BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028038
MAAISSTTATVCISQKNFYTPSPKRNSLLSHSINSYFPTRPRKQLTVRNTGDVSAETGST
EIEPEARSDPSSLISALNVERALRGIAITDADHYGRLELRRGCSFDEVALAYKNKLEGLK
DQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSLARTENPDRYVWPFEVDVTQTPKGT
PPPQEPEDVGPTRLVGYFMLGWLILSFVLSIALNR

High Scoring Gene Products

Symbol, full name Information P value
NdhU
NADH dehydrogenase-like complex U 		protein from Arabidopsis thaliana 1.4e-41

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028038
        (215 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1005716171 - symbol:NdhU "NADH dehydrogenase-l...   441  1.4e-41   1


>TAIR|locus:1005716171 [details] [associations]
            symbol:NdhU "NADH dehydrogenase-like complex U"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0031072 "heat shock protein binding"
            evidence=IEA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] InterPro:IPR001623 EMBL:CP002688
            GenomeReviews:BA000015_GR EMBL:AC140977 GO:GO:0009535
            Gene3D:1.10.287.110 SMART:SM00271 SUPFAM:SSF46565 IPI:IPI00520191
            RefSeq:NP_850862.1 UniGene:At.44750 ProteinModelPortal:Q84VQ4
            SMR:Q84VQ4 PRIDE:Q84VQ4 EnsemblPlants:AT5G21430.1 GeneID:832247
            KEGG:ath:AT5G21430 TAIR:At5g21430 HOGENOM:HOG000085214
            InParanoid:Q84VQ4 OMA:DVDHYGR PhylomeDB:Q84VQ4
            ProtClustDB:CLSN2680145 Genevestigator:Q84VQ4 Uniprot:Q84VQ4
        Length = 218

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 93/200 (46%), Positives = 122/200 (61%)

Query:    27 SLLSHSINSY-FPTRPR---KQLT---VRNTGDVSAET----GSTEIEPEARSDPSSLIS 75
             S+L H  ++  FP +P    K++     RN+ +VSAE     GS+    EA  +  SLIS
Sbjct:    19 SVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAEAETEGGSSTAVDEAPKESPSLIS 78

Query:    76 ALNVERALRGIAITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDXXXXXXXXXX 135
             ALNVERALRG+ ITD DHYGRL + R CS+D+V + YK +++ LK+QGLD          
Sbjct:    79 ALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKERVKELKEQGLDEEQLKTKMDL 138

Query:   136 XXXXXXXXXXXXXXXXXDWSLARTENPDRYVWPFEVDVTQTPKGTPPPQEPEDVGPTRLV 195
                              DWSLAR+E  +RYVWPFEVD+ +  +  PPPQEPEDVGPTR++
Sbjct:   139 IKESYTILSTVEERRMYDWSLARSEKAERYVWPFEVDIMEPSREEPPPQEPEDVGPTRIL 198

Query:   196 GYFMLGWLILSFVLSIALNR 215
             GYF+  WL+L   LS+A NR
Sbjct:   199 GYFIGAWLVLGVALSVAFNR 218


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      215       188   0.00087  110 3  11 22  0.49    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  160 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.16u 0.14s 19.30t   Elapsed:  00:00:01
  Total cpu time:  19.16u 0.14s 19.30t   Elapsed:  00:00:01
  Start:  Tue May 21 03:49:02 2013   End:  Tue May 21 03:49:03 2013

Back to top