Query 028038
Match_columns 215
No_of_seqs 299 out of 1593
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:17:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 1.9E-24 4.2E-29 195.4 7.3 72 89-160 2-74 (371)
2 KOG0713 Molecular chaperone (D 99.9 2.2E-22 4.7E-27 178.7 7.3 69 88-156 13-82 (336)
3 PRK14288 chaperone protein Dna 99.8 1.8E-20 3.8E-25 171.0 7.4 66 91-156 3-69 (369)
4 PRK14296 chaperone protein Dna 99.8 1.9E-20 4.1E-25 171.0 7.2 66 90-155 3-68 (372)
5 KOG0712 Molecular chaperone (D 99.8 1.3E-19 2.9E-24 162.1 7.3 68 89-158 2-69 (337)
6 PRK14279 chaperone protein Dna 99.8 1.2E-19 2.6E-24 166.7 7.1 67 90-156 8-75 (392)
7 PRK14286 chaperone protein Dna 99.8 3.1E-19 6.7E-24 163.0 7.6 66 90-155 3-69 (372)
8 PRK14287 chaperone protein Dna 99.8 3.9E-19 8.5E-24 162.3 7.6 67 90-156 3-69 (371)
9 PRK14299 chaperone protein Dna 99.8 5.3E-19 1.2E-23 156.6 7.5 67 90-156 3-69 (291)
10 PRK14283 chaperone protein Dna 99.8 5.4E-19 1.2E-23 161.7 7.1 66 90-155 4-69 (378)
11 PRK14276 chaperone protein Dna 99.8 5.3E-19 1.1E-23 161.9 6.7 67 90-156 3-69 (380)
12 PF00226 DnaJ: DnaJ domain; I 99.8 7.4E-19 1.6E-23 121.6 5.6 62 92-153 1-64 (64)
13 PRK14282 chaperone protein Dna 99.8 8.1E-19 1.8E-23 160.1 7.4 67 90-156 3-71 (369)
14 PRK14298 chaperone protein Dna 99.8 6.3E-19 1.4E-23 161.3 6.7 67 90-156 4-70 (377)
15 PTZ00037 DnaJ_C chaperone prot 99.8 6.8E-19 1.5E-23 163.1 6.7 64 90-156 27-90 (421)
16 PRK14278 chaperone protein Dna 99.8 7.6E-19 1.6E-23 160.8 6.9 65 91-155 3-67 (378)
17 PRK14291 chaperone protein Dna 99.8 9.9E-19 2.1E-23 160.2 6.8 66 91-156 3-68 (382)
18 KOG0715 Molecular chaperone (D 99.8 1.2E-18 2.6E-23 154.3 6.8 69 91-159 43-111 (288)
19 PRK14280 chaperone protein Dna 99.7 1.3E-18 2.9E-23 159.0 6.9 67 90-156 3-69 (376)
20 PRK14277 chaperone protein Dna 99.7 1.8E-18 4E-23 158.6 7.6 66 90-155 4-70 (386)
21 PRK14295 chaperone protein Dna 99.7 1.6E-18 3.5E-23 159.2 7.1 65 90-154 8-73 (389)
22 PRK14285 chaperone protein Dna 99.7 1.9E-18 4.1E-23 157.5 6.7 66 91-156 3-69 (365)
23 PRK14294 chaperone protein Dna 99.7 3E-18 6.6E-23 156.2 7.7 67 90-156 3-70 (366)
24 PRK14284 chaperone protein Dna 99.7 3.3E-18 7.2E-23 157.1 7.2 66 91-156 1-67 (391)
25 PRK14297 chaperone protein Dna 99.7 3.2E-18 6.9E-23 156.7 6.6 66 90-155 3-69 (380)
26 PRK14301 chaperone protein Dna 99.7 3.8E-18 8.3E-23 155.9 6.9 67 90-156 3-70 (373)
27 PRK10767 chaperone protein Dna 99.7 7.1E-18 1.5E-22 153.9 7.4 67 90-156 3-70 (371)
28 KOG0691 Molecular chaperone (D 99.7 9E-18 2E-22 148.6 7.6 71 90-160 4-75 (296)
29 KOG0716 Molecular chaperone (D 99.7 6.1E-18 1.3E-22 146.5 6.2 67 90-156 30-97 (279)
30 KOG0717 Molecular chaperone (D 99.7 6.2E-18 1.4E-22 155.1 6.4 71 88-158 5-77 (508)
31 PRK14281 chaperone protein Dna 99.7 8.9E-18 1.9E-22 154.6 6.8 66 91-156 3-69 (397)
32 TIGR02349 DnaJ_bact chaperone 99.7 1.1E-17 2.4E-22 151.7 6.4 65 92-156 1-65 (354)
33 PRK10266 curved DNA-binding pr 99.7 1.6E-17 3.4E-22 148.1 6.9 66 91-156 4-69 (306)
34 PRK14300 chaperone protein Dna 99.7 1.4E-17 3E-22 152.1 6.3 65 91-155 3-67 (372)
35 PRK14292 chaperone protein Dna 99.7 1.7E-17 3.6E-22 151.5 6.6 65 91-155 2-66 (371)
36 PRK14289 chaperone protein Dna 99.7 2.8E-17 6.2E-22 150.7 7.6 66 90-155 4-70 (386)
37 PRK14293 chaperone protein Dna 99.7 2E-17 4.3E-22 151.2 6.5 66 91-156 3-68 (374)
38 PRK14290 chaperone protein Dna 99.7 2.2E-17 4.9E-22 150.4 6.3 65 91-155 3-69 (365)
39 KOG0718 Molecular chaperone (D 99.7 7.2E-17 1.6E-21 148.3 7.2 76 90-165 8-87 (546)
40 PTZ00341 Ring-infected erythro 99.7 1E-16 2.2E-21 158.0 8.1 69 87-155 569-637 (1136)
41 KOG0624 dsRNA-activated protei 99.7 1.8E-17 3.8E-22 148.6 1.9 111 45-155 344-462 (504)
42 smart00271 DnaJ DnaJ molecular 99.7 1.3E-16 2.9E-21 108.5 5.4 57 91-147 1-59 (60)
43 KOG0719 Molecular chaperone (D 99.6 1.8E-16 4E-21 134.8 6.3 70 88-157 11-83 (264)
44 cd06257 DnaJ DnaJ domain or J- 99.6 4.5E-16 9.8E-21 104.0 5.9 54 92-145 1-55 (55)
45 COG2214 CbpA DnaJ-class molecu 99.6 1E-15 2.2E-20 125.9 6.5 66 90-155 5-72 (237)
46 TIGR03835 termin_org_DnaJ term 99.6 4.9E-15 1.1E-19 143.4 7.5 66 91-156 2-67 (871)
47 KOG0720 Molecular chaperone (D 99.5 1.6E-14 3.4E-19 132.8 9.1 70 90-159 234-303 (490)
48 KOG0721 Molecular chaperone (D 99.5 1.3E-14 2.9E-19 122.3 6.7 68 88-155 96-164 (230)
49 KOG0722 Molecular chaperone (D 99.5 1.6E-14 3.5E-19 124.5 3.8 79 82-160 24-102 (329)
50 PHA03102 Small T antigen; Revi 99.5 3.3E-14 7.2E-19 115.1 4.5 62 91-155 5-68 (153)
51 KOG0550 Molecular chaperone (D 99.5 5E-15 1.1E-19 135.0 -1.5 113 46-159 325-443 (486)
52 PRK05014 hscB co-chaperone Hsc 99.4 1.7E-13 3.7E-18 113.0 7.2 67 91-157 1-75 (171)
53 PRK01356 hscB co-chaperone Hsc 99.4 2.7E-13 5.9E-18 111.3 7.5 67 91-157 2-74 (166)
54 PRK00294 hscB co-chaperone Hsc 99.4 1.1E-12 2.3E-17 108.5 7.5 69 89-157 2-78 (173)
55 PRK03578 hscB co-chaperone Hsc 99.4 1.1E-12 2.4E-17 108.7 7.3 68 90-157 5-80 (176)
56 KOG0714 Molecular chaperone (D 99.4 4.2E-13 9.2E-18 115.4 3.9 68 90-157 2-71 (306)
57 PRK09430 djlA Dna-J like membr 99.3 4.3E-12 9.3E-17 111.4 4.8 55 91-145 200-262 (267)
58 KOG1150 Predicted molecular ch 99.3 1.4E-11 3.1E-16 103.1 7.6 89 65-153 26-117 (250)
59 PTZ00100 DnaJ chaperone protei 99.2 6.1E-12 1.3E-16 97.4 3.5 52 90-144 64-115 (116)
60 PHA02624 large T antigen; Prov 99.2 7E-11 1.5E-15 113.3 10.0 59 91-152 11-71 (647)
61 COG5269 ZUO1 Ribosome-associat 99.1 3.6E-11 7.8E-16 104.8 4.3 73 84-156 36-114 (379)
62 COG5407 SEC63 Preprotein trans 99.1 1.2E-10 2.5E-15 107.5 7.2 66 90-155 97-168 (610)
63 TIGR00714 hscB Fe-S protein as 98.9 4.4E-09 9.4E-14 85.7 6.2 55 103-157 3-63 (157)
64 PRK01773 hscB co-chaperone Hsc 98.8 1E-08 2.2E-13 84.9 7.0 67 91-157 2-76 (173)
65 KOG0568 Molecular chaperone (D 98.2 9.4E-07 2E-11 76.0 4.1 55 91-145 47-102 (342)
66 KOG1789 Endocytosis protein RM 97.9 2E-05 4.4E-10 79.6 5.9 55 88-144 1278-1336(2235)
67 KOG0723 Molecular chaperone (D 97.2 0.00085 1.8E-08 51.2 5.3 52 92-146 57-108 (112)
68 COG1076 DjlA DnaJ-domain-conta 96.0 0.0043 9.3E-08 51.2 2.4 53 91-143 113-173 (174)
69 KOG0431 Auxilin-like protein a 95.8 0.012 2.6E-07 55.7 4.5 45 99-143 396-448 (453)
70 KOG3192 Mitochondrial J-type c 95.7 0.022 4.8E-07 46.4 5.2 70 91-160 8-85 (168)
71 PF13446 RPT: A repeated domai 91.1 0.48 1E-05 32.2 4.4 26 92-117 6-31 (62)
72 COG1076 DjlA DnaJ-domain-conta 89.8 0.34 7.3E-06 39.9 3.2 65 93-157 3-75 (174)
73 KOG0724 Zuotin and related mol 88.0 0.52 1.1E-05 42.3 3.5 55 102-156 3-62 (335)
74 PF11833 DUF3353: Protein of u 86.4 1.4 2.9E-05 37.2 4.8 38 100-144 1-38 (194)
75 PF03656 Pam16: Pam16; InterP 82.0 1.9 4.2E-05 34.0 3.7 50 93-145 60-109 (127)
76 PF07709 SRR: Seven Residue Re 53.6 8.7 0.00019 18.6 1.1 13 132-144 2-14 (14)
77 PF06783 UPF0239: Uncharacteri 44.5 15 0.00032 27.1 1.6 23 191-213 20-42 (85)
78 COG5552 Uncharacterized conser 40.8 89 0.0019 22.6 5.0 42 94-135 6-47 (88)
79 PF10041 DUF2277: Uncharacteri 40.2 71 0.0015 23.1 4.5 40 96-135 8-47 (78)
80 COG4327 Predicted membrane pro 32.5 25 0.00054 26.4 1.2 19 191-209 17-35 (101)
81 KOG2217 U4/U6.U5 snRNP associa 32.1 53 0.0011 32.8 3.7 32 108-139 629-660 (705)
82 cd01388 SOX-TCF_HMG-box SOX-TC 29.7 1.3E+02 0.0028 20.4 4.5 43 110-156 14-56 (72)
83 PF14687 DUF4460: Domain of un 28.0 1.1E+02 0.0023 23.5 4.0 45 101-145 4-53 (112)
84 PF02038 ATP1G1_PLM_MAT8: ATP1 27.2 17 0.00037 24.1 -0.4 23 188-210 10-32 (50)
85 KOG3442 Uncharacterized conser 25.8 66 0.0014 25.4 2.5 29 94-122 62-90 (132)
86 PF15128 T_cell_tran_alt: T-ce 24.6 56 0.0012 24.1 1.8 13 197-209 29-41 (92)
87 cd00084 HMG-box High Mobility 24.4 1.7E+02 0.0038 18.6 4.2 42 110-155 13-54 (66)
88 PF01102 Glycophorin_A: Glycop 23.5 37 0.00081 26.6 0.8 19 197-215 72-90 (122)
89 cd01389 MATA_HMG-box MATA_HMG- 22.1 2.3E+02 0.0049 19.4 4.6 43 109-155 13-55 (77)
90 KOG3960 Myogenic helix-loop-he 21.8 54 0.0012 29.0 1.5 19 131-149 128-151 (284)
91 PF03343 SART-1: SART-1 family 21.7 31 0.00066 33.8 0.0 29 109-137 582-610 (613)
92 KOG0527 HMG-box transcription 21.4 1.4E+02 0.0031 27.3 4.3 28 128-155 89-116 (331)
93 PF15102 TMEM154: TMEM154 prot 21.3 83 0.0018 25.5 2.4 22 194-215 62-83 (146)
94 PF12725 DUF3810: Protein of u 21.1 1.6E+02 0.0036 26.5 4.6 62 84-145 75-148 (318)
95 PF13908 Shisa: Wnt and FGF in 20.4 63 0.0014 26.3 1.6 15 191-205 77-91 (179)
96 cd01390 HMGB-UBF_HMG-box HMGB- 20.4 2.3E+02 0.0049 18.3 4.2 39 113-155 16-54 (66)
97 PF12434 Malate_DH: Malate deh 20.1 92 0.002 18.1 1.7 17 105-121 10-26 (28)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-24 Score=195.43 Aligned_cols=72 Identities=25% Similarity=0.328 Sum_probs=67.2
Q ss_pred CCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccc
Q 028038 89 TDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSLARTE 160 (215)
Q Consensus 89 ~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~~~ 160 (215)
...|||+||||+++||.+|||+||||||++||||+|+ +++|+++|++|+|||+|||||+||+.||+.-....
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~ 74 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGF 74 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccc
Confidence 4579999999999999999999999999999999999 89999999999999999999999999997755443
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.2e-22 Score=178.68 Aligned_cols=69 Identities=23% Similarity=0.340 Sum_probs=65.6
Q ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 88 ITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 88 ~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
...+|||+||||+++|+..|||+||||||++||||+|+ ++.|.+.|++|+.||+|||||++|+.||...
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~G 82 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYG 82 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 44689999999999999999999999999999999998 6899999999999999999999999999876
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.8e-20 Score=171.04 Aligned_cols=66 Identities=26% Similarity=0.412 Sum_probs=62.6
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
.|||+||||+++||.+|||+|||+||++||||+++ ++.|+++|++|++||+||+||++|+.||..-
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G 69 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYG 69 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence 69999999999999999999999999999999987 5678999999999999999999999999853
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=1.9e-20 Score=170.98 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=63.4
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
..|||+||||+++|+.+|||+|||+||++||||+++.+.|+++|++|++||+||+||+||+.||..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~ 68 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQF 68 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhc
Confidence 469999999999999999999999999999999998788999999999999999999999999985
No 5
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.3e-19 Score=162.12 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=63.1
Q ss_pred CCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcc
Q 028038 89 TDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSLAR 158 (215)
Q Consensus 89 ~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~ 158 (215)
.+..||+||||.++||.+|||+|||+|+++||||+|+. +.++|++|.+||+|||||++|+.||+.-..
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~ 69 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEE 69 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence 35689999999999999999999999999999999876 889999999999999999999999987533
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.2e-19 Score=166.74 Aligned_cols=67 Identities=22% Similarity=0.371 Sum_probs=63.2
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
..|||+||||+++|+.+|||+|||+||++||||+++ .+.|+++|++|++||+||+||+||+.||..-
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 479999999999999999999999999999999987 5678999999999999999999999999863
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.1e-19 Score=163.03 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=62.6
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
+.|||+||||+++|+.+|||+|||+||++||||+++ +..|+++|++|++||+||+||++|+.||..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~ 69 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQF 69 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 469999999999999999999999999999999987 567899999999999999999999999985
No 8
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3.9e-19 Score=162.29 Aligned_cols=67 Identities=28% Similarity=0.353 Sum_probs=63.5
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
..|||+||||+++|+.+|||+|||+|+++||||+++.+.++++|++|++||+||+||++|+.||..-
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G 69 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFG 69 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhC
Confidence 3699999999999999999999999999999999887788999999999999999999999999863
No 9
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.3e-19 Score=156.61 Aligned_cols=67 Identities=28% Similarity=0.376 Sum_probs=63.7
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
..|||+||||+++||.+|||+|||+|++++|||++++..++++|++|++||+||+||++|+.||..-
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g 69 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYG 69 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 3699999999999999999999999999999999988889999999999999999999999999863
No 10
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.4e-19 Score=161.71 Aligned_cols=66 Identities=29% Similarity=0.428 Sum_probs=63.4
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
+.|||+||||+++|+.+|||+|||+||++||||+++.+.|+++|++|++||+||+||.+|+.||..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~ 69 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQF 69 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhh
Confidence 579999999999999999999999999999999988778999999999999999999999999985
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=5.3e-19 Score=161.87 Aligned_cols=67 Identities=27% Similarity=0.366 Sum_probs=63.6
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
+.|||+||||+++|+.+|||+|||+|+++||||+++...|+++|++|++||+||+||++|+.||..-
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 69 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYG 69 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcC
Confidence 4699999999999999999999999999999999987788999999999999999999999999853
No 12
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.76 E-value=7.4e-19 Score=121.59 Aligned_cols=62 Identities=31% Similarity=0.439 Sum_probs=59.0
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHH--HHHHHHHHHHHHHHcCChhHHHHHH
Q 028038 92 DHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEE--ESKKIKLLKESYSILSSEEERRLYD 153 (215)
Q Consensus 92 d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~--a~~~f~~i~~Ay~vLsdp~~R~~YD 153 (215)
|||+||||+++++.++||++|+++++.+|||++.... +.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987644 8999999999999999999999998
No 13
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=8.1e-19 Score=160.08 Aligned_cols=67 Identities=28% Similarity=0.439 Sum_probs=62.4
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCc--HHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDE--EEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~--~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
..|||+||||+++|+.+|||+|||+|+++||||+++. ..|+++|++|++||+||+||++|+.||..-
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g 71 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFG 71 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcC
Confidence 4699999999999999999999999999999999873 568899999999999999999999999853
No 14
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=6.3e-19 Score=161.28 Aligned_cols=67 Identities=27% Similarity=0.393 Sum_probs=63.5
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
..|||+||||+++|+.+|||+|||+||++||||+++...++++|++|++||+||+||++|+.||..-
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFG 70 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcC
Confidence 3699999999999999999999999999999999987888999999999999999999999999853
No 15
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.76 E-value=6.8e-19 Score=163.05 Aligned_cols=64 Identities=25% Similarity=0.420 Sum_probs=59.5
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
..|||+||||+++||.+|||+|||+||++||||+++. .++|++|++||+||+||++|+.||..-
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G 90 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYG 90 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhc
Confidence 3599999999999999999999999999999999753 489999999999999999999999853
No 16
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=7.6e-19 Score=160.77 Aligned_cols=65 Identities=32% Similarity=0.459 Sum_probs=62.7
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
.|||+||||+++|+.+|||+|||+||++||||+++.+.|+++|++|++||+||+||++|+.||..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~ 67 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLG 67 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhcc
Confidence 59999999999999999999999999999999998888999999999999999999999999975
No 17
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=9.9e-19 Score=160.19 Aligned_cols=66 Identities=29% Similarity=0.403 Sum_probs=63.3
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
.|||+||||+++|+.+|||+|||+|+++||||+++.+.++++|++|++||+||+||.+|+.||...
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g 68 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFG 68 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhc
Confidence 699999999999999999999999999999999988888999999999999999999999999864
No 18
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.2e-18 Score=154.25 Aligned_cols=69 Identities=30% Similarity=0.421 Sum_probs=66.3
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHhccc
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSLART 159 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~~ 159 (215)
.|||+||||+++|+..|||+||++|+++||||.+..+.++++|++|.+|||||+|+++|+.||..+...
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 399999999999999999999999999999999999999999999999999999999999999988764
No 19
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.3e-18 Score=159.03 Aligned_cols=67 Identities=28% Similarity=0.378 Sum_probs=63.5
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
..|||+||||+++|+.+|||+|||+|+++||||+++.+.|+++|++|++||+||+||.+|+.||..-
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 69 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFG 69 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcC
Confidence 3699999999999999999999999999999999987889999999999999999999999999853
No 20
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.8e-18 Score=158.62 Aligned_cols=66 Identities=27% Similarity=0.392 Sum_probs=62.4
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
..|||+||||+++|+.+|||+|||+||++||||+++ .+.|+++|++|++||+||+||.+|+.||..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~ 70 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQF 70 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhh
Confidence 369999999999999999999999999999999987 467889999999999999999999999985
No 21
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.6e-18 Score=159.17 Aligned_cols=65 Identities=23% Similarity=0.417 Sum_probs=61.7
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDW 154 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 154 (215)
..|||+||||+++|+.+|||+|||+|+++||||+++ ...|+++|++|++||+||+||.+|+.||.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 469999999999999999999999999999999987 45789999999999999999999999998
No 22
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.9e-18 Score=157.53 Aligned_cols=66 Identities=27% Similarity=0.348 Sum_probs=62.2
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
.|||+||||+++||.+|||+|||+|+++||||+++ .+.|+++|++|++||+||+||++|+.||..-
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g 69 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFG 69 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcC
Confidence 59999999999999999999999999999999987 4678899999999999999999999999853
No 23
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=3e-18 Score=156.17 Aligned_cols=67 Identities=24% Similarity=0.327 Sum_probs=62.9
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
..|||+||||+++|+.+|||+|||+|+++||||+++ .+.++++|++|++||+||+||.+|+.||..-
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G 70 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYG 70 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhc
Confidence 469999999999999999999999999999999987 4678899999999999999999999999863
No 24
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.3e-18 Score=157.14 Aligned_cols=66 Identities=26% Similarity=0.357 Sum_probs=62.2
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
.|||+||||+++|+.+|||+|||+||++||||+++ ...|+++|++|++||+||+|+++|+.||..-
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 67 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYG 67 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 38999999999999999999999999999999987 4678999999999999999999999999853
No 25
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.2e-18 Score=156.72 Aligned_cols=66 Identities=27% Similarity=0.407 Sum_probs=62.4
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
..|||+||||+++|+.+|||+|||+|+++||||+++ .+.|+++|++|++||+||+||.+|+.||..
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~ 69 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQF 69 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhc
Confidence 369999999999999999999999999999999987 467899999999999999999999999985
No 26
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.8e-18 Score=155.90 Aligned_cols=67 Identities=28% Similarity=0.335 Sum_probs=62.7
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
..|||+||||+++|+.+|||+|||+|+++||||+++ ...|+++|++|++||+||+||.+|+.||..-
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g 70 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFG 70 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcc
Confidence 469999999999999999999999999999999987 4678899999999999999999999999854
No 27
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=7.1e-18 Score=153.92 Aligned_cols=67 Identities=30% Similarity=0.395 Sum_probs=62.6
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
..|||+||||+++|+.+|||+|||+|+++||||+++ ...|+++|++|++||++|+|+.+|+.||..-
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g 70 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYG 70 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcc
Confidence 469999999999999999999999999999999987 4678899999999999999999999999753
No 28
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=9e-18 Score=148.63 Aligned_cols=71 Identities=27% Similarity=0.369 Sum_probs=66.8
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccc
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSLARTE 160 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~~~ 160 (215)
+.|||.||||+.+|+..||++|||++++++|||+|+ ++.|.++|+.|.+||+||+|++.|..||..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 679999999999999999999999999999999998 67899999999999999999999999999876543
No 29
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.1e-18 Score=146.45 Aligned_cols=67 Identities=27% Similarity=0.359 Sum_probs=63.6
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCc-HHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDE-EEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
..|+|+|||++++|+.++|||+||+|++++|||++++ +++..+|++|++||+||+||.+|..||...
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g 97 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYG 97 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhh
Confidence 5699999999999999999999999999999999885 789999999999999999999999999874
No 30
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.2e-18 Score=155.05 Aligned_cols=71 Identities=23% Similarity=0.336 Sum_probs=65.1
Q ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC--cHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcc
Q 028038 88 ITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD--EEEESKKIKLLKESYSILSSEEERRLYDWSLAR 158 (215)
Q Consensus 88 ~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~--~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~ 158 (215)
.+..+||+||||.++|+..+||++||+||++||||+++ -++|.++|++|+.||+|||||..|..||.....
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreq 77 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQ 77 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHH
Confidence 34579999999999999999999999999999999987 467889999999999999999999999977653
No 31
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=8.9e-18 Score=154.62 Aligned_cols=66 Identities=27% Similarity=0.390 Sum_probs=62.1
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
.|||+||||+++|+.+|||+|||+|+++||||+++ ...|+++|++|++||+||+|+.+|+.||...
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g 69 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFG 69 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 59999999999999999999999999999999987 4678899999999999999999999999753
No 32
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.71 E-value=1.1e-17 Score=151.69 Aligned_cols=65 Identities=28% Similarity=0.397 Sum_probs=61.9
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 92 DHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 92 d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
|||+||||+++|+.+|||+|||+|+++||||+++...++++|++|++||+||+|+.+|+.||..-
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g 65 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFG 65 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcc
Confidence 79999999999999999999999999999999887778899999999999999999999999853
No 33
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.70 E-value=1.6e-17 Score=148.11 Aligned_cols=66 Identities=20% Similarity=0.318 Sum_probs=63.0
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
.|||+||||+++|+.+|||+|||+|++++|||+++...++++|++|++||++|+||.+|+.||...
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 599999999999999999999999999999999887789999999999999999999999999863
No 34
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.4e-17 Score=152.14 Aligned_cols=65 Identities=25% Similarity=0.380 Sum_probs=62.2
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
.|||+||||+++||.+|||+|||+++++||||+++...++++|++|++||++|+|+.+|+.||..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~ 67 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRF 67 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhc
Confidence 59999999999999999999999999999999987777889999999999999999999999985
No 35
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.7e-17 Score=151.48 Aligned_cols=65 Identities=29% Similarity=0.405 Sum_probs=62.6
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
.|||+||||+++|+.+|||+|||+|++++|||+++...++++|++|++||+||+||.+|+.||..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~ 66 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRF 66 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhc
Confidence 48999999999999999999999999999999998888999999999999999999999999985
No 36
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.8e-17 Score=150.71 Aligned_cols=66 Identities=27% Similarity=0.406 Sum_probs=62.4
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
..|||+||||+++|+.+|||+|||+|+++||||+++ .+.++++|++|++||++|+||.+|+.||..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~ 70 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQF 70 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 469999999999999999999999999999999987 457899999999999999999999999985
No 37
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2e-17 Score=151.18 Aligned_cols=66 Identities=27% Similarity=0.335 Sum_probs=62.9
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
.|||+||||+++|+.+|||+|||+|++++|||+++...++++|++|++||+||+||.+|+.||..-
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g 68 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFG 68 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcc
Confidence 599999999999999999999999999999999987788999999999999999999999999853
No 38
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.2e-17 Score=150.42 Aligned_cols=65 Identities=26% Similarity=0.406 Sum_probs=61.3
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCc--HHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDE--EEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~--~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
.|||+||||+++|+.+|||+|||+|++++|||.++. ..|+++|++|++||+||+|+.+|+.||..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~ 69 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQT 69 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhccc
Confidence 599999999999999999999999999999999874 36889999999999999999999999975
No 39
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=7.2e-17 Score=148.32 Aligned_cols=76 Identities=17% Similarity=0.334 Sum_probs=66.6
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC----cHHHHHHHHHHHHHHHHcCChhHHHHHHHHhccccCCCCC
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD----EEEESKKIKLLKESYSILSSEEERRLYDWSLARTENPDRY 165 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~----~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~~~~~~~~ 165 (215)
+.|||.+|+|+++||.+|||+|||++++.+|||+.. +..|++.|+.|.+||||||||++|..||..-.+.-+.+.|
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~gw 87 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTEGW 87 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccccCc
Confidence 459999999999999999999999999999999865 4578999999999999999999999999875544444544
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.67 E-value=1e-16 Score=157.98 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=64.9
Q ss_pred CCCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 87 AITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 87 ~~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
...+.+||+||||+++|+..+||+|||+||+++|||+++...|.++|+.|++||+|||||.+|+.||..
T Consensus 569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~ 637 (1136)
T PTZ00341 569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKF 637 (1136)
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhc
Confidence 356789999999999999999999999999999999998777889999999999999999999999975
No 41
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.66 E-value=1.8e-17 Score=148.64 Aligned_cols=111 Identities=23% Similarity=0.258 Sum_probs=86.9
Q ss_pred eeeccCCCCCCCCCCCCCCc---cccCCCCchhhHHHHHHHHcCcC-CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCC
Q 028038 45 LTVRNTGDVSAETGSTEIEP---EARSDPSSLISALNVERALRGIA-ITDADHYGRLELRRGCSFDEVALAYKNKLEGLK 120 (215)
Q Consensus 45 ~~~rs~~~~~~~~~e~~~~~---~~~~~~~sl~~~~~~~~~l~~~~-~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~h 120 (215)
+|.|+....-.++++..+.+ ..+-+++....+..++++.+-+. ...+|||+||||.++|+..||.|||||+|.+||
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWH 423 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWH 423 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcC
Confidence 44455555445555554444 23334445555677888887655 678999999999999999999999999999999
Q ss_pred CCCCCc----HHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 121 DQGLDE----EEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 121 pd~~~~----~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
||...+ ..|+++|..|..|-+||+||++|+.||..
T Consensus 424 PDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 424 PDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred CccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 998764 35888999999999999999999999965
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.66 E-value=1.3e-16 Score=108.55 Aligned_cols=57 Identities=32% Similarity=0.447 Sum_probs=53.9
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC--cHHHHHHHHHHHHHHHHcCChh
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD--EEEESKKIKLLKESYSILSSEE 147 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~--~~~a~~~f~~i~~Ay~vLsdp~ 147 (215)
.|||+||||+++++.++||++|+++++.+|||++. ...+.+.|++|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999988 6788999999999999999985
No 43
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.8e-16 Score=134.81 Aligned_cols=70 Identities=29% Similarity=0.402 Sum_probs=63.4
Q ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 88 ITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD---EEEESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 88 ~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~---~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
....|.|+||||.++|+..+||+||++|++.+|||+++ ...+.++|++|+.||+||||.++|+.||....
T Consensus 11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 34469999999999999999999999999999999985 35678899999999999999999999998643
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.63 E-value=4.5e-16 Score=104.01 Aligned_cols=54 Identities=26% Similarity=0.352 Sum_probs=51.5
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCc-HHHHHHHHHHHHHHHHcCC
Q 028038 92 DHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDE-EEESKKIKLLKESYSILSS 145 (215)
Q Consensus 92 d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~-~~a~~~f~~i~~Ay~vLsd 145 (215)
|||+||||+++++.++||++|+++++.+|||++.. ..+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999876 7789999999999999987
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1e-15 Score=125.86 Aligned_cols=66 Identities=27% Similarity=0.335 Sum_probs=62.0
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHH--HHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEE--ESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~--a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
..|||+||||.++|+..|||+|||++++++|||+++... +.+.|+.|++||++|+|+.+|+.||..
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 469999999999999999999999999999999998543 899999999999999999999999985
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.56 E-value=4.9e-15 Score=143.42 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=62.9
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
.|||+||||+++|+.++||+|||+|++++|||++....+.++|++|++||++|+||.+|+.||...
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG 67 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYG 67 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhc
Confidence 599999999999999999999999999999999887788889999999999999999999999864
No 47
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.6e-14 Score=132.83 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=67.0
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHhccc
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSLART 159 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~~ 159 (215)
..|+|.+|||+.++++++|||.|||+|-..|||+|..+.|++.|+.|+.||++|+|+++|+.||..+..+
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke 303 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE 303 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999999999999999888654
No 48
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.3e-14 Score=122.28 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=62.6
Q ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCc-HHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 88 ITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDE-EEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 88 ~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
...-|+|+||||+++++..|||+|||+|+.++|||+++. .+.++.|..|.+||+.|+|++.|..|...
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekY 164 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKY 164 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHh
Confidence 345699999999999999999999999999999999886 66778899999999999999999999876
No 49
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.6e-14 Score=124.53 Aligned_cols=79 Identities=23% Similarity=0.353 Sum_probs=72.8
Q ss_pred HHcCcCCCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccc
Q 028038 82 ALRGIAITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSLARTE 160 (215)
Q Consensus 82 ~l~~~~~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~~~ 160 (215)
...++-++..|+|+||||.++++..||.+|||+|++++|||+++++++.+.|+.|..||++|.|.+.|..||..+...+
T Consensus 24 l~egLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd 102 (329)
T KOG0722|consen 24 LSEGLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHPD 102 (329)
T ss_pred hhhhhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCch
Confidence 3446778889999999999999999999999999999999999988889999999999999999999999999886554
No 50
>PHA03102 Small T antigen; Reviewed
Probab=99.47 E-value=3.3e-14 Score=115.13 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=57.2
Q ss_pred CCcccccCcCCCC--CHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 91 ADHYGRLELRRGC--SFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 91 ~d~Y~vLgv~~~A--s~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
..+|+||||+++| |.++||+|||++++.+|||+++. +++|++|++||++|+|+.+|..||..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~---~e~~k~in~Ay~~L~d~~~r~~yd~~ 68 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD---EEKMKELNTLYKKFRESVKSLRDLDG 68 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch---hHHHHHHHHHHHHHhhHHHhcccccc
Confidence 3579999999999 99999999999999999999643 57999999999999999999999975
No 51
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5e-15 Score=135.04 Aligned_cols=113 Identities=20% Similarity=0.195 Sum_probs=81.7
Q ss_pred eeccCCCCCCCCCCCCCCc---cccCCCCchhhHHHHHHHHcCcC-CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCC
Q 028038 46 TVRNTGDVSAETGSTEIEP---EARSDPSSLISALNVERALRGIA-ITDADHYGRLELRRGCSFDEVALAYKNKLEGLKD 121 (215)
Q Consensus 46 ~~rs~~~~~~~~~e~~~~~---~~~~~~~sl~~~~~~~~~l~~~~-~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hp 121 (215)
++|+.+....+..++.+.+ ....+.+ -.....+.++..++. .+..|||.||||.++|+.+|||+|||++++.+||
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hp 403 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHP 403 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCC
Confidence 3445555555545554443 1111221 122344444444444 5678999999999999999999999999999999
Q ss_pred CCCC--cHHHHHHHHHHHHHHHHcCChhHHHHHHHHhccc
Q 028038 122 QGLD--EEEESKKIKLLKESYSILSSEEERRLYDWSLART 159 (215)
Q Consensus 122 d~~~--~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~~ 159 (215)
|++. ..+++.+|+++.+||.+|+||.+|..||......
T Consensus 404 d~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle 443 (486)
T KOG0550|consen 404 DKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLE 443 (486)
T ss_pred CcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchh
Confidence 9976 3678889999999999999999999999765443
No 52
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.45 E-value=1.7e-13 Score=112.99 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=58.9
Q ss_pred CCcccccCcCCC--CCHHHHHHHHHHHHhcCCCCCCCcH------HHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 91 ADHYGRLELRRG--CSFDEVALAYKNKLEGLKDQGLDEE------EESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 91 ~d~Y~vLgv~~~--As~~eIk~AYrkla~~~hpd~~~~~------~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
.|||+||||++. ++..+|+++||++++.+|||+.... .+.+.|..|++||++|+||.+|..|+..+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 389999999995 7889999999999999999986421 256689999999999999999999998765
No 53
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=2.7e-13 Score=111.35 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=58.4
Q ss_pred CCcccccCcCCC--CCHHHHHHHHHHHHhcCCCCCCCcHH----HHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 91 ADHYGRLELRRG--CSFDEVALAYKNKLEGLKDQGLDEEE----ESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 91 ~d~Y~vLgv~~~--As~~eIk~AYrkla~~~hpd~~~~~~----a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
.|||++|||+++ ++..+|+++||++++++|||+..... +.+.+..|++||++|+||.+|..|+..+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 489999999996 78999999999999999999975322 23457899999999999999999998874
No 54
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.38 E-value=1.1e-12 Score=108.46 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=60.9
Q ss_pred CCCCcccccCcCCC--CCHHHHHHHHHHHHhcCCCCCCCc------HHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 89 TDADHYGRLELRRG--CSFDEVALAYKNKLEGLKDQGLDE------EEESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 89 ~~~d~Y~vLgv~~~--As~~eIk~AYrkla~~~hpd~~~~------~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
+..|||++|||++. .+..+|+++||++++.+|||++.. ..+.+.|..|++||++|+||.+|+.|+..+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 45799999999996 668999999999999999998752 2256689999999999999999999999875
No 55
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=1.1e-12 Score=108.67 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=58.5
Q ss_pred CCCcccccCcCCC--CCHHHHHHHHHHHHhcCCCCCCCc-HH-----HHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 90 DADHYGRLELRRG--CSFDEVALAYKNKLEGLKDQGLDE-EE-----ESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 90 ~~d~Y~vLgv~~~--As~~eIk~AYrkla~~~hpd~~~~-~~-----a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
..|||+||||++. ++..+|+++||++++++|||++.. .. +.+.+..|++||++|+||.+|..|+..+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 3699999999995 688999999999999999998752 22 23346899999999999999999998875
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.2e-13 Score=115.37 Aligned_cols=68 Identities=24% Similarity=0.330 Sum_probs=62.7
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcH--HHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEE--EESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~--~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
..|+|+||||.++|+.+||++||+++++.+|||+++.. .++++|+++.+||++|+|+.+|..||..-.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 36999999999999999999999999999999998866 666689999999999999999999998764
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.26 E-value=4.3e-12 Score=111.44 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=50.2
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCc--------HHHHHHHHHHHHHHHHcCC
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDE--------EEESKKIKLLKESYSILSS 145 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~--------~~a~~~f~~i~~Ay~vLsd 145 (215)
.|+|+||||++++|.+|||+|||+|++++|||++.. +.++++|++|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999631 4578999999999999974
No 58
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.4e-11 Score=103.08 Aligned_cols=89 Identities=18% Similarity=0.286 Sum_probs=80.2
Q ss_pred cccCCCCchhhHHHHHHHHc-CcCCCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCc--HHHHHHHHHHHHHHH
Q 028038 65 EARSDPSSLISALNVERALR-GIAITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDE--EEESKKIKLLKESYS 141 (215)
Q Consensus 65 ~~~~~~~sl~~~~~~~~~l~-~~~~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~--~~a~~~f~~i~~Ay~ 141 (215)
+.+.-+++|++...+++.++ |..+.+.+.|+||.|.++.+.++||+.||+|+...|||+|+. +.|...|..|.+||.
T Consensus 26 ~~ek~d~vLts~~qIeRllrpgstyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k 105 (250)
T KOG1150|consen 26 SIEKRDSVLTSKQQIERLLRPGSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYK 105 (250)
T ss_pred hhhhhhcccCcHHHHHHHhcCCccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHH
Confidence 44567789999999999999 777999999999999999999999999999999999999983 678999999999999
Q ss_pred HcCChhHHHHHH
Q 028038 142 ILSSEEERRLYD 153 (215)
Q Consensus 142 vLsdp~~R~~YD 153 (215)
+|-|+..|..-+
T Consensus 106 ~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 106 LLENDKIRKRCL 117 (250)
T ss_pred HHhCHHHHHHHH
Confidence 999999776543
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.23 E-value=6.1e-12 Score=97.41 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=46.9
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcC
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILS 144 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLs 144 (215)
..++|+||||+++++.+|||++||++++.+|||+.+ ..+.|++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG---s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG---STYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999999999843 3568999999999985
No 60
>PHA02624 large T antigen; Provisional
Probab=99.20 E-value=7e-11 Score=113.32 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=55.2
Q ss_pred CCcccccCcCCCC--CHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHH
Q 028038 91 ADHYGRLELRRGC--SFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLY 152 (215)
Q Consensus 91 ~d~Y~vLgv~~~A--s~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~Y 152 (215)
.++|++|||+++| +.++||+|||++++++|||+.+ .+++|++|++||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG---deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG---DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 4889999999999 9999999999999999999854 367999999999999999999998
No 61
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.6e-11 Score=104.83 Aligned_cols=73 Identities=18% Similarity=0.147 Sum_probs=65.1
Q ss_pred cCcCCCCCCcccccCcCC---CCCHHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 84 RGIAITDADHYGRLELRR---GCSFDEVALAYKNKLEGLKDQGL---DEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 84 ~~~~~~~~d~Y~vLgv~~---~As~~eIk~AYrkla~~~hpd~~---~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
+...|+..|+|.+||++. .+++.+|.+++++++.+||||.. ++....+.|++|+.||+||+|+.+|..||..-
T Consensus 36 d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 36 DFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 366799999999999987 79999999999999999999975 24566789999999999999999999999654
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.12 E-value=1.2e-10 Score=107.49 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=60.5
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCc------HHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDE------EEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~------~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
--|+|+||||..+++..+||++||+|+-++|||+.++ .+.++.+++|++||+.|+|...|..|-.+
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~y 168 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNY 168 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 3599999999999999999999999999999998763 56788999999999999999999998765
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.86 E-value=4.4e-09 Score=85.70 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCc------HHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 103 CSFDEVALAYKNKLEGLKDQGLDE------EEESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 103 As~~eIk~AYrkla~~~hpd~~~~------~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
-+..+|+++||++++.+|||+... ..+.+.|..|++||++|+||.+|+.|+..|.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 467899999999999999997532 2356789999999999999999999999886
No 64
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.82 E-value=1e-08 Score=84.86 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=58.0
Q ss_pred CCcccccCcCCC--CCHHHHHHHHHHHHhcCCCCCCCcH------HHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 91 ADHYGRLELRRG--CSFDEVALAYKNKLEGLKDQGLDEE------EESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 91 ~d~Y~vLgv~~~--As~~eIk~AYrkla~~~hpd~~~~~------~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
.|||++||+++. .+..++++.|+++.+.+|||+.... .+.+.-..||+||.+|.||-+|+.|=..+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 489999999985 8999999999999999999986422 234466889999999999999999998875
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=9.4e-07 Score=76.02 Aligned_cols=55 Identities=18% Similarity=0.360 Sum_probs=50.6
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHH-HcCC
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYS-ILSS 145 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~-vLsd 145 (215)
..||.||||..+|+.++++.||.+|++++|||...++...+.|.+|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999998777777889999999998 7753
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=2e-05 Score=79.59 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=46.4
Q ss_pred CCCCCcccccCcCCC----CCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcC
Q 028038 88 ITDADHYGRLELRRG----CSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILS 144 (215)
Q Consensus 88 ~~~~d~Y~vLgv~~~----As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLs 144 (215)
....+-|+||.|+-+ -..+.||++|+||+.+||||+|+ +..++|..+++|||.|+
T Consensus 1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLS 1336 (2235)
T ss_pred cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHH
Confidence 455788999999862 23478999999999999999965 45689999999999998
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00085 Score=51.21 Aligned_cols=52 Identities=10% Similarity=-0.009 Sum_probs=43.4
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCh
Q 028038 92 DHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSE 146 (215)
Q Consensus 92 d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp 146 (215)
.--.||||.+.++.+.||.|+|+.-..-|||+-..+-. -.+|+||+++|...
T Consensus 57 EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYl---AsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 57 EAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYL---ASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHH---HHHHHHHHHHHhcc
Confidence 34479999999999999999999999999998665543 34699999999653
No 68
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.0043 Score=51.17 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=45.7
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC--------cHHHHHHHHHHHHHHHHc
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD--------EEEESKKIKLLKESYSIL 143 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~--------~~~a~~~f~~i~~Ay~vL 143 (215)
.|.|.+||+...+...+|+++|+++....|||+.. -+.+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999998532 245678899999999753
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.79 E-value=0.012 Score=55.66 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=34.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCCCCcH--------HHHHHHHHHHHHHHHc
Q 028038 99 LRRGCSFDEVALAYKNKLEGLKDQGLDEE--------EESKKIKLLKESYSIL 143 (215)
Q Consensus 99 v~~~As~~eIk~AYrkla~~~hpd~~~~~--------~a~~~f~~i~~Ay~vL 143 (215)
+..=.+.++|||+|||.++..|||+.... .+++.|..+++||+..
T Consensus 396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 33356899999999999999999998743 2456677777777754
No 70
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.022 Score=46.41 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=52.3
Q ss_pred CCcccccCcCC--CCCHHHHHHHHHHHHhcCCCCCC------CcHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccc
Q 028038 91 ADHYGRLELRR--GCSFDEVALAYKNKLEGLKDQGL------DEEEESKKIKLLKESYSILSSEEERRLYDWSLARTE 160 (215)
Q Consensus 91 ~d~Y~vLgv~~--~As~~eIk~AYrkla~~~hpd~~------~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~~~ 160 (215)
.+||.+.|... ...++..+.-|....+++||+.. ....|.+.-.+|++||.+|.||-.|+.|=..+...+
T Consensus 8 ~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e 85 (168)
T KOG3192|consen 8 SRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKGQE 85 (168)
T ss_pred HHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 57899987654 44455555567666767776652 234677889999999999999999999998876543
No 71
>PF13446 RPT: A repeated domain in UCH-protein
Probab=91.09 E-value=0.48 Score=32.17 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=24.0
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHh
Q 028038 92 DHYGRLELRRGCSFDEVALAYKNKLE 117 (215)
Q Consensus 92 d~Y~vLgv~~~As~~eIk~AYrkla~ 117 (215)
+.|++|||+++.+.+.|-.+|+.+..
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999999877
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.82 E-value=0.34 Score=39.88 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=48.8
Q ss_pred cccccCcCCCCC--HHHHHHHHHHHHhcCCCCCCCcHH------HHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 93 HYGRLELRRGCS--FDEVALAYKNKLEGLKDQGLDEEE------ESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 93 ~Y~vLgv~~~As--~~eIk~AYrkla~~~hpd~~~~~~------a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
+....|..+.+. .+..+..|+.+.+.+|||+..... +-+.+..++.||.+|-||-+|..|=..+.
T Consensus 3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 344445444333 345789999999999999875322 23478889999999999999999998876
No 73
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=88.05 E-value=0.52 Score=42.34 Aligned_cols=55 Identities=24% Similarity=0.190 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCC-----cHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 102 GCSFDEVALAYKNKLEGLKDQGLD-----EEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 102 ~As~~eIk~AYrkla~~~hpd~~~-----~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
.++..+|+.+|+..++..|++... ....++.|++|.+||+||.+.++|..+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 367889999999999999998753 2234667999999999999866655655444
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=86.37 E-value=1.4 Score=37.23 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcC
Q 028038 100 RRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILS 144 (215)
Q Consensus 100 ~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLs 144 (215)
+++||.|||..|+.++..+|.-| ++.-..|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHH
Confidence 47899999999999999998444 345566889999654
No 75
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=82.00 E-value=1.9 Score=33.97 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=33.0
Q ss_pred cccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCC
Q 028038 93 HYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSS 145 (215)
Q Consensus 93 ~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsd 145 (215)
-..||||++..+.++|.+.|.+|-..-+|++.+. .--=.+|..|.+.|..
T Consensus 60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS---fYLQSKV~rAKErl~~ 109 (127)
T PF03656_consen 60 ARQILNVKEELSREEIQKRYKHLFKANDPSKGGS---FYLQSKVFRAKERLEQ 109 (127)
T ss_dssp HHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS----HHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC---HHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998888876432 2222457777777643
No 76
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=53.57 E-value=8.7 Score=18.56 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHcC
Q 028038 132 KIKLLKESYSILS 144 (215)
Q Consensus 132 ~f~~i~~Ay~vLs 144 (215)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 5788888888774
No 77
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=44.54 E-value=15 Score=27.06 Aligned_cols=23 Identities=26% Similarity=0.272 Sum_probs=17.2
Q ss_pred CcchHHHHHHHHHHHHHHhheee
Q 028038 191 PTRLVGYFMLGWLILSFVLSIAL 213 (215)
Q Consensus 191 ~~~~~~~~~lg~~vi~~~~si~~ 213 (215)
....-|+|++++|=+.||+++++
T Consensus 20 ~llRYGLf~GAIFQliCilAiI~ 42 (85)
T PF06783_consen 20 NLLRYGLFVGAIFQLICILAIIL 42 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHheee
Confidence 34556899999997777777764
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=40.82 E-value=89 Score=22.58 Aligned_cols=42 Identities=10% Similarity=-0.031 Sum_probs=28.1
Q ss_pred ccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 028038 94 YGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKL 135 (215)
Q Consensus 94 Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~ 135 (215)
-.+.|+++-|++.||+.|-++.++++.-...+.....+.|..
T Consensus 6 k~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~ 47 (88)
T COG5552 6 KELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEA 47 (88)
T ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHH
Confidence 356789999999999999888887763322222333445544
No 79
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=40.24 E-value=71 Score=23.06 Aligned_cols=40 Identities=5% Similarity=-0.021 Sum_probs=25.9
Q ss_pred ccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 028038 96 RLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKL 135 (215)
Q Consensus 96 vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~ 135 (215)
+-|+.+-|+.+||..|-.+-+++.---..+.....+.|..
T Consensus 8 L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~ 47 (78)
T PF10041_consen 8 LRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDR 47 (78)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHH
Confidence 4477889999999999888887763333233333444543
No 80
>COG4327 Predicted membrane protein [Function unknown]
Probab=32.50 E-value=25 Score=26.39 Aligned_cols=19 Identities=32% Similarity=0.686 Sum_probs=16.0
Q ss_pred CcchHHHHHHHHHHHHHHh
Q 028038 191 PTRLVGYFMLGWLILSFVL 209 (215)
Q Consensus 191 ~~~~~~~~~lg~~vi~~~~ 209 (215)
.+.+++.+++.|+++++++
T Consensus 17 nttli~~lL~vwflVSfvv 35 (101)
T COG4327 17 NTTLIAALLGVWFLVSFVV 35 (101)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3667888899999999988
No 81
>KOG2217 consensus U4/U6.U5 snRNP associated protein [RNA processing and modification]
Probab=32.10 E-value=53 Score=32.80 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Q 028038 108 VALAYKNKLEGLKDQGLDEEEESKKIKLLKES 139 (215)
Q Consensus 108 Ik~AYrkla~~~hpd~~~~~~a~~~f~~i~~A 139 (215)
-|.|||.|+|++|-.+......+++.++|.+-
T Consensus 629 pKEAyR~LShKFHGkgsGK~K~EKR~kr~~ee 660 (705)
T KOG2217|consen 629 PKEAYRLLSHKFHGKGSGKKKTEKRLKRIEEE 660 (705)
T ss_pred HHHHHHHHhHhhcCCCCchhHHHHHHHHHHHH
Confidence 47899999999998876666667777776653
No 82
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=29.75 E-value=1.3e+02 Score=20.45 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 110 LAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 110 ~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
+..|...+..||+. ...+.-+.|.+.|..|++.++...+|...
T Consensus 14 ~~~r~~~~~~~p~~----~~~eisk~l~~~Wk~ls~~eK~~y~~~a~ 56 (72)
T cd01388 14 KRHRRKVLQEYPLK----ENRAISKILGDRWKALSNEEKQPYYEEAK 56 (72)
T ss_pred HHHHHHHHHHCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555667764 23567788999999999988877666543
No 83
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=27.98 E-value=1.1e+02 Score=23.53 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCC-----cHHHHHHHHHHHHHHHHcCC
Q 028038 101 RGCSFDEVALAYKNKLEGLKDQGLD-----EEEESKKIKLLKESYSILSS 145 (215)
Q Consensus 101 ~~As~~eIk~AYrkla~~~hpd~~~-----~~~a~~~f~~i~~Ay~vLsd 145 (215)
+..+..+++.|.|..-+..|||-.. ....++-++.|+.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 3456778999999999999999543 12234457777766555543
No 84
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=27.15 E-value=17 Score=24.07 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=15.4
Q ss_pred CCCCcchHHHHHHHHHHHHHHhh
Q 028038 188 DVGPTRLVGYFMLGWLILSFVLS 210 (215)
Q Consensus 188 ~~~~~~~~~~~~lg~~vi~~~~s 210 (215)
||...+..|+++.|++.|.-++.
T Consensus 10 Dy~tLrigGLi~A~vlfi~Gi~i 32 (50)
T PF02038_consen 10 DYETLRIGGLIFAGVLFILGILI 32 (50)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhhccchHHHHHHHHHHHHH
Confidence 66667888888888774443333
No 85
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.77 E-value=66 Score=25.44 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=24.3
Q ss_pred ccccCcCCCCCHHHHHHHHHHHHhcCCCC
Q 028038 94 YGRLELRRGCSFDEVALAYKNKLEGLKDQ 122 (215)
Q Consensus 94 Y~vLgv~~~As~~eIk~AYrkla~~~hpd 122 (215)
-+||+|+...+.++|.+.|..|=..-.+.
T Consensus 62 ~qILnV~~~ln~eei~k~yehLFevNdks 90 (132)
T KOG3442|consen 62 QQILNVKEPLNREEIEKRYEHLFEVNDKS 90 (132)
T ss_pred hhHhCCCCCCCHHHHHHHHHHHHhccCcc
Confidence 48999999999999999999987654443
No 86
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=24.57 E-value=56 Score=24.11 Aligned_cols=13 Identities=46% Similarity=1.111 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHh
Q 028038 197 YFMLGWLILSFVL 209 (215)
Q Consensus 197 ~~~lg~~vi~~~~ 209 (215)
-++|||||++++.
T Consensus 29 kllL~WlvlsLl~ 41 (92)
T PF15128_consen 29 KLLLGWLVLSLLA 41 (92)
T ss_pred HHHHHHHHHHHHH
Confidence 4589999888764
No 87
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=24.37 E-value=1.7e+02 Score=18.65 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 110 LAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 110 ~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
+.+++..+..||+. ...+..+.+.+.|..|++.++....|..
T Consensus 13 ~~~~~~~~~~~~~~----~~~~i~~~~~~~W~~l~~~~k~~y~~~a 54 (66)
T cd00084 13 QEHRAEVKAENPGL----SVGEISKILGEMWKSLSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455555666663 2456788899999999987776665544
No 88
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.54 E-value=37 Score=26.56 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhheeecC
Q 028038 197 YFMLGWLILSFVLSIALNR 215 (215)
Q Consensus 197 ~~~lg~~vi~~~~si~~~r 215 (215)
+++.|++.+.++|+|.+.|
T Consensus 72 gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 72 GVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555665543
No 89
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=22.06 E-value=2.3e+02 Score=19.43 Aligned_cols=43 Identities=7% Similarity=0.017 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 109 ALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 109 k~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
.+.+|+.++..+|+. ...+.-+.|.+.|..|++.++...++..
T Consensus 13 ~~~~r~~~~~~~p~~----~~~eisk~~g~~Wk~ls~eeK~~y~~~A 55 (77)
T cd01389 13 RQDKHAQLKTENPGL----TNNEISRIIGRMWRSESPEVKAYYKELA 55 (77)
T ss_pred HHHHHHHHHHHCCCC----CHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 345566667777765 2356778899999999988776665544
No 90
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=21.77 E-value=54 Score=29.00 Aligned_cols=19 Identities=26% Similarity=0.618 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHc-----CChhHH
Q 028038 131 KKIKLLKESYSIL-----SSEEER 149 (215)
Q Consensus 131 ~~f~~i~~Ay~vL-----sdp~~R 149 (215)
.+.++||||+|+| +||.+|
T Consensus 128 RRLkKVNEAFE~LKRrT~~NPNQR 151 (284)
T KOG3960|consen 128 RRLKKVNEAFETLKRRTSSNPNQR 151 (284)
T ss_pred HHHHHHHHHHHHHHhhcCCCcccc
Confidence 4799999999997 677666
No 91
>PF03343 SART-1: SART-1 family; InterPro: IPR005011 This family of proteins appear to contain a leucine zipper [] and may therefore be a family of transcription factors.; PDB: 3PLV_C 3PLU_D.
Probab=21.65 E-value=31 Score=33.76 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 028038 109 ALAYKNKLEGLKDQGLDEEEESKKIKLLK 137 (215)
Q Consensus 109 k~AYrkla~~~hpd~~~~~~a~~~f~~i~ 137 (215)
|.|||.|+|+||=.+.+....+++.++|.
T Consensus 582 KEAfr~LShkFHGk~sGK~K~EKr~kkie 610 (613)
T PF03343_consen 582 KEAFRYLSHKFHGKGSGKNKTEKRLKKIE 610 (613)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHhhCCCCChhHHHHHHHHHH
Confidence 77999999999977655555555665554
No 92
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=21.40 E-value=1.4e+02 Score=27.26 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 128 EESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 128 ~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
...|.-|.|.+-|..|++.+||-.+|+.
T Consensus 89 HNSEISK~LG~~WK~Lse~EKrPFi~EA 116 (331)
T KOG0527|consen 89 HNSEISKRLGAEWKLLSEEEKRPFVDEA 116 (331)
T ss_pred hhHHHHHHHHHHHhhcCHhhhccHHHHH
Confidence 3467889999999999999999999954
No 93
>PF15102 TMEM154: TMEM154 protein family
Probab=21.34 E-value=83 Score=25.46 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHhheeecC
Q 028038 194 LVGYFMLGWLILSFVLSIALNR 215 (215)
Q Consensus 194 ~~~~~~lg~~vi~~~~si~~~r 215 (215)
++..++|++|+|++|+.|...|
T Consensus 62 lIP~VLLvlLLl~vV~lv~~~k 83 (146)
T PF15102_consen 62 LIPLVLLVLLLLSVVCLVIYYK 83 (146)
T ss_pred eHHHHHHHHHHHHHHHheeEEe
Confidence 4566777777777777666543
No 94
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.10 E-value=1.6e+02 Score=26.47 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=44.4
Q ss_pred cCcCCCCCCcccccCcCC-CCCHHHHHHHHHHHHhc-------CCCCCCC----cHHHHHHHHHHHHHHHHcCC
Q 028038 84 RGIAITDADHYGRLELRR-GCSFDEVALAYKNKLEG-------LKDQGLD----EEEESKKIKLLKESYSILSS 145 (215)
Q Consensus 84 ~~~~~~~~d~Y~vLgv~~-~As~~eIk~AYrkla~~-------~hpd~~~----~~~a~~~f~~i~~Ay~vLsd 145 (215)
=|...-..+.++-||++. ..+.+|+++-.+.++.+ .++|.+. ...-++.|+++.+||+.|++
T Consensus 75 WGlNY~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~ 148 (318)
T PF12725_consen 75 WGLNYYRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAE 148 (318)
T ss_pred hhhhcCCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 367777889999999998 89999988887777633 2333321 11236678888888888864
No 95
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=20.39 E-value=63 Score=26.28 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=7.7
Q ss_pred CcchHHHHHHHHHHH
Q 028038 191 PTRLVGYFMLGWLIL 205 (215)
Q Consensus 191 ~~~~~~~~~lg~~vi 205 (215)
...+++++++|.++|
T Consensus 77 ~~~iivgvi~~Vi~I 91 (179)
T PF13908_consen 77 ITGIIVGVICGVIAI 91 (179)
T ss_pred eeeeeeehhhHHHHH
Confidence 344555555555544
No 96
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=20.36 E-value=2.3e+02 Score=18.27 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=26.1
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 113 KNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 113 rkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
|...+.-||+. ...+..+.|.+.|..|++.++....+..
T Consensus 16 r~~~~~~~p~~----~~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 16 RPKLKKENPDA----SVTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33334446653 3466788999999999987776655543
No 97
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=20.07 E-value=92 Score=18.06 Aligned_cols=17 Identities=0% Similarity=0.001 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhcCCC
Q 028038 105 FDEVALAYKNKLEGLKD 121 (215)
Q Consensus 105 ~~eIk~AYrkla~~~hp 121 (215)
.++.|.+-|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 36788889999999883
Done!