.+|+||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 422
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.65 E-value=0.024 Score=44.04 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
|+++|.+|+||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999987643
No 423
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.64 E-value=0.04 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..-|.+.|.+|+|||||++.+.+
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 46688999999999999998874
No 424
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.62 E-value=0.03 Score=44.60 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028037 103 ISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~ 122 (215)
++|+|++|+|||+|.++++.
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999985
No 425
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.61 E-value=0.033 Score=45.44 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
No 426
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.59 E-value=0.029 Score=47.07 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+++.|++|+|||+|++.+...
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5889999999999999999754
No 427
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.59 E-value=0.03 Score=44.73 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-+.++|.+|+|||||+.+++.
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 3578999999999999999884
No 428
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=94.59 E-value=0.07 Score=46.76 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
.+.|+|++|+|||||++.+.+-.
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58899999999999999998654
No 429
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.58 E-value=0.077 Score=44.50 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
.+.++|+.|+|||||++-+.+..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999988654
No 430
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.54 E-value=0.035 Score=45.12 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
....|.+.|.+|+|||||.+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998864
No 431
>PF13479 AAA_24: AAA domain
Probab=94.54 E-value=0.026 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHH
Q 028037 99 VSLKISLLGDCQIGKTSFVVKY 120 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~ 120 (215)
..+|++|.|++|+|||+|+..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 3689999999999999999998
No 432
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.52 E-value=0.031 Score=45.60 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
||+|+|.+|+||||+..++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 433
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.49 E-value=0.036 Score=46.85 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
=+++++|++|+|||||++.+.+.-
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 489999999999999999988653
No 434
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.49 E-value=0.037 Score=44.34 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-.++++|+.|+|||||++.+++-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999988754
No 435
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.48 E-value=0.033 Score=44.01 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028037 103 ISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~ 122 (215)
|+++|.+|+||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998864
No 436
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.46 E-value=0.037 Score=45.10 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998865
No 437
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.45 E-value=0.035 Score=46.32 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.||+++|.+|+||||+..++..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998864
No 438
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.45 E-value=0.034 Score=47.18 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
=+.++|+.|+|||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999875
No 439
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.44 E-value=0.034 Score=42.21 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
+++.|++|+|||+|+..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998754
No 440
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.37 E-value=0.039 Score=45.74 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999988754
No 441
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.36 E-value=0.04 Score=44.55 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999998865
No 442
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=94.35 E-value=0.039 Score=49.40 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=21.8
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHh
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~ 121 (215)
....+||+++|.+++|||||++++.
T Consensus 55 ~~~~~kiLLLG~geSGKSTi~KQ~r 79 (389)
T PF00503_consen 55 SKREIKILLLGSGESGKSTILKQMR 79 (389)
T ss_dssp HHEEEEEEEEESTTSSHHHHHHHHH
T ss_pred hhccceEEEECCCCcchhhHHHHHH
Confidence 3467899999999999999999773
No 443
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.35 E-value=0.041 Score=44.61 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998864
No 444
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=94.35 E-value=0.19 Score=42.86 Aligned_cols=86 Identities=16% Similarity=0.293 Sum_probs=56.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECC----eEEEEEEEecCCCCCC----C---ccchh
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG----ARIAFSIWDVGGDSRS----F---DHVPI 167 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~----~~~~l~i~Dt~G~e~~----~---~~~~~ 167 (215)
..+|-++|-+.|||||++..+.+-.-+ ..+. .+.-..+.| +.-++++.|.+|.-+- + ...-.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasye------fttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvia 132 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYE------FTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIA 132 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCcccccc------ceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEE
Confidence 458899999999999999998855333 2111 111222222 3357899999985331 1 12223
Q ss_pred hccCCcEEEEEEeCCChhhHHHHH
Q 028037 168 ACKDAVAILFMFDLTSRCTLNSIV 191 (215)
Q Consensus 168 ~~~~a~~iilvfdit~~~Sf~~i~ 191 (215)
..+.++.+++|.|+-.+-+-..+.
T Consensus 133 vartcnli~~vld~~kp~~hk~~i 156 (358)
T KOG1487|consen 133 VARTCNLIFIVLDVLKPLSHKKII 156 (358)
T ss_pred EeecccEEEEEeeccCcccHHHHH
Confidence 357789999999999987766653
No 445
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.33 E-value=0.065 Score=51.43 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
++.++|++|+|||||++-+.+-
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl 502 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGF 502 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999988864
No 446
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.33 E-value=0.035 Score=40.45 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
|.+-|++|+|||+|++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999997744
No 447
>PHA00729 NTP-binding motif containing protein
Probab=94.31 E-value=0.04 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+|++.|.+|||||+|..++...
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998653
No 448
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=94.31 E-value=0.059 Score=46.81 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=35.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccccc----eeeeEEE-EEEECCeEEEEEEEecCCCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMA----GLNLINK-TLMVQGARIAFSIWDVGGDS 159 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~----g~~~~~~-~v~~~~~~~~l~i~Dt~G~e 159 (215)
..+.++++|-++||||||++........ .-..++ |...... .+.+.... .+.+.||+|.-
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGil 207 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGIL 207 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCcC
Confidence 3789999999999999999977644332 111122 2222111 13333222 36788999943
No 449
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.31 E-value=0.041 Score=43.64 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+|+++|.+|+||||+...+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999874
No 450
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.29 E-value=0.044 Score=44.24 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 451
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.27 E-value=0.15 Score=45.87 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=52.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-Ccccccee---eeE---------------EEEEEE------------CCeEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGL---NLI---------------NKTLMV------------QGARI 148 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~---~~~---------------~~~v~~------------~~~~~ 148 (215)
.-.|+++|+.||||||-+-++...-.. .....+++ |.| ...+.+ .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 567899999999999977655432220 11111111 100 000111 11246
Q ss_pred EEEEEecCCCCCCCccc----hhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028037 149 AFSIWDVGGDSRSFDHV----PIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (215)
Q Consensus 149 ~l~i~Dt~G~e~~~~~~----~~~~~--~a~~iilvfdit~~~Sf~~i~~wl~~i~~ 199 (215)
.+-+.||+|...++... ..|+. ...-+.||.+.+.. .+.++..++.+..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~ 337 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL 337 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc
Confidence 88999999988876533 22222 22345567777764 3355555555543
No 452
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.27 E-value=0.041 Score=44.68 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999864
No 453
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.24 E-value=0.037 Score=44.97 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028037 101 LKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~ 121 (215)
..++++|+.||||||.+-++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHH
Confidence 358999999999999988775
No 454
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.24 E-value=0.042 Score=43.87 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999988764
No 455
>PLN02165 adenylate isopentenyltransferase
Probab=94.23 E-value=0.09 Score=46.30 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
--++|+|++|+|||+|...+...
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999987643
No 456
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.23 E-value=0.27 Score=43.52 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
..+|++.|+.|+|||||++.++..
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcc
Confidence 468999999999999999999854
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.23 E-value=0.13 Score=41.67 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
|++.|++|+||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987644
No 458
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.046 Score=44.35 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999865
No 459
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.22 E-value=0.043 Score=44.69 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
...|.++|..|+|||||+++++..
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999998753
No 460
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.21 E-value=0.046 Score=44.38 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999865
No 461
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.20 E-value=0.046 Score=44.32 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
No 462
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.19 E-value=0.077 Score=45.18 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=16.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028037 103 ISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~ 121 (215)
++++|++|+||||+++-..
T Consensus 30 ~vliGpSGsGKTTtLkMIN 48 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMIN 48 (309)
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 6899999999999876543
No 463
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.046 Score=45.18 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
No 464
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.16 E-value=0.047 Score=44.35 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999988764
No 465
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.15 E-value=0.046 Score=44.63 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
=.+.++|+.|+|||||++-+.+-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999988754
No 466
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.15 E-value=0.048 Score=44.61 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-.+.++|+.|+|||||++-+.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999998864
No 467
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.14 E-value=0.048 Score=44.61 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998865
No 468
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.13 E-value=0.049 Score=44.30 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998864
No 469
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.12 E-value=0.071 Score=50.02 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
=|+.++|++|+|||||++-+.+-
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999988864
No 470
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.11 E-value=0.047 Score=41.74 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
+++.|.+|+||||+...+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 689999999999999988754
No 471
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.11 E-value=0.044 Score=48.04 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-+|+++|.+|+|||||++.+..
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~ 184 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAA 184 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999875
No 472
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.10 E-value=0.049 Score=44.75 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
.+.++|+.|+|||||++-+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68899999999999999988654
No 473
>PRK14528 adenylate kinase; Provisional
Probab=94.09 E-value=0.048 Score=43.76 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028037 101 LKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~ 121 (215)
.+|+++|++|+||||+.+.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la 22 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILC 22 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999886
No 474
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.07 E-value=0.05 Score=44.41 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999865
No 475
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.04 E-value=0.048 Score=45.13 Aligned_cols=22 Identities=23% Similarity=0.381 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
No 476
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.04 E-value=0.051 Score=43.08 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999854
No 477
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.03 E-value=0.052 Score=44.26 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999998865
No 478
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.03 E-value=0.082 Score=49.73 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-++.++|++|+|||||++-+.+-
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999988754
No 479
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.02 E-value=0.052 Score=44.86 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 480
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.01 E-value=0.052 Score=44.67 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999865
No 481
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.01 E-value=0.051 Score=44.49 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999998865
No 482
>PRK06547 hypothetical protein; Provisional
Probab=94.00 E-value=0.058 Score=42.92 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|++.|.+|+|||||...+..
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56788889999999999999864
No 483
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.99 E-value=0.05 Score=44.88 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
=.+.++|+.|+|||||++.+.+-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37889999999999999998865
No 484
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.98 E-value=0.055 Score=43.68 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
=.+.++|+.|+|||||++-+.+..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999887653
No 485
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.97 E-value=0.051 Score=44.37 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999865
No 486
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.97 E-value=0.051 Score=42.49 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028037 103 ISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~ 122 (215)
+.++|.+|+|||||+.++..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999885
No 487
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.97 E-value=0.049 Score=43.15 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028037 103 ISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~ 122 (215)
|++.|..|+||||+++++.+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999863
No 488
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.96 E-value=0.058 Score=42.24 Aligned_cols=86 Identities=15% Similarity=0.248 Sum_probs=48.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeE-------------EEEEEEecCCCC-CCCccchh
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR-------------IAFSIWDVGGDS-RSFDHVPI 167 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~-------------~~l~i~Dt~G~e-~~~~~~~~ 167 (215)
.+.++|+.|+|||||++-+.+...+ +.|. +.+++.. +- .+.+.+|.+ +--.+...
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~----~~G~------v~~~g~~~~~~~~~~~~~~~i~-~~~qLS~G~~qrl~lara 96 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKP----DSGE------ILVDGKEVSFASPRDARRAGIA-MVYQLSVGERQMVEIARA 96 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC----CCeE------EEECCEECCcCCHHHHHhcCeE-EEEecCHHHHHHHHHHHH
Confidence 6889999999999999988865332 1221 1111111 11 112233322 22234455
Q ss_pred hccCCcEEEE--EEeCCChhhHHHHHHHHHHHH
Q 028037 168 ACKDAVAILF--MFDLTSRCTLNSIVGWYSEAR 198 (215)
Q Consensus 168 ~~~~a~~iil--vfdit~~~Sf~~i~~wl~~i~ 198 (215)
.+.+.+.+++ -++--|..+-+.+.+++.++.
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~ 129 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLR 129 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 6677777766 334446666666667776664
No 489
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.96 E-value=0.055 Score=43.46 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
.+.++|+.|+|||||++-+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998753
No 490
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.96 E-value=0.056 Score=43.90 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
.+.++|+.|+|||||++-+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999888653
No 491
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.95 E-value=0.05 Score=42.98 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-|++.|.+|+||||+.+.+...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999988754
No 492
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.94 E-value=0.052 Score=44.82 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6889999999999999988864
No 493
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.93 E-value=0.053 Score=42.79 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
+++.|++|+|||+|..+|...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999998643
No 494
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=93.93 E-value=0.082 Score=50.95 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
++.++|++|+|||||++-+.+-
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8899999999999999988764
No 495
>PRK06762 hypothetical protein; Provisional
Probab=93.92 E-value=0.052 Score=42.27 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.-|++.|.+|+||||+...+...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999988643
No 496
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.92 E-value=0.053 Score=43.89 Aligned_cols=22 Identities=27% Similarity=0.304 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999865
No 497
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.91 E-value=0.053 Score=44.37 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
+|+|+|.+|+||||+...+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988763
No 498
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.91 E-value=0.047 Score=45.12 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028037 103 ISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~ 122 (215)
|.+.|.+|+|||||++.+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 56899999999999988763
No 499
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.90 E-value=0.055 Score=45.56 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
-.+.++|+.|+|||||++-+.+-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998653
No 500
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.90 E-value=0.051 Score=49.02 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
....+|+|+|.+|+|||||++.+...
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34569999999999999999998743
Done!