BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028040
(215 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8X2R2|ZFPL1_CAEBR Zinc finger protein-like 1 homolog OS=Caenorhabditis briggsae
GN=CBG06644 PE=3 SV=1
Length = 319
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 77/142 (54%), Gaps = 11/142 (7%)
Query: 1 MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQ 58
M +CKC RK T L+C+ H+V VC C+ H CVV++Y W+ D +YD P C C
Sbjct: 1 MGLCKCPKRKVTNLFCYEHRVNVCEFCL-VDNHPNCVVQSYLNWLTDQDYD--PNCSLCH 57
Query: 59 AVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSG 118
L + ET RL CLH++H C SFPP TAPAGY CP CS ++PP N
Sbjct: 58 TTLTQ---GETIRLNCLHLLHWRCFDDWAASFPPTTAPAGYRCPCCSQEVFPPIN---EV 111
Query: 119 SRLHSLLKEAIMLTGLEKNLFG 140
S L L+E + + +N G
Sbjct: 112 SPLIEKLREQLKQSNWARNALG 133
>sp|Q9N4Y9|ZFPL1_CAEEL Zinc finger protein-like 1 homolog OS=Caenorhabditis elegans
GN=Y45G12B.2 PE=3 SV=1
Length = 309
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 93/183 (50%), Gaps = 20/183 (10%)
Query: 1 MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQ 58
M +CKC RK T L+C+ H+V VC C+ H CVV++Y W+ D +YD P C C+
Sbjct: 1 MGLCKCPKRKVTNLFCYEHRVNVCEFCL-VDNHPNCVVQSYLTWLTDQDYD--PNCSLCK 57
Query: 59 AVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSG 118
L E +T RL CLH++H C +FP TAPAGY CP CS ++PP N
Sbjct: 58 TTLAE---GDTIRLNCLHLLHWKCFDEWAANFPATTAPAGYRCPCCSQEVFPPIN---EV 111
Query: 119 SRLHSLLKEAIMLTGLEKNLFG-------NHPV-SLAVAESRGPPPAFASDPIVNVNASS 170
S L L+E + + + G N PV S A + + P P+ N N SS
Sbjct: 112 SPLIEKLREQLKQSNWARAALGLPTLPELNRPVPSPAPPQLKNAPVMHKEVPVHN-NRSS 170
Query: 171 SPS 173
+P+
Sbjct: 171 TPA 173
>sp|Q0VFM0|ZFPL1_XENTR Zinc finger protein-like 1 OS=Xenopus tropicalis GN=zfpl1 PE=2 SV=1
Length = 320
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 8/116 (6%)
Query: 1 MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQ 58
M +CKC RK T L+CF H+V VC C+ H C+V++Y +W+ D +Y+ P C C
Sbjct: 1 MGLCKCPKRKVTNLFCFEHRVNVCEHCL-VANHAKCIVQSYLQWLQDSDYN--PNCRLCN 57
Query: 59 AVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNV 114
+L S ET RL C + H SCL PP+TAPAGY CP C ++PP N+
Sbjct: 58 TLL---SSKETARLVCYDLFHWSCLNDLATQLPPNTAPAGYRCPSCQGPVFPPSNL 110
>sp|A1L2S8|ZFPL1_XENLA Zinc finger protein-like 1 OS=Xenopus laevis GN=zfpl1 PE=2 SV=1
Length = 320
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 8/116 (6%)
Query: 1 MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQ 58
M +CKC RK T L+CF H+V VC C+ H C+V++Y +W+ D +Y+ P C C
Sbjct: 1 MGLCKCPKRKVTNLFCFEHRVNVCEHCL-VANHAKCIVQSYLQWLQDSDYN--PNCRLCN 57
Query: 59 AVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNV 114
+L S ET RL C + H SCL PP+TAPAGY CP C ++PP N+
Sbjct: 58 TLL---SSKETARLVCYDLFHWSCLNDLATQQPPNTAPAGYRCPSCQGPVFPPNNL 110
>sp|Q2YDD3|ZFPL1_BOVIN Zinc finger protein-like 1 OS=Bos taurus GN=ZFPL1 PE=2 SV=1
Length = 312
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 13/194 (6%)
Query: 1 MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQ 58
M +CKC RK T L+CF H+V VC C+ H C+V++Y +W+ D +Y+ P C C
Sbjct: 1 MGLCKCPKRKVTNLFCFEHRVNVCEHCL-VANHAKCIVQSYLQWLQDSDYN--PNCRLCN 57
Query: 59 AVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSG 118
L + ETTRL C + H +CL P +TAPAGY CP CS I+PP N+
Sbjct: 58 IPL---AARETTRLICYDLFHWACLNERAAQLPRNTAPAGYQCPSCSGPIFPPTNL---A 111
Query: 119 SRLHSLLKEAIMLTGLEKNLFGNHPVSLAVAESRGPPPAFASDPIVNVNASSSPSKDGIN 178
+ S L+E + + G + V+ P + NAS SP ++
Sbjct: 112 GPVASALREKLATVNWARAGLGLPLIDELVSPEPEPLNTSEFSDWSSFNASGSPEQE--E 169
Query: 179 ITEGYTAPSTVSEI 192
AP+ S++
Sbjct: 170 TASASAAPAFYSQV 183
>sp|O95159|ZFPL1_HUMAN Zinc finger protein-like 1 OS=Homo sapiens GN=ZFPL1 PE=1 SV=2
Length = 310
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 1 MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQ 58
M +CKC RK T L+CF H+V VC C+ H C+V++Y +W+ D +Y+ P C C
Sbjct: 1 MGLCKCPKRKVTNLFCFEHRVNVCEHCLVA-NHAKCIVQSYLQWLQDSDYN--PNCRLCN 57
Query: 59 AVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSG 118
L + ETTRL C + H +CL P +TAPAGY CP C+ I+PP N+
Sbjct: 58 IPL---ASRETTRLVCYDLFHWACLNERAAQLPRNTAPAGYQCPSCNGPIFPPTNL---A 111
Query: 119 SRLHSLLKEAIMLTGLEKNLFGNHPVSLAVAESRGPPPAFASD--PIVNVNASSSPSKDG 176
+ S L+E + + G + V+ P P SD + NASS+P +
Sbjct: 112 GPVASALREKLATVNWARAGLGLPLIDEVVSPE--PEPLNTSDFSDWSSFNASSTPGPEE 169
Query: 177 IN 178
++
Sbjct: 170 VD 171
>sp|Q9DB43|ZFPL1_MOUSE Zinc finger protein-like 1 OS=Mus musculus GN=Zfpl1 PE=2 SV=1
Length = 310
Score = 93.6 bits (231), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 8/116 (6%)
Query: 1 MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQ 58
M +CKC RK T L+CF H+V VC C+ H C+V++Y +W+ D +Y+ P C C
Sbjct: 1 MGLCKCPKRKVTNLFCFEHRVNVCEHCL-VANHAKCIVQSYLQWLQDSDYN--PNCRLCN 57
Query: 59 AVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNV 114
L + ETTRL C + H +C+ P +TAPAGY CP C+ I+PP N+
Sbjct: 58 TPL---ASRETTRLVCYDLFHWACINERAAQLPRNTAPAGYQCPSCNGPIFPPANL 110
>sp|A7S7Z9|ZFPL1_NEMVE Zinc finger protein-like 1 homolog OS=Nematostella vectensis
GN=zfpl1 PE=3 SV=1
Length = 252
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 8/116 (6%)
Query: 1 MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQ 58
M +CKC +K T +CF H+V VC C+ H C+V++Y W+ D +Y+ P C C
Sbjct: 1 MGLCKCPKKKVTNQFCFEHRVNVCEYCLV-SSHSRCIVKSYLHWLQDSDYN--PVCTLCN 57
Query: 59 AVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNV 114
L S + RL C V H SC+ + +S PP+TAPAGY CP C I+PP+ +
Sbjct: 58 GNL---SDGDVVRLICYDVFHLSCINNFAQSLPPNTAPAGYTCPNCKNGIFPPEKM 110
>sp|P62447|ZFPL1_DANRE Zinc finger protein-like 1 OS=Danio rerio GN=zfpl1 PE=2 SV=1
Length = 317
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 73/131 (55%), Gaps = 11/131 (8%)
Query: 1 MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQ 58
M +CKC +K T L+CF H+V VC C+ H C+V++Y +W+ D +Y+ P C C
Sbjct: 1 MGLCKCPKKKVTNLFCFKHRVNVCEHCLV-SNHNKCIVQSYLQWLQDSDYN--PNCSLCI 57
Query: 59 AVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSG 118
L+ + +T RL C + H SCL P +TAP GY CP C ++PP+N+
Sbjct: 58 QPLDSQ---DTVRLVCYDLFHWSCLNELASHQPLNTAPDGYQCPTCQGPVFPPRNL---A 111
Query: 119 SRLHSLLKEAI 129
S + +L+E +
Sbjct: 112 SPVADMLREQL 122
>sp|Q16N38|ZFPL1_AEDAE Zinc finger protein-like 1 homolog OS=Aedes aegypti GN=AAEL012105
PE=3 SV=1
Length = 290
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 66/116 (56%), Gaps = 8/116 (6%)
Query: 1 MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQ 58
M +CKC R+ T +CF H+V VC C+ H C V++Y +W+ D ++D C C
Sbjct: 1 MGLCKCPKRQVTTQFCFEHRVNVCENCMVV-NHTKCTVQSYIQWLKDSDFD--SSCPLCG 57
Query: 59 AVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNV 114
+ L+ E + RL C HV H CL + +S P +TAP G+ CP CS I+PP N+
Sbjct: 58 SPLDNE---DCVRLICYHVFHWKCLNAKQQSLPANTAPGGHTCPTCSDPIFPPVNL 110
>sp|B3P7K6|ZFPL1_DROER Zinc finger protein-like 1 homolog OS=Drosophila erecta GN=GG12524
PE=3 SV=1
Length = 298
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 99/219 (45%), Gaps = 16/219 (7%)
Query: 1 MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQ 58
M +CKC R T +CF H+V VC C+ H C+V++Y +W+ D +Y C C
Sbjct: 1 MGLCKCPKRLVTNQFCFEHRVNVCEHCM-VQSHPKCIVQSYLQWLRDSDY--ISNCTLCG 57
Query: 59 AVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSG 118
LE+ + RL C HV H CL + + P +TAP G+ CP C+ I+P N+
Sbjct: 58 TTLEQ---GDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPACTVEIFPNANLV--- 111
Query: 119 SRLHSLLKEAIMLTGLEKNLFGNHPVSLAVAESRGPPPAFASDPIVN----VNASSSPSK 174
S + LK + +N G +S + P AS V+ V+ S +
Sbjct: 112 SPVADALKSFLSQVNWGRNGLGLALLSEEQNSLKAIKPKVASQSAVSNMTKVHHIHSGGE 171
Query: 175 DGINITEGYTAPSTVS-EIMEIDGPSPAGNFIKSSSPVV 212
G+ A S S +M+ P AG++ S P++
Sbjct: 172 RERTKPNGHDAVSPHSVLLMDAFNPPSAGDYASSRRPLL 210
>sp|Q9VD26|ZFPL1_DROME Zinc finger protein-like 1 homolog OS=Drosophila melanogaster
GN=CG5382 PE=1 SV=1
Length = 299
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 17/220 (7%)
Query: 1 MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQ 58
M +CKC R T +CF H+V VC C+ H C+V++Y +W+ D +Y C C
Sbjct: 1 MGLCKCPKRLVTNQFCFEHRVNVCEHCM-VQSHPKCIVQSYLQWLRDSDY--ISNCTLCG 57
Query: 59 AVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSG 118
LE+ + RL C HV H CL + + P +TAP G+ CP CS I+P N+
Sbjct: 58 TTLEQ---GDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPACSVEIFPNANLV--- 111
Query: 119 SRLHSLLKEAIMLTGLEKNLFGNHPVSLAVAES-RGPPPAFASDPIVN----VNASSSPS 173
S + LK + +N G +S + S + P AS V+ V+ S
Sbjct: 112 SPVADALKSFLSQVNWGRNGLGLALLSEEQSSSLKAIKPKVASQAAVSNMTKVHHIHSGG 171
Query: 174 KDGINITEGYTAPSTVS-EIMEIDGPSPAGNFIKSSSPVV 212
+ G+ A S S +M+ P AG++ S P++
Sbjct: 172 ERERTKPNGHDAVSPHSVLLMDAFNPPSAGDYASSRRPLL 211
>sp|Q298N4|ZFPL1_DROPS Zinc finger protein-like 1 homolog OS=Drosophila pseudoobscura
pseudoobscura GN=GA18838 PE=3 SV=1
Length = 302
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 1 MVVCKC--RKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQ 58
M +CKC R T +CF H+V VC C+ H C+V++Y +W+ D +Y C C
Sbjct: 1 MGLCKCPKRLVTNQFCFEHRVNVCEHCM-VQSHPKCIVQSYLQWLRDSDY--ISNCNLCG 57
Query: 59 AVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNV 114
LE+ E RL C HV H CL + + P +TAP G+ CP CS I+P N+
Sbjct: 58 TSLEQ---GECVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPGCSVEIFPNTNL 110
>sp|Q551M4|ZFPL1_DICDI Zinc finger protein-like 1 homolog OS=Dictyostelium discoideum
GN=zfpl1 PE=3 SV=1
Length = 354
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Query: 1 MVVCKCRKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQAV 60
M +CKC+K ++ +CF HK +C C+ +H IC +++Y W+ D E++ C C+
Sbjct: 1 MGICKCKKRSEDFCFNHKKFICDSCV-VADHSICYIKSYVSWLTDCEFE-DSVCGVCKGK 58
Query: 61 LEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKN 113
+ + ++ RL C H+ H C+ ++ + P +++ Y CP C I P +
Sbjct: 59 FDVDDNDDSVRLLCYHLYHPECIDVYVAALPQNSSVESYPCPKCPEPILPSND 111
>sp|B3M0F3|SLX1_DROAN Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila
ananassae GN=slx1 PE=3 SV=1
Length = 299
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 22/108 (20%)
Query: 50 WPPKCCQCQAVLEEESGSETTRLGCLH-----VIHTSCLVSHI-KSFPPHTAPAGYVCPL 103
W P+C C +++ E +RLGC + H CL +++ P H P G CPL
Sbjct: 193 WAPECHLCMQRIDQ---PERSRLGCTNPTCRLTCHMLCLANYLLGDEPGHYIPVGGECPL 249
Query: 104 CSTTI-WPPKNVKDSGSRLHSLLKEAIMLTGLEKNLFGNHPVSLAVAE 150
C T + W +LL+ +L G+ + L +++
Sbjct: 250 CETRLSWS------------ALLQRKRLLNGIPEELLDQEEADEDLSD 285
>sp|Q9VN41|SLX1_DROME Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila
melanogaster GN=slx1 PE=1 SV=3
Length = 297
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 56 QCQAVLEEESGSETTRLGCLHVI-----HTSCLVSHI-KSFPPHTAPAGYVCPLCSTTI 108
+C ++E E +RLGC + + H CL +++ P H P G CPLC T +
Sbjct: 195 ECHLCMQEMEQPEKSRLGCTNQMCRLTCHMVCLANYLLGDEPGHYIPVGGECPLCETRL 253
>sp|B3P230|SLX1_DROER Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila
erecta GN=slx1 PE=3 SV=2
Length = 294
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 22/96 (22%)
Query: 50 WPPKCCQCQAVLEEESGSETTRLGCLHVI-----HTSCLVSHI-KSFPPHTAPAGYVCPL 103
W +C C +E+ E +RLGC + + H CL +++ P H P G CPL
Sbjct: 193 WASECHLCMQQIEQ---PERSRLGCTNQMCRLTCHMMCLANYLLGDEPGHYIPVGGQCPL 249
Query: 104 CSTTI-WPPKNVKDSGSRLHSLLKEAIMLTGLEKNL 138
C + W +LL+ +L G+ K L
Sbjct: 250 CENRLSWA------------ALLQRKRLLLGVPKEL 273
>sp|Q5UQ35|YR811_MIMIV Putative ariadne-like RING finger protein R811 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R811 PE=4 SV=1
Length = 990
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 20 PVCGECICFP-----EHQIC-VVRTYSEWVIDGEYDWPPKCCQCQAVLEEESGSETTRLG 73
P C +C F Q+C +VRT + + ID Y W KC Q + V+E+E + +LG
Sbjct: 852 PFCKQCPMFNILAAFNRQVCAMVRTNNSFDIDWWYGWCLKCFQPKKVVEKECSEDAPQLG 911
>sp|Q9EPZ8|RN103_RAT E3 ubiquitin-protein ligase RNF103 OS=Rattus norvegicus GN=Rnf103
PE=2 SV=1
Length = 682
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 50 WPP---KCCQCQAVLEE-ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCS 105
WP C +C LE E+G L C HV H +C+V + A + CP+C
Sbjct: 608 WPAGTLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWL-------AGGRHCCPVCR 660
Query: 106 TTIWPPKNVKDSGSRLHSLLKEA 128
WP K ++ L +A
Sbjct: 661 ---WPSYKKKQPYAQQQPLSNDA 680
>sp|Q4R5T4|RNF32_MACFA RING finger protein 32 OS=Macaca fascicularis GN=RNF32 PE=2 SV=1
Length = 362
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 58 QAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106
Q V + ET L C HV H +CL++ ++ F P + CPLC +
Sbjct: 306 QRVGAGQRSRETALLSCSHVFHHACLLA-LEEFSVGDRPPFHACPLCRS 353
>sp|Q9R1W3|RN103_MOUSE E3 ubiquitin-protein ligase RNF103 OS=Mus musculus GN=Rnf103 PE=2
SV=2
Length = 683
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 50 WPP---KCCQCQAVLEE-ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCS 105
WP C +C LE E+G L C HV H +C+V + A + CP+C
Sbjct: 609 WPAGTLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWL-------AGGRHCCPVCR 661
Query: 106 TTIWP 110
WP
Sbjct: 662 ---WP 663
>sp|O00237|RN103_HUMAN E3 ubiquitin-protein ligase RNF103 OS=Homo sapiens GN=RNF103 PE=1
SV=1
Length = 685
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 50 WPPK---CCQCQAVLEE-ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCS 105
WP C +C LE E+G L C HV H +C+V + A + CP+C
Sbjct: 611 WPADMLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWL-------AGGRHCCPVCR 663
Query: 106 TTIWP 110
WP
Sbjct: 664 ---WP 665
>sp|O95625|ZBT11_HUMAN Zinc finger and BTB domain-containing protein 11 OS=Homo sapiens
GN=ZBTB11 PE=1 SV=2
Length = 1053
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 83 LVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSGSRLH------SLLKEAIMLTGLEK 136
L H+++ HT YVCP+CS + ++ ++ H ++ E L +
Sbjct: 901 LKRHVRT---HTGERPYVCPVCSEAYIDARTLRKHMTKFHRDYVPCKIMLEKDTLQFHNQ 957
Query: 137 NLFGNHPVSLAVA-----ESRGPPPAFASDPIVNVNASSSPSKDGINITEGYTAPSTVSE 191
H VS+ A ES GP V V + + + + TE Y + ST+S+
Sbjct: 958 GTQVAHAVSILTAGMQEQESSGPQEL----ETVVVTGETMEALEAVAATEEYPSVSTLSD 1013
Query: 192 --IMEI 195
IM++
Sbjct: 1014 QSIMQV 1019
>sp|Q9ZT50|RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A
PE=1 SV=1
Length = 155
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 54 CCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108
C C + L+E G E +L C HV H CL + F + CPLC + +
Sbjct: 86 CVVCLSKLKE--GEEVRKLECRHVFHKKCLEGWLHQF-------NFTCPLCRSAL 131
>sp|A2QUJ2|SLX1_ASPNC Structure-specific endonuclease subunit slx1 OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=slx1 PE=3 SV=1
Length = 424
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 40 SEWVIDGEYDWPPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSF---PPHTAP 96
S +++D D K CQ + L EE R C + H CL S P P
Sbjct: 225 SHFLLDDPSDLRCKICQAKIALSEELALVCPRASCYCISHLLCLSSRFLDHAEEPEQLVP 284
Query: 97 AGYVCPLCSTTI 108
+CPLC+ I
Sbjct: 285 IDGICPLCNKVI 296
>sp|B4I3R2|SLX1_DROSE Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila
sechellia GN=slx1 PE=3 SV=2
Length = 298
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 50 WPPKCCQCQAVLEEESGSETTRLGCLHVI-----HTSCLVSHI-KSFPPHTAPAGYVCPL 103
W +C C +E+ E +RLGC + + H CL +++ H P G CPL
Sbjct: 192 WASECHLCMQQIEQ---PEKSRLGCTNQMCRLTCHMVCLANYLLGDETGHYIPVGGECPL 248
Query: 104 CSTTI 108
C T +
Sbjct: 249 CETRL 253
>sp|O74349|LTN1_SCHPO E3 ubiquitin-protein ligase listerin OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC21D10.09c PE=3 SV=1
Length = 1610
Score = 31.6 bits (70), Expect = 4.3, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 53 KCCQCQAVLEEESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTT 107
+C C +VL E R G C H H SCL KS CPLC ++
Sbjct: 1557 ECAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKS------SNSSRCPLCRSS 1606
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 25/105 (23%)
Query: 35 VVRTYSEWVIDGEYDWPPKCCQCQAV------LEEES-GSETTRLGCLHVIHTSCLVSHI 87
R Y +WP C + LEE S G E + CLH H +C+ +
Sbjct: 244 ATRRYQASCRQARGEWPDSGSSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWL 303
Query: 88 KSFPPHTAPAGYVCPLC----------STTIWPPKNVKDSGSRLH 122
CPLC S ++ P ++ ++ G RLH
Sbjct: 304 HQH--------RTCPLCMFNITEGDSFSQSLGPSRSYQEPGRRLH 340
>sp|Q80ST9|LCA5_MOUSE Lebercilin OS=Mus musculus GN=Lca5 PE=2 SV=1
Length = 704
Score = 31.2 bits (69), Expect = 6.2, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 134 LEKNLFGNHPVSLAVAESRGPPPAFASDPI-VNVNASSSPSKDGINITEGYTAPSTVSEI 192
L++ FG++ S + PP+ S + N+S SPSKD +++ +T+ E
Sbjct: 553 LDEFSFGSYVPSFGKTLGKSNPPSQKSSLLDFQSNSSESPSKDSLDLMSRKEKKATLME- 611
Query: 193 MEIDGPSPAGNFIKSSS 209
++ GPS + + S S
Sbjct: 612 -QLFGPSASNTSVSSKS 627
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 19/85 (22%)
Query: 28 FPEHQICVVRTYSEWVIDGEYDWPPKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVS 85
FP Q V+T + +C L E ET RL C HV H C+ +
Sbjct: 124 FPTFQYSTVKTLR---------IGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDA 174
Query: 86 HIKSFPPHTAPAGYVCPLCSTTIWP 110
++S HT CPLC + P
Sbjct: 175 WLRS---HT-----TCPLCRADLIP 191
>sp|B4GEU1|SLX1_DROPE Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila
persimilis GN=slx1 PE=3 SV=1
Length = 291
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 50 WPPKCCQCQAVLEEESGSETTRLGCLH-----VIHTSCLVSHI-KSFPPHTAPAGYVCPL 103
W +C C +E+ E +RLGC + H CL S++ P P G CPL
Sbjct: 185 WAHECHLCMQSIEQ---PERSRLGCTNPTCRLTCHMLCLASYLLGDEPGQYIPIGGECPL 241
Query: 104 CSTTI 108
C T +
Sbjct: 242 CETRL 246
>sp|Q9JIT1|RNF32_MOUSE RING finger protein 32 OS=Mus musculus GN=Rnf32 PE=2 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 68 ETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106
ET L C H+ H +CL++ ++ F +VCPLC +
Sbjct: 322 ETVLLSCAHLFHNACLLA-LEEFSLGDNAPFHVCPLCRS 359
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 32 QICVVRTYSEWVIDGEYDWPPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFP 91
Q+ + R +S D C C + L+ +G E +L C HV H CL ++
Sbjct: 55 QLNLNRLFSYRYSDNA---ASDCIVCLSKLK--TGEEVRKLDCRHVFHKQCLEGWLQHL- 108
Query: 92 PHTAPAGYVCPLCSTTIWP 110
+ CPLC + + P
Sbjct: 109 ------NFNCPLCRSPLLP 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,905,776
Number of Sequences: 539616
Number of extensions: 3630283
Number of successful extensions: 8388
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 8326
Number of HSP's gapped (non-prelim): 81
length of query: 215
length of database: 191,569,459
effective HSP length: 113
effective length of query: 102
effective length of database: 130,592,851
effective search space: 13320470802
effective search space used: 13320470802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)