Query 028037
Match_columns 215
No_of_seqs 262 out of 1523
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 08:06:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.9E-30 6.6E-35 212.9 13.4 118 95-212 8-126 (216)
2 2a5j_A RAS-related protein RAB 99.9 2.6E-24 8.9E-29 170.9 16.1 114 98-211 19-133 (191)
3 2gf9_A RAS-related protein RAB 99.9 7.2E-24 2.5E-28 167.9 18.0 113 99-211 21-134 (189)
4 2ew1_A RAS-related protein RAB 99.9 2.6E-24 8.8E-29 173.7 15.3 114 98-211 24-138 (201)
5 2hup_A RAS-related protein RAB 99.9 1.5E-24 5.1E-29 174.3 13.4 115 98-212 27-142 (201)
6 3c5c_A RAS-like protein 12; GD 99.9 3.7E-24 1.3E-28 170.0 14.8 114 97-212 18-135 (187)
7 1ek0_A Protein (GTP-binding pr 99.9 1.2E-23 4.1E-28 162.2 16.2 113 99-211 2-115 (170)
8 2fu5_C RAS-related protein RAB 99.9 3.9E-24 1.3E-28 168.0 13.5 114 99-212 7-121 (183)
9 1r2q_A RAS-related protein RAB 99.9 1.3E-23 4.6E-28 162.0 15.9 114 98-211 4-118 (170)
10 2oil_A CATX-8, RAS-related pro 99.9 1.5E-23 5.1E-28 166.4 16.5 114 98-211 23-137 (193)
11 3q3j_B RHO-related GTP-binding 99.9 7E-24 2.4E-28 172.3 14.9 116 95-212 22-139 (214)
12 2il1_A RAB12; G-protein, GDP, 99.9 5E-24 1.7E-28 169.8 13.4 114 98-211 24-138 (192)
13 3ihw_A Centg3; RAS, centaurin, 99.9 6E-24 2.1E-28 168.7 13.9 110 96-212 16-127 (184)
14 1z08_A RAS-related protein RAB 99.9 9.9E-24 3.4E-28 163.2 14.2 114 98-211 4-118 (170)
15 1z0f_A RAB14, member RAS oncog 99.9 1.4E-23 4.9E-28 163.3 15.0 114 98-211 13-127 (179)
16 2y8e_A RAB-protein 6, GH09086P 99.9 1.3E-23 4.5E-28 163.5 14.7 117 95-211 9-126 (179)
17 2efe_B Small GTP-binding prote 99.9 2.4E-23 8.3E-28 162.7 16.1 115 97-211 9-124 (181)
18 2g6b_A RAS-related protein RAB 99.9 2.7E-23 9.2E-28 162.3 16.3 116 97-212 7-124 (180)
19 1z06_A RAS-related protein RAB 99.9 8.3E-24 2.8E-28 167.5 13.5 114 98-211 18-134 (189)
20 2iwr_A Centaurin gamma 1; ANK 99.9 1.4E-23 4.9E-28 164.1 14.5 109 98-212 5-116 (178)
21 2bme_A RAB4A, RAS-related prot 99.9 2.2E-23 7.6E-28 163.8 15.6 115 98-212 8-123 (186)
22 2bcg_Y Protein YP2, GTP-bindin 99.9 3.3E-23 1.1E-27 166.2 16.8 114 98-211 6-120 (206)
23 3tkl_A RAS-related protein RAB 99.9 3E-23 1E-27 164.4 16.3 115 98-212 14-129 (196)
24 1z0j_A RAB-22, RAS-related pro 99.9 4.1E-23 1.4E-27 159.4 16.5 114 98-211 4-118 (170)
25 2p5s_A RAS and EF-hand domain 99.9 9.3E-24 3.2E-28 168.9 12.7 114 98-211 26-140 (199)
26 1gwn_A RHO-related GTP-binding 99.9 2.3E-23 7.7E-28 168.5 14.9 113 98-212 26-140 (205)
27 3cpj_B GTP-binding protein YPT 99.9 3.4E-23 1.1E-27 168.8 16.0 114 98-211 11-125 (223)
28 3reg_A RHO-like small GTPase; 99.9 4.7E-23 1.6E-27 163.8 16.2 115 96-212 19-135 (194)
29 3t5g_A GTP-binding protein RHE 99.9 6.4E-23 2.2E-27 160.7 16.6 114 98-212 4-119 (181)
30 2o52_A RAS-related protein RAB 99.9 1.2E-23 4.2E-28 168.7 12.7 114 98-211 23-137 (200)
31 3tw8_B RAS-related protein RAB 99.9 6.7E-23 2.3E-27 159.8 16.6 113 98-211 7-120 (181)
32 3kkq_A RAS-related protein M-R 99.9 2.7E-23 9.2E-28 163.2 14.4 116 96-212 14-131 (183)
33 2q3h_A RAS homolog gene family 99.9 4.3E-23 1.5E-27 164.7 15.6 115 96-212 16-132 (201)
34 3dz8_A RAS-related protein RAB 99.9 1E-24 3.5E-29 173.3 6.0 115 98-212 21-136 (191)
35 2hxs_A RAB-26, RAS-related pro 99.9 2E-23 6.7E-28 162.8 13.2 104 98-201 4-109 (178)
36 1m7b_A RND3/RHOE small GTP-bin 99.9 4.3E-23 1.5E-27 163.0 15.2 113 98-212 5-119 (184)
37 2fg5_A RAB-22B, RAS-related pr 99.9 4.5E-23 1.6E-27 164.0 15.4 114 98-211 21-135 (192)
38 1g16_A RAS-related protein SEC 99.9 2.1E-23 7.3E-28 161.0 13.1 112 100-211 3-115 (170)
39 1zbd_A Rabphilin-3A; G protein 99.9 6.7E-23 2.3E-27 163.9 16.3 114 99-212 7-121 (203)
40 3cbq_A GTP-binding protein REM 99.9 1.1E-23 3.8E-28 168.7 11.6 115 98-212 21-138 (195)
41 1wms_A RAB-9, RAB9, RAS-relate 99.9 4E-23 1.4E-27 161.0 14.4 115 97-211 4-123 (177)
42 2atx_A Small GTP binding prote 99.9 6.4E-23 2.2E-27 162.9 15.4 114 97-212 15-130 (194)
43 3oes_A GTPase rhebl1; small GT 99.9 4.4E-23 1.5E-27 165.2 14.5 115 96-211 20-136 (201)
44 2j0v_A RAC-like GTP-binding pr 99.9 6.3E-23 2.2E-27 165.2 15.4 112 98-211 7-120 (212)
45 2fn4_A P23, RAS-related protei 99.9 9.9E-23 3.4E-27 158.8 16.0 114 97-211 6-121 (181)
46 1z2a_A RAS-related protein RAB 99.9 5E-23 1.7E-27 158.7 14.0 112 99-211 4-116 (168)
47 1x3s_A RAS-related protein RAB 99.9 6.3E-23 2.1E-27 162.2 14.7 115 97-211 12-128 (195)
48 3l0i_B RAS-related protein RAB 99.9 5.5E-24 1.9E-28 170.2 8.1 114 98-211 31-145 (199)
49 2nzj_A GTP-binding protein REM 99.9 7.5E-23 2.6E-27 158.9 13.7 113 99-211 3-118 (175)
50 1c1y_A RAS-related protein RAP 99.9 1E-22 3.4E-27 156.8 13.7 112 99-211 2-115 (167)
51 2g3y_A GTP-binding protein GEM 99.9 5.3E-23 1.8E-27 167.9 12.6 115 98-212 35-153 (211)
52 3gj0_A GTP-binding nuclear pro 99.9 3.6E-23 1.2E-27 168.1 11.5 116 95-211 10-126 (221)
53 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.3E-22 8E-27 157.5 15.8 112 98-211 3-116 (186)
54 3cph_A RAS-related protein SEC 99.9 1.4E-22 4.9E-27 162.7 14.8 113 99-211 19-132 (213)
55 3bc1_A RAS-related protein RAB 99.9 1.6E-22 5.5E-27 159.2 14.5 114 98-211 9-134 (195)
56 1ky3_A GTP-binding protein YPT 99.9 7.9E-23 2.7E-27 159.5 12.2 114 98-211 6-125 (182)
57 3q85_A GTP-binding protein REM 99.9 1.4E-22 4.8E-27 156.7 13.4 113 100-212 2-117 (169)
58 2gco_A H9, RHO-related GTP-bin 99.9 3.3E-22 1.1E-26 160.2 16.0 112 98-211 23-136 (201)
59 4gzl_A RAS-related C3 botulinu 99.9 2E-22 6.7E-27 162.3 14.6 113 97-211 27-141 (204)
60 2cjw_A GTP-binding protein GEM 99.9 2.5E-22 8.5E-27 160.5 14.9 113 99-211 5-121 (192)
61 2fv8_A H6, RHO-related GTP-bin 99.9 2.8E-22 9.6E-27 161.4 15.3 112 98-211 23-136 (207)
62 2a9k_A RAS-related protein RAL 99.9 2E-22 6.8E-27 157.9 14.0 115 96-211 14-130 (187)
63 1vg8_A RAS-related protein RAB 99.9 1.8E-22 6.1E-27 161.4 13.9 114 98-211 6-124 (207)
64 2yc2_C IFT27, small RAB-relate 99.9 2.9E-23 9.9E-28 165.7 9.1 115 98-212 18-140 (208)
65 3con_A GTPase NRAS; structural 99.9 4.3E-22 1.5E-26 157.4 15.5 114 97-211 18-133 (190)
66 1kao_A RAP2A; GTP-binding prot 99.9 3.8E-22 1.3E-26 153.1 14.7 112 99-211 2-115 (167)
67 3q72_A GTP-binding protein RAD 99.9 2.2E-22 7.4E-27 155.2 13.1 112 100-212 2-114 (166)
68 2f7s_A C25KG, RAS-related prot 99.9 4E-23 1.4E-27 166.9 9.3 114 98-211 23-148 (217)
69 3clv_A RAB5 protein, putative; 99.9 4.8E-22 1.6E-26 157.2 15.2 111 99-211 6-154 (208)
70 2bov_A RAla, RAS-related prote 99.9 4.7E-22 1.6E-26 158.7 14.8 115 97-212 11-127 (206)
71 3bwd_D RAC-like GTP-binding pr 99.9 9.7E-23 3.3E-27 159.4 10.6 112 98-211 6-119 (182)
72 1u8z_A RAS-related protein RAL 99.9 4.6E-22 1.6E-26 152.7 14.0 113 98-211 2-116 (168)
73 4dsu_A GTPase KRAS, isoform 2B 99.9 1E-21 3.5E-26 154.3 15.7 112 99-211 3-116 (189)
74 2j1l_A RHO-related GTP-binding 99.9 3.9E-22 1.3E-26 161.6 13.5 112 98-211 32-145 (214)
75 1oix_A RAS-related protein RAB 99.9 1.8E-21 6.2E-26 155.2 16.9 115 98-212 27-142 (191)
76 3t1o_A Gliding protein MGLA; G 99.9 1.1E-22 3.8E-27 160.7 8.6 115 96-212 10-143 (198)
77 2atv_A RERG, RAS-like estrogen 99.9 8.7E-22 3E-26 156.9 13.7 112 98-211 26-139 (196)
78 1zd9_A ADP-ribosylation factor 99.9 3E-22 1E-26 158.8 10.5 110 98-211 20-131 (188)
79 1f6b_A SAR1; gtpases, N-termin 99.9 7.8E-22 2.7E-26 158.2 12.8 111 98-212 23-134 (198)
80 2h57_A ADP-ribosylation factor 99.9 1.1E-21 3.7E-26 155.4 13.3 109 99-211 20-133 (190)
81 2zej_A Dardarin, leucine-rich 99.9 1.1E-22 3.9E-27 160.8 7.6 111 100-211 2-119 (184)
82 2ce2_X GTPase HRAS; signaling 99.9 2.9E-21 9.8E-26 147.8 14.6 112 99-211 2-115 (166)
83 2h17_A ADP-ribosylation factor 99.9 8.7E-22 3E-26 155.0 11.9 110 98-211 19-129 (181)
84 2erx_A GTP-binding protein DI- 99.9 1.8E-21 6.2E-26 150.2 13.2 111 100-211 3-116 (172)
85 4bas_A ADP-ribosylation factor 99.9 8E-22 2.7E-26 156.5 11.1 111 97-211 14-134 (199)
86 1m2o_B GTP-binding protein SAR 99.9 2.7E-21 9.3E-26 153.9 14.1 111 98-212 21-132 (190)
87 4djt_A GTP-binding nuclear pro 99.9 6.6E-22 2.3E-26 159.9 10.6 116 97-212 8-125 (218)
88 1r8s_A ADP-ribosylation factor 99.9 1E-21 3.5E-26 151.1 11.2 107 101-211 1-108 (164)
89 2f9l_A RAB11B, member RAS onco 99.9 4.4E-21 1.5E-25 153.5 15.3 114 99-212 4-118 (199)
90 3llu_A RAS-related GTP-binding 99.9 2.1E-21 7.1E-26 155.0 12.0 113 97-212 17-137 (196)
91 1upt_A ARL1, ADP-ribosylation 99.9 3.8E-21 1.3E-25 148.7 13.0 109 99-211 6-115 (171)
92 1zj6_A ADP-ribosylation factor 99.9 3.4E-21 1.2E-25 152.2 12.4 110 99-212 15-125 (187)
93 2gf0_A GTP-binding protein DI- 99.9 2.6E-21 8.9E-26 153.5 11.8 112 99-211 7-121 (199)
94 1fzq_A ADP-ribosylation factor 99.9 1.9E-21 6.6E-26 153.5 10.5 110 99-212 15-125 (181)
95 2b6h_A ADP-ribosylation factor 99.9 4.3E-21 1.5E-25 153.0 12.5 110 98-211 27-137 (192)
96 1ksh_A ARF-like protein 2; sma 99.8 1.1E-20 3.9E-25 148.6 12.2 110 98-211 16-126 (186)
97 2x77_A ADP-ribosylation factor 99.8 8.4E-21 2.9E-25 150.0 11.5 109 99-211 21-130 (189)
98 1moz_A ARL1, ADP-ribosylation 99.8 1E-20 3.5E-25 148.2 10.7 110 98-211 16-126 (183)
99 2wkq_A NPH1-1, RAS-related C3 99.8 6.8E-20 2.3E-24 156.5 15.4 110 100-211 155-266 (332)
100 3c5h_A Glucocorticoid receptor 99.8 2.6E-21 9E-26 161.7 5.1 115 98-212 17-206 (255)
101 3r7w_B Gtpase2, GTP-binding pr 99.8 1.6E-20 5.4E-25 162.5 10.0 104 102-211 1-113 (331)
102 3th5_A RAS-related C3 botulinu 99.7 4.5E-22 1.5E-26 159.5 0.0 112 98-211 28-141 (204)
103 2fh5_B SR-beta, signal recogni 99.8 8.3E-20 2.9E-24 147.1 10.7 112 98-211 5-122 (214)
104 3lvq_E ARF-GAP with SH3 domain 99.8 1.7E-19 5.8E-24 163.7 13.1 112 97-212 319-431 (497)
105 3o47_A ADP-ribosylation factor 99.8 1.3E-19 4.5E-24 157.0 10.9 110 98-211 163-273 (329)
106 3r7w_A Gtpase1, GTP-binding pr 99.8 2.8E-19 9.6E-24 153.4 12.3 109 100-212 3-123 (307)
107 2lkc_A Translation initiation 99.8 2.2E-18 7.4E-23 134.1 11.9 105 98-211 6-114 (178)
108 2wji_A Ferrous iron transport 99.8 5.6E-18 1.9E-22 131.5 13.9 105 99-211 2-115 (165)
109 2gj8_A MNME, tRNA modification 99.8 2.6E-18 9.1E-23 134.6 11.8 109 100-211 4-122 (172)
110 1nrj_B SR-beta, signal recogni 99.7 1.4E-18 4.9E-23 140.2 6.7 105 98-211 10-127 (218)
111 2ged_A SR-beta, signal recogni 99.7 2.8E-18 9.7E-23 135.6 8.2 105 98-211 46-163 (193)
112 2wjg_A FEOB, ferrous iron tran 99.7 1.8E-17 6E-22 130.3 12.7 107 97-211 4-119 (188)
113 3dpu_A RAB family protein; roc 99.7 2.2E-18 7.6E-23 158.0 3.2 114 96-213 37-159 (535)
114 2qu8_A Putative nucleolar GTP- 99.7 1.1E-16 3.7E-21 130.6 10.7 110 99-211 28-149 (228)
115 2dyk_A GTP-binding protein; GT 99.7 1.5E-16 5.2E-21 121.4 10.2 105 101-211 2-115 (161)
116 2cxx_A Probable GTP-binding pr 99.7 1.4E-17 4.7E-22 130.8 3.2 105 101-211 2-129 (190)
117 1svi_A GTP-binding protein YSX 99.7 7.8E-17 2.7E-21 127.3 6.5 104 99-211 22-141 (195)
118 3a1s_A Iron(II) transport prot 99.6 3.6E-15 1.2E-19 124.8 13.9 107 98-212 3-118 (258)
119 3iby_A Ferrous iron transport 99.6 1.6E-15 5.3E-20 127.0 10.6 104 101-212 2-118 (256)
120 3iev_A GTP-binding protein ERA 99.6 2.5E-15 8.6E-20 128.8 10.4 110 98-211 8-129 (308)
121 3def_A T7I23.11 protein; chlor 99.6 1.5E-15 5.1E-20 127.0 8.6 110 99-211 35-158 (262)
122 3i8s_A Ferrous iron transport 99.6 4.9E-15 1.7E-19 125.0 11.4 106 99-212 2-120 (274)
123 3pqc_A Probable GTP-binding pr 99.6 2.3E-15 7.9E-20 118.3 8.7 105 98-211 21-140 (195)
124 3b1v_A Ferrous iron uptake tra 99.6 3.2E-15 1.1E-19 126.2 9.9 104 100-212 3-115 (272)
125 3k53_A Ferrous iron transport 99.6 1.8E-14 6.1E-19 121.0 12.6 107 99-212 2-117 (271)
126 1wf3_A GTP-binding protein; GT 99.6 1.8E-14 6E-19 123.3 11.5 108 98-211 5-124 (301)
127 1h65_A Chloroplast outer envel 99.6 7.5E-15 2.6E-19 123.2 8.9 112 99-211 38-161 (270)
128 3lxw_A GTPase IMAP family memb 99.6 1.5E-14 5.2E-19 120.1 10.4 110 99-212 20-147 (247)
129 3gee_A MNME, tRNA modification 99.6 8.7E-15 3E-19 132.6 9.4 108 100-211 233-350 (476)
130 2xtp_A GTPase IMAP family memb 99.6 4.8E-14 1.7E-18 117.1 13.1 112 98-211 20-146 (260)
131 3lxx_A GTPase IMAP family memb 99.5 8.2E-15 2.8E-19 120.5 7.7 110 98-211 27-152 (239)
132 2xtz_A Guanine nucleotide-bind 99.5 8.2E-15 2.8E-19 128.2 7.3 66 146-211 181-257 (354)
133 4fid_A G protein alpha subunit 99.5 1.7E-14 5.9E-19 125.3 9.2 66 146-211 159-235 (340)
134 2hjg_A GTP-binding protein ENG 99.5 6.9E-15 2.4E-19 131.6 6.6 107 99-211 174-293 (436)
135 1mky_A Probable GTP-binding pr 99.5 2.9E-14 9.8E-19 127.7 10.0 103 101-211 2-117 (439)
136 4dhe_A Probable GTP-binding pr 99.5 6E-15 2E-19 119.1 4.6 109 99-211 28-151 (223)
137 3qq5_A Small GTP-binding prote 99.5 2.8E-14 9.5E-19 127.5 7.0 108 97-211 31-147 (423)
138 2hjg_A GTP-binding protein ENG 99.5 1.7E-14 5.8E-19 129.1 5.0 108 100-211 3-118 (436)
139 3ohm_A Guanine nucleotide-bind 99.5 3E-13 1E-17 117.1 12.5 70 140-211 161-241 (327)
140 1lnz_A SPO0B-associated GTP-bi 99.5 5.9E-14 2E-18 122.2 7.2 108 101-211 159-281 (342)
141 2e87_A Hypothetical protein PH 99.5 5.4E-13 1.9E-17 116.3 13.2 110 99-211 166-287 (357)
142 1cip_A Protein (guanine nucleo 99.5 1.8E-13 6.1E-18 119.6 10.1 71 140-212 187-268 (353)
143 4dcu_A GTP-binding protein ENG 99.4 1.9E-14 6.5E-19 129.5 3.0 111 97-211 20-138 (456)
144 2qtf_A Protein HFLX, GTP-bindi 99.4 4.5E-13 1.5E-17 117.5 10.9 109 100-211 178-299 (364)
145 4dcu_A GTP-binding protein ENG 99.4 2E-13 6.9E-18 122.8 8.5 108 98-211 193-313 (456)
146 3t5d_A Septin-7; GTP-binding p 99.4 4.1E-13 1.4E-17 112.9 9.6 109 99-211 7-151 (274)
147 1xzp_A Probable tRNA modificat 99.4 1.5E-13 5E-18 124.7 7.1 105 100-212 243-359 (482)
148 2qag_A Septin-2, protein NEDD5 99.4 1.5E-13 5E-18 120.4 6.7 109 99-211 36-181 (361)
149 3geh_A MNME, tRNA modification 99.4 2E-13 7E-18 123.2 7.2 103 100-210 224-336 (462)
150 3sjy_A Translation initiation 99.4 2.9E-12 9.9E-17 113.5 13.4 114 98-213 6-139 (403)
151 3j2k_7 ERF3, eukaryotic polype 99.4 9.8E-13 3.3E-17 118.0 9.8 86 98-185 15-132 (439)
152 1r5b_A Eukaryotic peptide chai 99.4 2.5E-13 8.4E-18 122.7 5.9 112 98-213 41-191 (467)
153 1jny_A EF-1-alpha, elongation 99.4 1.7E-13 5.9E-18 122.6 4.4 114 99-213 5-154 (435)
154 3p26_A Elongation factor 1 alp 99.4 8.6E-13 3E-17 119.5 8.3 92 98-189 31-152 (483)
155 2c78_A Elongation factor TU-A; 99.4 7.8E-13 2.7E-17 117.2 7.7 112 98-213 9-138 (405)
156 3izy_P Translation initiation 99.4 8.4E-14 2.9E-18 127.7 1.0 107 100-211 4-111 (537)
157 1g7s_A Translation initiation 99.3 1.4E-12 4.8E-17 121.0 7.3 106 99-211 4-129 (594)
158 1mky_A Probable GTP-binding pr 99.3 5.8E-12 2E-16 112.7 11.0 107 99-211 179-299 (439)
159 1wb1_A Translation elongation 99.3 2.8E-12 9.4E-17 116.3 8.9 93 97-191 16-119 (482)
160 1n0u_A EF-2, elongation factor 99.3 6.8E-12 2.3E-16 120.7 10.8 110 99-212 18-159 (842)
161 1f60_A Elongation factor EEF1A 99.3 4.8E-13 1.6E-17 120.6 2.3 83 98-184 5-121 (458)
162 1zun_B Sulfate adenylate trans 99.3 1.2E-11 4.1E-16 110.6 10.7 113 98-213 22-167 (434)
163 3cb4_D GTP-binding protein LEP 99.3 2.8E-12 9.4E-17 119.1 6.6 107 100-210 4-129 (599)
164 3tr5_A RF-3, peptide chain rel 99.3 1.7E-12 5.8E-17 119.0 5.0 108 100-211 13-141 (528)
165 1d2e_A Elongation factor TU (E 99.3 5.5E-12 1.9E-16 111.5 8.1 110 100-213 3-129 (397)
166 3izq_1 HBS1P, elongation facto 99.3 1.6E-12 5.5E-17 121.0 4.5 88 97-184 164-281 (611)
167 2aka_B Dynamin-1; fusion prote 99.3 5.8E-12 2E-16 106.1 7.5 111 98-211 24-199 (299)
168 1azs_C GS-alpha; complex (lyas 99.3 1.3E-11 4.3E-16 109.5 9.9 77 131-211 204-291 (402)
169 1s0u_A EIF-2-gamma, translatio 99.3 2.6E-11 8.9E-16 107.5 11.8 95 99-193 7-130 (408)
170 1ega_A Protein (GTP-binding pr 99.3 8.7E-12 3E-16 106.4 8.4 106 98-211 6-123 (301)
171 2ywe_A GTP-binding protein LEP 99.3 6.7E-12 2.3E-16 116.5 8.0 109 100-212 6-134 (600)
172 1pui_A ENGB, probable GTP-bind 99.3 4E-12 1.4E-16 101.4 5.6 103 99-210 25-143 (210)
173 2elf_A Protein translation elo 99.3 7.2E-12 2.5E-16 110.0 7.4 100 102-213 23-123 (370)
174 1jal_A YCHF protein; nucleotid 99.2 1.3E-11 4.5E-16 108.1 8.5 96 100-197 2-132 (363)
175 2h5e_A Peptide chain release f 99.2 1.3E-11 4.4E-16 113.2 8.6 110 99-212 12-143 (529)
176 1kk1_A EIF2gamma; initiation o 99.2 7.5E-11 2.5E-15 104.6 11.9 97 97-193 7-132 (410)
177 1zo1_I IF2, translation initia 99.2 6.3E-12 2.2E-16 114.4 3.7 90 99-190 3-96 (501)
178 1wxq_A GTP-binding protein; st 99.2 8.3E-11 2.8E-15 104.2 10.4 100 101-200 1-141 (397)
179 3t34_A Dynamin-related protein 99.2 4.7E-11 1.6E-15 104.0 8.4 108 101-210 35-209 (360)
180 1dar_A EF-G, elongation factor 99.2 5.9E-11 2E-15 111.9 9.3 107 98-212 10-138 (691)
181 3avx_A Elongation factor TS, e 99.2 1.2E-11 4.1E-16 121.2 4.6 114 96-213 292-422 (1289)
182 2ohf_A Protein OLA1, GTP-bindi 99.2 2.5E-11 8.7E-16 107.3 6.3 91 100-190 22-135 (396)
183 2j69_A Bacterial dynamin-like 99.2 4.8E-11 1.6E-15 112.6 8.1 109 100-212 69-239 (695)
184 2qag_C Septin-7; cell cycle, c 99.2 8.5E-11 2.9E-15 104.8 9.2 111 97-211 28-174 (418)
185 1u0l_A Probable GTPase ENGC; p 99.2 1.2E-11 4.2E-16 105.5 3.4 88 115-211 32-122 (301)
186 2qpt_A EH domain-containing pr 99.1 4.2E-11 1.4E-15 110.2 6.4 107 100-212 65-227 (550)
187 2xex_A Elongation factor G; GT 99.1 9.6E-11 3.3E-15 110.5 8.8 108 99-212 9-136 (693)
188 2rdo_7 EF-G, elongation factor 99.1 1.6E-10 5.5E-15 109.2 10.0 110 99-212 9-143 (704)
189 1zcb_A G alpha I/13; GTP-bindi 99.1 3.2E-10 1.1E-14 99.3 10.9 97 111-211 158-275 (362)
190 2qnr_A Septin-2, protein NEDD5 99.1 7.4E-11 2.5E-15 100.7 5.5 110 98-210 16-161 (301)
191 2dy1_A Elongation factor G; tr 99.1 1.7E-10 5.7E-15 108.4 8.3 110 99-212 8-135 (665)
192 1jwy_B Dynamin A GTPase domain 99.1 1.4E-10 4.8E-15 98.5 6.5 28 98-125 22-49 (315)
193 3mca_A HBS1, elongation factor 99.1 3.7E-11 1.3E-15 111.5 2.5 85 98-184 175-291 (592)
194 1udx_A The GTP-binding protein 99.0 1.6E-09 5.3E-14 96.6 8.7 108 101-210 158-275 (416)
195 2dby_A GTP-binding protein; GD 99.0 1.9E-09 6.4E-14 94.6 8.9 81 101-183 2-111 (368)
196 2x2e_A Dynamin-1; nitration, h 98.9 7.5E-10 2.5E-14 96.2 4.9 28 99-126 30-57 (353)
197 2hf9_A Probable hydrogenase ni 98.7 2.2E-11 7.4E-16 98.4 -11.6 38 100-137 38-76 (226)
198 4a9a_A Ribosome-interacting GT 98.6 1.9E-07 6.4E-12 82.1 9.9 109 100-212 72-191 (376)
199 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 9.8E-08 3.3E-12 84.3 7.7 84 100-183 20-127 (392)
200 2wsm_A Hydrogenase expression/ 98.4 3.6E-07 1.2E-11 73.1 5.5 82 100-185 30-143 (221)
201 3vqt_A RF-3, peptide chain rel 98.4 6.4E-07 2.2E-11 82.3 7.6 110 100-213 31-162 (548)
202 3cnl_A YLQF, putative uncharac 98.3 3.2E-07 1.1E-11 76.7 3.1 58 101-161 100-157 (262)
203 3p32_A Probable GTPase RV1496/ 98.2 3.2E-07 1.1E-11 79.7 1.9 41 147-190 171-211 (355)
204 1bif_A 6-phosphofructo-2-kinas 98.2 3.8E-08 1.3E-12 88.6 -4.3 102 99-201 38-149 (469)
205 4fn5_A EF-G 1, elongation fact 98.2 5.2E-06 1.8E-10 78.4 10.0 111 100-213 13-147 (709)
206 2www_A Methylmalonic aciduria 98.1 5.9E-07 2E-11 78.0 0.4 38 148-188 167-204 (349)
207 1puj_A YLQF, conserved hypothe 98.0 3.5E-06 1.2E-10 71.0 4.8 59 99-160 119-177 (282)
208 3j25_A Tetracycline resistance 98.0 1.3E-06 4.5E-11 81.6 1.8 110 101-213 3-129 (638)
209 1yrb_A ATP(GTP)binding protein 97.9 9.8E-06 3.3E-10 66.4 5.6 24 98-121 12-35 (262)
210 3zvr_A Dynamin-1; hydrolase, D 97.9 3.4E-05 1.2E-09 73.3 9.9 29 97-125 48-76 (772)
211 2p67_A LAO/AO transport system 97.9 2.2E-06 7.5E-11 74.0 0.7 38 147-187 148-185 (341)
212 2yv5_A YJEQ protein; hydrolase 97.8 3.4E-05 1.2E-09 65.5 7.3 53 157-212 65-119 (302)
213 2qm8_A GTPase/ATPase; G protei 97.6 6.3E-05 2.2E-09 64.8 5.2 22 100-121 55-76 (337)
214 3ec1_A YQEH GTPase; atnos1, at 97.4 0.00022 7.6E-09 62.1 6.6 76 101-181 163-255 (369)
215 3l82_B F-box only protein 4; T 97.4 5.9E-05 2E-09 61.2 2.6 57 154-211 108-169 (227)
216 2qag_B Septin-6, protein NEDD5 97.4 0.00092 3.2E-08 59.4 10.3 61 100-160 42-107 (427)
217 3h2y_A GTPase family protein; 97.2 0.0005 1.7E-08 59.9 6.2 57 101-160 161-223 (368)
218 1f5n_A Interferon-induced guan 97.1 0.00041 1.4E-08 64.2 5.3 61 98-160 36-103 (592)
219 2j37_W Signal recognition part 97.1 0.00048 1.6E-08 62.6 5.1 87 100-186 101-228 (504)
220 3sop_A Neuronal-specific septi 96.9 0.00047 1.6E-08 57.5 3.4 25 100-124 2-26 (270)
221 3l2o_B F-box only protein 4; s 96.9 0.00043 1.5E-08 58.7 3.0 56 155-211 194-254 (312)
222 1kgd_A CASK, peripheral plasma 96.3 0.002 6.9E-08 49.9 3.0 22 101-122 6-27 (180)
223 1ye8_A Protein THEP1, hypothet 96.2 0.0028 9.4E-08 49.4 3.2 22 102-123 2-23 (178)
224 1lvg_A Guanylate kinase, GMP k 96.2 0.0026 8.8E-08 50.2 3.0 22 101-122 5-26 (198)
225 1ex7_A Guanylate kinase; subst 96.1 0.0031 1.1E-07 49.7 3.2 21 103-123 4-24 (186)
226 3ney_A 55 kDa erythrocyte memb 96.1 0.0035 1.2E-07 49.9 3.4 24 99-122 18-41 (197)
227 3a00_A Guanylate kinase, GMP k 95.9 0.0039 1.3E-07 48.4 2.9 20 103-122 4-23 (186)
228 4gp7_A Metallophosphoesterase; 95.9 0.004 1.4E-07 47.8 2.7 19 102-120 11-29 (171)
229 1s96_A Guanylate kinase, GMP k 95.8 0.0045 1.6E-07 49.9 3.0 23 101-123 17-39 (219)
230 3tr0_A Guanylate kinase, GMP k 95.8 0.0047 1.6E-07 48.1 3.0 22 102-123 9-30 (205)
231 1tq4_A IIGP1, interferon-induc 95.8 0.0054 1.9E-07 54.3 3.7 22 102-123 71-92 (413)
232 3tau_A Guanylate kinase, GMP k 95.8 0.0051 1.7E-07 48.7 3.0 22 102-123 10-31 (208)
233 1zp6_A Hypothetical protein AT 95.8 0.0052 1.8E-07 47.4 3.0 23 101-123 10-32 (191)
234 1znw_A Guanylate kinase, GMP k 95.7 0.0057 1.9E-07 48.3 3.0 22 102-123 22-43 (207)
235 1z6g_A Guanylate kinase; struc 95.7 0.0056 1.9E-07 49.0 3.0 23 101-123 24-46 (218)
236 3q5d_A Atlastin-1; G protein, 95.7 0.013 4.5E-07 52.3 5.6 65 97-161 64-153 (447)
237 2qor_A Guanylate kinase; phosp 95.6 0.0066 2.3E-07 47.7 3.0 22 101-122 13-34 (204)
238 3dm5_A SRP54, signal recogniti 95.5 0.013 4.3E-07 52.4 4.9 22 100-121 100-121 (443)
239 3kb2_A SPBC2 prophage-derived 95.5 0.0079 2.7E-07 45.3 2.9 21 102-122 3-23 (173)
240 1htw_A HI0065; nucleotide-bind 95.4 0.0089 3E-07 45.7 3.0 23 102-124 35-57 (158)
241 3c8u_A Fructokinase; YP_612366 95.4 0.0084 2.9E-07 47.3 2.8 23 100-122 22-44 (208)
242 3lw7_A Adenylate kinase relate 95.3 0.0096 3.3E-07 44.6 3.0 19 102-120 3-21 (179)
243 2j41_A Guanylate kinase; GMP, 95.3 0.0091 3.1E-07 46.4 2.9 23 101-123 7-29 (207)
244 1jbk_A CLPB protein; beta barr 95.3 0.0098 3.3E-07 44.9 3.0 23 101-123 44-66 (195)
245 1ly1_A Polynucleotide kinase; 95.3 0.01 3.6E-07 44.9 3.0 22 101-122 3-24 (181)
246 2bdt_A BH3686; alpha-beta prot 95.2 0.01 3.6E-07 45.7 3.0 21 102-122 4-24 (189)
247 1kht_A Adenylate kinase; phosp 95.2 0.012 4E-07 45.1 3.2 22 101-122 4-25 (192)
248 1kag_A SKI, shikimate kinase I 95.2 0.011 3.8E-07 44.7 3.0 22 101-122 5-26 (173)
249 3ec2_A DNA replication protein 95.2 0.0092 3.2E-07 45.7 2.5 23 101-123 39-61 (180)
250 2cdn_A Adenylate kinase; phosp 95.2 0.014 4.8E-07 45.5 3.6 24 99-122 19-42 (201)
251 2i3b_A HCR-ntpase, human cance 95.1 0.012 4E-07 46.3 3.0 21 102-122 3-23 (189)
252 1qhx_A CPT, protein (chloramph 95.1 0.013 4.3E-07 44.6 3.0 22 101-122 4-25 (178)
253 2ehv_A Hypothetical protein PH 95.1 0.013 4.4E-07 46.9 3.2 20 102-121 32-51 (251)
254 3vaa_A Shikimate kinase, SK; s 95.1 0.013 4.5E-07 45.8 3.2 22 101-122 26-47 (199)
255 4eun_A Thermoresistant glucoki 95.1 0.013 4.3E-07 45.9 3.0 23 100-122 29-51 (200)
256 3t61_A Gluconokinase; PSI-biol 95.0 0.013 4.3E-07 45.8 2.9 22 101-122 19-40 (202)
257 3fb4_A Adenylate kinase; psych 95.0 0.014 4.6E-07 46.0 3.2 21 102-122 2-22 (216)
258 3tif_A Uncharacterized ABC tra 95.0 0.013 4.3E-07 47.7 3.0 22 102-123 33-54 (235)
259 2bbw_A Adenylate kinase 4, AK4 95.0 0.014 4.9E-07 47.1 3.3 21 101-121 28-48 (246)
260 2rcn_A Probable GTPase ENGC; Y 95.0 0.013 4.5E-07 50.8 3.2 24 102-125 217-240 (358)
261 2jaq_A Deoxyguanosine kinase; 95.0 0.014 4.9E-07 45.1 3.2 21 102-122 2-22 (205)
262 1knq_A Gluconate kinase; ALFA/ 95.0 0.018 6E-07 43.8 3.6 22 101-122 9-30 (175)
263 3dl0_A Adenylate kinase; phosp 95.0 0.014 4.9E-07 46.0 3.2 21 102-122 2-22 (216)
264 1nks_A Adenylate kinase; therm 95.0 0.013 4.6E-07 44.7 2.9 21 102-122 3-23 (194)
265 1np6_A Molybdopterin-guanine d 95.0 0.014 4.7E-07 45.4 3.0 23 101-123 7-29 (174)
266 4a74_A DNA repair and recombin 94.9 0.013 4.4E-07 46.2 2.7 22 101-122 26-47 (231)
267 2pcj_A ABC transporter, lipopr 94.8 0.015 5E-07 46.9 2.8 22 102-123 32-53 (224)
268 1tev_A UMP-CMP kinase; ploop, 94.8 0.019 6.5E-07 43.9 3.4 23 100-122 3-25 (196)
269 3trf_A Shikimate kinase, SK; a 94.8 0.018 6.2E-07 44.1 3.1 22 101-122 6-27 (185)
270 2onk_A Molybdate/tungstate ABC 94.8 0.018 6E-07 47.0 3.2 22 102-123 26-47 (240)
271 2plr_A DTMP kinase, probable t 94.8 0.02 7E-07 44.5 3.5 23 100-122 4-26 (213)
272 3asz_A Uridine kinase; cytidin 94.7 0.017 5.7E-07 45.3 2.9 23 100-122 6-28 (211)
273 1b0u_A Histidine permease; ABC 94.7 0.017 5.8E-07 47.7 3.1 22 102-123 34-55 (262)
274 3uie_A Adenylyl-sulfate kinase 94.7 0.017 5.9E-07 45.1 3.0 23 100-122 25-47 (200)
275 3lnc_A Guanylate kinase, GMP k 94.7 0.011 3.9E-07 47.2 1.8 20 102-121 29-48 (231)
276 2eyu_A Twitching motility prot 94.7 0.018 6E-07 47.6 3.0 22 101-122 26-47 (261)
277 4ido_A Atlastin-1; GTPase, GTP 94.7 0.054 1.9E-06 48.4 6.3 61 100-160 67-152 (457)
278 2p65_A Hypothetical protein PF 94.7 0.014 4.8E-07 44.0 2.3 23 101-123 44-66 (187)
279 2cbz_A Multidrug resistance-as 94.7 0.019 6.5E-07 46.6 3.2 22 102-123 33-54 (237)
280 2if2_A Dephospho-COA kinase; a 94.6 0.018 6.3E-07 44.8 3.0 22 101-122 2-23 (204)
281 2yv5_A YJEQ protein; hydrolase 94.6 0.018 6.3E-07 48.4 3.1 21 101-121 166-186 (302)
282 2ff7_A Alpha-hemolysin translo 94.6 0.019 6.7E-07 46.9 3.2 22 102-123 37-58 (247)
283 1mv5_A LMRA, multidrug resista 94.6 0.02 6.9E-07 46.6 3.2 22 102-123 30-51 (243)
284 1u0l_A Probable GTPase ENGC; p 94.6 0.017 5.8E-07 48.5 2.9 24 102-125 171-194 (301)
285 2rhm_A Putative kinase; P-loop 94.6 0.018 6E-07 44.2 2.7 22 101-122 6-27 (193)
286 1sgw_A Putative ABC transporte 94.6 0.019 6.6E-07 46.0 3.1 22 102-123 37-58 (214)
287 3cm0_A Adenylate kinase; ATP-b 94.6 0.026 8.8E-07 43.2 3.6 23 100-122 4-26 (186)
288 3gfo_A Cobalt import ATP-bindi 94.6 0.019 6.5E-07 47.9 3.1 22 102-123 36-57 (275)
289 1g6h_A High-affinity branched- 94.5 0.02 6.7E-07 47.1 3.0 22 102-123 35-56 (257)
290 1cke_A CK, MSSA, protein (cyti 94.5 0.022 7.6E-07 45.0 3.2 22 101-122 6-27 (227)
291 2w0m_A SSO2452; RECA, SSPF, un 94.5 0.022 7.7E-07 44.7 3.1 21 102-122 25-45 (235)
292 2olj_A Amino acid ABC transpor 94.5 0.021 7.2E-07 47.3 3.1 22 102-123 52-73 (263)
293 2pze_A Cystic fibrosis transme 94.5 0.023 7.9E-07 45.9 3.2 22 102-123 36-57 (229)
294 4g1u_C Hemin import ATP-bindin 94.5 0.021 7.2E-07 47.3 3.0 22 102-123 39-60 (266)
295 2d2e_A SUFC protein; ABC-ATPas 94.4 0.023 7.8E-07 46.5 3.2 22 102-123 31-52 (250)
296 1ji0_A ABC transporter; ATP bi 94.4 0.022 7.4E-07 46.4 3.0 22 102-123 34-55 (240)
297 2qi9_C Vitamin B12 import ATP- 94.4 0.022 7.6E-07 46.7 3.1 22 102-123 28-49 (249)
298 2zu0_C Probable ATP-dependent 94.4 0.023 8E-07 47.0 3.2 22 102-123 48-69 (267)
299 3bos_A Putative DNA replicatio 94.4 0.022 7.5E-07 44.9 3.0 23 100-122 52-74 (242)
300 1zcb_A G alpha I/13; GTP-bindi 94.4 0.024 8.3E-07 49.1 3.4 24 98-121 31-54 (362)
301 1y63_A LMAJ004144AAA protein; 94.4 0.028 9.5E-07 43.3 3.5 24 100-123 10-33 (184)
302 3iij_A Coilin-interacting nucl 94.4 0.03 1E-06 42.7 3.6 22 100-121 11-32 (180)
303 2ixe_A Antigen peptide transpo 94.4 0.022 7.6E-07 47.2 3.0 22 102-123 47-68 (271)
304 2ghi_A Transport protein; mult 94.4 0.024 8.3E-07 46.7 3.2 22 102-123 48-69 (260)
305 1e4v_A Adenylate kinase; trans 94.4 0.023 7.8E-07 44.8 2.9 21 102-122 2-22 (214)
306 1lw7_A Transcriptional regulat 94.3 0.019 6.5E-07 49.4 2.6 23 100-122 170-192 (365)
307 1ixz_A ATP-dependent metallopr 94.3 0.024 8.1E-07 45.9 3.0 21 103-123 52-72 (254)
308 1ukz_A Uridylate kinase; trans 94.3 0.037 1.3E-06 43.0 4.1 21 101-121 16-36 (203)
309 3tlx_A Adenylate kinase 2; str 94.3 0.027 9.3E-07 45.7 3.4 23 100-122 29-51 (243)
310 1vpl_A ABC transporter, ATP-bi 94.3 0.024 8.2E-07 46.7 3.1 22 102-123 43-64 (256)
311 3sr0_A Adenylate kinase; phosp 94.3 0.026 8.8E-07 45.0 3.2 21 102-122 2-22 (206)
312 2ihy_A ABC transporter, ATP-bi 94.3 0.025 8.7E-07 47.1 3.2 22 102-123 49-70 (279)
313 1njg_A DNA polymerase III subu 94.3 0.024 8.2E-07 44.2 2.9 21 102-122 47-67 (250)
314 2chg_A Replication factor C sm 94.3 0.025 8.4E-07 43.7 3.0 20 103-122 41-60 (226)
315 2v9p_A Replication protein E1; 94.3 0.025 8.4E-07 48.0 3.1 22 101-122 127-148 (305)
316 1via_A Shikimate kinase; struc 94.3 0.026 9E-07 42.9 3.0 21 102-122 6-26 (175)
317 1jjv_A Dephospho-COA kinase; P 94.3 0.031 1.1E-06 43.6 3.5 22 101-122 3-24 (206)
318 1aky_A Adenylate kinase; ATP:A 94.2 0.028 9.5E-07 44.5 3.2 22 101-122 5-26 (220)
319 1t9h_A YLOQ, probable GTPase E 94.2 0.0079 2.7E-07 51.1 -0.1 24 101-124 174-197 (307)
320 3b85_A Phosphate starvation-in 94.2 0.019 6.5E-07 45.8 2.2 22 102-123 24-45 (208)
321 2f1r_A Molybdopterin-guanine d 94.2 0.012 4.1E-07 45.6 0.9 21 102-122 4-24 (171)
322 2nq2_C Hypothetical ABC transp 94.2 0.026 9E-07 46.3 3.0 22 102-123 33-54 (253)
323 2v54_A DTMP kinase, thymidylat 94.2 0.031 1.1E-06 43.2 3.3 24 100-123 4-27 (204)
324 2yz2_A Putative ABC transporte 94.1 0.027 9.1E-07 46.6 3.0 22 102-123 35-56 (266)
325 2cvh_A DNA repair and recombin 94.1 0.03 1E-06 43.8 3.1 21 102-122 22-42 (220)
326 2kjq_A DNAA-related protein; s 94.1 0.019 6.7E-07 43.1 1.9 22 101-122 37-58 (149)
327 2pjz_A Hypothetical protein ST 94.1 0.031 1E-06 46.3 3.2 23 102-124 32-54 (263)
328 3aez_A Pantothenate kinase; tr 94.1 0.028 9.5E-07 47.7 3.0 23 100-122 90-112 (312)
329 1rj9_A FTSY, signal recognitio 94.1 0.028 9.4E-07 47.6 3.0 21 101-121 103-123 (304)
330 2wwf_A Thymidilate kinase, put 94.0 0.042 1.4E-06 42.8 3.8 23 100-122 10-32 (212)
331 1zd8_A GTP:AMP phosphotransfer 94.0 0.031 1.1E-06 44.5 3.1 22 101-122 8-29 (227)
332 1n0w_A DNA repair protein RAD5 94.0 0.032 1.1E-06 44.3 3.2 22 102-123 26-47 (243)
333 1gvn_B Zeta; postsegregational 94.0 0.035 1.2E-06 46.3 3.5 22 101-122 34-55 (287)
334 1zak_A Adenylate kinase; ATP:A 94.0 0.028 9.6E-07 44.5 2.7 22 101-122 6-27 (222)
335 2yvu_A Probable adenylyl-sulfa 94.0 0.044 1.5E-06 42.1 3.8 23 100-122 13-35 (186)
336 1xjc_A MOBB protein homolog; s 94.0 0.035 1.2E-06 43.0 3.2 22 101-122 5-26 (169)
337 2pt5_A Shikimate kinase, SK; a 94.0 0.036 1.2E-06 41.6 3.2 21 102-122 2-22 (168)
338 2w58_A DNAI, primosome compone 93.9 0.032 1.1E-06 43.3 3.0 22 101-122 55-76 (202)
339 2z0h_A DTMP kinase, thymidylat 93.9 0.033 1.1E-06 42.8 3.0 21 102-122 2-22 (197)
340 2qt1_A Nicotinamide riboside k 93.9 0.045 1.5E-06 42.8 3.8 24 100-123 21-44 (207)
341 1gtv_A TMK, thymidylate kinase 93.9 0.012 4.2E-07 46.0 0.4 21 102-122 2-22 (214)
342 2ze6_A Isopentenyl transferase 93.9 0.032 1.1E-06 45.5 3.0 21 102-122 3-23 (253)
343 2x8a_A Nuclear valosin-contain 93.9 0.032 1.1E-06 46.3 3.0 20 103-122 47-66 (274)
344 2xb4_A Adenylate kinase; ATP-b 93.9 0.036 1.2E-06 44.2 3.2 21 102-122 2-22 (223)
345 1ak2_A Adenylate kinase isoenz 93.8 0.039 1.3E-06 44.2 3.3 22 101-122 17-38 (233)
346 3b9q_A Chloroplast SRP recepto 93.8 0.033 1.1E-06 47.0 3.0 22 101-122 101-122 (302)
347 3fvq_A Fe(3+) IONS import ATP- 93.8 0.032 1.1E-06 48.4 2.9 23 102-124 32-54 (359)
348 2vp4_A Deoxynucleoside kinase; 93.8 0.037 1.2E-06 44.3 3.1 24 100-123 20-43 (230)
349 1iy2_A ATP-dependent metallopr 93.8 0.035 1.2E-06 45.6 3.0 21 103-123 76-96 (278)
350 1qf9_A UMP/CMP kinase, protein 93.7 0.049 1.7E-06 41.5 3.6 22 101-122 7-28 (194)
351 3e70_C DPA, signal recognition 93.7 0.035 1.2E-06 47.5 3.0 23 100-122 129-151 (328)
352 2pbr_A DTMP kinase, thymidylat 93.7 0.04 1.4E-06 42.1 3.1 21 102-122 2-22 (195)
353 1cr0_A DNA primase/helicase; R 93.7 0.032 1.1E-06 46.2 2.7 21 102-122 37-57 (296)
354 1lv7_A FTSH; alpha/beta domain 93.7 0.037 1.3E-06 44.8 3.0 21 102-122 47-67 (257)
355 1z47_A CYSA, putative ABC-tran 93.7 0.037 1.3E-06 47.9 3.2 23 102-124 43-65 (355)
356 2bbs_A Cystic fibrosis transme 93.7 0.036 1.2E-06 46.5 2.9 22 102-123 66-87 (290)
357 2c95_A Adenylate kinase 1; tra 93.7 0.036 1.2E-06 42.5 2.8 22 101-122 10-31 (196)
358 2it1_A 362AA long hypothetical 93.6 0.039 1.3E-06 47.9 3.2 22 102-123 31-52 (362)
359 1uj2_A Uridine-cytidine kinase 93.6 0.043 1.5E-06 44.5 3.3 23 100-122 22-44 (252)
360 1nn5_A Similar to deoxythymidy 93.6 0.04 1.4E-06 42.9 3.0 23 100-122 9-31 (215)
361 2bwj_A Adenylate kinase 5; pho 93.6 0.04 1.4E-06 42.4 3.0 22 101-122 13-34 (199)
362 2yyz_A Sugar ABC transporter, 93.6 0.039 1.3E-06 47.8 3.2 22 102-123 31-52 (359)
363 1e6c_A Shikimate kinase; phosp 93.6 0.043 1.5E-06 41.3 3.0 21 102-122 4-24 (173)
364 2jeo_A Uridine-cytidine kinase 93.6 0.039 1.3E-06 44.5 3.0 23 100-122 25-47 (245)
365 1odf_A YGR205W, hypothetical 3 93.6 0.053 1.8E-06 45.5 3.8 22 100-121 31-52 (290)
366 1in4_A RUVB, holliday junction 93.6 0.038 1.3E-06 46.9 3.0 21 102-122 53-73 (334)
367 1rz3_A Hypothetical protein rb 93.5 0.039 1.3E-06 43.2 2.8 23 100-122 22-44 (201)
368 3rlf_A Maltose/maltodextrin im 93.5 0.041 1.4E-06 48.1 3.2 23 102-124 31-53 (381)
369 1g29_1 MALK, maltose transport 93.5 0.042 1.4E-06 47.8 3.2 22 102-123 31-52 (372)
370 3jvv_A Twitching mobility prot 93.5 0.039 1.3E-06 47.7 2.9 21 102-122 125-145 (356)
371 3be4_A Adenylate kinase; malar 93.5 0.042 1.4E-06 43.5 3.0 22 101-122 6-27 (217)
372 1v43_A Sugar-binding transport 93.5 0.043 1.5E-06 47.8 3.2 22 102-123 39-60 (372)
373 3nh6_A ATP-binding cassette SU 93.5 0.028 9.4E-07 47.7 1.9 22 102-123 82-103 (306)
374 1uf9_A TT1252 protein; P-loop, 93.4 0.05 1.7E-06 41.9 3.2 24 100-123 8-31 (203)
375 2qen_A Walker-type ATPase; unk 93.4 0.044 1.5E-06 45.7 3.0 22 102-123 33-54 (350)
376 3b5x_A Lipid A export ATP-bind 93.3 0.081 2.8E-06 48.4 5.0 22 102-123 371-392 (582)
377 2dr3_A UPF0273 protein PH0284; 93.3 0.045 1.5E-06 43.5 2.9 21 102-122 25-45 (247)
378 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.046 1.6E-06 44.7 3.0 22 101-122 5-26 (260)
379 3n70_A Transport activator; si 93.3 0.089 3E-06 38.9 4.4 23 101-123 25-47 (145)
380 3co5_A Putative two-component 93.3 0.068 2.3E-06 39.5 3.7 22 101-122 28-49 (143)
381 3h4m_A Proteasome-activating n 93.3 0.044 1.5E-06 44.8 2.9 21 102-122 53-73 (285)
382 2qz4_A Paraplegin; AAA+, SPG7, 93.3 0.047 1.6E-06 43.9 3.0 22 101-122 40-61 (262)
383 3kta_A Chromosome segregation 93.3 0.048 1.7E-06 41.5 2.9 21 102-122 28-48 (182)
384 2gza_A Type IV secretion syste 93.3 0.042 1.4E-06 47.4 2.8 23 101-123 176-198 (361)
385 2iyv_A Shikimate kinase, SK; t 93.3 0.048 1.6E-06 41.7 2.9 21 102-122 4-24 (184)
386 1azs_C GS-alpha; complex (lyas 93.3 0.053 1.8E-06 47.7 3.5 25 97-121 37-61 (402)
387 2vli_A Antibiotic resistance p 93.3 0.033 1.1E-06 42.3 2.0 22 101-122 6-27 (183)
388 2ewv_A Twitching motility prot 93.2 0.044 1.5E-06 47.5 2.9 22 101-122 137-158 (372)
389 3tui_C Methionine import ATP-b 93.2 0.05 1.7E-06 47.3 3.2 22 102-123 56-77 (366)
390 2pez_A Bifunctional 3'-phospho 93.2 0.053 1.8E-06 41.3 3.0 23 100-122 5-27 (179)
391 2qby_A CDC6 homolog 1, cell di 93.2 0.044 1.5E-06 46.3 2.8 22 101-122 46-67 (386)
392 2p5t_B PEZT; postsegregational 93.2 0.051 1.7E-06 44.2 3.0 23 100-122 32-54 (253)
393 2fna_A Conserved hypothetical 93.1 0.045 1.5E-06 45.7 2.7 22 102-123 32-53 (357)
394 3b9p_A CG5977-PA, isoform A; A 93.1 0.049 1.7E-06 44.9 2.9 22 101-122 55-76 (297)
395 1sq5_A Pantothenate kinase; P- 93.0 0.049 1.7E-06 45.8 2.8 23 100-122 80-102 (308)
396 2og2_A Putative signal recogni 93.0 0.052 1.8E-06 47.0 3.0 23 100-122 157-179 (359)
397 3gd7_A Fusion complex of cysti 93.0 0.051 1.8E-06 47.6 2.9 22 102-123 49-70 (390)
398 3d31_A Sulfate/molybdate ABC t 93.0 0.037 1.2E-06 47.8 2.0 22 102-123 28-49 (348)
399 4e22_A Cytidylate kinase; P-lo 93.0 0.064 2.2E-06 43.7 3.3 22 100-121 27-48 (252)
400 1m7g_A Adenylylsulfate kinase; 92.9 0.058 2E-06 42.4 3.0 22 101-122 26-47 (211)
401 3syl_A Protein CBBX; photosynt 92.9 0.073 2.5E-06 44.0 3.7 22 100-121 67-88 (309)
402 4eaq_A DTMP kinase, thymidylat 92.9 0.059 2E-06 43.4 3.0 23 100-122 26-48 (229)
403 3zvl_A Bifunctional polynucleo 92.9 0.18 6.1E-06 44.3 6.3 23 100-122 258-280 (416)
404 1ofh_A ATP-dependent HSL prote 92.9 0.058 2E-06 44.4 3.0 21 102-122 52-72 (310)
405 2obl_A ESCN; ATPase, hydrolase 92.9 0.056 1.9E-06 46.5 3.0 23 102-124 73-95 (347)
406 1l8q_A Chromosomal replication 92.9 0.056 1.9E-06 45.3 2.9 22 101-122 38-59 (324)
407 2yhs_A FTSY, cell division pro 92.8 0.056 1.9E-06 48.9 3.0 23 100-122 293-315 (503)
408 1nlf_A Regulatory protein REPA 92.8 0.057 1.9E-06 44.4 2.9 22 101-122 31-52 (279)
409 3tqc_A Pantothenate kinase; bi 92.8 0.078 2.7E-06 45.2 3.8 22 100-121 92-113 (321)
410 2pt7_A CAG-ALFA; ATPase, prote 92.8 0.05 1.7E-06 46.4 2.5 22 102-123 173-194 (330)
411 3szr_A Interferon-induced GTP- 92.7 0.043 1.5E-06 50.7 2.2 23 102-124 47-69 (608)
412 1fnn_A CDC6P, cell division co 92.7 0.062 2.1E-06 45.6 3.0 22 102-123 46-67 (389)
413 1vht_A Dephospho-COA kinase; s 92.7 0.078 2.7E-06 41.7 3.4 23 100-122 4-26 (218)
414 3umf_A Adenylate kinase; rossm 92.6 0.094 3.2E-06 42.1 3.9 24 99-122 27-51 (217)
415 3cwq_A Para family chromosome 92.6 0.66 2.3E-05 36.3 8.9 52 147-201 67-119 (209)
416 1ltq_A Polynucleotide kinase; 92.6 0.068 2.3E-06 44.2 3.0 22 101-122 3-24 (301)
417 1d2n_A N-ethylmaleimide-sensit 92.6 0.068 2.3E-06 43.6 3.0 23 100-122 64-86 (272)
418 3nwj_A ATSK2; P loop, shikimat 92.6 0.067 2.3E-06 43.9 2.9 22 101-122 49-70 (250)
419 1nij_A Hypothetical protein YJ 92.5 0.049 1.7E-06 46.0 2.2 22 102-123 6-27 (318)
420 1p9r_A General secretion pathw 92.5 0.064 2.2E-06 47.4 2.9 22 102-123 169-190 (418)
421 2qmh_A HPR kinase/phosphorylas 92.5 0.072 2.5E-06 42.5 2.9 24 100-123 34-57 (205)
422 3t15_A Ribulose bisphosphate c 92.5 0.064 2.2E-06 44.7 2.8 22 101-122 37-58 (293)
423 4dzz_A Plasmid partitioning pr 92.4 0.24 8.2E-06 38.1 5.9 51 147-201 75-125 (206)
424 1oxx_K GLCV, glucose, ABC tran 92.4 0.037 1.3E-06 47.8 1.2 22 102-123 33-54 (353)
425 3h2y_A GTPase family protein; 92.4 0.037 1.3E-06 47.9 1.2 50 157-212 55-105 (368)
426 3cf0_A Transitional endoplasmi 92.3 0.073 2.5E-06 44.4 2.9 22 101-122 50-71 (301)
427 2r8r_A Sensor protein; KDPD, P 92.3 0.091 3.1E-06 42.7 3.3 22 100-121 6-27 (228)
428 3qf4_B Uncharacterized ABC tra 92.3 0.12 4.1E-06 47.5 4.5 22 102-123 383-404 (598)
429 2v1u_A Cell division control p 92.3 0.065 2.2E-06 45.3 2.6 22 101-122 45-66 (387)
430 2dpy_A FLII, flagellum-specifi 92.3 0.073 2.5E-06 47.3 3.0 22 102-123 159-180 (438)
431 4fcw_A Chaperone protein CLPB; 92.2 0.11 3.7E-06 42.9 3.9 23 101-123 48-70 (311)
432 1zuh_A Shikimate kinase; alpha 92.2 0.096 3.3E-06 39.3 3.2 22 101-122 8-29 (168)
433 2npi_A Protein CLP1; CLP1-PCF1 92.2 0.069 2.4E-06 47.7 2.7 22 102-123 140-161 (460)
434 1sxj_E Activator 1 40 kDa subu 92.1 0.065 2.2E-06 45.2 2.4 20 103-122 39-58 (354)
435 2oap_1 GSPE-2, type II secreti 92.1 0.078 2.7E-06 48.0 3.0 22 102-123 262-283 (511)
436 4a82_A Cystic fibrosis transme 92.0 0.1 3.5E-06 47.8 3.8 22 102-123 369-390 (578)
437 1sxj_D Activator 1 41 kDa subu 92.0 0.084 2.9E-06 44.3 3.0 21 103-123 61-81 (353)
438 1q3t_A Cytidylate kinase; nucl 92.0 0.099 3.4E-06 41.8 3.3 26 97-122 13-38 (236)
439 1sxj_C Activator 1 40 kDa subu 91.9 0.084 2.9E-06 44.6 2.9 21 103-123 49-69 (340)
440 2px0_A Flagellar biosynthesis 91.9 0.081 2.8E-06 44.4 2.7 21 101-121 106-126 (296)
441 3uk6_A RUVB-like 2; hexameric 91.9 0.079 2.7E-06 44.9 2.7 22 101-122 71-92 (368)
442 3r20_A Cytidylate kinase; stru 91.9 0.1 3.5E-06 42.4 3.2 22 100-121 9-30 (233)
443 2zts_A Putative uncharacterize 91.9 0.1 3.4E-06 41.4 3.2 20 102-121 32-51 (251)
444 2qby_B CDC6 homolog 3, cell di 91.7 0.088 3E-06 44.7 2.8 21 102-122 47-67 (384)
445 3pfi_A Holliday junction ATP-d 91.7 0.096 3.3E-06 43.9 3.0 21 102-122 57-77 (338)
446 3pxg_A Negative regulator of g 91.7 0.088 3E-06 46.9 2.9 22 101-122 202-223 (468)
447 3a8t_A Adenylate isopentenyltr 91.7 0.11 3.7E-06 44.7 3.3 21 102-122 42-62 (339)
448 1f2t_A RAD50 ABC-ATPase; DNA d 91.7 0.12 4.1E-06 38.7 3.2 19 103-121 26-44 (149)
449 1xwi_A SKD1 protein; VPS4B, AA 91.6 0.097 3.3E-06 44.2 2.9 23 101-123 46-68 (322)
450 2r62_A Cell division protease 91.5 0.049 1.7E-06 44.2 0.9 20 103-122 47-66 (268)
451 3eie_A Vacuolar protein sortin 91.5 0.1 3.5E-06 43.9 2.9 23 100-122 51-73 (322)
452 1p5z_B DCK, deoxycytidine kina 91.5 0.074 2.5E-06 43.3 2.0 23 100-122 24-46 (263)
453 2bjv_A PSP operon transcriptio 91.4 0.11 3.8E-06 42.1 3.0 23 101-123 30-52 (265)
454 3b60_A Lipid A export ATP-bind 91.4 0.1 3.5E-06 47.8 3.0 22 102-123 371-392 (582)
455 2f6r_A COA synthase, bifunctio 91.3 0.12 4.2E-06 42.7 3.2 23 100-122 75-97 (281)
456 1vma_A Cell division protein F 91.3 0.11 3.9E-06 43.8 3.0 21 101-121 105-125 (306)
457 1pzn_A RAD51, DNA repair and r 91.2 0.11 3.8E-06 44.6 2.9 23 101-123 132-154 (349)
458 3crm_A TRNA delta(2)-isopenten 91.2 0.12 4E-06 44.2 3.0 22 101-122 6-27 (323)
459 1um8_A ATP-dependent CLP prote 91.2 0.12 4E-06 44.4 3.0 22 101-122 73-94 (376)
460 3tqf_A HPR(Ser) kinase; transf 91.2 0.13 4.6E-06 40.1 3.0 23 101-123 17-39 (181)
461 1svm_A Large T antigen; AAA+ f 91.1 0.12 4E-06 45.1 3.0 22 101-122 170-191 (377)
462 1yqt_A RNAse L inhibitor; ATP- 91.1 0.13 4.5E-06 46.8 3.4 23 101-123 48-70 (538)
463 3exa_A TRNA delta(2)-isopenten 91.0 0.15 5.1E-06 43.5 3.5 22 102-123 5-26 (322)
464 3d3q_A TRNA delta(2)-isopenten 91.0 0.12 4.2E-06 44.4 3.0 22 101-122 8-29 (340)
465 2qgz_A Helicase loader, putati 91.0 0.13 4.6E-06 43.2 3.1 23 100-122 152-174 (308)
466 3foz_A TRNA delta(2)-isopenten 90.9 0.13 4.5E-06 43.8 3.0 21 102-122 12-32 (316)
467 1z6t_A APAF-1, apoptotic prote 90.9 0.14 4.7E-06 46.4 3.4 22 102-123 149-170 (591)
468 3euj_A Chromosome partition pr 90.9 0.13 4.3E-06 46.4 3.0 21 102-122 31-51 (483)
469 3lda_A DNA repair protein RAD5 90.8 0.12 4.2E-06 45.3 2.9 20 102-121 180-199 (400)
470 1hqc_A RUVB; extended AAA-ATPa 90.8 0.09 3.1E-06 43.7 1.9 22 101-122 39-60 (324)
471 1tue_A Replication protein E1; 90.8 0.1 3.4E-06 41.9 2.1 21 102-122 60-80 (212)
472 3d8b_A Fidgetin-like protein 1 90.7 0.13 4.6E-06 43.9 3.0 23 100-122 117-139 (357)
473 1iqp_A RFCS; clamp loader, ext 90.7 0.14 4.9E-06 42.2 3.0 22 102-123 48-69 (327)
474 1tf7_A KAIC; homohexamer, hexa 90.7 0.13 4.3E-06 46.5 2.9 19 103-121 42-60 (525)
475 4f4c_A Multidrug resistance pr 90.7 0.12 4.1E-06 51.9 3.0 21 102-122 1107-1127(1321)
476 2r44_A Uncharacterized protein 90.6 0.092 3.1E-06 44.0 1.8 21 102-122 48-68 (331)
477 1c9k_A COBU, adenosylcobinamid 90.6 0.16 5.6E-06 39.6 3.1 21 103-123 2-22 (180)
478 2qp9_X Vacuolar protein sortin 90.6 0.14 4.8E-06 43.9 2.9 22 101-122 85-106 (355)
479 3hws_A ATP-dependent CLP prote 90.5 0.15 5E-06 43.6 3.0 22 101-122 52-73 (363)
480 3ake_A Cytidylate kinase; CMP 90.5 0.16 5.4E-06 39.2 3.0 21 102-122 4-24 (208)
481 1jr3_A DNA polymerase III subu 90.5 0.15 5.1E-06 43.1 3.0 21 102-122 40-60 (373)
482 2h92_A Cytidylate kinase; ross 90.5 0.16 5.6E-06 39.7 3.0 23 100-122 3-25 (219)
483 2yl4_A ATP-binding cassette SU 90.4 0.11 3.7E-06 47.7 2.2 22 102-123 372-393 (595)
484 2z4s_A Chromosomal replication 90.3 0.15 5E-06 45.1 2.9 22 101-122 131-152 (440)
485 1w5s_A Origin recognition comp 90.3 0.12 4.1E-06 44.2 2.3 22 102-123 52-75 (412)
486 3qf7_A RAD50; ABC-ATPase, ATPa 90.2 0.17 5.9E-06 43.6 3.2 19 103-121 26-44 (365)
487 1sxj_B Activator 1 37 kDa subu 90.2 0.16 5.6E-06 41.8 3.0 21 103-123 45-65 (323)
488 3vfd_A Spastin; ATPase, microt 90.1 0.16 5.4E-06 43.8 3.0 22 101-122 149-170 (389)
489 3m6a_A ATP-dependent protease 90.1 0.15 5.2E-06 46.3 2.9 22 101-122 109-130 (543)
490 3pvs_A Replication-associated 90.1 0.16 5.5E-06 45.1 3.0 22 101-122 51-72 (447)
491 2chq_A Replication factor C sm 90.0 0.17 5.8E-06 41.6 2.9 20 103-122 41-60 (319)
492 2ocp_A DGK, deoxyguanosine kin 90.0 0.19 6.4E-06 40.2 3.1 22 101-122 3-24 (241)
493 2grj_A Dephospho-COA kinase; T 90.0 0.22 7.6E-06 39.0 3.4 25 99-123 11-35 (192)
494 3j16_B RLI1P; ribosome recycli 90.0 0.17 5.9E-06 46.7 3.2 23 101-123 104-126 (608)
495 4b4t_K 26S protease regulatory 90.0 0.17 5.9E-06 44.8 3.0 21 102-122 208-228 (428)
496 3ozx_A RNAse L inhibitor; ATP 89.9 0.17 5.8E-06 46.1 3.1 22 102-123 27-48 (538)
497 3ec1_A YQEH GTPase; atnos1, at 89.9 0.063 2.2E-06 46.5 0.2 50 157-212 57-107 (369)
498 1sky_E F1-ATPase, F1-ATP synth 89.9 0.19 6.4E-06 45.1 3.3 22 102-123 153-174 (473)
499 1g8p_A Magnesium-chelatase 38 89.9 0.094 3.2E-06 44.0 1.2 21 102-122 47-67 (350)
500 4f4c_A Multidrug resistance pr 89.9 0.24 8.3E-06 49.8 4.4 21 102-122 446-466 (1321)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.97 E-value=1.9e-30 Score=212.93 Aligned_cols=118 Identities=19% Similarity=0.423 Sum_probs=100.5
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCc
Q 028037 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (215)
Q Consensus 95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~ 173 (215)
+.++..|||+|||++|||||||++||+++.|. .+.+|+|.++..+.+.+++..++++||||+|+++|..+++.||++++
T Consensus 8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~ 87 (216)
T 4dkx_A 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA 87 (216)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence 34567899999999999999999999999999 78889999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 174 AILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 174 ~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
++++|||+++++||+++..|++++++...+++|++||+.
T Consensus 88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgN 126 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 126 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEee
Confidence 999999999999999999999999988878899999864
No 2
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.92 E-value=2.6e-24 Score=170.92 Aligned_cols=114 Identities=19% Similarity=0.410 Sum_probs=102.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+++|||+|++++..++..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 45899999999999999999999999998 66778898998889999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+++..|+.++.+....++|++||+
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~ 133 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG 133 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 99999999999999999999998877788988775
No 3
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.92 E-value=7.2e-24 Score=167.90 Aligned_cols=113 Identities=22% Similarity=0.486 Sum_probs=105.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||+++|.++.+. .+.++.+.++....+..++..+.+.+||++|++++..++..+++++|++++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 4799999999999999999999999998 777888999888888889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
|||++++++|+.+..|+.++.+....+.|++||+
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 134 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVG 134 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 9999999999999999999998876788888775
No 4
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.6e-24 Score=173.67 Aligned_cols=114 Identities=20% Similarity=0.412 Sum_probs=106.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|+++.|. .+.+|++.++..+.+.+++..+.+++|||+|+++|..++..+++++|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 35799999999999999999999999998 77789999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+++..|++++.+....++|++||+
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 138 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 138 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 99999999999999999999998877788977764
No 5
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=174.34 Aligned_cols=115 Identities=26% Similarity=0.455 Sum_probs=99.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.|. .+.+|++.++..+.+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 44799999999999999999999999998 77788899998889999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+|||+++++||+++..|++++.+....++|++||+.
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~N 142 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 142 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 999999999999999999999988777889887753
No 6
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.92 E-value=3.7e-24 Score=170.03 Aligned_cols=114 Identities=13% Similarity=0.136 Sum_probs=96.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
....+||+++|++|||||||+++|+++.|. .+.+|++.++ ...+.+++..+.++||||+|+++|..+ ..+++++|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 345799999999999999999999999988 6777888776 456778999999999999999999876 6799999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCC---CCceEEEEee
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ---VTKQSLFFHI 212 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~~---~~~piIlVa~ 212 (215)
++|||+++++||+++..|+.++.+... .++|++||+.
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 135 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGN 135 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEE
Confidence 999999999999999999999987642 5788777753
No 7
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.2e-23 Score=162.20 Aligned_cols=113 Identities=23% Similarity=0.435 Sum_probs=105.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 5789999999999999999999999988 677899999888888999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
|||+++++||+++..|+.++.+....+.|+++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 115 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVG 115 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 9999999999999999999998877788987764
No 8
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.91 E-value=3.9e-24 Score=167.98 Aligned_cols=114 Identities=20% Similarity=0.460 Sum_probs=82.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||+++|.++.+. .+.++++.++..+.+.+++..+.+++||++|+++|..++..+++++|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 4799999999999999999999999988 777899999988889999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|||+++++||+++..|+.++.+....++|++||+.
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 121 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999999999999999988767889887753
No 9
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.91 E-value=1.3e-23 Score=161.95 Aligned_cols=114 Identities=21% Similarity=0.449 Sum_probs=105.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+++||++|++++..++..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 45799999999999999999999999988 66778898988888999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+++..|+.++.+...+++|++||+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~ 118 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSG 118 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 99999999999999999999998877789988775
No 10
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=166.41 Aligned_cols=114 Identities=25% Similarity=0.418 Sum_probs=105.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++.|.++..+.+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45799999999999999999999999998 67778899998888999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||++++.+|+.+..|+.++......++|++||+
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~ 137 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVG 137 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 99999999999999999999988776788887775
No 11
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.91 E-value=7e-24 Score=172.27 Aligned_cols=116 Identities=22% Similarity=0.367 Sum_probs=99.9
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCc
Q 028037 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (215)
Q Consensus 95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~ 173 (215)
......+||+++|++|||||||+++|+++.|. .+.+|++.++ .+.+.+++..+.++||||+|+++|..++..+++++|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 34456899999999999999999999999998 6778888776 467778888999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHH-HHHHHHHHHhHCCCCceEEEEee
Q 028037 174 AILFMFDLTSRCTLNS-IVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 174 ~iilvfdit~~~Sf~~-i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
++|+|||+++++||++ +..|++++.+.. +++|++||+.
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~n 139 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGC 139 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 9999999999999999 689999999886 5789888763
No 12
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.91 E-value=5e-24 Score=169.78 Aligned_cols=114 Identities=21% Similarity=0.429 Sum_probs=100.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+++|||+|++++..++..+++++|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35799999999999999999999999988 77788899999899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+++..|++.+......++|++||+
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~ 138 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 99999999999999999999998887788988775
No 13
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.91 E-value=6e-24 Score=168.69 Aligned_cols=110 Identities=17% Similarity=0.303 Sum_probs=95.8
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (215)
Q Consensus 96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ 174 (215)
.....+||+++|++|||||||+++|+++.|. .+.+| +.++ .+.+.+++..+.++||||+|+++|. +++++|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 3456899999999999999999999999998 55555 4444 4788899999999999999999876 8889999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 175 iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
+++|||+++++||+++..|+.++..... .++|++||+.
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 127 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGT 127 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 9999999999999999999999988764 5789888753
No 14
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.91 E-value=9.9e-24 Score=163.15 Aligned_cols=114 Identities=27% Similarity=0.505 Sum_probs=98.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 34799999999999999999999999998 77789999988888889999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+++..|++++.+....++|+++|+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 118 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 118 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 99999999999999999999988766678887765
No 15
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.91 E-value=1.4e-23 Score=163.31 Aligned_cols=114 Identities=21% Similarity=0.431 Sum_probs=105.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 34799999999999999999999999988 67778898988888999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||++++++|+++..|+.++......+.|+++|+
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 127 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 99999999999999999999998887788987775
No 16
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.91 E-value=1.3e-23 Score=163.52 Aligned_cols=117 Identities=18% Similarity=0.442 Sum_probs=105.8
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCc
Q 028037 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (215)
Q Consensus 95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~ 173 (215)
..++..+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+|||+|++++..++..+++++|
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 88 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 88 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 33456799999999999999999999999998 77788899999899999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 174 AILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 174 ~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++++|||+++++||+++..|+.++......++|+++|.
T Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 126 (179)
T 2y8e_A 89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVG 126 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 99999999999999999999999988776788877765
No 17
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.91 E-value=2.4e-23 Score=162.74 Aligned_cols=115 Identities=25% Similarity=0.459 Sum_probs=106.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
....+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+.+||++|++++..++..+++++|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 456799999999999999999999999998 6678889999888899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++|||++++.+|+.+..|+.++.+...+++|++||+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~ 124 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG 124 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 999999999999999999999999877788988775
No 18
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=2.7e-23 Score=162.34 Aligned_cols=116 Identities=25% Similarity=0.510 Sum_probs=98.5
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ 174 (215)
....+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+++||++|++++..++..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 346899999999999999999999999985 566788999988888899999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 175 iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+++|||+++++||+++..|+.++......++|++||+.
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 124 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 99999999999999999999999988777889887753
No 19
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.91 E-value=8.3e-24 Score=167.54 Aligned_cols=114 Identities=21% Similarity=0.471 Sum_probs=103.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC-ccchhhccCCcEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAI 175 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~-~~~~~~~~~a~~i 175 (215)
...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+|||+|++++. .++..+++++|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 34799999999999999999999999998 677889999988999999999999999999999998 8899999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
|+|||+++++||+++..|++++.+.. ..++|++||+
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 134 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 99999999999999999999998875 4678877765
No 20
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.91 E-value=1.4e-23 Score=164.08 Aligned_cols=109 Identities=16% Similarity=0.256 Sum_probs=94.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
...+||+++|++|||||||+++|.++.|..+.+|++..+ .+.+.+++..+.+++|||+|+++ ..|++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 467999999999999999999999999987777877554 67788899999999999999987 568899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC---CCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWN---QVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~---~~~~piIlVa~ 212 (215)
|||+++++||+++..|++++.... ..++|++||+.
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 116 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGT 116 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 999999999999999877765543 36789888864
No 21
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.91 E-value=2.2e-23 Score=163.84 Aligned_cols=115 Identities=22% Similarity=0.396 Sum_probs=106.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+++||++|++++..++..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 44799999999999999999999999998 77788999998899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+|||+++++||+++..|+.++......++|++||+.
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 123 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 123 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 999999999999999999999988777899887753
No 22
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.91 E-value=3.3e-23 Score=166.22 Aligned_cols=114 Identities=19% Similarity=0.432 Sum_probs=106.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 34799999999999999999999999998 77889999998889999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+.+..|++++......++|++||+
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 120 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 99999999999999999999998877788887775
No 23
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.91 E-value=3e-23 Score=164.37 Aligned_cols=115 Identities=20% Similarity=0.443 Sum_probs=107.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 35799999999999999999999999998 77789999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+|||+++++||+.+..|+.++.+....++|++||+.
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~n 129 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 999999999999999999999998877899887753
No 24
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.91 E-value=4.1e-23 Score=159.43 Aligned_cols=114 Identities=25% Similarity=0.434 Sum_probs=105.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++.|.++....+.+++..+.+.+|||+|++++..+...+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999999988 77788999988888999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||++++.||+++..|++++.....+++|+++|+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~ 118 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG 118 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 99999999999999999999999877889988774
No 25
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=9.3e-24 Score=168.91 Aligned_cols=114 Identities=25% Similarity=0.425 Sum_probs=94.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.|. .+.++.|.++....+.+++..+.++|||++|++++..++..+++++|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 44799999999999999999999999988 77788899998889999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+++..|++++......++|++||+
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 140 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVG 140 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 99999999999999999999998876778887775
No 26
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.90 E-value=2.3e-23 Score=168.48 Aligned_cols=113 Identities=25% Similarity=0.402 Sum_probs=100.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.|. .+.+|++.++ .+.+.+++..+.++||||+|+++|..++..+++++|++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 34799999999999999999999999998 6677888776 456777888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+|||+++++||+++ ..|++++++.. .+.|++||+.
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~n 140 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGC 140 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEe
Confidence 99999999999999 79999998876 5788888753
No 27
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.4e-23 Score=168.79 Aligned_cols=114 Identities=25% Similarity=0.445 Sum_probs=98.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.|. .+.++.+.++....+.+++..+.++||||+|+++|..++..+++++|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 34799999999999999999999999998 77789999998888999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+++..|+.++......++|++||+
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~ 125 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIG 125 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 99999999999999999999998876788988774
No 28
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.90 E-value=4.7e-23 Score=163.84 Aligned_cols=115 Identities=19% Similarity=0.402 Sum_probs=101.8
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (215)
Q Consensus 96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ 174 (215)
.....+||+++|++|||||||+++|.++.+. .+.+|++.++. ..+.+++..+.+++|||+|+++|..++..+++++|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3456899999999999999999999999998 67778887765 567789999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEee
Q 028037 175 ILFMFDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 175 iilvfdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+++|||+++++||+++ ..|++.+.+.. .++|++||+.
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~n 135 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGL 135 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 9999999999999998 68999998776 5788887753
No 29
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.90 E-value=6.4e-23 Score=160.75 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=101.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++.+.++ ...+.+++..+.+++||++|+++|..++..+++++|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 45799999999999999999999999988 6777888777 678888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
+|||+++++||+.+..|+.++.+... .++|++||+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n 119 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 99999999999999999999977653 5788877753
No 30
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=168.70 Aligned_cols=114 Identities=23% Similarity=0.423 Sum_probs=96.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.++||||+|++++..++..+++++|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 45799999999999999999999999998 77788898998889999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+++..|+.++......++|++||+
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 137 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 137 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 99999999999999999999998877788988775
No 31
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.90 E-value=6.7e-23 Score=159.79 Aligned_cols=113 Identities=18% Similarity=0.397 Sum_probs=102.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 35799999999999999999999999988 77889999999899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+.+..|+.++.+.. .++|++||+
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~ 120 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVG 120 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence 9999999999999999999998876 578877665
No 32
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.90 E-value=2.7e-23 Score=163.19 Aligned_cols=116 Identities=9% Similarity=0.155 Sum_probs=103.2
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (215)
Q Consensus 96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ 174 (215)
.....+||+++|++|||||||+++|.++.+. .+.++++.++ ...+.+++..+.+++||++|++++..++..+++++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 3456899999999999999999999999988 6777887776 6788889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhH-CCCCceEEEEee
Q 028037 175 ILFMFDLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFHI 212 (215)
Q Consensus 175 iilvfdit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa~ 212 (215)
+++|||+++++||+++..|+.++.+. ...++|++||+.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n 131 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 99999999999999999999999764 346788777753
No 33
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.90 E-value=4.3e-23 Score=164.73 Aligned_cols=115 Identities=22% Similarity=0.337 Sum_probs=93.9
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (215)
Q Consensus 96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ 174 (215)
.....+||+++|++|||||||+++|.++.|. .+.+|++..+ ...+.+++..+.+++|||+|+++|..++..+++++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 3445799999999999999999999999988 6677777555 5677889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037 175 ILFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 175 iilvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~ 212 (215)
+++|||+++++||+++. .|++++.... .++|++||+.
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~n 132 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGT 132 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 99999999999999997 7999999876 4788777753
No 34
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1e-24 Score=173.26 Aligned_cols=115 Identities=21% Similarity=0.459 Sum_probs=106.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.|. .+.++.+.++....+.+++..+.++|||++|++++..++..+++++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 34799999999999999999999999988 77778888998889999988999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+|||+++++||+++..|++++......++|++||+.
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 136 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN 136 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 999999999999999999999998877899888753
No 35
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.90 E-value=2e-23 Score=162.84 Aligned_cols=104 Identities=25% Similarity=0.490 Sum_probs=96.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECC-eEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~-~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
...+||+++|++|||||||+++|.++.|. .+.+|++.++..+.+.+++ ..+.+++|||+|++++..++..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 45799999999999999999999999998 6778999999888898876 689999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHC
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWN 201 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~ 201 (215)
++|||+++++||+++..|+.++.++.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~ 109 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVS 109 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998754
No 36
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.90 E-value=4.3e-23 Score=162.95 Aligned_cols=113 Identities=25% Similarity=0.402 Sum_probs=100.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.|. .+.+|.+.++ ...+.+++..+.+.+||++|+++|..++..+++++|+++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 34799999999999999999999999998 6777887766 456778888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+|||+++++||+++ ..|+++++++. +++|++||+.
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~n 119 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGC 119 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEE
Confidence 99999999999999 78999998876 5789888753
No 37
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=4.5e-23 Score=164.01 Aligned_cols=114 Identities=23% Similarity=0.435 Sum_probs=106.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.|. .+.++.|.++....+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 45799999999999999999999999988 77889999988888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||++++++|+++..|+.++.+....++|++||+
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~ 135 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAG 135 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 99999999999999999999999877788988775
No 38
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.90 E-value=2.1e-23 Score=161.03 Aligned_cols=112 Identities=24% Similarity=0.512 Sum_probs=98.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 589999999999999999999999998 7778889898888888899899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
||+++++||+++..|+.++.+....+.|+++|+
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 115 (170)
T 1g16_A 83 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVG 115 (170)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 999999999999999999999887788987775
No 39
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.90 E-value=6.7e-23 Score=163.86 Aligned_cols=114 Identities=24% Similarity=0.476 Sum_probs=105.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 4799999999999999999999999998 777888999988888999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|||++++++|+++..|+.++......+.|++||+-
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 121 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999999999999999988767889887753
No 40
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=168.73 Aligned_cols=115 Identities=13% Similarity=0.181 Sum_probs=99.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc-cchhhccCCcEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAI 175 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~-~~~~~~~~a~~i 175 (215)
...+||+++|++|||||||+++|.+..+. .+.++++.++..+.+.+++..+.+.+|||+|++++.. ++..|++++|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 34799999999999999999999866555 4556777788888888999999999999999998765 788899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
|+|||+++++||+++..|+.++..... .++|++||+.
T Consensus 101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 138 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 138 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEee
Confidence 999999999999999999999988764 5789887753
No 41
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.90 E-value=4e-23 Score=160.96 Aligned_cols=115 Identities=23% Similarity=0.414 Sum_probs=101.8
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
....+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 345799999999999999999999999988 7778999999888999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCC----CCceEEEEe
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ----VTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~~----~~~piIlVa 211 (215)
++|||+++++||+++..|++++..... .++|+++|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~ 123 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEE
Confidence 999999999999999999999987654 578877765
No 42
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=6.4e-23 Score=162.86 Aligned_cols=114 Identities=16% Similarity=0.311 Sum_probs=101.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
....+||+++|++|||||||+++|.++.|. .+.+|++.++ ...+.+++..+.+++||++|+++|..++..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 345799999999999999999999999998 6677777665 46677888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037 176 LFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~ 212 (215)
++|||+++++||+++. .|+.++.+.. +++|++||+.
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~n 130 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGT 130 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 9999999999999998 8999999876 4688777753
No 43
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.90 E-value=4.4e-23 Score=165.24 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=95.7
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (215)
Q Consensus 96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ 174 (215)
+....+||+++|++|||||||+++|.++.+. .+.++.+.++ ...+.+++..+.+.+|||+|++++..++..+++++|+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 3455899999999999999999999999998 6667888776 6777778888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 175 iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
+++|||+++++||+.+..|+.++.+... .++|++||+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 136 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG 136 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 9999999999999999999999987643 578877775
No 44
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.90 E-value=6.3e-23 Score=165.25 Aligned_cols=112 Identities=20% Similarity=0.400 Sum_probs=98.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.|. .+.+|++.++ ...+.+++..+.+++|||+|+++|..++..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 45799999999999999999999999998 6777887655 466778888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+++. .|+++++.+. +++|++||+
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~ 120 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVG 120 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence 999999999999997 8999999886 478877775
No 45
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.90 E-value=9.9e-23 Score=158.81 Aligned_cols=114 Identities=12% Similarity=0.174 Sum_probs=101.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
....+||+++|++|||||||+++|.++.+. .+.++++.++. ..+.+++..+.+.+||++|++++..++..+++++|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 345799999999999999999999999988 67778887765 7778899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHh-HCCCCceEEEEe
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARK-WNQVTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~-~~~~~~piIlVa 211 (215)
++|||+++++||+++..|+.++.+ ....++|++||+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 121 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 999999999999999999999954 445678877775
No 46
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.90 E-value=5e-23 Score=158.67 Aligned_cols=112 Identities=17% Similarity=0.357 Sum_probs=103.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 4799999999999999999999999998 777888999998999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
|||+++++||+++..|+.++.... .+.|+++|+
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~ 116 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEV-GDIPTALVQ 116 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence 999999999999999999998876 567777665
No 47
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=6.3e-23 Score=162.21 Aligned_cols=115 Identities=23% Similarity=0.481 Sum_probs=105.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
....+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.||||+|++++..++..+++++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 356799999999999999999999999998 7778889999888999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
|+|||++++++|+++..|+.++.+... .++|++||+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~ 128 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 128 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEE
Confidence 999999999999999999999987653 568877665
No 48
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.90 E-value=5.5e-24 Score=170.24 Aligned_cols=114 Identities=20% Similarity=0.455 Sum_probs=101.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.||||+|++++..++..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45799999999999999999999999988 66778888998899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+++..|+.++......++|++||+
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~ 145 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 145 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 99999999999999999999988877789988875
No 49
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.89 E-value=7.5e-23 Score=158.89 Aligned_cols=113 Identities=17% Similarity=0.254 Sum_probs=90.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCC--CCccchhhccCCcEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVPIACKDAVAIL 176 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~--~~~~~~~~~~~a~~ii 176 (215)
..+||+++|++|||||||+++|.++.+....++.|.++..+.+.+++..+.+.+||++|++. +..+...+++.+|+++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i 82 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV 82 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence 46899999999999999999999999886667788888888899999999999999999998 6677788999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
+|||+++++||+++..|+.++.+.. ..++|++||+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~ 118 (175)
T 2nzj_A 83 IVYSIADRGSFESASELRIQLRRTHQADHVPIILVG 118 (175)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEE
Confidence 9999999999999999999998753 3578877765
No 50
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.89 E-value=1e-22 Score=156.81 Aligned_cols=112 Identities=14% Similarity=0.209 Sum_probs=99.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||+++|.++.+. .+.+|.+..+ .+.+.+++..+.+++||++|++++..++..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999998 6777777665 4667788889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
|||+++++||+++..|++++.+.. ..+.|+++|+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 115 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEE
Confidence 999999999999999999998764 3578877765
No 51
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=5.3e-23 Score=167.87 Aligned_cols=115 Identities=15% Similarity=0.218 Sum_probs=97.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCC--CCCccccceeeeEEEEEEECCeEEEEEEEecCCCCC-CCccchhhccCCcE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVA 174 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~--f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~-~~~~~~~~~~~a~~ 174 (215)
...+||+++|++|||||||+++|++.. |....+++|.+++.+.+.+++..+.+.+|||+|++. +..+...|++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 447999999999999999999999644 455556788898888999999999999999999987 56677888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 175 ILFMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 175 iilvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
+|+|||++|++||+++..|+.++.+.. ..++|+|||+.
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgN 153 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 153 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 999999999999999999999987643 35789888753
No 52
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.89 E-value=3.6e-23 Score=168.08 Aligned_cols=116 Identities=23% Similarity=0.358 Sum_probs=105.9
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCc
Q 028037 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (215)
Q Consensus 95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~ 173 (215)
......+||+++|++|||||||+++|+.+.+. .+.++.|.++....+.+++..+.+++|||+|++.+..++..+++++|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 34456899999999999999999999988887 66788899999889999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 174 AILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 174 ~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++++|||+++++||+++..|+.++.+.. .++|++||+
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~ 126 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCG 126 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence 9999999999999999999999999887 578877775
No 53
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.89 E-value=2.3e-22 Score=157.54 Aligned_cols=112 Identities=21% Similarity=0.420 Sum_probs=99.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
+..+||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+++|||+|+++|..++..+++++|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 46799999999999999999999999998 6667776554 566788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+++. .|+..+.+... +.|++||+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~ 116 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVG 116 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEE
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEe
Confidence 999999999999997 79999998764 78877765
No 54
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=1.4e-22 Score=162.66 Aligned_cols=113 Identities=23% Similarity=0.498 Sum_probs=104.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||+++|+++.+. .+.++++.++....+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 98 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIIL 98 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999988 777899999988899999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
|||++++.+|+.+..|+.++......++|++||+
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 132 (213)
T 3cph_A 99 VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG 132 (213)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 9999999999999999999998876778987775
No 55
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.89 E-value=1.6e-22 Score=159.18 Aligned_cols=114 Identities=22% Similarity=0.406 Sum_probs=102.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeE-EEEEEECCe---------EEEEEEEecCCCCCCCccch
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLI-NKTLMVQGA---------RIAFSIWDVGGDSRSFDHVP 166 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~-~~~v~~~~~---------~~~l~i~Dt~G~e~~~~~~~ 166 (215)
...+||+++|++|||||||+++|.++.+. .+.++.+.++. .+.+..++. .+.+.+||++|++++..++.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 45799999999999999999999999988 77788898887 667777766 79999999999999999999
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
.+++++|++|+|||++++.+|+++..|+.++..... .++|++||+
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 134 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCG 134 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEE
T ss_pred HHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 999999999999999999999999999999988775 678877765
No 56
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.89 E-value=7.9e-23 Score=159.51 Aligned_cols=114 Identities=22% Similarity=0.376 Sum_probs=90.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.++ +..+.+.+||++|++++..++..+++++|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 34799999999999999999999999988 777888889888888887 6678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCC----CCceEEEEe
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ----VTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~~----~~~piIlVa 211 (215)
++|||++++++|+++..|+.++..... .++|++||+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 125 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILG 125 (182)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEE
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEE
Confidence 999999999999999999999987653 578877765
No 57
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.89 E-value=1.4e-22 Score=156.72 Aligned_cols=113 Identities=13% Similarity=0.211 Sum_probs=87.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc-cchhhccCCcEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAILF 177 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~-~~~~~~~~a~~iil 177 (215)
.+||+++|++|||||||+++|.+..+. .+.++.+.++....+.+++..+.+.+||++|++++.. ++..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 489999999999999999999988877 5556667888888899999999999999999999876 77888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
|||+++++||+++..|+.++.+... .++|++||+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n 117 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 117 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEee
Confidence 9999999999999999999988764 4788887763
No 58
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.89 E-value=3.3e-22 Score=160.24 Aligned_cols=112 Identities=21% Similarity=0.393 Sum_probs=99.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++++.++. ..+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 35799999999999999999999999998 67778887765 45778899999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||++++++|+++ ..|++.+.+.. .++|++||+
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~ 136 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVG 136 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence 99999999999999 68999998876 467877665
No 59
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.89 E-value=2e-22 Score=162.26 Aligned_cols=113 Identities=20% Similarity=0.398 Sum_probs=97.6
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
....+||+++|++|||||||+++|+++.+. .+.++++ +.....+.+++..+.+++|||+|+++|..++..+++++|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 456799999999999999999999999998 6666665 44567778889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037 176 LFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa 211 (215)
++|||+++++||+++. .|+..+.+.. .+.|++||+
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~ 141 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 141 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence 9999999999999997 8999999887 678877775
No 60
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.89 E-value=2.5e-22 Score=160.48 Aligned_cols=113 Identities=15% Similarity=0.241 Sum_probs=94.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCC-CCccchhhccCCcEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAI 175 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~--~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~-~~~~~~~~~~~a~~i 175 (215)
..+||+++|++|||||||+++|++. .|....+++|.+++.+.+.+++..+.+.+|||+|++. +..+...|++.+|++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 3699999999999999999999964 3455556788888888899999999999999999887 667888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
++|||++|++||+++..|+..+.+.. ..++|++||+
T Consensus 85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~ 121 (192)
T 2cjw_A 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121 (192)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEE
Confidence 99999999999999999999988764 3578888775
No 61
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2.8e-22 Score=161.39 Aligned_cols=112 Identities=21% Similarity=0.406 Sum_probs=95.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++++.++. ..+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 46799999999999999999999999998 66677777665 34778899999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||++++++|+++ ..|++.+.+.. +++|+++|+
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~ 136 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVA 136 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence 99999999999999 68999998876 567777664
No 62
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.89 E-value=2e-22 Score=157.86 Aligned_cols=115 Identities=13% Similarity=0.218 Sum_probs=99.8
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (215)
Q Consensus 96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ 174 (215)
..+..+||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+.+||++|++++..++..+++++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 3456899999999999999999999999988 6666777655 4567788889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 175 iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
+++|||++++++|+.+..|+.++.+... .++|++||+
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 130 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 9999999999999999999999988764 478877765
No 63
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.89 E-value=1.8e-22 Score=161.44 Aligned_cols=114 Identities=25% Similarity=0.389 Sum_probs=103.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 34799999999999999999999999988 77788899999888999998999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCC----CCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQ----VTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~----~~~piIlVa 211 (215)
+|||++++++|+++..|+.++..... .++|++||+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~ 124 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 124 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 99999999999999999999987653 467877765
No 64
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.89 E-value=2.9e-23 Score=165.73 Aligned_cols=115 Identities=10% Similarity=0.286 Sum_probs=76.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC--CCC-CccccceeeeEEEEEEECCe--EEEEEEEecCCCCCCCccchhhccCC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMVQGA--RIAFSIWDVGGDSRSFDHVPIACKDA 172 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~--~f~-~~~~t~g~~~~~~~v~~~~~--~~~l~i~Dt~G~e~~~~~~~~~~~~a 172 (215)
...+||+++|++|||||||+++|.++ .|. ++.+|++.++..+.+.+++. .+.+.+|||+|++++..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45799999999999999999999999 887 77788888888889999887 89999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhHCC---CCceEEEEee
Q 028037 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ---VTKQSLFFHI 212 (215)
Q Consensus 173 ~~iilvfdit~~~Sf~~i~~wl~~i~~~~~---~~~piIlVa~ 212 (215)
|++|+|||+++++||+++..|+.++..... .++|++||+-
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 140 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVAN 140 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEE
Confidence 999999999999999999999999999876 6889887763
No 65
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.89 E-value=4.3e-22 Score=157.37 Aligned_cols=114 Identities=11% Similarity=0.203 Sum_probs=89.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
.+..+||+++|++|||||||+++|.++.+. .+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 356799999999999999999999999888 5556666544 46778889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
++|||+++.++|+++..|++++..... .++|++||+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~ 133 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 999999999999999999999988654 568877765
No 66
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.89 E-value=3.8e-22 Score=153.06 Aligned_cols=112 Identities=13% Similarity=0.216 Sum_probs=99.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||+++|.++.+. .+.++.+. ...+.+.+++..+.+++||++|++++..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999988 56666664 446778889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
|||+++++||+++..|+.++.+... .+.|+++|+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 115 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 9999999999999999999987653 578877765
No 67
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.88 E-value=2.2e-22 Score=155.19 Aligned_cols=112 Identities=14% Similarity=0.209 Sum_probs=76.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf 179 (215)
.+||+++|++|||||||+++|.+..+....++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 5899999999999999999999877765556666555 567788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 180 DLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 180 dit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
|+++++||+++..|+.++.+.. ..++|+++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n 114 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGN 114 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEE
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 9999999999999999998754 36788887753
No 68
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.88 E-value=4e-23 Score=166.94 Aligned_cols=114 Identities=24% Similarity=0.471 Sum_probs=102.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCe----------EEEEEEEecCCCCCCCccch
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA----------RIAFSIWDVGGDSRSFDHVP 166 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~----------~~~l~i~Dt~G~e~~~~~~~ 166 (215)
...+||+++|++|||||||+++|.++.+. .+.+|++.++..+.+.+++. .+.++||||+|+++|..++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 34799999999999999999999999998 67788899988888888776 79999999999999999999
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
.+++++|++|+|||++++++|+++..|+.++..... .++|++||+
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~ 148 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIG 148 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEE
Confidence 999999999999999999999999999999877654 678877765
No 69
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.88 E-value=4.8e-22 Score=157.23 Aligned_cols=111 Identities=23% Similarity=0.429 Sum_probs=100.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeE------------------------------
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGAR------------------------------ 147 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~------------------------------ 147 (215)
..+||+++|++|||||||+++|+++.+. .+.++++.++....+.+++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 4799999999999999999999999998 777899999988888887765
Q ss_pred -------EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 148 -------IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 148 -------~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+.+.+|||+|++++..++..+++.+|++++|||++++++|+++..|+.++.+..+ .|+++|+
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~ 154 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVA 154 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEE
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEE
Confidence 8999999999999999999999999999999999999999999999999988764 7877765
No 70
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.88 E-value=4.7e-22 Score=158.68 Aligned_cols=115 Identities=13% Similarity=0.208 Sum_probs=101.6
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i 175 (215)
....+||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+.+||++|++++..++..+++++|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 455799999999999999999999999988 6666777555 46678889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI 212 (215)
Q Consensus 176 ilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~ 212 (215)
++|||+++++||+.+..|+.++.+... .++|++||+-
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 127 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 127 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 999999999999999999999988764 5788877753
No 71
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.88 E-value=9.7e-23 Score=159.42 Aligned_cols=112 Identities=20% Similarity=0.394 Sum_probs=84.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.|. .+.+|++..+. ..+.+++..+.+++|||+|+++|..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 44799999999999999999999999988 66677775553 34566778899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+++. .|++++.+.. .++|++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~ 119 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVG 119 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence 999999999999997 7999999886 478877765
No 72
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.88 E-value=4.6e-22 Score=152.75 Aligned_cols=113 Identities=13% Similarity=0.218 Sum_probs=97.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
+..+||+++|++|||||||++++.++.+. .+.++.+.++ ...+.+++..+.+.+||++|++++..++..+++++|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 34799999999999999999999999988 6666777655 456678899999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
+|||++++++|+.+..|+.++.+... .+.|+++|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 116 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 99999999999999999999988764 478877765
No 73
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.88 E-value=1e-21 Score=154.27 Aligned_cols=112 Identities=12% Similarity=0.218 Sum_probs=96.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||+++|.++.+. .+.++++ +.....+.+++..+.+++|||+|++++..++..+++++|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4799999999999999999999999988 5555654 5555777889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
|||+++++||+.+..|+.++..... .+.|+++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~ 116 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 9999999999999999999988653 578887775
No 74
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.88 E-value=3.9e-22 Score=161.62 Aligned_cols=112 Identities=25% Similarity=0.409 Sum_probs=80.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.+|++..+ ...+.+++..+.+++|||+|+++|..++..+++++|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 45799999999999999999999999988 6666776554 566788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+++. .|++++.+.. .++|++||+
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~ 145 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVG 145 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence 999999999999997 7999998876 568877765
No 75
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.88 E-value=1.8e-21 Score=155.21 Aligned_cols=115 Identities=23% Similarity=0.423 Sum_probs=105.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||++++.+..+. .+.+|++.++....+.+++..+.+++||++|++++..++..+++++++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 34799999999999999999999999998 78889999998899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+|||+++..+|+++..|+.++.+....+.|+++|+.
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~n 142 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 999999999999999999998877666788777653
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.87 E-value=1.1e-22 Score=160.73 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=96.7
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc-----------cccceeeeEEEEE-EECCeEEEEEEEecCCCCCCC
Q 028037 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS-----------LQMAGLNLINKTL-MVQGARIAFSIWDVGGDSRSF 162 (215)
Q Consensus 96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~-----------~~t~g~~~~~~~v-~~~~~~~~l~i~Dt~G~e~~~ 162 (215)
.....+||+++|++|||||||+ +++.+.+. .+ .+|.+.++....+ .+++..+.+++|||+|+++|.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3456899999999999999999 56666666 42 3577888777666 678889999999999999999
Q ss_pred ccchhhccCCcEEEEEEeCC------ChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 163 DHVPIACKDAVAILFMFDLT------SRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 163 ~~~~~~~~~a~~iilvfdit------~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
.++..+++++|++|+|||++ +.++|+++..|+.+++.. ..++|++||+.
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~-~~~~piilv~N 143 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT-LDDVPIVIQVN 143 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC-TTSSCEEEEEE
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc-cCCCCEEEEEE
Confidence 99999999999999999999 778999999999998543 36788888753
No 77
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=8.7e-22 Score=156.87 Aligned_cols=112 Identities=11% Similarity=0.203 Sum_probs=98.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.|. .+.++.+.++ ...+.+++..+.+++||++|+++ ..++..+++++|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 45799999999999999999999999998 6667777665 46678889999999999999998 778889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
+|||+++++||+++..|++++.+.. ..++|++||+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 139 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEE
Confidence 9999999999999999999998764 3578887775
No 78
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.87 E-value=3e-22 Score=158.76 Aligned_cols=110 Identities=18% Similarity=0.305 Sum_probs=94.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.+|++.++.. +. ...+.+++||++|++++..++..+++++|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 45799999999999999999999999998 777888887652 33 33578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
+|||++++++|+.+..|+.++.+.. ..++|++||+
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 131 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG 131 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEE
Confidence 9999999999999999999887642 2578877765
No 79
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.87 E-value=7.8e-22 Score=158.18 Aligned_cols=111 Identities=15% Similarity=0.136 Sum_probs=87.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
...+||+++|++|||||||+++|.++++..+.+|.+.+. ..+.+++ +.+++|||+|++++..++..|++++|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 346899999999999999999999999887777887664 4666776 789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
|||+++++||+++..|+.++.+.. ..++|++||+.
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 134 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGN 134 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEE
Confidence 999999999999999999987653 35788877753
No 80
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=155.42 Aligned_cols=109 Identities=20% Similarity=0.265 Sum_probs=93.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCC-CC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNE-QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~-f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
..+||+++|++|||||||+++|.++. +. .+.+|.+. ....+.+++ +.+.+|||+|++++..++..+++++|+++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 46999999999999999999999988 55 66677774 345666664 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCC---CCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWNQ---VTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~~---~~~piIlVa 211 (215)
+|||+++++||+++..|+.++.+... .++|++||+
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~ 133 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFA 133 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEE
Confidence 99999999999999999999877543 468877765
No 81
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.87 E-value=1.1e-22 Score=160.81 Aligned_cols=111 Identities=13% Similarity=0.356 Sum_probs=87.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC--CCC-CccccceeeeEEEEEEE---CCeEEEEEEEecCCCCCCCccchhhccCCc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMV---QGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~--~f~-~~~~t~g~~~~~~~v~~---~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~ 173 (215)
.+||+++|++|||||||+++|++. .|. .+.+|+|.++..+.+.+ ++..+.+++|||+|+++|..+++.|+++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 565 56788899988776655 346789999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 174 AILFMFDLTSR-CTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 174 ~iilvfdit~~-~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++++|||++++ .||+++..|+.++.... .+.|++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~ 119 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVG 119 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEE
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEE
Confidence 99999999997 58999999999998775 578988884
No 82
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.87 E-value=2.9e-21 Score=147.78 Aligned_cols=112 Identities=12% Similarity=0.218 Sum_probs=98.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||++++.++.+. .+.++.+..+ ...+.+++..+.+.+||++|++++..++..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 4689999999999999999999999888 5556666444 5677788999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa 211 (215)
|||++++++|+++..|++++..... .+.|+++|.
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~ 115 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 9999999999999999999988653 468877765
No 83
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.87 E-value=8.7e-22 Score=154.98 Aligned_cols=110 Identities=17% Similarity=0.251 Sum_probs=94.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
...+||+++|++|||||||+++|.++++..+.+|.|.++ ..+.+++ +.+++||++|++++..++..+++++|++++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 346999999999999999999999999976677888654 4555655 789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
|||+++++||+++..|+.++.+.. ..++|++||+
T Consensus 95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 129 (181)
T 2h17_A 95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA 129 (181)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEE
Confidence 999999999999999999887643 3568877765
No 84
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.8e-21 Score=150.18 Aligned_cols=111 Identities=14% Similarity=0.245 Sum_probs=97.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+++|.++.+. .+.++.+.++. ..+..++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 689999999999999999999999988 66677776553 5567788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQ--VTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~--~~~piIlVa 211 (215)
||++++++|+++..|+.++.+... .+.|+++|+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~ 116 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG 116 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEE
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 999999999999999999887642 467877665
No 85
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.86 E-value=8e-22 Score=156.50 Aligned_cols=111 Identities=20% Similarity=0.280 Sum_probs=90.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCCC--ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQER--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~--~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ 174 (215)
....+||+++|++|||||||+++|+++.+.. +.+|+|..+. .+ ++..+.++||||+|++++..++..+++++|+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 89 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDA 89 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence 3457899999999999999999999999874 4678885543 33 3456889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhHCC--------CCceEEEEe
Q 028037 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQ--------VTKQSLFFH 211 (215)
Q Consensus 175 iilvfdit~~~Sf~~i~~wl~~i~~~~~--------~~~piIlVa 211 (215)
+|+|||+++++||+++..|+.++.+... .++|+|||+
T Consensus 90 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 134 (199)
T 4bas_A 90 VIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFA 134 (199)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEE
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEE
Confidence 9999999999999999999998866421 268877775
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.86 E-value=2.7e-21 Score=153.91 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=94.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
...+||+++|++|||||||+++|.++++..+.+|.+.+ ...+.+++ +++++|||+|++++..++..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 44689999999999999999999999988777787765 35667776 889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
|||+++++||+++..|+.++.+.. ..+.|++||+.
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 132 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGN 132 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEE
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEE
Confidence 999999999999999999987643 35688777753
No 87
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.86 E-value=6.6e-22 Score=159.89 Aligned_cols=116 Identities=22% Similarity=0.347 Sum_probs=100.9
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ 174 (215)
....+||+++|++|||||||+++|+++.+. .+.++.+.++....+..+ +..+.+.+|||+|++++..++..+++++|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 345799999999999999999999999988 666788877776666554 455999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 175 iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
+|+|||++++.||+++..|+.++......+.|++||+.
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 125 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN 125 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999999999999999999988777788877753
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.86 E-value=1e-21 Score=151.14 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=91.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd 180 (215)
+||+++|++|||||||+++|.++.|..+.+|.+... ..+.. ..+.+++|||+|++++..++..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE--EEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeE--EEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999999987778887443 34443 45789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhH-CCCCceEEEEe
Q 028037 181 LTSRCTLNSIVGWYSEARKW-NQVTKQSLFFH 211 (215)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa 211 (215)
+++++||+++..|+.++... ...+.|++||+
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 108 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAEDELRDAVLLVFA 108 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEE
Confidence 99999999999999998664 23578887775
No 89
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.86 E-value=4.4e-21 Score=153.46 Aligned_cols=114 Identities=23% Similarity=0.452 Sum_probs=102.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||++++.+..|. .+.++.|.++....+.++|..+.+++||++|++++..+...++++++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 3689999999999999999999999998 777888889888899999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|||+++..+|+++..|+.++......+.|+++|+.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~n 118 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 118 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 99999999999999999999877656788877654
No 90
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.86 E-value=2.1e-21 Score=155.02 Aligned_cols=113 Identities=21% Similarity=0.232 Sum_probs=87.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEE--E-CCeEEEEEEEecCCCCCCCccc---hhhcc
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLM--V-QGARIAFSIWDVGGDSRSFDHV---PIACK 170 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~--~-~~~~~~l~i~Dt~G~e~~~~~~---~~~~~ 170 (215)
....+||+++|++|||||||++++.+ .|... ++.+.++..+.+. + ++..+.+++|||+|+++|..+. ..+++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFH-KMSPN-ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHS-CCCGG-GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHh-cCCCc-ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 34579999999999999999997765 44422 4555554444333 3 3677899999999999998777 89999
Q ss_pred CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 171 DAVAILFMFDLTSR--CTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 171 ~a~~iilvfdit~~--~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
++|++|+|||++++ ++++.+..|+.++.+.. .++|++||+.
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~n 137 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIH 137 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEe
Confidence 99999999999998 78888888888886655 5789888763
No 91
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.86 E-value=3.8e-21 Score=148.69 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=94.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
..+||+++|++|||||||+++|.++.+..+.+|.+... ..+.++ .+.+++|||+|++++..++..+++++|++++|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 81 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV 81 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 36899999999999999999999999987778887554 455555 57899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
||+++++||+++..|+.++.+.. ..+.|++||+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 115 (171)
T 1upt_A 82 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFA 115 (171)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEE
Confidence 99999999999999998886643 2578877775
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3.4e-21 Score=152.17 Aligned_cols=110 Identities=17% Similarity=0.249 Sum_probs=91.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
..+||+++|++|||||||+++|.++++..+.+|.|.+. ..+.+++ +.+++|||+|++++..++..+++++|++++|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 46899999999999999999999999886677877554 4555654 8899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
||+++++||+++..|+.++.+.. ..+.|++||+.
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 125 (187)
T 1zj6_A 91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 125 (187)
T ss_dssp EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEE
Confidence 99999999999999999997753 25688777753
No 93
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=2.6e-21 Score=153.52 Aligned_cols=112 Identities=13% Similarity=0.207 Sum_probs=97.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
..+||+++|++|||||||+++|.++.+. .+.++.+..+. ..+..++..+.+.+|||+|++++..++..+++++|++++
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 4689999999999999999999999988 66677775553 566778889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWNQ--VTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~~--~~~piIlVa 211 (215)
|||++++++|+++..|+..+.+... .++|++||+
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~ 121 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 9999999999999999988877543 467877765
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.85 E-value=1.9e-21 Score=153.49 Aligned_cols=110 Identities=18% Similarity=0.269 Sum_probs=94.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
..+||+++|++|||||||+++|.++.+..+.+|.|.. .+.+.++ .+.+++|||+|++++..++..+++++|++++|
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 4699999999999999999999998776777788854 3455665 47899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhH-CCCCceEEEEee
Q 028037 179 FDLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFHI 212 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa~ 212 (215)
||+++++||+++..|+.++.+. ...+.|++||+.
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 125 (181)
T 1fzq_A 91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125 (181)
T ss_dssp EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEE
T ss_pred EECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 9999999999999999988654 235788877753
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.85 E-value=4.3e-21 Score=152.97 Aligned_cols=110 Identities=20% Similarity=0.293 Sum_probs=89.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
...+||+++|++|||||||+++|.+++|..+.+|.+.. ...+..+ .+.+++|||+|++++..++..+++++|++++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 45799999999999999999999999988767777744 3445544 4789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
|||+++++||+++..|+.++.+.. ..+.|++||+
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~ 137 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFA 137 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEE
Confidence 999999999999999999986543 3578887775
No 96
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.84 E-value=1.1e-20 Score=148.63 Aligned_cols=110 Identities=21% Similarity=0.289 Sum_probs=93.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
...+||+++|++|||||||+++|.+++...+.+|.+.+. ..+.++ .+.+++|||+|++++..++..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 347999999999999999999999988447778888553 455555 4789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
|||+++++||+++..|+.++.+.. ..+.|+++|+
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 126 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFA 126 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEE
Confidence 999999999999999999887643 3578877775
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.84 E-value=8.4e-21 Score=149.96 Aligned_cols=109 Identities=22% Similarity=0.309 Sum_probs=94.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
..+||+++|++|||||||+++|.++++..+.+|.+... ..+..+ .+.+++|||+|++++..++..+++++|++++|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 47899999999999999999999998887777877543 445555 47899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
||+++++||+++..|+.++.+.. ..+.|+++|+
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 130 (189)
T 2x77_A 97 VDSTDRDRMGVAKHELYALLDEDELRKSLLLIFA 130 (189)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEE
T ss_pred EeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEE
Confidence 99999999999999999887643 3578887775
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=1e-20 Score=148.17 Aligned_cols=110 Identities=21% Similarity=0.278 Sum_probs=91.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
...+||+++|++|||||||++++.++++..+.+|.+... ..+.+++ +.+++||++|++++..++..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 347999999999999999999999998876677887543 4555554 789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
|||+++++||+++..|+.++.+.. ..+.|+++|+
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 126 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFA 126 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEE
Confidence 999999999999999999987754 3678877775
No 99
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.83 E-value=6.8e-20 Score=156.54 Aligned_cols=110 Identities=22% Similarity=0.420 Sum_probs=98.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
.+||+++|++|||||||+++|+++.+. .+.+|++..+ ...+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 489999999999999999999999998 6666776554 56778899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037 179 FDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa 211 (215)
||++++.||+++. .|++.+..... ++|++||+
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~ 266 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVG 266 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEE
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEE
Confidence 9999999999997 79999988764 78877765
No 100
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.83 E-value=2.6e-21 Score=161.68 Aligned_cols=115 Identities=11% Similarity=0.121 Sum_probs=89.6
Q ss_pred ceeeeEEEEcCC---------CCCHHHHHHHHhc---CCCC-Cccccc-eeeeEEEEEE--------------ECCeEEE
Q 028037 98 LVSLKISLLGDC---------QIGKTSFVVKYVG---NEQE-RSLQMA-GLNLINKTLM--------------VQGARIA 149 (215)
Q Consensus 98 ~~~~KIvllGd~---------~vGKTSLi~r~~~---~~f~-~~~~t~-g~~~~~~~v~--------------~~~~~~~ 149 (215)
...+||+++|++ |||||||+++|++ +.|. .+.+++ +.++..+.+. +++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 346999999999 9999999999999 5666 566665 5665544333 4678899
Q ss_pred EEEEe-----------------------cCCCCCCCccchhhcc---------------------CCcEEEEEEeCCCh-
Q 028037 150 FSIWD-----------------------VGGDSRSFDHVPIACK---------------------DAVAILFMFDLTSR- 184 (215)
Q Consensus 150 l~i~D-----------------------t~G~e~~~~~~~~~~~---------------------~a~~iilvfdit~~- 184 (215)
++||| ++|+++|..++..+|+ ++|++|+|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 8899999999999998 89999999999999
Q ss_pred -hhHHHHHHHHHHHHhH-CCCCceEEEEee
Q 028037 185 -CTLNSIVGWYSEARKW-NQVTKQSLFFHI 212 (215)
Q Consensus 185 -~Sf~~i~~wl~~i~~~-~~~~~piIlVa~ 212 (215)
+||+++..|+.++.+. ...++|++||+.
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~N 206 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLT 206 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence 9999999999999876 345788887763
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.83 E-value=1.6e-20 Score=162.51 Aligned_cols=104 Identities=16% Similarity=0.160 Sum_probs=82.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC----ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc---cchhhccCCcE
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---HVPIACKDAVA 174 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~----~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~---~~~~~~~~a~~ 174 (215)
||+++|++|||||||++++.++.+.. +.+|+|.++.. ++ ..++++||||+|||+|.. .++.||+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999988765543 45788888753 23 458999999999999974 46899999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 175 ILFMFDLTSR--CTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 175 iilvfdit~~--~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|+|||++++ ++++.+..|++++.+.. +++|++||+
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvg 113 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLI 113 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEEC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEE
Confidence 9999999998 44444445566666654 578988775
No 102
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.72 E-value=4.5e-22 Score=159.51 Aligned_cols=112 Identities=21% Similarity=0.422 Sum_probs=97.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+++|||+|++++..++..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 45799999999999999999999999988 6666766544 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++++||+++. .|+..+....+ ++|++||+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~ 141 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVG 141 (204)
Confidence 999999999999997 89999987653 67877664
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.81 E-value=8.3e-20 Score=147.08 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=87.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCe-EEEEEEEecCCCCCCCc-cchhhccCCcEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGA-RIAFSIWDVGGDSRSFD-HVPIACKDAVAI 175 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~-~~~l~i~Dt~G~e~~~~-~~~~~~~~a~~i 175 (215)
...+||+++|++|||||||+++|+++.|...+++++.++.. +.+++. .+.++||||+|+++|.. ++..|++++|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 34789999999999999999999999998555666666653 566654 68999999999999987 888999999999
Q ss_pred EEEEeCCChh-hHHHHHH-HHHHHHhH--CCCCceEEEEe
Q 028037 176 LFMFDLTSRC-TLNSIVG-WYSEARKW--NQVTKQSLFFH 211 (215)
Q Consensus 176 ilvfdit~~~-Sf~~i~~-wl~~i~~~--~~~~~piIlVa 211 (215)
|+|||+++.+ ++..+.. |.+.+... ...++|++||+
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 122 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC 122 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEE
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEE
Confidence 9999999964 5777665 44444442 34578887775
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=1.7e-19 Score=163.65 Aligned_cols=112 Identities=19% Similarity=0.261 Sum_probs=96.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
....+||+++|+++||||||+++|.++++..+.+|.+.++. .+.. ..+.+.||||+|+++|..++..+++++|++|
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEE--EEEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 34579999999999999999999999998877788887754 3333 4478999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037 177 FMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI 212 (215)
Q Consensus 177 lvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~ 212 (215)
+|||++++++|+++..|+.++.+.. ..++|+|||+.
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~N 431 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 431 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEE
Confidence 9999999999999999999986643 25789877754
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=156.96 Aligned_cols=110 Identities=21% Similarity=0.279 Sum_probs=88.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
...+||+++|++|||||||+++|.++.|....+|++.++. .+.. ..++++||||+|+++|..++..+++++|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 3578999999999999999999999998866678887654 3333 34789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
|||++++++|+.+..|+.++.+.. ..++|+|||+
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~ 273 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA 273 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEE
Confidence 999999999999998887775533 3578888775
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.80 E-value=2.8e-19 Score=153.36 Aligned_cols=109 Identities=19% Similarity=0.283 Sum_probs=89.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC--CCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC-----Cccchhhcc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN--EQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIACK 170 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~--~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~-----~~~~~~~~~ 170 (215)
.+||+++|++|||||||+++|+++ .+. .+.+|++.++.. +.+++ .+.+++|||+|++++ ..++..+++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 689999999999999999999988 343 244577777653 44444 689999999999998 788999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHH---HhHCCCCceEEEEee
Q 028037 171 DAVAILFMFDLTSRCTLNSIVGWYSEA---RKWNQVTKQSLFFHI 212 (215)
Q Consensus 171 ~a~~iilvfdit~~~Sf~~i~~wl~~i---~~~~~~~~piIlVa~ 212 (215)
++|++|+|||+++++||+++..|.+.+ .... +++|++||+.
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~-~~~piilv~N 123 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS-PDAKIFVLLH 123 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHC-TTCEEEEEEE
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhC-CCCeEEEEEe
Confidence 999999999999999999998775555 4443 5789888764
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.77 E-value=2.2e-18 Score=134.06 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=84.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii 176 (215)
...+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++. .+.+|||+|+++|..++..++..+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 34789999999999999999999999988 66667776776677777775 5679999999999999999999999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 177 FMFDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 177 lvfdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|||+++ .++++.+ ..+ ...++|++||+
T Consensus 84 ~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~ 114 (178)
T 2lkc_A 84 LVVAADDGVMPQTVEAI----NHA---KAANVPIIVAI 114 (178)
T ss_dssp EEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEE
T ss_pred EEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEE
Confidence 9999999 4444433 222 22467777665
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.77 E-value=5.6e-18 Score=131.47 Aligned_cols=105 Identities=13% Similarity=0.074 Sum_probs=79.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc------cchhhcc-
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIACK- 170 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~------~~~~~~~- 170 (215)
..+||+++|++|||||||+++|.+..+. .+.++++.+.....+.+++ ..+++|||+|++++.. +...|++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 3689999999999999999999998876 6666666666666677765 5799999999998863 4466775
Q ss_pred -CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 171 -DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 171 -~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++|++++|||.++.+ +...|+.++.+. +.|+++|+
T Consensus 80 ~~~~~~i~v~D~~~~~---~~~~~~~~~~~~---~~p~ilv~ 115 (165)
T 2wji_A 80 EKPDLVVNIVDATALE---RNLYLTLQLMEM---GANLLLAL 115 (165)
T ss_dssp HCCSEEEEEEETTCHH---HHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCCEEEEEecCCchh---HhHHHHHHHHhc---CCCEEEEE
Confidence 899999999999855 445688887653 57777664
No 109
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.77 E-value=2.6e-18 Score=134.57 Aligned_cols=109 Identities=18% Similarity=0.244 Sum_probs=87.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc--------hhhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC 169 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~--------~~~~ 169 (215)
.+||+++|++|||||||+++|.+..+. ...+++..++....+.+++. .+.+|||+|++++.... ..++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 579999999999999999999988753 44455566777778888874 47899999998754321 2468
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 170 ~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+++|++++|||++++.||+ ...|++++.+....++|++||+
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~ 122 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVR 122 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEE
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEE
Confidence 9999999999999999987 4589998888776678877765
No 110
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=1.4e-18 Score=140.16 Aligned_cols=105 Identities=14% Similarity=0.125 Sum_probs=87.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCC----ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccC--
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD-- 171 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~----~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~-- 171 (215)
...+||+++|++|||||||+++|.++.+.. +.++++.++ ..+.+.+|||+|++++...+..|+++
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 346899999999999999999999988763 333444333 45679999999999999999999887
Q ss_pred --CcEEEEEEeCC-ChhhHHHHHHHHHHHHhH----CCCCceEEEEe
Q 028037 172 --AVAILFMFDLT-SRCTLNSIVGWYSEARKW----NQVTKQSLFFH 211 (215)
Q Consensus 172 --a~~iilvfdit-~~~Sf~~i~~wl~~i~~~----~~~~~piIlVa 211 (215)
+|++|+|||++ ++++|+.+..|+.++... ...++|++||.
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 127 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEE
Confidence 89999999999 999999999999988765 34678877765
No 111
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.8e-18 Score=135.60 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=82.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCc----cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccC--
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERS----LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD-- 171 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~----~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~-- 171 (215)
...+||+++|++|||||||++++.++.+... .++.+.+ ...+.+.+|||+|++.+...+..++.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C---------CCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee---------ecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 3468999999999999999999999887532 2222222 245678999999999999888888876
Q ss_pred --CcEEEEEEeCC-ChhhHHHHHHHHHHHHhH----CCCCceEEEEe
Q 028037 172 --AVAILFMFDLT-SRCTLNSIVGWYSEARKW----NQVTKQSLFFH 211 (215)
Q Consensus 172 --a~~iilvfdit-~~~Sf~~i~~wl~~i~~~----~~~~~piIlVa 211 (215)
+|++++|||++ +.++|+++..|+.++... ...++|++||+
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 163 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEE
Confidence 89999999999 999999999999888654 33578887775
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=1.8e-17 Score=130.31 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=85.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC------ccchhhc
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIAC 169 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~------~~~~~~~ 169 (215)
.+..+||+++|++|||||||+++|.++.+. .+.+++..+.....+..++ ..+++|||+|++++. .+...|+
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 346799999999999999999999998776 6667666677667777765 679999999999885 3456666
Q ss_pred c--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 170 K--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 170 ~--~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
. .++++++|+|.++ +++...|+.++.. .+.|+++|.
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~ 119 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLAL 119 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEE
T ss_pred hccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEE
Confidence 5 4999999999875 6677889988876 357777664
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.71 E-value=2.2e-18 Score=157.98 Aligned_cols=114 Identities=21% Similarity=0.371 Sum_probs=87.8
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEE------EEE--CCeEEEEEEEecCCCCCCCccch
Q 028037 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKT------LMV--QGARIAFSIWDVGGDSRSFDHVP 166 (215)
Q Consensus 96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~------v~~--~~~~~~l~i~Dt~G~e~~~~~~~ 166 (215)
.....+||+++|++|||||||++++.++.|. .+.+|+|.++..+. +.+ ++..+.+.+||++|++.|..+..
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3466899999999999999999999999998 77789998887552 222 34568999999999999999999
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~ 213 (215)
.+++++|++|+|||+++. +.+..|+.++..+. .+.|+|||+..
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK 159 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNK 159 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECC
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 999999999999998764 66788999999887 46888887643
No 114
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.69 E-value=1.1e-16 Score=130.65 Aligned_cols=110 Identities=18% Similarity=0.200 Sum_probs=75.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC---------ccchhh
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF---------DHVPIA 168 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~---------~~~~~~ 168 (215)
..+||+++|++|||||||+++|+++.+. ...+....++....+..++ ..+.||||+|+.... .....+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 105 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITAL 105 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence 4689999999999999999999999886 3333222333333333343 679999999994311 112345
Q ss_pred ccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEe
Q 028037 169 CKDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 169 ~~~a~~iilvfdit~~~Sf~~--i~~wl~~i~~~~~~~~piIlVa 211 (215)
+..+|++|+|||++++.||+. ...|+.++.... .+.|++||+
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~ 149 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGF 149 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEE
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEE
Confidence 788999999999999999863 236777776543 467877764
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.68 E-value=1.5e-16 Score=121.41 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=72.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC-------CccchhhccC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------FDHVPIACKD 171 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~-------~~~~~~~~~~ 171 (215)
.||+++|++|||||||+++|.++.+. ...++...++....+..++. .+.+|||+|++.+ ......++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999998764 34445555666667777664 6889999999874 3344567899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|++++|||.++..++.. .|+.++.+. .+.|+++|+
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~ 115 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVA 115 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEE
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEE
Confidence 999999999999755432 333222222 357776665
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.67 E-value=1.4e-17 Score=130.80 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=81.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCC-----------CCCCCccchhh
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVPIA 168 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G-----------~e~~~~~~~~~ 168 (215)
+||+++|++|||||||+++|.++.|. .+.+++..+. ..+..+ .+.+|||+| ++.+..++..|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999988 5555444333 334443 689999999 66677778888
Q ss_pred ccC-CcEEEEEEeCCChhhHHHH-HHHHHH--------HHh-HCCCCceEEEEe
Q 028037 169 CKD-AVAILFMFDLTSRCTLNSI-VGWYSE--------ARK-WNQVTKQSLFFH 211 (215)
Q Consensus 169 ~~~-a~~iilvfdit~~~Sf~~i-~~wl~~--------i~~-~~~~~~piIlVa 211 (215)
+++ ++++++||+++|.+||+++ ..|..+ +.+ ....++|+++|+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 129 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAV 129 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEE
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEe
Confidence 888 9999999999999999998 678763 222 223568877765
No 117
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.66 E-value=7.8e-17 Score=127.29 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=72.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCC----------CCCCCccchh
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPI 167 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G----------~e~~~~~~~~ 167 (215)
..+||+++|++|||||||+++|+++.|. .+.++.+.+.......+++ ++.+|||+| ++.+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 4689999999999999999999999876 5555665554444445544 589999999 6777777888
Q ss_pred hccCC---cEEEEEEeCCChhhHHHHH--HHHHHHHhHCCCCceEEEEe
Q 028037 168 ACKDA---VAILFMFDLTSRCTLNSIV--GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 168 ~~~~a---~~iilvfdit~~~Sf~~i~--~wl~~i~~~~~~~~piIlVa 211 (215)
+++.+ |++++|||+++..++.... .|+.+ .+.|+++|.
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~ 141 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY------YGIPVIVIA 141 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEE
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEE
Confidence 88877 9999999999998888754 44432 456766664
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.63 E-value=3.6e-15 Score=124.83 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=80.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc------chhhc-
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIAC- 169 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~------~~~~~- 169 (215)
...+||+++|++|||||||+++|.+..+. ...+.+..+.....+..+ ...+.+|||+|++.+... ...|+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 34789999999999999999999998876 555655555444444444 378999999999988763 35665
Q ss_pred -cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 170 -KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 170 -~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
.++|++++|||.++.++. ..|..++.+. ++|+++|..
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~N 118 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMT 118 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEE
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEE
Confidence 589999999999997654 3477776653 578777654
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.62 E-value=1.6e-15 Score=127.00 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=82.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc----------cchhhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----------HVPIAC 169 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~----------~~~~~~ 169 (215)
.||+++|++|||||||+++|.+..+. ...+++..+.....+..++. .+.+|||+|+..+.. +...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998776 66677777777777777765 789999999988764 556677
Q ss_pred --cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 170 --KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 170 --~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
.++|++++|+|.++.+++..+..|+.+ .++|+++|..
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~------~~~pvilv~N 118 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLFE------LGKPVVVALN 118 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHTT------SCSCEEEEEE
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHHH------cCCCEEEEEE
Confidence 899999999999998777666555433 3578777654
No 120
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.60 E-value=2.5e-15 Score=128.82 Aligned_cols=110 Identities=13% Similarity=0.109 Sum_probs=82.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCC--ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC----------ccc
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----------DHV 165 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~--~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~----------~~~ 165 (215)
...-.|+++|.+|||||||++++++..+.. ..+.+..+.....+..+ ...++.+|||+|+.++. ...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 346799999999999999999999988762 22212122222222332 25789999999998765 455
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
..+++++|++++|+|.++..++++...|++.+... ++|+++|.
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~ 129 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVI 129 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEE
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEE
Confidence 67789999999999999999999999999998773 46766654
No 121
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.60 E-value=1.5e-15 Score=127.02 Aligned_cols=110 Identities=17% Similarity=0.172 Sum_probs=81.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhcc------
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK------ 170 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~------ 170 (215)
..+||+++|+.|||||||+++|++..+. ...+.+........+..++ ..+.||||+|++++......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4799999999999999999999998863 3333333344444455555 47999999999998877666664
Q ss_pred ---CCcEEEEEEeCCChhhHHHH-HHHHHHHHhHCCCC--ceEEEEe
Q 028037 171 ---DAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQVT--KQSLFFH 211 (215)
Q Consensus 171 ---~a~~iilvfdit~~~Sf~~i-~~wl~~i~~~~~~~--~piIlVa 211 (215)
++|++++|+|+++.. |... ..|++.+.+..+.+ .|+++|.
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 158 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVL 158 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEE
Confidence 889999999998765 5555 48888888765443 3665553
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.60 E-value=4.9e-15 Score=124.97 Aligned_cols=106 Identities=14% Similarity=0.062 Sum_probs=79.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc----------chh
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPI 167 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~----------~~~ 167 (215)
..+||+++|.+|||||||+++|.+..+. .+.+++..+.....+..++ ..+.+|||+|+..+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 4689999999999999999999998876 6666666666666666655 45788999999987732 233
Q ss_pred hc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 168 AC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 168 ~~--~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
|+ .++|++++|+|.++.+++..+..|+.+. ++|+++|..
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~N 120 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALN 120 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEE
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEE
Confidence 33 6999999999999977665555554443 577777653
No 123
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.60 E-value=2.3e-15 Score=118.29 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=76.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCC----------CCCCCccchh
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPI 167 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G----------~e~~~~~~~~ 167 (215)
...+||+++|++|||||||+++|+++.+..+.++.+.+........+. ++.+|||+| ++.+..+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 346899999999999999999999998665556665554433333332 477999999 6667777788
Q ss_pred hccCC---cEEEEEEeCCChhh--HHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 168 ACKDA---VAILFMFDLTSRCT--LNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 168 ~~~~a---~~iilvfdit~~~S--f~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+++.+ +++++|+|.++..+ +..+..|+.+. ++|+++|.
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~ 140 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVL 140 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEE
Confidence 88776 99999999988644 34444666543 57777664
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.59 E-value=3.2e-15 Score=126.22 Aligned_cols=104 Identities=18% Similarity=0.071 Sum_probs=78.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC------ccchhhcc--
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK-- 170 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~------~~~~~~~~-- 170 (215)
.+||+++|++|||||||+++|.+..+. ...+.+ ++..+...++. ...+++|||+|++.+. .+...|+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~--tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGV--TVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCC--CCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCC--cEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 579999999999999999999987654 555533 33334445555 6789999999999886 35567775
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
++|++++|||.++.+++ ..|..++.+ .++|+++|..
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~N 115 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALN 115 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEE
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEE
Confidence 69999999999987654 457766665 3578777654
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.57 E-value=1.8e-14 Score=120.95 Aligned_cols=107 Identities=16% Similarity=0.083 Sum_probs=83.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc------cchhhc--
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC-- 169 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~------~~~~~~-- 169 (215)
..+||+++|++|||||||++++.+..+. ...++++.+.....+..++. .+.+|||+|+..+.. +...|+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 4689999999999999999999998886 66677777777777777664 489999999998876 566666
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI 212 (215)
Q Consensus 170 ~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~ 212 (215)
.++|++++|+|.++.+ ....|..++.... ..|+++|..
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~N 117 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLN 117 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEE
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEE
Confidence 6899999999999863 3445555555432 277776643
No 126
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.56 E-value=1.8e-14 Score=123.32 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=76.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccc-cceeeeEEEEEEECCeEEEEEEEecCCCCCC--------Cccch
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVP 166 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~--------~~~~~ 166 (215)
....+|+++|.+|||||||+++|++..+. ...+ |+. +.....+. ....++.+|||+|+.+. .....
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr-~~i~~i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~ 81 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR-KRLRGILT--EGRRQIVFVDTPGLHKPMDALGEFMDQEVY 81 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEE--ETTEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee-EEEEEEEE--eCCcEEEEecCccccchhhHHHHHHHHHHH
Confidence 45678999999999999999999998875 2222 332 22112222 23578999999999874 34456
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHH-HHHHhHCCCCceEEEEe
Q 028037 167 IACKDAVAILFMFDLTSRCTLNSIVGWY-SEARKWNQVTKQSLFFH 211 (215)
Q Consensus 167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl-~~i~~~~~~~~piIlVa 211 (215)
.+++++|++++|||.+++.+.. ..|+ +.+++.. .+.|+++|.
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~ 124 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVG 124 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEE
T ss_pred HHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEE
Confidence 7789999999999999876544 4554 5666553 457766654
No 127
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.56 E-value=7.5e-15 Score=123.19 Aligned_cols=112 Identities=14% Similarity=0.061 Sum_probs=77.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchh---------hc
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI---------AC 169 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~---------~~ 169 (215)
..+||+++|++|+|||||++++++..+....++.+.......+.++.....+.||||+|++++..+... .+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 479999999999999999999998886422222222222233333334578999999999887654332 13
Q ss_pred cCCcEEEEEEeCCChhhHHHH-HHHHHHHHhHCCCC--ceEEEEe
Q 028037 170 KDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQVT--KQSLFFH 211 (215)
Q Consensus 170 ~~a~~iilvfdit~~~Sf~~i-~~wl~~i~~~~~~~--~piIlVa 211 (215)
+++|++++|||++.. +|... ..|++.+.+..+.+ .|+++|.
T Consensus 118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~ 161 (270)
T 1h65_A 118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVAL 161 (270)
T ss_dssp CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEE
Confidence 479999999999764 46554 48888887765433 5665553
No 128
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.55 E-value=1.5e-14 Score=120.09 Aligned_cols=110 Identities=11% Similarity=0.056 Sum_probs=68.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-Ccccccee--eeEEEEEEECCeEEEEEEEecCCC--------CCCCccchh
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGL--NLINKTLMVQGARIAFSIWDVGGD--------SRSFDHVPI 167 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~--~~~~~~v~~~~~~~~l~i~Dt~G~--------e~~~~~~~~ 167 (215)
..+||+++|.+|||||||++++++..+. ....+.+. +.....+..++ ..+.||||+|. +++......
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 4799999999999999999999988765 33333222 22233444444 56899999997 444333333
Q ss_pred hc----cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC---CCceEEEEee
Q 028037 168 AC----KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ---VTKQSLFFHI 212 (215)
Q Consensus 168 ~~----~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~---~~~piIlVa~ 212 (215)
++ +++|++|+|+|+++... .-..+++.+.+..+ .+.|+||+..
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~iilv~n 147 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTA--QDQQAVRQVRDMFGEDVLKWMVIVFTR 147 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCH--HHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred HHHhcCCCCCEEEEEEeCCCCCH--HHHHHHHHHHHHhChhhhccEEEEEEc
Confidence 33 89999999999985321 11233444433222 2578777653
No 129
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.55 E-value=8.7e-15 Score=132.62 Aligned_cols=108 Identities=14% Similarity=0.218 Sum_probs=63.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCC--CCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc--------hhhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC 169 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f--~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~--------~~~~ 169 (215)
.+||+++|++|||||||+++|.+.+. ....+++..++....+.+++ +.+.+|||+|++++.... ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 58999999999999999999998864 35556666677777777876 569999999998866443 4478
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 170 ~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+++|++++|||.+++.+++++..|.+.+.... +.|+++|.
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~ 350 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVA 350 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEE
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEE
Confidence 99999999999999999875444433333322 57876654
No 130
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.55 E-value=4.8e-14 Score=117.11 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=73.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCC-CC-Ccccc-ceeeeEEEEEEECCeEEEEEEEecCCCCCCCccch--------
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNE-QE-RSLQM-AGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP-------- 166 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~-f~-~~~~t-~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~-------- 166 (215)
...+||+++|.+|||||||++++++.. +. ...++ +..+.....+..++ ..+.||||+|+..+.....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 446899999999999999999999887 54 33333 34444444555555 5689999999877643322
Q ss_pred ---hhccCCcEEEEEEeCCChhhH-HHHHHHHHHHHhHCCCCceEEEEe
Q 028037 167 ---IACKDAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 167 ---~~~~~a~~iilvfdit~~~Sf-~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
.+++++|++|+|||.++.... ..+..|+.++........++++++
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~ 146 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFT 146 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEE
Confidence 267899999999999962222 223344444322111234566666
No 131
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.54 E-value=8.2e-15 Score=120.47 Aligned_cols=110 Identities=12% Similarity=0.056 Sum_probs=71.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEEECCeEEEEEEEecCCCCC-----------CCc
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSR-----------SFD 163 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~-----------~~~ 163 (215)
...+||+++|++|||||||++++++..+. ...+ ++..++....+.+++ ..+.||||+|... +..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 45799999999999999999999998876 4444 344455555666665 4689999999542 333
Q ss_pred cchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037 164 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--VTKQSLFFH 211 (215)
Q Consensus 164 ~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~--~~~piIlVa 211 (215)
....+++++|++|+|+|+++..+ ....|+..+.+..+ ...|++||.
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~ 152 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIF 152 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEE
T ss_pred HHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEE
Confidence 44555678899999999986544 22344444433211 224655553
No 132
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.53 E-value=8.2e-15 Score=128.18 Aligned_cols=66 Identities=12% Similarity=0.185 Sum_probs=57.7
Q ss_pred eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit----------~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
..++++||||+||++|+.++..||++++++|+|||++ +.++|+++..|++++.+.. ..++|+|||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvg 257 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 257 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEE
Confidence 6799999999999999999999999999999999999 8899999999999997643 2678988876
No 133
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.53 E-value=1.7e-14 Score=125.35 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=59.0
Q ss_pred eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit----------~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
..++++|||++||++++.+|..||++++++|+|||++ +.++|++...|+.++.... ..++|+||++
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~ 235 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFL 235 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEE
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEE
Confidence 3588999999999999999999999999999999999 8899999999999987653 3678988876
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.53 E-value=6.9e-15 Score=131.64 Aligned_cols=107 Identities=15% Similarity=0.169 Sum_probs=77.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCC----------CCCCccch
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD----------SRSFDHVP 166 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~----------e~~~~~~~ 166 (215)
..+||+++|++|||||||+++++++++. ...+++..+.....+..++. .++||||+|+ |+|..+..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence 4689999999999999999999998874 44555556666667777775 4899999998 33433333
Q ss_pred -hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 167 -IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 167 -~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
.+++.+|++++|||.++..++++. .|+..+.. .+.|+++|.
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~ 293 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVV 293 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEE
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEE
Confidence 478899999999999999999886 58877765 346766654
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.52 E-value=2.9e-14 Score=127.73 Aligned_cols=103 Identities=16% Similarity=0.230 Sum_probs=69.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC---------Cccchhhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS---------FDHVPIAC 169 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~---------~~~~~~~~ 169 (215)
-+|+++|.++||||||+++|+++++. ...+.+..+.....+.+++. .+++|||+|++.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999988753 44555555666677777775 4789999998863 23456688
Q ss_pred cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEe
Q 028037 170 KDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 170 ~~a~~iilvfdit~~~Sf~~--i~~wl~~i~~~~~~~~piIlVa 211 (215)
+++|++|+|||.++..++.. +..|+.+ .+.|++||+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~ 117 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVA 117 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEE
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEE
Confidence 99999999999998766543 3344432 246766554
No 136
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.52 E-value=6e-15 Score=119.06 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=72.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCC----------CCCccch
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDS----------RSFDHVP 166 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e----------~~~~~~~ 166 (215)
..+||+++|++|||||||+++|+++.+. ....+.+.........+. .....+.||||+|.. .+..+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 4689999999999999999999998742 222222222222233343 345679999999953 3345556
Q ss_pred hhccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 167 IACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 167 ~~~~~---a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
.|++. +|++++|+|.++..+. .-..|++.+.+ .++|+++|.
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~ 151 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLL 151 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEE
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEE
Confidence 67666 7789999999986442 23456666655 346766654
No 137
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.49 E-value=2.8e-14 Score=127.51 Aligned_cols=108 Identities=12% Similarity=0.019 Sum_probs=74.6
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc-------hh
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------PI 167 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~-------~~ 167 (215)
....+||+++|+.++|||||+++|.+..+. ...+.+..+...+.+.+++. ..+.+|||+|++.+..+. ..
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 344789999999999999999999998874 33444445566666777654 378999999999887653 44
Q ss_pred hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 168 ~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++.++|++|+|||.+..+ ....|+.++++. ++|+++|.
T Consensus 110 ~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~ 147 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVV 147 (423)
T ss_dssp HHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEEC
T ss_pred HHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEE
Confidence 788999999999994333 346777777665 57766654
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.48 E-value=1.7e-14 Score=129.11 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=67.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCC--------CCCccchhhccC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS--------RSFDHVPIACKD 171 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e--------~~~~~~~~~~~~ 171 (215)
..||+++|.+|||||||+++|.+..+....++.|.........+.....++.+|||+|++ ++......++++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 469999999999999999999988775333344443222223333334579999999986 455566778999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+|++|+|+|.++..++.. .|+.++.+ ..+.|++||+
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~ 118 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAV 118 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEE
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEE
Confidence 999999999999877654 34433322 2457777664
No 139
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.48 E-value=3e-13 Score=117.05 Aligned_cols=70 Identities=14% Similarity=0.289 Sum_probs=58.5
Q ss_pred EEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhHC-CCCceEE
Q 028037 140 TLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKWN-QVTKQSL 208 (215)
Q Consensus 140 ~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit----------~~~Sf~~i~~wl~~i~~~~-~~~~piI 208 (215)
.+.++ .++++|||++||++++.+|..||++++++|+|||++ +.++|++...|++++.... ..++|++
T Consensus 161 ~~~~~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ii 238 (327)
T 3ohm_A 161 PFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 238 (327)
T ss_dssp EEEET--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred EEEee--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEE
Confidence 44444 488999999999999999999999999999999665 7888998888998887643 2678988
Q ss_pred EEe
Q 028037 209 FFH 211 (215)
Q Consensus 209 lVa 211 (215)
|++
T Consensus 239 L~~ 241 (327)
T 3ohm_A 239 LFL 241 (327)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 140
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.47 E-value=5.9e-14 Score=122.21 Aligned_cols=108 Identities=13% Similarity=0.193 Sum_probs=81.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEEECCeEEEEEEEecCCC----CCCCccchhhccC--
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGD----SRSFDHVPIACKD-- 171 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v~~~~~~~~l~i~Dt~G~----e~~~~~~~~~~~~-- 171 (215)
.+|+|+|.++||||||++++.+..+. ..++ |...++ ..+.+++ ...+.|||++|+ +++..+...|++.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~--g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE--EEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 36889999999999999999987654 3333 333332 3455543 247899999995 4566676777654
Q ss_pred -CcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037 172 -AVAILFMFDLTS---RCTLNSIVGWYSEARKWNQ--VTKQSLFFH 211 (215)
Q Consensus 172 -a~~iilvfdit~---~~Sf~~i~~wl~~i~~~~~--~~~piIlVa 211 (215)
++++|+|||+++ +++++++..|++++..+.. .+.|++||+
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~ 281 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 281 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEE
T ss_pred hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEE
Confidence 999999999999 8999999999999998763 467766654
No 141
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.46 E-value=5.4e-13 Score=116.34 Aligned_cols=110 Identities=14% Similarity=0.143 Sum_probs=80.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc---------cchhh
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIA 168 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~---------~~~~~ 168 (215)
..++|+++|.+|||||||++++.+..+. ...+....+.....+..+ ...+.+|||+|...+.. ....+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 3579999999999999999999988764 333322222222333333 36799999999876421 11234
Q ss_pred ccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 169 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 169 ~~~a~~iilvfdit~~~--Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
...+|++++|+|+++.. ++++...|+.++....+ +.|+++|.
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~ 287 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVI 287 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEE
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 45799999999999988 88999999999988664 67877765
No 142
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.46 E-value=1.8e-13 Score=119.62 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=60.4
Q ss_pred EEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhHC-CCCceEE
Q 028037 140 TLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKWN-QVTKQSL 208 (215)
Q Consensus 140 ~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~----------~~Sf~~i~~wl~~i~~~~-~~~~piI 208 (215)
.+.++ .+.++||||+||+.++.+|..||++++++|+|||+++ .++|++...|++++..+. -.++|+|
T Consensus 187 ~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii 264 (353)
T 1cip_A 187 HFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 264 (353)
T ss_dssp EEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred EEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE
Confidence 34444 5889999999999999999999999999999999999 567999999999987643 2578988
Q ss_pred EEee
Q 028037 209 FFHI 212 (215)
Q Consensus 209 lVa~ 212 (215)
||+.
T Consensus 265 Lv~N 268 (353)
T 1cip_A 265 LFLN 268 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8763
No 143
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.45 E-value=1.9e-14 Score=129.50 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=73.8
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCC--------CCCCCccchhh
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG--------DSRSFDHVPIA 168 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G--------~e~~~~~~~~~ 168 (215)
.+...+|+++|.+|||||||++++.+..+....++.|.+.......++.....+++|||+| ++++......+
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 3456799999999999999999999987763334555555444555555556899999999 55666777888
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 169 ~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++++|++|+|+|..+.-+ ....|+.++.+. .+.|++||+
T Consensus 100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~ 138 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAV 138 (456)
T ss_dssp HHHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEE
T ss_pred HhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEE
Confidence 999999999999876433 444454444332 467776664
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.44 E-value=4.5e-13 Score=117.50 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=76.0
Q ss_pred eee-EEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC---------CCccchhh
Q 028037 100 SLK-ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR---------SFDHVPIA 168 (215)
Q Consensus 100 ~~K-IvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~---------~~~~~~~~ 168 (215)
.++ |+++|.+|||||||++++.+..+. ...+....+.....+.+++ ..+.+|||+|.-. |... ...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHH
Confidence 456 999999999999999999988775 3333333455567788887 4578999999632 1112 224
Q ss_pred ccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 169 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 169 ~~~a~~iilvfdit~~~--Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
+..+|++++|+|++++. +++.+..|.+.+......+.|+|+|.
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~ 299 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL 299 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEE
Confidence 68999999999999987 77778788877777655667866654
No 145
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.43 E-value=2e-13 Score=122.78 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=77.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCC-C-CccccceeeeEEEEEEECCeEEEEEEEecCC----------CCCCCccc
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHV 165 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f-~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G----------~e~~~~~~ 165 (215)
...+||+++|+++||||||+++|.+.+. . ...+++..+.....+..++. +++||||+| +|+|..+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 3468999999999999999999997763 2 55566666766677777775 789999999 67776666
Q ss_pred hh-hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 166 PI-ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 166 ~~-~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
.. +++.+|++|+|+|.++..+. .-..|...+.+ .+.|+|||.
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~ 313 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVV 313 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEE
Confidence 54 77899999999999986442 33456666655 347766554
No 146
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.43 E-value=4.1e-13 Score=112.87 Aligned_cols=109 Identities=7% Similarity=0.111 Sum_probs=69.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCC-CC-Cc-------cccceeeeEEEEEEECCeEEEEEEEecCCCCCC-------C
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNE-QE-RS-------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------F 162 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~-f~-~~-------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~-------~ 162 (215)
..+||+++|.+|+|||||++++++.. +. ++ .+|++.++....+..++..+.+.||||+|.... .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 47999999999999999999976554 44 43 567777877777777777789999999998432 2
Q ss_pred ccc-------hhhcc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 163 DHV-------PIACK-------------DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 163 ~~~-------~~~~~-------------~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
.+. ..|+. .+|+++++.+.++..-...-..|++.+.. ++|+|+|.
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~ 151 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLI 151 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEE
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEE
Confidence 222 33333 26788888877663322222456666654 57776654
No 147
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.42 E-value=1.5e-13 Score=124.75 Aligned_cols=105 Identities=18% Similarity=0.325 Sum_probs=79.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCC--CCccccceeeeEEEEEEECCeEEEEEEEecCCCC-CCCc--------cchhh
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-RSFD--------HVPIA 168 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f--~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e-~~~~--------~~~~~ 168 (215)
.+||+++|.+|||||||++++.+.++ ....+.+..++....+.+++ ..+.+|||+|++ ++.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 38999999999999999999998864 35556566677777888876 458999999998 6643 23467
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE-ee
Q 028037 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF-HI 212 (215)
Q Consensus 169 ~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV-a~ 212 (215)
++.+|++|+|||.+++.+++..+- ++.+ .+.|+++| +|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~i-l~~l-----~~~piivV~NK 359 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRKI-LERI-----KNKRYLVVINK 359 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHHH-HHHH-----TTSSEEEEEEE
T ss_pred hhcccEEEEEecCCCCCCHHHHHH-HHHh-----cCCCEEEEEEC
Confidence 899999999999999988877543 3433 24565544 44
No 148
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=120.42 Aligned_cols=109 Identities=8% Similarity=0.158 Sum_probs=68.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC-CCC-Ccc--------ccceeeeEEEEEEECCeEEEEEEEecCCC-------CCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGN-EQE-RSL--------QMAGLNLINKTLMVQGARIAFSIWDVGGD-------SRS 161 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~-~f~-~~~--------~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~-------e~~ 161 (215)
..+||+++|++|+|||||++++++. .|. .+. +|++.++....+..++..+.+++|||+|+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4689999999999999999997654 444 322 45666655555555677889999999999 778
Q ss_pred Cccch-------hhccCCcEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037 162 FDHVP-------IACKDAVAI-----------LFMFDLTS-RCTLNSIV-GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 162 ~~~~~-------~~~~~a~~i-----------ilvfdit~-~~Sf~~i~-~wl~~i~~~~~~~~piIlVa 211 (215)
..+.. .|+++++++ +++|++++ ..+|..+. .|+..+ ..++|+|+|.
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~ 181 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVI 181 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEE
Confidence 87776 777766655 58899887 77888776 566655 2567766664
No 149
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.41 E-value=2e-13 Score=123.19 Aligned_cols=103 Identities=19% Similarity=0.367 Sum_probs=70.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc--------hhhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC 169 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~--------~~~~ 169 (215)
.+||+++|++|||||||+++|.+.++. ...+++..++....+.+++. .+.+|||+|..++.... ..++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 589999999999999999999987653 44556666666667777774 57999999987654432 3367
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF 210 (215)
Q Consensus 170 ~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV 210 (215)
+++|++++|||.+++.+++. ..|++.+.. .|+++|
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~~-----~piivV 336 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQVKH-----RPLILV 336 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHHTT-----SCEEEE
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhccC-----CcEEEE
Confidence 89999999999999887765 567766632 465554
No 150
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.40 E-value=2.9e-12 Score=113.49 Aligned_cols=114 Identities=13% Similarity=0.073 Sum_probs=81.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEE----------------EEEEE---CCeEEEEEEEecCCC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLIN----------------KTLMV---QGARIAFSIWDVGGD 158 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~----------------~~v~~---~~~~~~l~i~Dt~G~ 158 (215)
...+||+++|..++|||||+++|.+................ ..... ......+.+|||+|+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 45789999999999999999999975433211000000000 00000 123378999999999
Q ss_pred CCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII 213 (215)
Q Consensus 159 e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~ 213 (215)
++|......++..+|++|+|+|.++..++.....|+..++.... .| +++++|+
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK~ 139 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKV 139 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECG
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEECc
Confidence 99999888999999999999999998888888899888876652 24 4455653
No 151
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.39 E-value=9.8e-13 Score=117.95 Aligned_cols=86 Identities=9% Similarity=0.094 Sum_probs=64.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCC--CC------------------------------CccccceeeeEEEEEEECC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QE------------------------------RSLQMAGLNLINKTLMVQG 145 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~--f~------------------------------~~~~t~g~~~~~~~v~~~~ 145 (215)
...++|+++|..++|||||+++|+... +. +..+.+..+.....+..+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~- 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE- 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC-
Confidence 347899999999999999999995431 11 111223334333334333
Q ss_pred eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChh
Q 028037 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 185 (215)
Q Consensus 146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~ 185 (215)
...+.||||+|+++|......+++.+|++|+|+|.++..
T Consensus 94 -~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~ 132 (439)
T 3j2k_7 94 -KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGE 132 (439)
T ss_pred -CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCc
Confidence 458999999999999988888999999999999999853
No 152
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.39 E-value=2.5e-13 Score=122.75 Aligned_cols=112 Identities=9% Similarity=0.042 Sum_probs=65.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhc--CCCCC--------------------------------ccccceeeeEEEEEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVG--NEQER--------------------------------SLQMAGLNLINKTLMV 143 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~--~~f~~--------------------------------~~~t~g~~~~~~~v~~ 143 (215)
...+||+++|..++|||||+++|+. +.+.+ ...|++..+ ..+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~--~~~~~ 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR--AYFET 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C--CEEEC
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee--EEEec
Confidence 4568999999999999999999974 32210 001222221 12333
Q ss_pred CCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037 144 QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR---CTLNSIVGWYSEARKWNQVTKQ--SLFFHII 213 (215)
Q Consensus 144 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~---~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~ 213 (215)
+ ..++.||||+|+++|......++..+|++|+|+|.++. .||+....|.+.+......++| +++++|+
T Consensus 119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~ 191 (467)
T 1r5b_A 119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKM 191 (467)
T ss_dssp S--SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECT
T ss_pred C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECc
Confidence 3 36799999999999998888889999999999999986 4666544455544433324565 5556664
No 153
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.38 E-value=1.7e-13 Score=122.62 Aligned_cols=114 Identities=12% Similarity=0.180 Sum_probs=78.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC--CCC-Ccc---------------------c------cceeeeEEEEEEECCeEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQE-RSL---------------------Q------MAGLNLINKTLMVQGARI 148 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~--~f~-~~~---------------------~------t~g~~~~~~~v~~~~~~~ 148 (215)
..+||+++|..++|||||+++|+++ .+. ... . ..|.........++....
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 4689999999999999999999864 333 110 0 011111111222334457
Q ss_pred EEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC----CCc-e-EEEEeec
Q 028037 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ----VTK-Q-SLFFHII 213 (215)
Q Consensus 149 ~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~----~~~-p-iIlVa~~ 213 (215)
++.||||+|+++|......+++.+|++|+|||.++ .+|+++..|..+.+++.. .++ | +++++|+
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~ 154 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKM 154 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECG
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 89999999999998888889999999999999999 899987766655544321 233 2 5667764
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.37 E-value=8.6e-13 Score=119.54 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=65.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCC--CC-Cc---------------------------cccceeeeEEEEEEECCeE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QE-RS---------------------------LQMAGLNLINKTLMVQGAR 147 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~--f~-~~---------------------------~~t~g~~~~~~~v~~~~~~ 147 (215)
...+||+++|..++|||||+++|++.. +. .+ ....|.++......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 347999999999999999999997651 11 00 0011333333344444556
Q ss_pred EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHH
Q 028037 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS 189 (215)
Q Consensus 148 ~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~ 189 (215)
..+.||||+|+++|......+++.+|++|+|+|.++..++..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~ 152 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 152 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccc
Confidence 789999999999999999999999999999999999876544
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.37 E-value=7.8e-13 Score=117.16 Aligned_cols=112 Identities=12% Similarity=0.128 Sum_probs=81.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC--------CCCCc--------cccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGN--------EQERS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~--------~f~~~--------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~ 161 (215)
...+||+++|..++|||||++++.+. .|..+ ..+.|.++....+.++.....+.||||+|+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45799999999999999999999873 33211 012344443344555555578999999999999
Q ss_pred CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-E-EEEeec
Q 028037 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-S-LFFHII 213 (215)
Q Consensus 162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-i-IlVa~~ 213 (215)
......++..+|++|+|+|.++.... ...+|+..+... ++| + ++++|+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~ 138 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKV 138 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECG
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECc
Confidence 88888889999999999999987643 446677666553 466 4 567764
No 156
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.36 E-value=8.4e-14 Score=127.71 Aligned_cols=107 Identities=8% Similarity=0.059 Sum_probs=80.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv 178 (215)
..+|+++|..++|||||+++|.+..+. .+.+++..++....+..++ ...++||||+|++.|..++..+++.+|++|+|
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 578999999999999999999988877 5555555555444444422 23689999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
||.++....+....| ..+. ..++|+++|.
T Consensus 83 VDa~dg~~~qt~e~l-~~~~---~~~vPiIVVi 111 (537)
T 3izy_P 83 VAADDGVMKQTVESI-QHAK---DAHVPIVLAI 111 (537)
T ss_dssp CBSSSCCCHHHHHHH-HHHH---TTTCCEEECC
T ss_pred EECCCCccHHHHHHH-HHHH---HcCCcEEEEE
Confidence 999997665554433 2332 2456766553
No 157
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.33 E-value=1.4e-12 Score=121.03 Aligned_cols=106 Identities=16% Similarity=0.097 Sum_probs=75.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCcc-----ccceeeeEEEEE------------EECCeEEEEEEEecCCCCCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-----QMAGLNLINKTL------------MVQGARIAFSIWDVGGDSRS 161 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~-----~t~g~~~~~~~v------------~~~~~~~~l~i~Dt~G~e~~ 161 (215)
...+|+++|..++|||||++++.+..+.++. +++|..+..... .++.....++||||+|++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4579999999999999999999976554322 234433321110 00011235999999999999
Q ss_pred CccchhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 162 FDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 162 ~~~~~~~~~~a~~iilvfdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
..++..+++.+|++|+|||.++ ++|++.+..+ +. .++|+++|.
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~---~~vPiIVVi 129 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YRTPFVVAA 129 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH---TTCCEEEEE
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH---cCCeEEEEe
Confidence 9999999999999999999999 8888776532 22 356765553
No 158
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.33 E-value=5.8e-12 Score=112.72 Aligned_cols=107 Identities=13% Similarity=0.223 Sum_probs=70.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc-----------c
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-----------V 165 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~-----------~ 165 (215)
..+||+++|++|||||||++++.+..+. ...+.+..+.....+.++|. .+.+|||+|+.++... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 3589999999999999999999988763 44454445555567778876 5789999998543221 1
Q ss_pred -hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 166 -PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 166 -~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
..+++.+|++++|+|.++..+++.. .+...+.. .+.|+++|.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~ 299 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVF 299 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEE
Confidence 2467789999999999988777653 23333333 346766554
No 159
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.33 E-value=2.8e-12 Score=116.33 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=67.2
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCC-------CC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhh
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNE-------QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA 168 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~-------f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~ 168 (215)
.+..++|+++|..++|||||++++.+.. +. +..+.+..+.....+.+++ ..+.+|||+|+++|......+
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 3568999999999999999999999876 22 2222122222222344444 679999999999998888888
Q ss_pred ccCCcEEEEEEeCCC---hhhHHHHH
Q 028037 169 CKDAVAILFMFDLTS---RCTLNSIV 191 (215)
Q Consensus 169 ~~~a~~iilvfdit~---~~Sf~~i~ 191 (215)
+..+|++|+|+|.++ +++++.+.
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l~ 119 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHML 119 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHHH
T ss_pred HhhCCEEEEEEecCCCccHHHHHHHH
Confidence 999999999999998 66666554
No 160
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.31 E-value=6.8e-12 Score=120.67 Aligned_cols=110 Identities=11% Similarity=0.055 Sum_probs=79.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC------------CCCCc-----c--ccceeeeEEEEEE------------ECCeE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGN------------EQERS-----L--QMAGLNLINKTLM------------VQGAR 147 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~------------~f~~~-----~--~t~g~~~~~~~v~------------~~~~~ 147 (215)
...||+++|..++|||||+++++.. .+.++ . .|+........+. .++..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 3679999999999999999999864 12111 1 1222222222222 24558
Q ss_pred EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEee
Q 028037 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHI 212 (215)
Q Consensus 148 ~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~ 212 (215)
+.++||||+|+.+|......+++.+|++|+|||.++..+++....|..... .++| +++++|
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK 159 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINK 159 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEEC
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEEC
Confidence 999999999999999999999999999999999999999998877765442 2455 445554
No 161
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.30 E-value=4.8e-13 Score=120.57 Aligned_cols=83 Identities=8% Similarity=0.130 Sum_probs=63.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC--CCCC--------------------------------ccccceeeeEEEEEEE
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQER--------------------------------SLQMAGLNLINKTLMV 143 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~--~f~~--------------------------------~~~t~g~~~~~~~v~~ 143 (215)
...++|+++|..++|||||+++|++. .+.+ .-.|+...+ . .+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~--~--~~ 80 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL--W--KF 80 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC--E--EE
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE--E--EE
Confidence 45799999999999999999999864 2211 001222222 2 23
Q ss_pred CCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037 144 QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 144 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~ 184 (215)
+.....+.||||+|+++|......++..+|++|+|+|.++.
T Consensus 81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence 34456899999999999988888899999999999999986
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.29 E-value=1.2e-11 Score=110.58 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=73.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCC---CCCc----------cccce-------------------eeeEEEEEEECC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNE---QERS----------LQMAG-------------------LNLINKTLMVQG 145 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~---f~~~----------~~t~g-------------------~~~~~~~v~~~~ 145 (215)
...+||+++|..++|||||+++|+++. +.+. ..+++ .........++.
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 346899999999999999999998654 1111 11211 111111222333
Q ss_pred eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII 213 (215)
Q Consensus 146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~ 213 (215)
...++.||||+|+++|......++..+|++|+|+|.++.... ....|+..+.... ..| +++++|+
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~~--~~~iIvviNK~ 167 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLLG--IKHIVVAINKM 167 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHTT--CCEEEEEEECT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcC--CCeEEEEEEcC
Confidence 456799999999999988888889999999999999986533 3345555554432 124 4456653
No 163
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.29 E-value=2.8e-12 Score=119.10 Aligned_cols=107 Identities=11% Similarity=0.187 Sum_probs=73.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCC--CC---------Ccc---ccceeeeEEEEEEE-----CCeEEEEEEEecCCCCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNE--QE---------RSL---QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSR 160 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~--f~---------~~~---~t~g~~~~~~~v~~-----~~~~~~l~i~Dt~G~e~ 160 (215)
..+|+++|..++|||||+++++... +. ++. .+.|.++....+.+ ++..+.++||||+|+++
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4689999999999999999998621 11 111 12344443333333 56679999999999999
Q ss_pred CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF 210 (215)
Q Consensus 161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV 210 (215)
|......+++.+|++|+|+|.++..+++....|+.... .++|+|+|
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvV 129 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPV 129 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEE
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEe
Confidence 99888899999999999999999988998888887664 24665554
No 164
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.28 E-value=1.7e-12 Score=118.97 Aligned_cols=108 Identities=11% Similarity=0.116 Sum_probs=77.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc------------------CCCCCccc---cceeeeEEEEEEECCeEEEEEEEecCCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG------------------NEQERSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGD 158 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~------------------~~f~~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~ 158 (215)
..+|+++|.+++|||||+++++. ..+.++.+ ..|..+......++...+.++||||+|+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 57999999999999999999961 11111111 1233332333333334578999999999
Q ss_pred CCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 159 e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
++|......+++.+|++|+|+|.++..+.+....|. .+.. .++|+++|.
T Consensus 93 ~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivvi 141 (528)
T 3tr5_A 93 ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFI 141 (528)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEE
T ss_pred hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEE
Confidence 999999999999999999999999988888877664 3333 356765543
No 165
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.28 E-value=5.5e-12 Score=111.52 Aligned_cols=110 Identities=9% Similarity=0.128 Sum_probs=76.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC-------CCCCc--c------ccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN-------EQERS--L------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~-------~f~~~--~------~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~ 164 (215)
.+||+++|..++|||||+++|.+. .|..+ . ...|.......+.++.....+.||||+|+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 689999999999999999999864 12111 0 11233333233444445578999999999999888
Q ss_pred chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ--SLFFHII 213 (215)
Q Consensus 165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~ 213 (215)
...+++.+|++|+|+|.++....+....| ..++. .++| +++++|+
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~ 129 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKA 129 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECG
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECc
Confidence 88889999999999999996544443333 44443 2466 4567664
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.6e-12 Score=121.05 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=64.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Ccc-----------------------------ccceeeeEEEEEEECCe
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSL-----------------------------QMAGLNLINKTLMVQGA 146 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~-----------------------------~t~g~~~~~~~v~~~~~ 146 (215)
....+||+++|..++|||||+++|++.... ... ...|..+......++..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 345789999999999999999999976432 110 00122222222223334
Q ss_pred EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~ 184 (215)
...+.||||+|+++|......+++.+|++|+|+|.++.
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence 56899999999999998888899999999999999984
No 167
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.27 E-value=5.8e-12 Score=106.12 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=70.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc------cccc-----------------e-----ee-------------
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS------LQMA-----------------G-----LN------------- 135 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~------~~t~-----------------g-----~~------------- 135 (215)
....||+++|++|||||||+++|++..+. .. .++. | .+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999998874 11 1210 0 00
Q ss_pred --------eEEEEEEEC-CeEEEEEEEecCCCCC-------------CCccchhhccCCcEEE-EEEeCCChhhHHHHHH
Q 028037 136 --------LINKTLMVQ-GARIAFSIWDVGGDSR-------------SFDHVPIACKDAVAIL-FMFDLTSRCTLNSIVG 192 (215)
Q Consensus 136 --------~~~~~v~~~-~~~~~l~i~Dt~G~e~-------------~~~~~~~~~~~a~~ii-lvfdit~~~Sf~~i~~ 192 (215)
.....+.+. .....+.||||+|... +..+...|++.+++++ +|+|.++..+.+....
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000001110 0136799999999653 3345667888888777 6899988766555555
Q ss_pred HHHHHHhHCCCCceEEEEe
Q 028037 193 WYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 193 wl~~i~~~~~~~~piIlVa 211 (215)
|++.+.. .+.|+++|.
T Consensus 184 ~~~~~~~---~~~~~i~V~ 199 (299)
T 2aka_B 184 IAKEVDP---QGQRTIGVI 199 (299)
T ss_dssp HHHHHCT---TCSSEEEEE
T ss_pred HHHHhCC---CCCeEEEEE
Confidence 6666543 456765553
No 168
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.27 E-value=1.3e-11 Score=109.53 Aligned_cols=77 Identities=19% Similarity=0.306 Sum_probs=65.7
Q ss_pred cceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhH
Q 028037 131 MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKW 200 (215)
Q Consensus 131 t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~----------~~Sf~~i~~wl~~i~~~ 200 (215)
|+|.+. +.+.+++ ++++||||+||+.|+.++..||++++++|+|||+++ .++|+++..|++++.+.
T Consensus 204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 456554 3455554 889999999999999999999999999999999999 99999999999999875
Q ss_pred C-CCCceEEEEe
Q 028037 201 N-QVTKQSLFFH 211 (215)
Q Consensus 201 ~-~~~~piIlVa 211 (215)
. ..++|+|||+
T Consensus 280 ~~~~~~piiLvg 291 (402)
T 1azs_C 280 RWLRTISVILFL 291 (402)
T ss_dssp TTCSSCCEEEEE
T ss_pred ccCCCCeEEEEE
Confidence 3 3678888876
No 169
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.27 E-value=2.6e-11 Score=107.51 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=67.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC---CCC-Cccc--cceeeeEEEEEEE-------------C--C----eEEEEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGN---EQE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFSIW 153 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~---~f~-~~~~--t~g~~~~~~~v~~-------------~--~----~~~~l~i~ 153 (215)
..+||+++|..++|||||++++.+. .+. +..+ |++..|....+.. + + ....+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4689999999999999999999843 333 3333 5555555444322 1 1 13789999
Q ss_pred ecCCCCCCCccchhhccCCcEEEEEEeCCC----hhhHHHHHHH
Q 028037 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNSIVGW 193 (215)
Q Consensus 154 Dt~G~e~~~~~~~~~~~~a~~iilvfdit~----~~Sf~~i~~w 193 (215)
||+|+++|.......+..+|++|+|+|.++ +++++.+..|
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~ 130 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL 130 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH
Confidence 999999887766666778899999999994 5677666544
No 170
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.27 E-value=8.7e-12 Score=106.42 Aligned_cols=106 Identities=11% Similarity=0.044 Sum_probs=70.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccc-cceeeeEEEEEEECCeEEEEEEEecCCCC---------CCCccc
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDS---------RSFDHV 165 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e---------~~~~~~ 165 (215)
....+|+++|.+|||||||++++++..+. ...+ ++. +.....+..+ ..++.+|||+|.+ .+....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr-~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR-HRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCS-SCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcce-eeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHH
Confidence 45678999999999999999999988764 2222 221 1111222333 4678999999998 344455
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa 211 (215)
..+++.+|++++|+|.++ +.....|+-+... ..+.|+++|.
T Consensus 83 ~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvl 123 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAV 123 (301)
T ss_dssp TSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEE
T ss_pred HHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEE
Confidence 677899999999999987 4444455544322 2356765553
No 171
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.27 E-value=6.7e-12 Score=116.48 Aligned_cols=109 Identities=10% Similarity=0.183 Sum_probs=75.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC--CCC---------Cccc---cceeeeEEE--EEEE---CCeEEEEEEEecCCCCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN--EQE---------RSLQ---MAGLNLINK--TLMV---QGARIAFSIWDVGGDSR 160 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~--~f~---------~~~~---t~g~~~~~~--~v~~---~~~~~~l~i~Dt~G~e~ 160 (215)
..+|+++|..++|||||+++++.. .+. ++.+ ..|.++... .+.+ ++..+.++||||+|+++
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 579999999999999999999852 111 1100 123332211 2222 56679999999999999
Q ss_pred CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE-Eee
Q 028037 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF-FHI 212 (215)
Q Consensus 161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl-Va~ 212 (215)
|......+++.+|++|+|+|.++..+++....|..... .++|+|+ ++|
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNK 134 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINK 134 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEEC
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEec
Confidence 98888888999999999999999999999888877654 3466554 444
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.26 E-value=4e-12 Score=101.42 Aligned_cols=103 Identities=12% Similarity=0.201 Sum_probs=63.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC----------Cccchh
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----------FDHVPI 167 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~----------~~~~~~ 167 (215)
...+|+++|++|||||||++++.+..+. .+.++.|.......+.+++ .+.+||++|.... ......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 3579999999999999999999988765 5455666554444444443 5789999998532 222233
Q ss_pred hc---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEE
Q 028037 168 AC---KDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQVTKQSLFF 210 (215)
Q Consensus 168 ~~---~~a~~iilvfdit~~~Sf~~--i~~wl~~i~~~~~~~~piIlV 210 (215)
++ ..++++++++|+++..++.. +..|+.. .++|+++|
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~v 143 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD------SNIAVLVL 143 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEE
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH------cCCCeEEE
Confidence 44 47899999999998766643 3345432 35776654
No 173
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.26 E-value=7.2e-12 Score=110.03 Aligned_cols=100 Identities=6% Similarity=0.016 Sum_probs=72.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi 181 (215)
+|+++|..++|||||++++. +...|++..+ .. ++.....++||||+|+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~--~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITM--YN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEE--EE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeE--EE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 99999999999999999998 1222333333 22 33334569999999999998777778899999999999
Q ss_pred CChhhHHHHHHHHHHHHhHCCCCceEEEEe-ec
Q 028037 182 TSRCTLNSIVGWYSEARKWNQVTKQSLFFH-II 213 (215)
Q Consensus 182 t~~~Sf~~i~~wl~~i~~~~~~~~piIlVa-~~ 213 (215)
+...+....+|+..+.... ....+++++ |+
T Consensus 93 -~~g~~~qt~e~~~~~~~~~-i~~~ivvvNNK~ 123 (370)
T 2elf_A 93 -PQGLDAHTGECIIALDLLG-FKHGIIALTRSD 123 (370)
T ss_dssp -TTCCCHHHHHHHHHHHHTT-CCEEEEEECCGG
T ss_pred -CCCCcHHHHHHHHHHHHcC-CCeEEEEEEecc
Confidence 4556667778877776543 223355665 53
No 174
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.25 E-value=1.3e-11 Score=108.09 Aligned_cols=96 Identities=14% Similarity=0.081 Sum_probs=67.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEEECCe---------------EEEEEEEecCCCCCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRS 161 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v~~~~~---------------~~~l~i~Dt~G~e~~ 161 (215)
.+||.++|.+|||||||++++.+..+. ..++ |++.+.. .+.+++. ...+++|||+|+.++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 479999999999999999999988764 3333 4444433 3444443 257999999999876
Q ss_pred C----ccch---hhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHH
Q 028037 162 F----DHVP---IACKDAVAILFMFDLTS----------RCTLNSIVGWYSEA 197 (215)
Q Consensus 162 ~----~~~~---~~~~~a~~iilvfdit~----------~~Sf~~i~~wl~~i 197 (215)
. .+.. .+++++|++++|+|+++ .+.++.+..|..++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL 132 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTEL 132 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHH
Confidence 3 2333 34789999999999997 25666666555555
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.24 E-value=1.3e-11 Score=113.17 Aligned_cols=110 Identities=10% Similarity=0.061 Sum_probs=71.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC--CCC----------------C---ccccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQE----------------R---SLQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~--~f~----------------~---~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G 157 (215)
...||+++|..++|||||+++++.. .+. + ...+.|.++......++...+.++||||+|
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 3689999999999999999999863 110 0 001223333222333333457899999999
Q ss_pred CCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE-Eee
Q 028037 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF-FHI 212 (215)
Q Consensus 158 ~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl-Va~ 212 (215)
+++|......+++.+|++|+|+|.++...-+. ..++..+.. .++|+++ ++|
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~---~~ipiivviNK 143 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL---RDTPILTFMNK 143 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT---TTCCEEEEEEC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH---cCCCEEEEEcC
Confidence 99999888889999999999999998643222 233333322 3566554 444
No 176
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.22 E-value=7.5e-11 Score=104.56 Aligned_cols=97 Identities=11% Similarity=0.157 Sum_probs=69.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC---CCC-Cccc--cceeeeEEEEEEE-------------C--C----eEEEEE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGN---EQE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFS 151 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~---~f~-~~~~--t~g~~~~~~~v~~-------------~--~----~~~~l~ 151 (215)
....++|+++|..++|||||++++.+. .+. +..+ |+...+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 345799999999999999999999843 333 3233 5555554433322 1 1 137899
Q ss_pred EEecCCCCCCCccchhhccCCcEEEEEEeCCC----hhhHHHHHHH
Q 028037 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNSIVGW 193 (215)
Q Consensus 152 i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~----~~Sf~~i~~w 193 (215)
||||+|+++|.......+..+|++|+|+|.++ .++++.+..|
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~ 132 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 132 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH
Confidence 99999999887666666778899999999994 5666666544
No 177
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.19 E-value=6.3e-12 Score=114.39 Aligned_cols=90 Identities=10% Similarity=0.094 Sum_probs=67.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil 177 (215)
+..+|+++|..++|||||++++.+..+. .+.+.+..+.....+..++ ..++||||+|++.|..++..++..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 3579999999999999999999987665 3333222222222333344 468999999999999999999999999999
Q ss_pred EEeCCC---hhhHHHH
Q 028037 178 MFDLTS---RCTLNSI 190 (215)
Q Consensus 178 vfdit~---~~Sf~~i 190 (215)
|||.++ +++++.+
T Consensus 81 VVda~~g~~~qT~e~l 96 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI 96 (501)
T ss_dssp EEETTTBSCTTTHHHH
T ss_pred EeecccCccHHHHHHH
Confidence 999998 4554443
No 178
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.18 E-value=8.3e-11 Score=104.20 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=59.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEE-------------------EECC-eEEEEEEEecCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTL-------------------MVQG-ARIAFSIWDVGG 157 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v-------------------~~~~-~~~~l~i~Dt~G 157 (215)
+||.++|.++||||||++++.+.... ..++ |...+.....+ .+++ ..+.+++|||+|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999988743 3332 22222221111 1233 357899999999
Q ss_pred CCC----CCccch---hhccCCcEEEEEEeCCCh-----------hhHHHHHHHHHHHHhH
Q 028037 158 DSR----SFDHVP---IACKDAVAILFMFDLTSR-----------CTLNSIVGWYSEARKW 200 (215)
Q Consensus 158 ~e~----~~~~~~---~~~~~a~~iilvfdit~~-----------~Sf~~i~~wl~~i~~~ 200 (215)
..+ ...+.. .+++++|++++|+|.++. +.++.+..|..++..+
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~ 141 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYW 141 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHH
Confidence 864 233333 346899999999999987 6788877766666543
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.17 E-value=4.7e-11 Score=103.98 Aligned_cols=108 Identities=13% Similarity=0.160 Sum_probs=70.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccccce----------------------------------------------
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAG---------------------------------------------- 133 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g---------------------------------------------- 133 (215)
.+|+++|++|+|||||++++.+..|. ....+..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 39999999999999999999998873 2111100
Q ss_pred ------eeeEEEEEEE-CCeEEEEEEEecCCCCCC-------------CccchhhccCCcEEEEEEeCCChhhHHHHHHH
Q 028037 134 ------LNLINKTLMV-QGARIAFSIWDVGGDSRS-------------FDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193 (215)
Q Consensus 134 ------~~~~~~~v~~-~~~~~~l~i~Dt~G~e~~-------------~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~w 193 (215)
+......+.+ ......+.+|||+|..++ ..+...|++++|++|+|+|.++.+... ..|
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~ 192 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence 0000001111 111246899999999887 556778899999999999877654332 456
Q ss_pred HHHHHhHCCCCceEEEE
Q 028037 194 YSEARKWNQVTKQSLFF 210 (215)
Q Consensus 194 l~~i~~~~~~~~piIlV 210 (215)
+..++.....+.|+|+|
T Consensus 193 ~~l~~~~~~~~~~~i~V 209 (360)
T 3t34_A 193 IKISREVDPSGDRTFGV 209 (360)
T ss_dssp HHHHHHSCTTCTTEEEE
T ss_pred HHHHHHhcccCCCEEEE
Confidence 66666555555665554
No 180
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.17 E-value=5.9e-11 Score=111.94 Aligned_cols=107 Identities=15% Similarity=0.073 Sum_probs=75.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC--CCC------------C-------ccccceeeeEEEEEEECCeEEEEEEEecC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQE------------R-------SLQMAGLNLINKTLMVQGARIAFSIWDVG 156 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~--~f~------------~-------~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~ 156 (215)
....+|+++|..++|||||+++++.. .+. + ...|++.. ...+..+ .+.++||||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~~--~~~i~liDTP 85 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFWK--DHRINIIDTP 85 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEET--TEEEEEECCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEEC--CeEEEEEECc
Confidence 34689999999999999999999842 111 0 01122222 1222333 4789999999
Q ss_pred CCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE-EEee
Q 028037 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL-FFHI 212 (215)
Q Consensus 157 G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI-lVa~ 212 (215)
|+.+|......+++.+|++|+|+|.++..+++....|.. +.+ .++|++ +++|
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNK 138 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANK 138 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEEC
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEEC
Confidence 999999899999999999999999999999888877764 333 245654 4454
No 181
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.17 E-value=1.2e-11 Score=121.20 Aligned_cols=114 Identities=9% Similarity=0.094 Sum_probs=77.4
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcC-------CCCC--------ccccceeeeEEEEEEECCeEEEEEEEecCCCCC
Q 028037 96 SDLVSLKISLLGDCQIGKTSFVVKYVGN-------EQER--------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (215)
Q Consensus 96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~-------~f~~--------~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~ 160 (215)
.....+||+++|..++|||||++++.+. .|.. ...+.|.++....+.++.....++||||+|+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 3455799999999999999999999863 1111 112334443333344555567899999999999
Q ss_pred CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ--SLFFHII 213 (215)
Q Consensus 161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~ 213 (215)
|......+++.+|++|+|+|.++....+ ..+|+..++.. ++| |++++|+
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l---gIP~IIVVINKi 422 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV---GVPYIIVFLNKC 422 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH---TCSCEEEEEECC
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc---CCCeEEEEEeec
Confidence 9888888899999999999999875433 34566666543 466 4567764
No 182
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.17 E-value=2.5e-11 Score=107.32 Aligned_cols=91 Identities=13% Similarity=0.205 Sum_probs=52.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCe---------------EEEEEEEecCCCCCCCc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRSFD 163 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~---------------~~~l~i~Dt~G~e~~~~ 163 (215)
.++|.++|.+|||||||++++.+..+. ..++.+..+.....+.+++. ...+++||++|..++..
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 579999999999999999999988765 44444434444445555542 24599999999887543
Q ss_pred -------cchhhccCCcEEEEEEeCCChhhHHHH
Q 028037 164 -------HVPIACKDAVAILFMFDLTSRCTLNSI 190 (215)
Q Consensus 164 -------~~~~~~~~a~~iilvfdit~~~Sf~~i 190 (215)
....+++++|++++|+|.++.+++.++
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v 135 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDDDITHV 135 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC---------
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhh
Confidence 345678999999999999987665443
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.16 E-value=4.8e-11 Score=112.59 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=74.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccccce--------eeeEEEEEEE-CCe----------------------
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAG--------LNLINKTLMV-QGA---------------------- 146 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g--------~~~~~~~v~~-~~~---------------------- 146 (215)
.++|+++|++|+|||||++++++..+. ...+++. .+... ++.+ ++.
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~-t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKV-TIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEE-EEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeE-EEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 689999999999999999999988754 3334331 11000 1111 110
Q ss_pred -----------------------E--EEEEEEecCCCCC---CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028037 147 -----------------------R--IAFSIWDVGGDSR---SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198 (215)
Q Consensus 147 -----------------------~--~~l~i~Dt~G~e~---~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~ 198 (215)
. ..+.||||+|... .......|++++|++|+|+|.++..++.....|.+.+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0 3589999999654 34456678899999999999999999888888876664
Q ss_pred hHCCCCceE-EEEee
Q 028037 199 KWNQVTKQS-LFFHI 212 (215)
Q Consensus 199 ~~~~~~~pi-IlVa~ 212 (215)
.. +.|+ ++++|
T Consensus 228 ~~---~~~iiiVlNK 239 (695)
T 2j69_A 228 GR---GLTVFFLVNA 239 (695)
T ss_dssp TS---CCCEEEEEEC
T ss_pred hh---CCCEEEEEEC
Confidence 33 3454 44454
No 184
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.16 E-value=8.5e-11 Score=104.78 Aligned_cols=111 Identities=9% Similarity=0.118 Sum_probs=66.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc--------cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc----
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---- 163 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~--------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~---- 163 (215)
....++|+++|++|+|||||++.+++..+. .. .++.+.+.....+..++....+++||++|...+..
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 345789999999999999999999988773 21 12333333222223345556899999999876421
Q ss_pred ---------------------cchhhccCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037 164 ---------------------HVPIACKDAVAILFMFDLTSR-CTLNSIV-GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 164 ---------------------~~~~~~~~a~~iilvfdit~~-~Sf~~i~-~wl~~i~~~~~~~~piIlVa 211 (215)
+...++.++++.+++|++... .+|+.+. .|+.++. .++|+|+|.
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVi 174 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLI 174 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEE
Confidence 234466788888888888765 5777775 6888774 256766654
No 185
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.15 E-value=1.2e-11 Score=105.46 Aligned_cols=88 Identities=10% Similarity=-0.040 Sum_probs=72.2
Q ss_pred HHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChh-hHHHHH
Q 028037 115 SFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIV 191 (215)
Q Consensus 115 SLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~-Sf~~i~ 191 (215)
+|+.+|+.+.|. ++.+|+|..+. ..+..++ +++|||+ |++|..+++.||+++|++|+|||+++++ ||+.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 699999999996 56689995554 3332333 7899999 9999999999999999999999999998 799999
Q ss_pred HHHHHHHhHCCCCceEEEEe
Q 028037 192 GWYSEARKWNQVTKQSLFFH 211 (215)
Q Consensus 192 ~wl~~i~~~~~~~~piIlVa 211 (215)
.|+.+++. .++|++||+
T Consensus 106 ~~l~~~~~---~~~piilv~ 122 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVI 122 (301)
T ss_dssp HHHHHHHH---TTCEEEEEE
T ss_pred HHHHHHHH---CCCCEEEEE
Confidence 99998876 357766664
No 186
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.13 E-value=4.2e-11 Score=110.19 Aligned_cols=107 Identities=15% Similarity=0.101 Sum_probs=73.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC----CccccceeeeEEEEEEECCe-----------------------------
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE----RSLQMAGLNLINKTLMVQGA----------------------------- 146 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~----~~~~t~g~~~~~~~v~~~~~----------------------------- 146 (215)
..+|+++|..|+|||||++++++..+. ...+++... ..+..+..
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~---~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF---VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE---EEEECCSSSEEECCC------------------CCCT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE---EEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 579999999999999999999998762 222322100 00000000
Q ss_pred --E---------EEEEEEecCCCCC-----------CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCC
Q 028037 147 --R---------IAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVT 204 (215)
Q Consensus 147 --~---------~~l~i~Dt~G~e~-----------~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~ 204 (215)
. ..+.||||+|... |......++..+|++|+|+|.++....+....|++.+.+. +
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---E 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---G
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---C
Confidence 0 2589999999875 3345566788999999999999876677778888877543 3
Q ss_pred ce-EEEEee
Q 028037 205 KQ-SLFFHI 212 (215)
Q Consensus 205 ~p-iIlVa~ 212 (215)
.| ++|++|
T Consensus 219 ~pvilVlNK 227 (550)
T 2qpt_A 219 DKIRVVLNK 227 (550)
T ss_dssp GGEEEEEEC
T ss_pred CCEEEEEEC
Confidence 45 444554
No 187
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.13 E-value=9.6e-11 Score=110.52 Aligned_cols=108 Identities=14% Similarity=0.149 Sum_probs=75.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc--CCCC------------Cccc---cceeee--EEEEEEECCeEEEEEEEecCCCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVG--NEQE------------RSLQ---MAGLNL--INKTLMVQGARIAFSIWDVGGDS 159 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~--~~f~------------~~~~---t~g~~~--~~~~v~~~~~~~~l~i~Dt~G~e 159 (215)
...+|+++|..++|||||+++++. +.+. ++.+ ..+... ....+..+ .+.++||||+|+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~ 86 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGHV 86 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCCc
Confidence 368999999999999999999985 3321 1000 011111 11223333 4789999999999
Q ss_pred CCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE-EEEee
Q 028037 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQS-LFFHI 212 (215)
Q Consensus 160 ~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~pi-IlVa~ 212 (215)
+|......+++.+|++|+|+|.++..+++....|.. +.+. ++|+ ++++|
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK 136 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNK 136 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEEC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEEC
Confidence 999888999999999999999999988888777754 4432 4554 44555
No 188
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.12 E-value=1.6e-10 Score=109.19 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=75.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC--CCC------------Cccc---cceeeeEEE--EEEE-----CCeEEEEEEEe
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQE------------RSLQ---MAGLNLINK--TLMV-----QGARIAFSIWD 154 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~--~f~------------~~~~---t~g~~~~~~--~v~~-----~~~~~~l~i~D 154 (215)
...+|+++|..++|||||+.+++.. .+. ++.+ ..|..+... .+.. ++..+.++|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 3579999999999999999999742 221 1100 112222111 2222 23458999999
Q ss_pred cCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE-EEee
Q 028037 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL-FFHI 212 (215)
Q Consensus 155 t~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI-lVa~ 212 (215)
|+|+.+|......+++.+|++|+|+|.++..+.+....|.. +.. .++|++ +++|
T Consensus 89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNK 143 (704)
T 2rdo_7 89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNK 143 (704)
T ss_pred CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeC
Confidence 99999998888899999999999999999877776666643 332 245644 4554
No 189
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.12 E-value=3.2e-10 Score=99.28 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=69.3
Q ss_pred CCHHHH--HHHHhcCCCCC--------ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037 111 IGKTSF--VVKYVGNEQER--------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (215)
Q Consensus 111 vGKTSL--i~r~~~~~f~~--------~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd 180 (215)
+.|--| +.|+....+.. ..+|+|.+. ..+.++ .+.++||||+||+.++..+..||++++++|+|||
T Consensus 158 s~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~d 233 (362)
T 1zcb_A 158 SVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVS 233 (362)
T ss_dssp THHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEE
T ss_pred cHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEE
Confidence 344444 66777666652 235677764 345555 4889999999999999999999999999999999
Q ss_pred CCC----------hhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037 181 LTS----------RCTLNSIVGWYSEARKWN-QVTKQSLFFH 211 (215)
Q Consensus 181 it~----------~~Sf~~i~~wl~~i~~~~-~~~~piIlVa 211 (215)
+++ .++|++...|++.+.+.. ..++|+|||+
T Consensus 234 ls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~ 275 (362)
T 1zcb_A 234 SSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL 275 (362)
T ss_dssp TTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEE
T ss_pred CccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEE
Confidence 999 789999999999987643 3578988875
No 190
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.09 E-value=7.4e-11 Score=100.73 Aligned_cols=110 Identities=8% Similarity=0.105 Sum_probs=55.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC-CCC-Cc--------cccceeeeEEEEEEECCeEEEEEEEecCCC-------CC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGN-EQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGD-------SR 160 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~-~f~-~~--------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~-------e~ 160 (215)
...++|+++|++|||||||++++.+. .+. .. .++.+.+.....+..++....+++||++|+ +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34799999999999999999998765 554 22 122222222233333556689999999998 66
Q ss_pred CCccch-------hhccCCcEE-----------EEEEeCCC-hhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037 161 SFDHVP-------IACKDAVAI-----------LFMFDLTS-RCTLNSIVGWYSEARKWNQVTKQSLFF 210 (215)
Q Consensus 161 ~~~~~~-------~~~~~a~~i-----------ilvfdit~-~~Sf~~i~~wl~~i~~~~~~~~piIlV 210 (215)
+..+.. .|+++.++. +++|++.. ..+|+.+.. +.+++.. .++++++|
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~--~~l~~l~-~~~~iilV 161 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV--AFMKAIH-NKVNIVPV 161 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH--HHHHHHT-TTSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH--HHHHHHH-hcCCEEEE
Confidence 666665 565544332 24554442 335666541 3334333 34555444
No 191
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.09 E-value=1.7e-10 Score=108.44 Aligned_cols=110 Identities=11% Similarity=0.049 Sum_probs=77.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC--------------Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--------------~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~ 161 (215)
...+|+++|..|+|||||++++++.... ++.+ ..+..+......+....+.++||||+|+++|
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3579999999999999999999843321 1111 1233444444444444688999999999999
Q ss_pred CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE-Eee
Q 028037 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF-FHI 212 (215)
Q Consensus 162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl-Va~ 212 (215)
......+++.+|++++|+|.++..+.+.. .|+..+... ++|+++ ++|
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~---~ip~ilv~NK 135 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL---GLPRMVVVTK 135 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCEEEEEEC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc---cCCEEEEecC
Confidence 88888999999999999999887554443 555555543 456554 444
No 192
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.07 E-value=1.4e-10 Score=98.46 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=25.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ 125 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f 125 (215)
....+|+++|++|||||||++++++..+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 3357899999999999999999999887
No 193
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.06 E-value=3.7e-11 Score=111.46 Aligned_cols=85 Identities=11% Similarity=0.155 Sum_probs=46.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCC--C-----------------------------C-CccccceeeeEEEEEEECC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNE--Q-----------------------------E-RSLQMAGLNLINKTLMVQG 145 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~--f-----------------------------~-~~~~t~g~~~~~~~v~~~~ 145 (215)
...++|+++|..++|||||+++|+... + . +..+.+..+.. ...+..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~--~~~~~~ 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVA--STTFES 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEee--EEEEEe
Confidence 446899999999999999999996421 0 0 00111122222 222233
Q ss_pred eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (215)
Q Consensus 146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~ 184 (215)
....+.||||+|+++|......++..+|++|+|+|.++.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g 291 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQN 291 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEEC
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 347899999999999988888889999999999999864
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.96 E-value=1.6e-09 Score=96.57 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=73.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchhhc---cCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDA 172 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~~~---~~a 172 (215)
-.|.++|.+|+|||||++.+.+.... ..++.+......-.+.+++ ...+.+||++|..+ +..+...++ ..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 36899999999999999999987543 2222111222223344443 35689999999753 233333333 469
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEE
Q 028037 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ--VTKQSLFF 210 (215)
Q Consensus 173 ~~iilvfdit~~~Sf~~i~~wl~~i~~~~~--~~~piIlV 210 (215)
+.++.++|++ +++++++..|.+++..+.. .+.|.+||
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILV 275 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVA 275 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEE
Confidence 9999999999 7789999999999887652 23554444
No 195
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.95 E-value=1.9e-09 Score=94.61 Aligned_cols=81 Identities=11% Similarity=0.142 Sum_probs=56.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEEECC-------------------eEEEEEEEecCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQG-------------------ARIAFSIWDVGGD 158 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v~~~~-------------------~~~~l~i~Dt~G~ 158 (215)
++|.++|.+|||||||++++.+.... ..++ |+..+.. .+.+.+ ....+++|||+|.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 68999999999999999999976532 2222 2322222 122221 2467999999999
Q ss_pred CCCC----ccch---hhccCCcEEEEEEeCCC
Q 028037 159 SRSF----DHVP---IACKDAVAILFMFDLTS 183 (215)
Q Consensus 159 e~~~----~~~~---~~~~~a~~iilvfdit~ 183 (215)
.++. .+.. .+++.+|++++|+|.++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 8753 2332 34789999999999986
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.91 E-value=7.5e-10 Score=96.25 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=25.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE 126 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~ 126 (215)
...+|+++|+++||||||++++++.+|.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3579999999999999999999998873
No 197
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.69 E-value=2.2e-11 Score=98.44 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=31.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLI 137 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~ 137 (215)
.+||+++|++|||||||+++|+...+. .+.++++.++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 479999999999999999999988776 44556666654
No 198
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.9e-07 Score=82.06 Aligned_cols=109 Identities=13% Similarity=0.193 Sum_probs=71.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC----Cccch---hhccC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVP---IACKD 171 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~----~~~~~---~~~~~ 171 (215)
..+|.++|.++||||||++++.+.... ..++.+..+.....+.+++ .++++.||+|--+- ..+.. ...+.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 468999999999999999999987655 4555333444445667766 45889999995432 11222 23578
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHC---CCCceEEEEee
Q 028037 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWN---QVTKQSLFFHI 212 (215)
Q Consensus 172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~---~~~~piIlVa~ 212 (215)
+|++++|.|.+++. ........++..+. ...-++++++|
T Consensus 150 ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK 191 (376)
T 4a9a_A 150 CNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKK 191 (376)
T ss_dssp CSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEE
T ss_pred cCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhH
Confidence 99999999999873 33333444444332 12334555554
No 199
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.58 E-value=9.8e-08 Score=84.32 Aligned_cols=84 Identities=14% Similarity=0.198 Sum_probs=60.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCC-C-CccccceeeeEEEEEEECCe---------------EEEEEEEecCCCCC--
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSR-- 160 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f-~-~~~~t~g~~~~~~~v~~~~~---------------~~~l~i~Dt~G~e~-- 160 (215)
..++.++|.+|||||||++.+.+... . ..+|.+..+...-.+.+++. ...+.+||++|...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 57999999999999999999999776 4 45554434444445566542 14689999999543
Q ss_pred -----CCccchhhccCCcEEEEEEeCCC
Q 028037 161 -----SFDHVPIACKDAVAILFMFDLTS 183 (215)
Q Consensus 161 -----~~~~~~~~~~~a~~iilvfdit~ 183 (215)
+......+++.+|+++.|+|..+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22233445689999999999875
No 200
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.38 E-value=3.6e-07 Score=73.10 Aligned_cols=82 Identities=11% Similarity=0.145 Sum_probs=49.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeE------------EEEEEECC------------------eEE
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLI------------NKTLMVQG------------------ARI 148 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~-~~~t~g~~~~------------~~~v~~~~------------------~~~ 148 (215)
..+|+++|.+|||||||++++....+.. ....+..++. ...+.++. ...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 4689999999999999999998653221 1111111110 01111211 235
Q ss_pred EEEEEecCCCCCCCccchhh-ccCCcEEEEEEeCCChh
Q 028037 149 AFSIWDVGGDSRSFDHVPIA-CKDAVAILFMFDLTSRC 185 (215)
Q Consensus 149 ~l~i~Dt~G~e~~~~~~~~~-~~~a~~iilvfdit~~~ 185 (215)
.+.+|||+|+-. .+.+ ....+.+++|+|.++..
T Consensus 110 d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~ 143 (221)
T 2wsm_A 110 DLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGD 143 (221)
T ss_dssp SEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCT
T ss_pred CEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcc
Confidence 788999999621 1112 13578899999988754
No 201
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.37 E-value=6.4e-07 Score=82.32 Aligned_cols=110 Identities=10% Similarity=0.078 Sum_probs=74.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC------------------CCCCccc---cceeeeEEEEEEECCeEEEEEEEecCCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN------------------EQERSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGD 158 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~------------------~f~~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~ 158 (215)
.-+|.|+|-.+.|||||..+++.. .+.++.+ .-|+.+....+.+..+.+.++|.||+|+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 468999999999999999999621 1111111 2244444444444444578999999999
Q ss_pred CCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII 213 (215)
Q Consensus 159 e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~ 213 (215)
..|..-....++-+|++|+|+|..+----+...-|.. +.++ ++| +++|||+
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~~---~lp~i~fINK~ 162 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRMR---ATPVMTFVNKM 162 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECT
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHHh---CCceEEEEecc
Confidence 9999888888999999999999998766666666644 3333 355 5567775
No 202
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.28 E-value=3.2e-07 Score=76.68 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=37.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~ 161 (215)
++++++|.+|||||||++++.+.......++.|.+.....+.++ ..+++|||+|....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLE---NGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECT---TSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeC---CCEEEEECCCcccC
Confidence 79999999999999999999987764333344443332333333 25889999997643
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.22 E-value=3.2e-07 Score=79.71 Aligned_cols=41 Identities=7% Similarity=0.018 Sum_probs=28.5
Q ss_pred EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHH
Q 028037 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI 190 (215)
Q Consensus 147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i 190 (215)
.+.+.||||+|... ........+|++++|+|.+..+.++.+
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l 211 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI 211 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH
Confidence 36789999999433 233345789999999998766554433
No 204
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.21 E-value=3.8e-08 Score=88.63 Aligned_cols=102 Identities=12% Similarity=0.007 Sum_probs=66.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCC--CCccc--------hhh
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHV--------PIA 168 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~--~~~~~--------~~~ 168 (215)
...+|+++|.+|+||||+.+++...-.....++.+++.........+.....++||..|++. +...+ ..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999998543222223333221111111112224457899998743 23332 556
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC
Q 028037 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (215)
Q Consensus 169 ~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~ 201 (215)
+..+++.++|+|.++. +++..+.|++.+++..
T Consensus 118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~ 149 (469)
T 1bif_A 118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG 149 (469)
T ss_dssp HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT
T ss_pred HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC
Confidence 6678899999999998 6888889988887753
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.20 E-value=5.2e-06 Score=78.38 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=74.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC--------C------CCCcc---ccceeeeEEEEEEE--C-----CeEEEEEEEec
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN--------E------QERSL---QMAGLNLINKTLMV--Q-----GARIAFSIWDV 155 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~--------~------f~~~~---~t~g~~~~~~~v~~--~-----~~~~~l~i~Dt 155 (215)
--+|.++|--+.|||||..+++.. + +.++. ..-|+.+....+.+ . ...+.++|.||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 358999999999999999998621 1 11111 11244444333333 2 23689999999
Q ss_pred CCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 156 ~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~ 213 (215)
+|+-.|..-....++-+|++|+|.|...--.-+...-|.+..+..- -++++|||+
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~l---p~i~~iNKi 147 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGV---PRIVYVNKM 147 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTC---CEEEEEECS
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCC---CeEEEEccc
Confidence 9999998888888899999999999998765555556665554422 367777875
No 206
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.06 E-value=5.9e-07 Score=77.97 Aligned_cols=38 Identities=8% Similarity=0.024 Sum_probs=23.9
Q ss_pred EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHH
Q 028037 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 188 (215)
Q Consensus 148 ~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~ 188 (215)
+.+.++||+|.... .......+|++++|+|.++....+
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~ 204 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQ 204 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHH
Confidence 56889999995321 234467899999999998765443
No 207
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.04 E-value=3.5e-06 Score=71.01 Aligned_cols=59 Identities=12% Similarity=0.233 Sum_probs=36.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~ 160 (215)
..++++++|.+|||||||++++.+.......+..|.......+.++. .+.+|||+|-..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence 35899999999999999999999776432222222211111233332 578999999754
No 208
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.01 E-value=1.3e-06 Score=81.56 Aligned_cols=110 Identities=14% Similarity=0.152 Sum_probs=76.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc--CCC------------CCccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCCc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG--NEQ------------ERSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD 163 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~--~~f------------~~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~ 163 (215)
-+|.++|-.+.|||||..+++. +.. .++.+ .-|+.+....+.+.-+...++|.||+|+..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 3689999999999999999962 111 11111 114555555555555567899999999999988
Q ss_pred cchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037 164 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII 213 (215)
Q Consensus 164 ~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~ 213 (215)
.....++-+|++|+|+|..+--.-+...-|.. +.++.- -++++|||+
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~~~l--p~i~~INKm 129 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRKMGI--PTIFFINKI 129 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHHHTC--SCEECCEEC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHHcCC--CeEEEEecc
Confidence 88888899999999999997644444444544 333331 247777875
No 209
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.94 E-value=9.8e-06 Score=66.37 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHh
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~ 121 (215)
.....+++.|.+|||||||++.+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 346889999999999999999997
No 210
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.94 E-value=3.4e-05 Score=73.33 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=25.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQ 125 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f 125 (215)
.....+|+++|+.++|||||++.+++..|
T Consensus 48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 48 DLDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp GGCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 34457999999999999999999999877
No 211
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.89 E-value=2.2e-06 Score=74.01 Aligned_cols=38 Identities=11% Similarity=-0.064 Sum_probs=25.2
Q ss_pred EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhH
Q 028037 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL 187 (215)
Q Consensus 147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf 187 (215)
.+.+.||||+|...... .....+|++++|+|.++.+.+
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~ 185 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDL 185 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHH
Confidence 36799999999665432 246899999999998766543
No 212
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.84 E-value=3.4e-05 Score=65.48 Aligned_cols=53 Identities=6% Similarity=-0.053 Sum_probs=44.4
Q ss_pred CCCCCCccchhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCce-EEEEee
Q 028037 157 GDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQVTKQ-SLFFHI 212 (215)
Q Consensus 157 G~e~~~~~~~~~~~~a~~iilvfdit~~~-Sf~~i~~wl~~i~~~~~~~~p-iIlVa~ 212 (215)
.++++..+.+.++.++|++++|||+++++ ||+.+.+|+..+.. .++| +|+++|
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK 119 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNK 119 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECC
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEc
Confidence 38899999999999999999999999997 99999999998875 3455 555555
No 213
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.59 E-value=6.3e-05 Score=64.83 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028037 100 SLKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~ 121 (215)
...+.++|.+|+|||||++.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999997
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.42 E-value=0.00022 Score=62.12 Aligned_cols=76 Identities=12% Similarity=0.252 Sum_probs=46.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC------CCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc--------c
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN------EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------V 165 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~------~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~--------~ 165 (215)
.+++++|.+|||||||+|++.+. ... ...+ |.......+.++.. +.++||+|-.....+ .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999999975 222 2222 22222223444332 789999996532211 1
Q ss_pred hhhc--cCCcEEEEEEeC
Q 028037 166 PIAC--KDAVAILFMFDL 181 (215)
Q Consensus 166 ~~~~--~~a~~iilvfdi 181 (215)
..++ +..+.++++.|.
T Consensus 238 ~~~~~~~~i~~~~~~l~~ 255 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNE 255 (369)
T ss_dssp HHHSCSSCCCCEEEEECT
T ss_pred HHHhcccccCceEEEEcC
Confidence 1111 556777777765
No 215
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.41 E-value=5.9e-05 Score=61.20 Aligned_cols=57 Identities=7% Similarity=0.096 Sum_probs=35.5
Q ss_pred ecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh---HC--CCCceEEEEe
Q 028037 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK---WN--QVTKQSLFFH 211 (215)
Q Consensus 154 Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~---~~--~~~~piIlVa 211 (215)
|.+||++++.+|..||.++|++|+|.|.+|++-++ .+.-+.++.+ .. -.++|++|.|
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlA 169 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLS 169 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEE
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEe
Confidence 34699999999999999999999999999987654 4443333322 11 1578988887
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.39 E-value=0.00092 Score=59.45 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=35.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCC-ccc--cceeeeEEEEEEE--CCeEEEEEEEecCCCCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQ--MAGLNLINKTLMV--QGARIAFSIWDVGGDSR 160 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~-~~~--t~g~~~~~~~v~~--~~~~~~l~i~Dt~G~e~ 160 (215)
.+++.++|.+|+|||||++.+.+..+.. ... +.+.......+.. .+....+.++|+.|-..
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 4679999999999999999999875431 111 1111111111111 23334789999987543
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.19 E-value=0.0005 Score=59.88 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=35.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC------CCccccceeeeEEEEEEECCeEEEEEEEecCCCCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNEQ------ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~f------~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~ 160 (215)
.+++++|.+|||||||+|++.+... .......|.......+.+++. +.++||+|-..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~ 223 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIIN 223 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCc
Confidence 5799999999999999999987521 111111122222233444332 78999999644
No 218
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.14 E-value=0.00041 Score=64.18 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=39.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc-----cceeeeEEEEEEE-CCeEEEEEEEecCCCCC
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ-----MAGLNLINKTLMV-QGARIAFSIWDVGGDSR 160 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~-----t~g~~~~~~~v~~-~~~~~~l~i~Dt~G~e~ 160 (215)
.....|+++|.++||||||+|++.+.... .... |.|...+ ...+ ......+.++||+|-..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~--~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMW--CVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEE--EEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEe--ecccccCCCceEEEecCCCcCc
Confidence 34688999999999999999999987632 2211 2232211 1111 12335688999999654
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.09 E-value=0.00048 Score=62.59 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=50.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh------cCCCC--C--cc-c-----------cceeeeEEEEEE-------------EC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYV------GNEQE--R--SL-Q-----------MAGLNLINKTLM-------------VQ 144 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~------~~~f~--~--~~-~-----------t~g~~~~~~~v~-------------~~ 144 (215)
...|+++|.+||||||+++++. +.+.. . .+ + ..+.+++..... ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998 32211 1 00 0 011222110000 00
Q ss_pred CeEEEEEEEecCCCCCCCc-cchh---h--ccCCcEEEEEEeCCChhh
Q 028037 145 GARIAFSIWDVGGDSRSFD-HVPI---A--CKDAVAILFMFDLTSRCT 186 (215)
Q Consensus 145 ~~~~~l~i~Dt~G~e~~~~-~~~~---~--~~~a~~iilvfdit~~~S 186 (215)
...+.+.|+||+|...... +... . +..+|.+++|.|.+....
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~ 228 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA 228 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc
Confidence 0346789999999875322 1111 1 237899999999887543
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.93 E-value=0.00047 Score=57.54 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=22.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
.+++.++|++|+|||||++.+++..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999999998643
No 221
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.92 E-value=0.00043 Score=58.72 Aligned_cols=56 Identities=7% Similarity=0.100 Sum_probs=39.7
Q ss_pred cCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHH----HHhHC-CCCceEEEEe
Q 028037 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWN-QVTKQSLFFH 211 (215)
Q Consensus 155 t~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~----i~~~~-~~~~piIlVa 211 (215)
.+||++++.+|..||.++|++|+|.|.+|++-++ .+.-+.+ +.+.. -.++|++|.|
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfA 254 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLS 254 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 4789999999999999999999999999998655 3332222 22211 2578988887
No 222
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.33 E-value=0.002 Score=49.86 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.++++|++|+|||||++.+.+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999875
No 223
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.20 E-value=0.0028 Score=49.42 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
++.++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 224
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.19 E-value=0.0026 Score=50.15 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.++++|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998875
No 225
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.13 E-value=0.0031 Score=49.72 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
|+|+|++|||||||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999753
No 226
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.11 E-value=0.0035 Score=49.91 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=20.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..--++|+|++|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 345689999999999999999884
No 227
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.95 E-value=0.0039 Score=48.41 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028037 103 ISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~ 122 (215)
++++|++|+|||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999884
No 228
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.88 E-value=0.004 Score=47.83 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=16.8
Q ss_pred eEEEEcCCCCCHHHHHHHH
Q 028037 102 KISLLGDCQIGKTSFVVKY 120 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~ 120 (215)
-++++|++|+|||||++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999953
No 229
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.84 E-value=0.0045 Score=49.86 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
--++++|++|+|||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999998764
No 230
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.84 E-value=0.0047 Score=48.14 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-+.++|++|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999998753
No 231
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.84 E-value=0.0054 Score=54.26 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|++|+|||||++.+.+-
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999974
No 232
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.78 E-value=0.0051 Score=48.72 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-|+++|++|+|||||++.+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999854
No 233
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.77 E-value=0.0052 Score=47.37 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-.++++|.+|+|||||++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999764
No 234
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.69 E-value=0.0057 Score=48.28 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-+.++|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999988753
No 235
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.69 E-value=0.0056 Score=48.96 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-.++++|++|+|||||++.+.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36889999999999999988753
No 236
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.67 E-value=0.013 Score=52.28 Aligned_cols=65 Identities=18% Similarity=0.326 Sum_probs=42.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC------------------CCC-C---ccccceeeeEEEEEEE---CCeEEEEE
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVGN------------------EQE-R---SLQMAGLNLINKTLMV---QGARIAFS 151 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~~------------------~f~-~---~~~t~g~~~~~~~v~~---~~~~~~l~ 151 (215)
+..-.-|.|+|..++|||+|+|++++. .|. . ...|.|+-.....+.. ++....+-
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEE
Confidence 334567889999999999999999852 333 1 1114454333211111 45678899
Q ss_pred EEecCCCCCC
Q 028037 152 IWDVGGDSRS 161 (215)
Q Consensus 152 i~Dt~G~e~~ 161 (215)
+.||.|-...
T Consensus 144 llDTeG~~~~ 153 (447)
T 3q5d_A 144 LMDTQGTFDS 153 (447)
T ss_dssp EEEEECCCSS
T ss_pred EEcCCccccc
Confidence 9999996543
No 237
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.60 E-value=0.0066 Score=47.72 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-|+++|.+|+|||||++.+..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 238
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.53 E-value=0.013 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028037 100 SLKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~ 121 (215)
...|+++|.+||||||++..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHH
Confidence 4689999999999999998886
No 239
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.46 E-value=0.0079 Score=45.26 Aligned_cols=21 Identities=24% Similarity=0.048 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.|++.|.+|+||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 240
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.38 E-value=0.0089 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
.+.++|+.|+|||||++-+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999988654
No 241
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.36 E-value=0.0084 Score=47.31 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|.|+|++|+|||||++.+.+
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999987753
No 242
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.34 E-value=0.0096 Score=44.56 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=18.0
Q ss_pred eEEEEcCCCCCHHHHHHHH
Q 028037 102 KISLLGDCQIGKTSFVVKY 120 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~ 120 (215)
-|++.|.+|+||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 243
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.33 E-value=0.0091 Score=46.43 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
..++++|.+|+||||+++.+.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998764
No 244
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.31 E-value=0.0098 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988753
No 245
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.26 E-value=0.01 Score=44.93 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 246
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.23 E-value=0.01 Score=45.73 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-++++|.+|+|||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999874
No 247
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.20 E-value=0.012 Score=45.07 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|++.|.+|+||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998754
No 248
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.19 E-value=0.011 Score=44.67 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|+++|.+|+||||+.+.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 249
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.17 E-value=0.0092 Score=45.73 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-.++++|++|+|||+|++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988643
No 250
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.16 E-value=0.014 Score=45.48 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
....|+|.|.+|+||||+.+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
No 251
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.12 E-value=0.012 Score=46.32 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
++.++|+.|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 588999999999999998775
No 252
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.09 E-value=0.013 Score=44.61 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-|++.|.+|+||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 253
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.08 E-value=0.013 Score=46.87 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028037 102 KISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~ 121 (215)
-+.++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999999887
No 254
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.08 E-value=0.013 Score=45.77 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.|+++|.+|+||||+.+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 255
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.05 E-value=0.013 Score=45.92 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=19.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-.|+++|.+|+|||||++.+.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 256
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.03 E-value=0.013 Score=45.82 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|+|+|.+|+||||+.+.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 257
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.03 E-value=0.014 Score=46.01 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
+|+|.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998853
No 258
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.03 E-value=0.013 Score=47.67 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|++|+|||||++-+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999988754
No 259
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.03 E-value=0.014 Score=47.14 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028037 101 LKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~ 121 (215)
-.|+++|.+|+|||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999988
No 260
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.01 E-value=0.013 Score=50.84 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQ 125 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f 125 (215)
.++++|.+|||||||++.+.+..-
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999997654
No 261
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.00 E-value=0.014 Score=45.08 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998864
No 262
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.00 E-value=0.018 Score=43.77 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|+++|.+|+||||+.+.+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998763
No 263
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.99 E-value=0.014 Score=45.96 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
+|+|.|.+|+||||+...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998853
No 264
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.99 E-value=0.013 Score=44.74 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.|++.|.+|+||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998764
No 265
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.98 E-value=0.014 Score=45.37 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.-++++|.+|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999998853
No 266
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.92 E-value=0.013 Score=46.24 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
--+.++|++|+|||||++.+..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999986
No 267
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.81 E-value=0.015 Score=46.89 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 268
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.79 E-value=0.019 Score=43.93 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|++.|.+|+||||+...+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988753
No 269
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.77 E-value=0.018 Score=44.06 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|+++|.+|+||||+...+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998853
No 270
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.76 E-value=0.018 Score=47.03 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998865
No 271
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.75 E-value=0.02 Score=44.46 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|++.|.+|+||||+.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 272
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.73 E-value=0.017 Score=45.31 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|.++|+.|+|||||++.+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998765
No 273
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.72 E-value=0.017 Score=47.69 Aligned_cols=22 Identities=27% Similarity=0.307 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-+.++|++|+|||||++-+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 274
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.71 E-value=0.017 Score=45.10 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=19.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..-|+++|.+|+||||+.+.+.+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999987763
No 275
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.68 E-value=0.011 Score=47.23 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=14.8
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028037 102 KISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~ 121 (215)
-+.++|++|+|||||++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999998
No 276
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.67 E-value=0.018 Score=47.61 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.++++|++|+|||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999998874
No 277
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.66 E-value=0.054 Score=48.42 Aligned_cols=61 Identities=16% Similarity=0.322 Sum_probs=41.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHH---h---------------cCCCC-C---ccccceeeeEEEEEEE---CCeEEEEEEEe
Q 028037 100 SLKISLLGDCQIGKTSFVVKY---V---------------GNEQE-R---SLQMAGLNLINKTLMV---QGARIAFSIWD 154 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~---~---------------~~~f~-~---~~~t~g~~~~~~~v~~---~~~~~~l~i~D 154 (215)
-.=|.|+|..++|||+|++.+ . ...|. . ...|.|+-.....+.+ +|....+-+.|
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllD 146 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEE
T ss_pred eEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEe
Confidence 345569999999999999954 3 23444 1 1226676655433322 67788999999
Q ss_pred cCCCCC
Q 028037 155 VGGDSR 160 (215)
Q Consensus 155 t~G~e~ 160 (215)
|.|...
T Consensus 147 TEG~~d 152 (457)
T 4ido_A 147 TQGTFD 152 (457)
T ss_dssp ECCBTC
T ss_pred ccCCCC
Confidence 999654
No 278
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.66 E-value=0.014 Score=44.02 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-.+++.|++|+|||+|+..+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999988643
No 279
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.65 E-value=0.019 Score=46.63 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998754
No 280
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.65 E-value=0.018 Score=44.80 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+|.++|..|+||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998875
No 281
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.63 E-value=0.018 Score=48.41 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028037 101 LKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~ 121 (215)
.-+.++|++|+|||||++.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 367999999999999999998
No 282
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.63 E-value=0.019 Score=46.91 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|++|+|||||++-+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998765
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.61 E-value=0.02 Score=46.59 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|++|+|||||++-+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998754
No 284
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.61 E-value=0.017 Score=48.53 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNEQ 125 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~f 125 (215)
.+.++|++|+|||||++.+.+..-
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 678999999999999999986543
No 285
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.61 E-value=0.018 Score=44.23 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|++.|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998864
No 286
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.60 E-value=0.019 Score=46.01 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 287
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.59 E-value=0.026 Score=43.16 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|++.|.+|+||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 288
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.58 E-value=0.019 Score=47.87 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988764
No 289
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.54 E-value=0.02 Score=47.12 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 290
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.50 E-value=0.022 Score=44.97 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+|.++|.+|+||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 291
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.47 E-value=0.022 Score=44.69 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999873
No 292
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.47 E-value=0.021 Score=47.25 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999988754
No 293
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.46 E-value=0.023 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 294
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.46 E-value=0.021 Score=47.29 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|++|+|||||++-+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998864
No 295
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.44 E-value=0.023 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 296
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.43 E-value=0.022 Score=46.36 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 297
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.42 E-value=0.022 Score=46.73 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998754
No 298
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.42 E-value=0.023 Score=46.99 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 299
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.42 E-value=0.022 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-.+++.|++|+|||+|+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 300
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.42 E-value=0.024 Score=49.13 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHh
Q 028037 98 LVSLKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 98 ~~~~KIvllGd~~vGKTSLi~r~~ 121 (215)
....||+++|.+|+|||||++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 346899999999999999999863
No 301
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.42 E-value=0.028 Score=43.34 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
...|+++|.+|+||||+.+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999988754
No 302
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.41 E-value=0.03 Score=42.69 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028037 100 SLKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~ 121 (215)
...|++.|.+|+||||+.+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3569999999999999999886
No 303
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.37 E-value=0.022 Score=47.24 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|++|+|||||++-+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 304
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.36 E-value=0.024 Score=46.70 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999998864
No 305
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.35 E-value=0.023 Score=44.83 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 306
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.34 E-value=0.019 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-|+.++|++|+|||||++.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998864
No 307
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.33 E-value=0.024 Score=45.88 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
++++|++|+|||+|++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999988753
No 308
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.33 E-value=0.037 Score=42.98 Aligned_cols=21 Identities=33% Similarity=0.276 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028037 101 LKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~ 121 (215)
..|++.|.+|+||||+...+.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999998886
No 309
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.32 E-value=0.027 Score=45.66 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..+|++.|.+|+||||+..++..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 310
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.32 E-value=0.024 Score=46.72 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 311
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.31 E-value=0.026 Score=44.97 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.|+++|++|+||+|...++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988864
No 312
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.31 E-value=0.025 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999988764
No 313
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.31 E-value=0.024 Score=44.21 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-+++.|++|+|||+|+..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998864
No 314
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.30 E-value=0.025 Score=43.69 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028037 103 ISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~ 122 (215)
+++.|++|+|||+|+..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998874
No 315
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.27 E-value=0.025 Score=48.01 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.+.|+|++|+|||||++.+.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3789999999999999998773
No 316
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.26 E-value=0.026 Score=42.90 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
+|+++|.+|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988753
No 317
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.26 E-value=0.031 Score=43.63 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
+.|.++|.+|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 318
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.25 E-value=0.028 Score=44.47 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|+++|.+|+||||+...+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 319
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.23 E-value=0.0079 Score=51.12 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
-.++++|.+|||||||++.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998653
No 320
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.22 E-value=0.019 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998865
No 321
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.21 E-value=0.012 Score=45.58 Aligned_cols=21 Identities=24% Similarity=0.551 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+.++|++|+|||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998874
No 322
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.17 E-value=0.026 Score=46.33 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 323
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.17 E-value=0.031 Score=43.24 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
...|++.|.+|+||||+.+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998864
No 324
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.15 E-value=0.027 Score=46.58 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998754
No 325
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.12 E-value=0.03 Score=43.80 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-++++|++|+|||+|+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999986
No 326
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.07 E-value=0.019 Score=43.13 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.+.++|++|+|||+|++.+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998875
No 327
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.07 E-value=0.031 Score=46.26 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
.+.++|+.|+|||||++-+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 328
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.06 E-value=0.028 Score=47.69 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..-|.|+|++|+|||||++.+.+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHh
Confidence 56789999999999999998764
No 329
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.06 E-value=0.028 Score=47.55 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028037 101 LKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~ 121 (215)
-.+.++|++|+||||++..+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 478899999999999999886
No 330
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.04 E-value=0.042 Score=42.79 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|++.|.+|+||||+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 331
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.03 E-value=0.031 Score=44.46 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|+|.|.+|+||||+.+.+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 332
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.01 E-value=0.032 Score=44.30 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-+.++|++|+|||+|+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999863
No 333
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.01 E-value=0.035 Score=46.30 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-|++.|.+|+||||+...+..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999864
No 334
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.99 E-value=0.028 Score=44.53 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|+|+|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 335
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.98 E-value=0.044 Score=42.07 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|++.|.+|+||||+...+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 336
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.97 E-value=0.035 Score=43.00 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-+.++|.+|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998874
No 337
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.95 E-value=0.036 Score=41.58 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 338
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.95 E-value=0.032 Score=43.32 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999988764
No 339
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.91 E-value=0.033 Score=42.80 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 340
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.91 E-value=0.045 Score=42.76 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
...|.++|.+|+||||+.+.+.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998764
No 341
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.89 E-value=0.012 Score=46.00 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-|+|.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998863
No 342
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.89 E-value=0.032 Score=45.55 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-|+++|.+|+|||||...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998863
No 343
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.88 E-value=0.032 Score=46.26 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028037 103 ISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~ 122 (215)
++++|++|+|||+|++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999998875
No 344
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.87 E-value=0.036 Score=44.20 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.|+|.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 345
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.83 E-value=0.039 Score=44.20 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|+|+|.+|+||||+.+.+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 346
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.82 E-value=0.033 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
--+.++|+.|+||||++..+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998864
No 347
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.81 E-value=0.032 Score=48.41 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
-+.++|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999988653
No 348
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.80 E-value=0.037 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
..-|.+.|..|+|||||++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 467999999999999999988753
No 349
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.77 E-value=0.035 Score=45.65 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
++++|++|+|||+|++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999988753
No 350
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.73 E-value=0.049 Score=41.48 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|++.|.+|+||||+...+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 351
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.72 E-value=0.035 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.--++++|++|+||||++..+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 352
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.71 E-value=0.04 Score=42.07 Aligned_cols=21 Identities=29% Similarity=0.159 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 353
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.70 E-value=0.032 Score=46.22 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-++++|++|+|||||+..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 578999999999999998864
No 354
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.70 E-value=0.037 Score=44.80 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+++.|++|+|||+|++.+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 499999999999999998874
No 355
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.69 E-value=0.037 Score=47.89 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
-+.++|++|+|||||++-+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988653
No 356
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.67 E-value=0.036 Score=46.54 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999988754
No 357
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.66 E-value=0.036 Score=42.52 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|++.|.+|+||||+...+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 358
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.64 E-value=0.039 Score=47.86 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-+.++|++|+|||||++-+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999998865
No 359
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.63 E-value=0.043 Score=44.48 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+.|.|.|.+|+||||+...+..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998864
No 360
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.63 E-value=0.04 Score=42.90 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|++.|.+|+||||+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 361
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.61 E-value=0.04 Score=42.36 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|++.|.+|+||||+...+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988864
No 362
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.61 E-value=0.039 Score=47.80 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-+.++|++|+|||||++-+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999998865
No 363
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.59 E-value=0.043 Score=41.27 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.|++.|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 364
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.57 E-value=0.039 Score=44.55 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|.++|+.|+|||||++.+.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998865
No 365
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.57 E-value=0.053 Score=45.45 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=19.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028037 100 SLKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~ 121 (215)
...|.|.|.+|+|||||++.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999998654
No 366
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.57 E-value=0.038 Score=46.92 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.++++|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999998875
No 367
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.55 E-value=0.039 Score=43.21 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|.++|.+|+|||||++.+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 368
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.54 E-value=0.041 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
-+.++|++|+|||||++-+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999988653
No 369
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.51 E-value=0.042 Score=47.84 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-+.++|++|+|||||++-+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999998865
No 370
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.50 E-value=0.039 Score=47.71 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.++++|++|+|||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998864
No 371
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.49 E-value=0.042 Score=43.46 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+|+++|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 372
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.47 E-value=0.043 Score=47.76 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-+.++|++|+|||||++-+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5789999999999999998865
No 373
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.45 E-value=0.028 Score=47.67 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|++|+|||||++-+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999988753
No 374
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.39 E-value=0.05 Score=41.94 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
...|.+.|.+|+||||+.+.+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999998764
No 375
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.37 E-value=0.044 Score=45.73 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-++|.|+.|+|||+|+..+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999999754
No 376
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.35 E-value=0.081 Score=48.45 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
++.++|++|+|||||++-+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999998754
No 377
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.34 E-value=0.045 Score=43.45 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-+++.|++|+|||+|+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999888863
No 378
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.33 E-value=0.046 Score=44.69 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|++.|.+|+||||+...+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998874
No 379
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.33 E-value=0.089 Score=38.86 Aligned_cols=23 Identities=13% Similarity=0.041 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
..|++.|++|+|||++.+.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 45999999999999999988754
No 380
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.32 E-value=0.068 Score=39.46 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=18.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|++.|++|+|||++++.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 3599999999999999887654
No 381
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.32 E-value=0.044 Score=44.84 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+++.|++|+|||+|++.+..
T Consensus 53 ~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 599999999999999999874
No 382
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.32 E-value=0.047 Score=43.91 Aligned_cols=22 Identities=27% Similarity=0.164 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.+++.|++|+|||+|++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998874
No 383
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.30 E-value=0.048 Score=41.53 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.+++|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998753
No 384
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.30 E-value=0.042 Score=47.41 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-.++++|++|+|||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999854
No 385
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.30 E-value=0.048 Score=41.65 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.|++.|.+|+||||+...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988754
No 386
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=93.28 E-value=0.053 Score=47.71 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.2
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHh
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~ 121 (215)
....+|++++|.+++||||+++++.
T Consensus 37 ~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 37 YRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp CTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hhccceEEEecCCCCchhhHHHHHH
Confidence 3557999999999999999999875
No 387
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.27 E-value=0.033 Score=42.30 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=15.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|++.|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998863
No 388
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.24 E-value=0.044 Score=47.52 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.++++|++|+|||||++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998875
No 389
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.24 E-value=0.05 Score=47.31 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-+.++|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4789999999999999988864
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.21 E-value=0.053 Score=41.31 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|++.|.+|+||||+.+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998865
No 391
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.19 E-value=0.044 Score=46.28 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
--+++.|++|+|||+|++.+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 392
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.16 E-value=0.051 Score=44.18 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|+++|.+|+||||+...+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998764
No 393
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.15 E-value=0.045 Score=45.73 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-++|.|+.|+|||+|+..+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999998753
No 394
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.10 E-value=0.049 Score=44.88 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..+++.|++|+|||+|++.+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 395
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.04 E-value=0.049 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|.|+|.+|+|||||++.+.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998765
No 396
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.02 E-value=0.052 Score=47.03 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.--+.++|..|+||||++..+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 35788999999999999998764
No 397
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.97 E-value=0.051 Score=47.57 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999988753
No 398
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.97 E-value=0.037 Score=47.78 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-+.++|++|+|||||++-+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5789999999999999998865
No 399
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.97 E-value=0.064 Score=43.66 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028037 100 SLKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~ 121 (215)
...|.++|.+|+||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999887
No 400
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.94 E-value=0.058 Score=42.39 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-|+++|.+|+||||+.+.+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998763
No 401
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.93 E-value=0.073 Score=43.98 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=18.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028037 100 SLKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~ 121 (215)
...+++.|++|+|||+++..+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999998554
No 402
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.91 E-value=0.059 Score=43.39 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..-|++.|.+|+||||+++.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 403
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.88 E-value=0.18 Score=44.26 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..-|+++|.+|+||||+.+++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999875
No 404
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.88 E-value=0.058 Score=44.36 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+++.|++|+|||++++.+..
T Consensus 52 ~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 405
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.87 E-value=0.056 Score=46.53 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
++.++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 88999999999999999988663
No 406
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.85 E-value=0.056 Score=45.31 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999998874
No 407
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.84 E-value=0.056 Score=48.91 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.--+.|+|.+|+|||||+..+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 35688999999999999998763
No 408
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.84 E-value=0.057 Score=44.42 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
--++++|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999999874
No 409
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.80 E-value=0.078 Score=45.18 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028037 100 SLKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~ 121 (215)
.+-|.++|++|+|||||++.+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999998874
No 410
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.78 E-value=0.05 Score=46.42 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.++++|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999988854
No 411
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=92.73 E-value=0.043 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGNE 124 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~~ 124 (215)
.++++|++|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998764
No 412
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.70 E-value=0.062 Score=45.64 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+++.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988754
No 413
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.65 E-value=0.078 Score=41.69 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+.|++.|.+|+||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998875
No 414
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.65 E-value=0.094 Score=42.11 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=18.7
Q ss_pred eeeeE-EEEcCCCCCHHHHHHHHhc
Q 028037 99 VSLKI-SLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 99 ~~~KI-vllGd~~vGKTSLi~r~~~ 122 (215)
...|| +++|++|+||+|...++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34454 5689999999999888764
No 415
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.64 E-value=0.66 Score=36.30 Aligned_cols=52 Identities=6% Similarity=0.021 Sum_probs=37.1
Q ss_pred EEEEEEEecCCC-CCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC
Q 028037 147 RIAFSIWDVGGD-SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (215)
Q Consensus 147 ~~~l~i~Dt~G~-e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~ 201 (215)
.+.+-|.|+++. ... .....+..+|.+|++... +..++..+...++.+++..
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~ 119 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG 119 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc
Confidence 467889999886 432 334456789999988874 5667888888887777643
No 416
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.57 E-value=0.068 Score=44.18 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-|++.|.+|+||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999885
No 417
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.56 E-value=0.068 Score=43.63 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...+++.|++|+|||+|+..+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999998875
No 418
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.55 E-value=0.067 Score=43.86 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.|+++|.+|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 419
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.54 E-value=0.049 Score=46.02 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-++++|..|+|||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999965
No 420
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.51 E-value=0.064 Score=47.36 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-++++|+.|+|||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998753
No 421
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.49 E-value=0.072 Score=42.54 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
...|+++|++|+|||+|...+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999999854
No 422
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.49 E-value=0.064 Score=44.70 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-+++.|++|+|||+|++.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3567779999999999998874
No 423
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.43 E-value=0.24 Score=38.07 Aligned_cols=51 Identities=14% Similarity=-0.000 Sum_probs=35.4
Q ss_pred EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC
Q 028037 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (215)
Q Consensus 147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~ 201 (215)
.+.+-|.|+++.. .......+..+|.++++...+.. + ..+...++.+++..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~ 125 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQ 125 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHH
Confidence 3678899999765 33444556779999999876544 3 66777777666543
No 424
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.40 E-value=0.037 Score=47.82 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-+.++|++|+|||||++-+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998865
No 425
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=92.38 E-value=0.037 Score=47.94 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=38.9
Q ss_pred CCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE-ee
Q 028037 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF-HI 212 (215)
Q Consensus 157 G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV-a~ 212 (215)
.+++|..+...++++++++++|+|++|.+ ..|.+++.++.. +.|+++| +|
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK 105 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNK 105 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEEC
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEC
Confidence 46788899999999999999999999853 578888888764 5665554 44
No 426
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.30 E-value=0.073 Score=44.38 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.+++.|++|+|||+|++.+.+
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 3589999999999999998875
No 427
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.27 E-value=0.091 Score=42.66 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028037 100 SLKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~ 121 (215)
.+||++.|.+|||||+++..+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHH
Confidence 6899999999999999976554
No 428
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.27 E-value=0.12 Score=47.53 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
++.++|++|+|||||++-+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7899999999999999988754
No 429
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.27 E-value=0.065 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.+++.|++|+|||+|++.+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
No 430
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.26 E-value=0.073 Score=47.28 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
++.++|++|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999988865
No 431
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.24 E-value=0.11 Score=42.90 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999988753
No 432
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.20 E-value=0.096 Score=39.33 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.|++.|.+|+||||+.+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998854
No 433
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.18 E-value=0.069 Score=47.74 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|+.|+|||||++-+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 7899999999999999988754
No 434
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.15 E-value=0.065 Score=45.18 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028037 103 ISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~ 122 (215)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998875
No 435
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.06 E-value=0.078 Score=48.05 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.++++|+.|+|||||++.+.+-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999998753
No 436
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.04 E-value=0.1 Score=47.77 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+.++|++|+|||||++-+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7899999999999999876643
No 437
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.01 E-value=0.084 Score=44.28 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988743
No 438
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.01 E-value=0.099 Score=41.82 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=21.5
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhc
Q 028037 97 DLVSLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 97 ~~~~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
......|.++|.+|+||||+...+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999998874
No 439
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.95 E-value=0.084 Score=44.61 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
+++.|++|+|||+++..+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988753
No 440
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.94 E-value=0.081 Score=44.42 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=18.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028037 101 LKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~ 121 (215)
-.++++|..|+||||++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478899999999999999875
No 441
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.93 E-value=0.079 Score=44.90 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.+++.|++|+|||+|+..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 442
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.93 E-value=0.1 Score=42.43 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028037 100 SLKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~ 121 (215)
.+.|.+.|++|+||||+.+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999886
No 443
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.89 E-value=0.1 Score=41.42 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028037 102 KISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~ 121 (215)
=+++.|++|+|||+|+.+++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999999876
No 444
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.73 E-value=0.088 Score=44.72 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-+++.|++|+|||+|++.+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 445
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.71 E-value=0.096 Score=43.95 Aligned_cols=21 Identities=24% Similarity=0.263 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+++.|++|+|||+|++.+..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 446
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.71 E-value=0.088 Score=46.91 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.++++|++|+|||+++..+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998764
No 447
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.67 E-value=0.11 Score=44.69 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-|+|+|++|+|||+|...+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 448
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.66 E-value=0.12 Score=38.69 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028037 103 ISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~ 121 (215)
.+++|+.|+|||+|+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999865
No 449
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.58 E-value=0.097 Score=44.22 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-.+++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999998853
No 450
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.48 E-value=0.049 Score=44.19 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028037 103 ISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~ 122 (215)
+++.|++|+|||+|++.+..
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999998874
No 451
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.46 E-value=0.1 Score=43.88 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...+++.|++|+|||+|++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34699999999999999998874
No 452
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.45 E-value=0.074 Score=43.30 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|+|.|..|+||||+++.+..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988764
No 453
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.43 E-value=0.11 Score=42.09 Aligned_cols=23 Identities=13% Similarity=0.158 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
..+++.|++|+|||+|++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999999999988754
No 454
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.40 E-value=0.1 Score=47.81 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
++.++|++|+|||||++-+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7899999999999999988754
No 455
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.35 E-value=0.12 Score=42.75 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+.|+|.|.+|+||||+.+.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998863
No 456
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.30 E-value=0.11 Score=43.78 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=18.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028037 101 LKISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~ 121 (215)
--++++|.+|+||||++..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 468899999999999999876
No 457
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.23 E-value=0.11 Score=44.57 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
--+.++|++|+|||+|+..+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999864
No 458
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.23 E-value=0.12 Score=44.21 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|+++|++|+|||+|...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 459
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.19 E-value=0.12 Score=44.37 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..+++.|++|+|||+++..+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
No 460
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.18 E-value=0.13 Score=40.14 Aligned_cols=23 Identities=17% Similarity=0.524 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.=+++.|++|+||||+...+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46899999999999999998764
No 461
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.14 E-value=0.12 Score=45.09 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998874
No 462
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.09 E-value=0.13 Score=46.78 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
=.+.++|+.|+|||||++-+.+-
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998864
No 463
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.03 E-value=0.15 Score=43.50 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-|+|.|++|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999753
No 464
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.00 E-value=0.12 Score=44.35 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-|+|.|++|+|||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998874
No 465
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.97 E-value=0.13 Score=43.17 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
.-.+++.|++|+|||.|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988764
No 466
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.93 E-value=0.13 Score=43.77 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-|+++|++|+|||+|...+..
T Consensus 12 ~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 478999999999999999874
No 467
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=90.90 E-value=0.14 Score=46.42 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-|+|.|.+|+|||+|+..+...
T Consensus 149 ~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEcCCCCCHHHHHHHHHhc
Confidence 4889999999999999998754
No 468
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.88 E-value=0.13 Score=46.38 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-+.++|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998864
No 469
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.85 E-value=0.12 Score=45.26 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028037 102 KISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~ 121 (215)
-+.|+|++|+|||+|+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 58899999999999999886
No 470
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.84 E-value=0.09 Score=43.65 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..+++.|++|+|||+|+..+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998864
No 471
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.83 E-value=0.1 Score=41.92 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+++.|++|+|||+++..+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999887763
No 472
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.72 E-value=0.13 Score=43.90 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...+++.|++|+|||+|++.+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999874
No 473
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.70 E-value=0.14 Score=42.23 Aligned_cols=22 Identities=18% Similarity=0.304 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
.+++.|++|+|||+++..+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3999999999999999988753
No 474
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.68 E-value=0.13 Score=46.51 Aligned_cols=19 Identities=26% Similarity=0.523 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028037 103 ISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~ 121 (215)
++++|++|+|||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 475
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.68 E-value=0.12 Score=51.95 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
||.++|.+|+|||||++-+..
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 889999999999999998874
No 476
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.62 E-value=0.092 Score=44.05 Aligned_cols=21 Identities=29% Similarity=0.124 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+++.|++|+|||+|++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 699999999999999998864
No 477
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.61 E-value=0.16 Score=39.60 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
++++|.+++|||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 478
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.59 E-value=0.14 Score=43.85 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|++.|++|+|||+|++.+..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998874
No 479
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.52 E-value=0.15 Score=43.56 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..+++.|++|+|||++++.+..
T Consensus 52 ~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988763
No 480
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.51 E-value=0.16 Score=39.21 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.|.+.|.+|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998864
No 481
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.51 E-value=0.15 Score=43.08 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 482
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.45 E-value=0.16 Score=39.71 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028037 100 SLKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 100 ~~KIvllGd~~vGKTSLi~r~~~ 122 (215)
...|.+.|.+|+||||+...+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988764
No 483
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.42 E-value=0.11 Score=47.72 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
++.++|++|+|||||++-+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988754
No 484
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.30 E-value=0.15 Score=45.11 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
--+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998874
No 485
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.27 E-value=0.12 Score=44.22 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=18.2
Q ss_pred eEEE--EcCCCCCHHHHHHHHhcC
Q 028037 102 KISL--LGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvl--lGd~~vGKTSLi~r~~~~ 123 (215)
-+++ .|++|+|||+|++.+...
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHH
Confidence 4566 799999999999988743
No 486
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.19 E-value=0.17 Score=43.59 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028037 103 ISLLGDCQIGKTSFVVKYV 121 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~ 121 (215)
.+++|+.|+|||||+..+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999875
No 487
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.18 E-value=0.16 Score=41.76 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028037 103 ISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~~ 123 (215)
+++.|++|+|||+++..+...
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 999999999999999988743
No 488
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.14 E-value=0.16 Score=43.85 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..++|.|++|+|||+|++.+..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 489
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.11 E-value=0.15 Score=46.31 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
--++++|++|+|||+|++.+.+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998763
No 490
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.08 E-value=0.16 Score=45.10 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
-.++|.|++|+|||+|++.+..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 3689999999999999998874
No 491
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.05 E-value=0.17 Score=41.61 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028037 103 ISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 103 IvllGd~~vGKTSLi~r~~~ 122 (215)
+++.|++|+|||+++..+..
T Consensus 41 ~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHH
Confidence 89999999999999998864
No 492
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.04 E-value=0.19 Score=40.22 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028037 101 LKISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~ 122 (215)
..|++-|..|+||||+++.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
No 493
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.01 E-value=0.22 Score=38.96 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC
Q 028037 99 VSLKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 99 ~~~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
..+.|.+.|..|+||||+.+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999988753
No 494
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.00 E-value=0.17 Score=46.75 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028037 101 LKISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 101 ~KIvllGd~~vGKTSLi~r~~~~ 123 (215)
=.+.++|+.|+|||||++-+.+-
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 36899999999999999998864
No 495
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.97 E-value=0.17 Score=44.81 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
-|++.|++|+|||+|++.+.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999874
No 496
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.94 E-value=0.17 Score=46.09 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
-+.++|+.|+|||||++-+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998864
No 497
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=89.92 E-value=0.063 Score=46.46 Aligned_cols=50 Identities=6% Similarity=0.094 Sum_probs=38.2
Q ss_pred CCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE-ee
Q 028037 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF-HI 212 (215)
Q Consensus 157 G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV-a~ 212 (215)
.++.|......++.+++++++|+|++|.++ .|.+++.++.. +.|+++| +|
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK 107 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNK 107 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEEC
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEC
Confidence 578899999999999999999999999874 57777777664 5666555 54
No 498
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.92 E-value=0.19 Score=45.13 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028037 102 KISLLGDCQIGKTSFVVKYVGN 123 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~~ 123 (215)
+++++|++|+|||+|++.+..+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh
Confidence 7999999999999999988643
No 499
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=89.91 E-value=0.094 Score=44.00 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
.+++.|++|+|||+|++.+..
T Consensus 47 ~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 499999999999999998874
No 500
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.85 E-value=0.24 Score=49.77 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028037 102 KISLLGDCQIGKTSFVVKYVG 122 (215)
Q Consensus 102 KIvllGd~~vGKTSLi~r~~~ 122 (215)
++.++|++|+|||||++-+.+
T Consensus 446 ~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTT
T ss_pred EEEEEecCCCcHHHHHHHhcc
Confidence 789999999999999988774
Done!