Query 028038
Match_columns 215
No_of_seqs 299 out of 1593
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 08:08:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctp_A DNAJ homolog subfamily 99.8 3.5E-21 1.2E-25 137.7 8.3 69 88-156 4-72 (78)
2 1wjz_A 1700030A21RIK protein; 99.8 3.8E-21 1.3E-25 141.9 7.6 70 88-157 13-89 (94)
3 1hdj_A Human HSP40, HDJ-1; mol 99.8 7.4E-21 2.5E-25 135.7 8.4 67 91-157 3-69 (77)
4 2ctr_A DNAJ homolog subfamily 99.8 6.9E-21 2.4E-25 139.4 7.2 70 88-157 4-73 (88)
5 2yua_A Williams-beuren syndrom 99.8 5.5E-21 1.9E-25 142.9 6.7 72 88-159 14-86 (99)
6 2cug_A Mkiaa0962 protein; DNAJ 99.8 7.5E-21 2.6E-25 139.2 7.0 69 88-156 14-82 (88)
7 2dn9_A DNAJ homolog subfamily 99.8 8.2E-21 2.8E-25 135.9 6.6 69 88-156 4-73 (79)
8 2ctq_A DNAJ homolog subfamily 99.8 6.7E-21 2.3E-25 145.5 6.0 73 88-160 17-90 (112)
9 2ej7_A HCG3 gene; HCG3 protein 99.8 2.6E-20 8.9E-25 134.2 7.5 67 90-156 8-76 (82)
10 2och_A Hypothetical protein DN 99.8 4.5E-20 1.5E-24 130.4 7.1 65 89-155 6-70 (73)
11 2ctw_A DNAJ homolog subfamily 99.8 1.1E-19 3.6E-24 138.2 8.4 69 88-156 14-83 (109)
12 2lgw_A DNAJ homolog subfamily 99.8 8.1E-20 2.8E-24 136.8 7.3 68 91-158 2-71 (99)
13 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 6E-20 2.1E-24 139.3 6.1 74 84-157 8-86 (109)
14 2dmx_A DNAJ homolog subfamily 99.8 6.6E-20 2.2E-24 135.0 5.8 68 90-157 8-77 (92)
15 2o37_A Protein SIS1; HSP40, J- 99.8 1.2E-19 4.2E-24 133.8 6.2 69 88-158 5-73 (92)
16 1bq0_A DNAJ, HSP40; chaperone, 99.8 5E-20 1.7E-24 138.5 3.3 68 90-157 2-70 (103)
17 2l6l_A DNAJ homolog subfamily 99.7 9.7E-19 3.3E-23 140.2 6.3 72 88-159 7-85 (155)
18 2ys8_A RAB-related GTP-binding 99.7 2.5E-19 8.6E-24 131.8 2.5 61 90-150 26-86 (90)
19 3apq_A DNAJ homolog subfamily 99.7 4.4E-18 1.5E-22 140.5 6.5 68 91-158 2-70 (210)
20 3lz8_A Putative chaperone DNAJ 99.7 1.2E-18 4.1E-23 155.6 0.0 69 89-157 26-94 (329)
21 3hho_A CO-chaperone protein HS 99.7 8.5E-18 2.9E-22 137.6 4.6 68 90-157 3-78 (174)
22 1fpo_A HSC20, chaperone protei 99.7 2.1E-17 7.2E-22 135.0 5.0 66 92-157 2-75 (171)
23 1gh6_A Large T antigen; tumor 99.7 2.2E-18 7.4E-23 132.3 -1.5 61 91-154 8-70 (114)
24 1n4c_A Auxilin; four helix bun 99.7 7.3E-18 2.5E-22 138.9 1.3 70 83-152 109-182 (182)
25 1iur_A KIAA0730 protein; DNAJ 99.7 1E-17 3.4E-22 123.0 1.4 61 89-149 14-76 (88)
26 3bvo_A CO-chaperone protein HS 99.7 6.7E-17 2.3E-21 135.7 5.7 68 90-157 42-117 (207)
27 1faf_A Large T antigen; J doma 99.6 3.4E-17 1.2E-21 117.7 2.3 59 91-152 11-71 (79)
28 3ag7_A Putative uncharacterize 99.6 3.5E-17 1.2E-21 124.0 2.4 65 82-147 32-104 (106)
29 2qwo_B Putative tyrosine-prote 99.6 5.4E-17 1.8E-21 120.1 2.8 65 81-145 23-91 (92)
30 2pf4_E Small T antigen; PP2A, 99.6 1.5E-17 5.2E-22 136.2 -0.8 63 91-156 11-75 (174)
31 3uo3_A J-type CO-chaperone JAC 99.6 1.1E-16 3.9E-21 131.8 3.9 65 90-156 10-81 (181)
32 2guz_A Mitochondrial import in 99.5 4.8E-16 1.6E-20 109.4 0.5 56 91-149 14-70 (71)
33 3apo_A DNAJ homolog subfamily 99.5 1.6E-15 5.5E-20 146.9 1.0 69 89-157 19-88 (780)
34 2y4t_A DNAJ homolog subfamily 99.1 2.5E-11 8.5E-16 106.4 4.8 65 90-154 381-449 (450)
35 2guz_B Mitochondrial import in 98.5 9.6E-08 3.3E-12 65.9 4.1 51 92-145 5-58 (65)
36 2pzi_A Probable serine/threoni 93.8 0.037 1.3E-06 52.5 3.7 53 83-142 621-675 (681)
37 1uzc_A Hypothetical protein FL 29.8 1E+02 0.0036 20.6 5.0 55 102-158 11-68 (71)
38 4a3n_A Transcription factor SO 27.2 1.2E+02 0.0042 19.1 5.7 42 109-154 14-55 (71)
39 1i11_A Transcription factor SO 22.3 1.4E+02 0.0048 19.6 4.6 42 110-155 17-58 (81)
40 2zxe_G FXYD10, phospholemman-l 21.4 25 0.00087 24.1 0.5 25 188-212 15-39 (74)
41 2ls4_A High affinity copper up 26.4 21 0.0007 19.7 0.0 12 201-212 3-14 (26)
42 1cf7_A Protein (transcription 20.9 41 0.0014 23.0 1.5 43 102-154 9-51 (76)
No 1
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.5e-21 Score=137.71 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=65.2
Q ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 88 ITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 88 ~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
....|||+||||+++|+.++||+|||++++++|||++..+.+.+.|++|++||++|+||.+|+.||..+
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 72 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFG 72 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 345799999999999999999999999999999999988889999999999999999999999999875
No 2
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.84 E-value=3.8e-21 Score=141.88 Aligned_cols=70 Identities=19% Similarity=0.294 Sum_probs=64.7
Q ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCc-------HHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 88 ITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDE-------EEESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 88 ~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~-------~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
+...|||+||||+++|+.+|||+|||++++++|||+++. ..+.++|++|++||++|+||.+|+.||..+.
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 456799999999999999999999999999999999763 5678999999999999999999999999875
No 3
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.83 E-value=7.4e-21 Score=135.67 Aligned_cols=67 Identities=28% Similarity=0.414 Sum_probs=63.7
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
.|||+||||+++|+.++||+|||++++++|||+++.+.+.+.|+.|++||++|+||.+|+.||....
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 69 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGE 69 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 5899999999999999999999999999999999877889999999999999999999999998753
No 4
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6.9e-21 Score=139.37 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=65.8
Q ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 88 ITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 88 ~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
....|||+||||+++|+.+|||+|||++++++|||+++.+.+.++|++|++||++|+||.+|+.||....
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 3457999999999999999999999999999999999988899999999999999999999999998754
No 5
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.5e-21 Score=142.86 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=65.9
Q ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHhccc
Q 028038 88 ITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSLART 159 (215)
Q Consensus 88 ~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~~ 159 (215)
+...|||+||||+++|+.++||+|||+|++++|||+++ .+.+.++|++|++||+||+||.+|+.||..|...
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 86 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSD 86 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence 34569999999999999999999999999999999986 5778899999999999999999999999987543
No 6
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=7.5e-21 Score=139.19 Aligned_cols=69 Identities=26% Similarity=0.334 Sum_probs=65.0
Q ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 88 ITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 88 ~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
....|||+||||+++|+.++||+|||++++++|||+++.+.+.++|++|++||++|+||.+|+.||...
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g 82 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYG 82 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 345799999999999999999999999999999999988888999999999999999999999999874
No 7
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=8.2e-21 Score=135.95 Aligned_cols=69 Identities=26% Similarity=0.323 Sum_probs=64.0
Q ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 88 ITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 88 ~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
....|||+||||+++|+.++||+|||++++++|||+++ .+.+.++|++|++||++|+||.+|+.||...
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 73 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG 73 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence 44679999999999999999999999999999999987 4678899999999999999999999999864
No 8
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.7e-21 Score=145.48 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=66.8
Q ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccc
Q 028038 88 ITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSLARTE 160 (215)
Q Consensus 88 ~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~~~ 160 (215)
....|||+||||+++|+.++||+|||++++++|||+++ .+.+.++|++|++||+||+||.+|+.||..+....
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 90 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM 90 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence 34579999999999999999999999999999999987 57789999999999999999999999999876543
No 9
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-20 Score=134.22 Aligned_cols=67 Identities=27% Similarity=0.389 Sum_probs=62.4
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCc--HHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDE--EEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~--~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
..|||+||||+++|+.++||+|||++++++|||+++. +.+.++|++|++||++|+||.+|+.||...
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 4699999999999999999999999999999999874 467889999999999999999999999864
No 10
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.81 E-value=4.5e-20 Score=130.37 Aligned_cols=65 Identities=22% Similarity=0.409 Sum_probs=60.3
Q ss_pred CCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 89 TDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 89 ~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
...|||+||||+++|+.++||+|||++++++|||+++.. .+.|++|++||++|+||.+|+.||..
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~--~~~f~~i~~Ay~~L~d~~~R~~YD~~ 70 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG--AEQFKQISQAYEVLSDEKKRQIYDQG 70 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC--HHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH--HHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 457999999999999999999999999999999997643 57899999999999999999999975
No 11
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=1.1e-19 Score=138.24 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=64.0
Q ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 88 ITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 88 ~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
....|||+||||+++|+.+|||+|||+|++++|||+++ .+.+.++|++|++||++|+||.+|+.||...
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g 83 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYG 83 (109)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTC
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 34579999999999999999999999999999999987 4778999999999999999999999999764
No 12
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.80 E-value=8.1e-20 Score=136.80 Aligned_cols=68 Identities=29% Similarity=0.406 Sum_probs=63.1
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCc--HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcc
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDE--EEESKKIKLLKESYSILSSEEERRLYDWSLAR 158 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~--~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~ 158 (215)
.|||+||||+++|+.+|||+|||++++++|||+++. +.+.+.|++|++||++|+||.+|+.||.....
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~ 71 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGRE 71 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 489999999999999999999999999999999874 56889999999999999999999999997643
No 13
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.79 E-value=6e-20 Score=139.29 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=67.1
Q ss_pred cCcCCCCCCcccccCcCCCC-CHHHHHHHHHHHHhcCCCCCCCc----HHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 84 RGIAITDADHYGRLELRRGC-SFDEVALAYKNKLEGLKDQGLDE----EEESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 84 ~~~~~~~~d~Y~vLgv~~~A-s~~eIk~AYrkla~~~hpd~~~~----~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
........|||+||||+++| +.++||+|||++++.+|||+++. +.+.++|++|++||++|+||.+|+.||..+.
T Consensus 8 ~~~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 8 PELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTSTTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 34445678999999999999 99999999999999999998874 6778999999999999999999999999874
No 14
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.6e-20 Score=135.02 Aligned_cols=68 Identities=29% Similarity=0.422 Sum_probs=63.2
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCc--HHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDE--EEESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~--~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
..|||+||||+++|+.++||+|||+|++++|||+++. +.+.++|++|++||++|+||.+|+.||....
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 4699999999999999999999999999999999874 5788999999999999999999999998753
No 15
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.2e-19 Score=133.82 Aligned_cols=69 Identities=17% Similarity=0.314 Sum_probs=62.2
Q ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcc
Q 028038 88 ITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSLAR 158 (215)
Q Consensus 88 ~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~ 158 (215)
+...|||+||||+++|+.+|||+|||++++++|||+++.. .++|++|++||++|+||.+|+.||.....
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 73 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD--TEKFKEISEAFEILNDPQKREIYDQYGLE 73 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC--HHHHHHHHHHHHHHTSHHHHHHHHHHCHH
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh--HHHHHHHHHHHHHHCCHHHHHHHHHHCHH
Confidence 3467999999999999999999999999999999997643 46999999999999999999999987643
No 16
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.78 E-value=5e-20 Score=138.50 Aligned_cols=68 Identities=25% Similarity=0.333 Sum_probs=63.1
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
..|||+||||+++|+.++||+|||+|++++|||+++ .+.++++|++|++||++|+||.+|+.||....
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence 369999999999999999999999999999999987 46788999999999999999999999998654
No 17
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.75 E-value=9.7e-19 Score=140.24 Aligned_cols=72 Identities=18% Similarity=0.310 Sum_probs=64.8
Q ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcH-------HHHHHHHHHHHHHHHcCChhHHHHHHHHhccc
Q 028038 88 ITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEE-------EESKKIKLLKESYSILSSEEERRLYDWSLART 159 (215)
Q Consensus 88 ~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~-------~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~~ 159 (215)
....|||+||||+++|+.++||+|||++++++|||++... .+.++|++|++||++|+||.+|+.||..+...
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~ 85 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCED 85 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchh
Confidence 4457999999999999999999999999999999998643 36789999999999999999999999887654
No 18
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-19 Score=131.78 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=58.0
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHH
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERR 150 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~ 150 (215)
..|||+||||+++|+.+|||+|||+|++++|||+++.+.+.++|++|++||++|+|+.+|+
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence 4799999999999999999999999999999999988888999999999999999998875
No 19
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.72 E-value=4.4e-18 Score=140.52 Aligned_cols=68 Identities=19% Similarity=0.271 Sum_probs=63.3
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcc
Q 028038 91 ADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSLAR 158 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~~ 158 (215)
.|||+||||+++|+.+|||+|||++++++|||+++ .+.+.++|++|++||++|+||.+|+.||.....
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~ 70 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 70 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Confidence 48999999999999999999999999999999985 567889999999999999999999999987543
No 20
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.70 E-value=1.2e-18 Score=155.57 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=0.0
Q ss_pred CCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 89 TDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 89 ~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
...|||+||||+++|+.+|||+|||+|+++||||+++.+.++++|++|++||++|+||++|+.||....
T Consensus 26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 347999999999999999999999999999999999888899999999999999999999999998743
No 21
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.69 E-value=8.5e-18 Score=137.61 Aligned_cols=68 Identities=10% Similarity=0.136 Sum_probs=61.5
Q ss_pred CCCcccccCcCCCCC--HHHHHHHHHHHHhcCCCCCCCcH------HHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 90 DADHYGRLELRRGCS--FDEVALAYKNKLEGLKDQGLDEE------EESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As--~~eIk~AYrkla~~~hpd~~~~~------~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
..|||+||||+++++ .++||++||++++++|||+++.. .+.++|+.|++||+||+||.+|+.||..+.
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 469999999999998 99999999999999999997632 267899999999999999999999999875
No 22
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.68 E-value=2.1e-17 Score=134.97 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=60.5
Q ss_pred CcccccCcCCCC--CHHHHHHHHHHHHhcCCCCCCCcH------HHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 92 DHYGRLELRRGC--SFDEVALAYKNKLEGLKDQGLDEE------EESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 92 d~Y~vLgv~~~A--s~~eIk~AYrkla~~~hpd~~~~~------~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
|||+||||++++ +.++||++||++++.+|||+++.. .+.++|+.|++||+||+||.+|+.||..+.
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 799999999999 999999999999999999987632 356799999999999999999999999875
No 23
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.67 E-value=2.2e-18 Score=132.28 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=57.3
Q ss_pred CCcccccCcCCCCCH--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 028038 91 ADHYGRLELRRGCSF--DEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDW 154 (215)
Q Consensus 91 ~d~Y~vLgv~~~As~--~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 154 (215)
.|||+||||+++|+. ++||+|||+|++++|||+++. .++|++|++||+||+||.+|+.||.
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~ 70 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPD 70 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhh
Confidence 489999999999999 999999999999999999775 5789999999999999999999984
No 24
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.67 E-value=7.3e-18 Score=138.90 Aligned_cols=70 Identities=9% Similarity=0.180 Sum_probs=61.4
Q ss_pred HcCcCCCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcH----HHHHHHHHHHHHHHHcCChhHHHHH
Q 028038 83 LRGIAITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEE----EESKKIKLLKESYSILSSEEERRLY 152 (215)
Q Consensus 83 l~~~~~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~----~a~~~f~~i~~Ay~vLsdp~~R~~Y 152 (215)
+....|...|||+||||+++|+.++||+|||++++.+|||+++.. .++++|++|++||++|+|+.+|+.|
T Consensus 109 l~~vl~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 109 MHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp GGGGSCTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHhcCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 334446567999999999999999999999999999999997643 2789999999999999999999765
No 25
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.66 E-value=1e-17 Score=123.02 Aligned_cols=61 Identities=10% Similarity=-0.059 Sum_probs=55.4
Q ss_pred CCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCc--HHHHHHHHHHHHHHHHcCChhHH
Q 028038 89 TDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDE--EEESKKIKLLKESYSILSSEEER 149 (215)
Q Consensus 89 ~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~--~~a~~~f~~i~~Ay~vLsdp~~R 149 (215)
...++|+||||+++|+.+|||+|||+|++++|||+++. +.+.++|++|++||++|+|...|
T Consensus 14 ~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 34689999999999999999999999999999999885 46889999999999999987655
No 26
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.65 E-value=6.7e-17 Score=135.73 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=60.5
Q ss_pred CCCcccccCcCCC--CCHHHHHHHHHHHHhcCCCCCCCc------HHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 90 DADHYGRLELRRG--CSFDEVALAYKNKLEGLKDQGLDE------EEESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 90 ~~d~Y~vLgv~~~--As~~eIk~AYrkla~~~hpd~~~~------~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
..|||+||||+++ ++.++||++||+|++++|||+++. ..+.++|+.|++||+||+||.+|+.||..+.
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~ 117 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH 117 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 3599999999986 799999999999999999999763 2356789999999999999999999998764
No 27
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.64 E-value=3.4e-17 Score=117.69 Aligned_cols=59 Identities=17% Similarity=0.127 Sum_probs=54.3
Q ss_pred CCcccccCcCCC--CCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHH
Q 028038 91 ADHYGRLELRRG--CSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLY 152 (215)
Q Consensus 91 ~d~Y~vLgv~~~--As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~Y 152 (215)
.++|+||||+++ ++.++||+|||++++++|||+++. .++|++|++||++|+|+.+|..+
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~---~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC---HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHHhhHHHHHHH
Confidence 478999999999 999999999999999999999764 57899999999999999999863
No 28
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.64 E-value=3.5e-17 Score=124.02 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=55.8
Q ss_pred HHcCcCCCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcH--------HHHHHHHHHHHHHHHcCChh
Q 028038 82 ALRGIAITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEE--------EESKKIKLLKESYSILSSEE 147 (215)
Q Consensus 82 ~l~~~~~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~--------~a~~~f~~i~~Ay~vLsdp~ 147 (215)
.+...-+.+.|||+|||++. |+.++||+|||++++++|||+++.. .|+++|+.|++||++|+|+.
T Consensus 32 ~l~~~l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 32 TLQYILWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TGGGTSCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 33444567789999999996 9999999999999999999986531 46889999999999999985
No 29
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.64 E-value=5.4e-17 Score=120.08 Aligned_cols=65 Identities=6% Similarity=0.096 Sum_probs=54.8
Q ss_pred HHHcCcCCCCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcH----HHHHHHHHHHHHHHHcCC
Q 028038 81 RALRGIAITDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEE----EESKKIKLLKESYSILSS 145 (215)
Q Consensus 81 ~~l~~~~~~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~----~a~~~f~~i~~Ay~vLsd 145 (215)
..+...-+...++|++|||+++|+.+|||+|||++++++|||+++.. .|+++|+.|++||+||.+
T Consensus 23 ~~l~~~L~~~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 23 STMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp HHGGGTSCTTCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 34444445446899999999999999999999999999999987632 478899999999999964
No 30
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.63 E-value=1.5e-17 Score=136.17 Aligned_cols=63 Identities=14% Similarity=0.062 Sum_probs=55.9
Q ss_pred CCcccccCcCCCCC--HHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 91 ADHYGRLELRRGCS--FDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 91 ~d~Y~vLgv~~~As--~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
.|||+||||+++|+ .+|||+|||++++++|||+++. +++|++|++||++|+||.+|+.||..-
T Consensus 11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G 75 (174)
T 2pf4_E 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFG 75 (174)
T ss_dssp HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGG
T ss_pred ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccC
Confidence 58999999999999 6999999999999999999765 478999999999999999999999753
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.63 E-value=1.1e-16 Score=131.79 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=60.2
Q ss_pred CCCccccc------CcCC-CCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 028038 90 DADHYGRL------ELRR-GCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWSL 156 (215)
Q Consensus 90 ~~d~Y~vL------gv~~-~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l 156 (215)
..|||+|| |+++ +|+.++||+|||++++++|||+++. +.++|+.|++||+||+||.+|+.||..+
T Consensus 10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 46999999 4665 9999999999999999999999876 7789999999999999999999999987
No 32
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.55 E-value=4.8e-16 Score=109.39 Aligned_cols=56 Identities=7% Similarity=-0.019 Sum_probs=50.2
Q ss_pred CCcccccCcCC-CCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHH
Q 028038 91 ADHYGRLELRR-GCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEER 149 (215)
Q Consensus 91 ~d~Y~vLgv~~-~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R 149 (215)
.++|+||||++ +++.++||+|||+|++++|||+++. .+.|++|++||++|+|+..|
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~---~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS---PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC---HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHhhhhhc
Confidence 58999999999 7999999999999999999999643 45999999999999987654
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.51 E-value=1.6e-15 Score=146.92 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=40.4
Q ss_pred CCCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHhc
Q 028038 89 TDADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLD-EEEESKKIKLLKESYSILSSEEERRLYDWSLA 157 (215)
Q Consensus 89 ~~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~l~ 157 (215)
.+.|||+||||+++|+.+|||+|||++++++|||+++ .+.+.++|++|++||++|+||.+|+.||....
T Consensus 19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~ 88 (780)
T 3apo_A 19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 88 (780)
T ss_dssp ----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence 3569999999999999999999999999999999985 56788999999999999999999999998653
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.14 E-value=2.5e-11 Score=106.40 Aligned_cols=65 Identities=23% Similarity=0.315 Sum_probs=55.7
Q ss_pred CCCcccccCcCCCCCHHHHHHHHHHHHhcCCCCCCCcH----HHHHHHHHHHHHHHHcCChhHHHHHHH
Q 028038 90 DADHYGRLELRRGCSFDEVALAYKNKLEGLKDQGLDEE----EESKKIKLLKESYSILSSEEERRLYDW 154 (215)
Q Consensus 90 ~~d~Y~vLgv~~~As~~eIk~AYrkla~~~hpd~~~~~----~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 154 (215)
..++|.+||+.+.++.++|+++|+++++.+|||..+.+ .+++.|+.|.+||++|+|+++|+.||.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 45899999999999999999999999999999987753 488899999999999999999999996
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.49 E-value=9.6e-08 Score=65.90 Aligned_cols=51 Identities=8% Similarity=-0.001 Sum_probs=43.6
Q ss_pred CcccccCcCCC---CCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCC
Q 028038 92 DHYGRLELRRG---CSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSS 145 (215)
Q Consensus 92 d~Y~vLgv~~~---As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsd 145 (215)
+-|.||||+++ ++.++|+++||+|....|||+... .....+|++|+++|..
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS---~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS---FYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHHHH
Confidence 45899999999 999999999999999999998443 4467789999999853
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.81 E-value=0.037 Score=52.46 Aligned_cols=53 Identities=11% Similarity=-0.011 Sum_probs=40.6
Q ss_pred HcCcCCCCCCcccccCcCCCCCH--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHH
Q 028038 83 LRGIAITDADHYGRLELRRGCSF--DEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSI 142 (215)
Q Consensus 83 l~~~~~~~~d~Y~vLgv~~~As~--~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~v 142 (215)
++-+..+..|||.+||++.+... .+|++|||++++..+.+ .+++..|..|+.|
T Consensus 621 l~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 621 LDWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV 675 (681)
T ss_dssp HHHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred HHHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence 44444556679999999776655 67999999999975444 4688899988876
No 37
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=29.79 E-value=1e+02 Score=20.56 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH--HHHHHcCChhHH-HHHHHHhcc
Q 028038 102 GCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLK--ESYSILSSEEER-RLYDWSLAR 158 (215)
Q Consensus 102 ~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~--~Ay~vLsdp~~R-~~YD~~l~~ 158 (215)
-++.+|.+.+|++|....+-+..-. =++..+.|. .-|.+|.++..| ..|+..+..
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~~t--We~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~ 68 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSNAS--WEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQ 68 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTTCC--HHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCC--HHHHHHHHccCccccccCCHHHHHHHHHHHHHH
Confidence 5689999999999996664332211 111222232 368888885544 558776543
No 38
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=27.19 E-value=1.2e+02 Score=19.15 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 028038 109 ALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDW 154 (215)
Q Consensus 109 k~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 154 (215)
.+.+|..++..||+.. ..+.-+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH----NAELSKMLGKSWKALTLAEKRPFVEE 55 (71)
T ss_dssp HHHHHHHHHTTCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3456666777788753 35677889999999997776655543
No 39
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=22.34 E-value=1.4e+02 Score=19.62 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 028038 110 LAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDWS 155 (215)
Q Consensus 110 ~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 155 (215)
+.+|..++..||+.. ..+.-+.|.+.|.-|++.++...++..
T Consensus 17 ~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~A 58 (81)
T 1i11_A 17 KDERRKILQAFPDMH----NSNISKILGSRWKAMTNLEKQPYYEEQ 58 (81)
T ss_dssp HHHHHHHHTTCSSCC----HHHHHHHHHHHHTTSCSGGGHHHHHHH
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHhhhhhCCHHHHHHHHHHH
Confidence 445666666677652 356778899999999988877666644
No 40
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=21.41 E-value=25 Score=24.13 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=17.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhee
Q 028038 188 DVGPTRLVGYFMLGWLILSFVLSIA 212 (215)
Q Consensus 188 ~~~~~~~~~~~~lg~~vi~~~~si~ 212 (215)
||...|..|+++.++++|.-++.|.
T Consensus 15 DY~tLRigGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 15 DYYRLRVVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHheeccchhHHHHHHHHHHHHH
Confidence 6777888888888888554444443
No 41
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=26.39 E-value=21 Score=19.65 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=7.0
Q ss_pred HHHHHHHHhhee
Q 028038 201 GWLILSFVLSIA 212 (215)
Q Consensus 201 g~~vi~~~~si~ 212 (215)
||++|++++..+
T Consensus 3 g~l~iavvlGa~ 14 (26)
T 2ls4_A 3 GYLCIAVAAGAG 14 (26)
Confidence 566666665543
No 42
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=20.85 E-value=41 Score=22.96 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 028038 102 GCSFDEVALAYKNKLEGLKDQGLDEEEESKKIKLLKESYSILSSEEERRLYDW 154 (215)
Q Consensus 102 ~As~~eIk~AYrkla~~~hpd~~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 154 (215)
+.|-..+.+.|-++.... |+.. ..|++|-+.|.-.++|+.||-
T Consensus 9 ~~SL~~lt~kFi~l~~~~-~~~~---------i~l~~aa~~L~v~~kRRiYDI 51 (76)
T 1cf7_A 9 EKSLGLLTTKFVSLLQEA-KDGV---------LDLKLAADTLAVRQKRRIYDI 51 (76)
T ss_dssp TTCHHHHHHHHHHHHHHS-STTE---------EEHHHHHHHTTTCCTHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhC-CCCc---------CcHHHHHHHhCCccceehhhH
Confidence 345555666666555432 2221 126677777775579999994
Done!