Query 028040
Match_columns 215
No_of_seqs 217 out of 697
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:11:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ep4_A Ring finger protein 24; 99.5 7.6E-14 2.6E-18 98.2 5.6 54 52-115 16-69 (74)
2 1x4j_A Ring finger protein 38; 99.4 8.4E-14 2.9E-18 98.6 3.9 51 51-111 23-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.4 1.9E-13 6.5E-18 90.9 4.3 48 52-109 6-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.4 3.8E-13 1.3E-17 93.4 5.2 50 52-111 15-64 (69)
5 2l0b_A E3 ubiquitin-protein li 99.4 2.3E-13 7.9E-18 100.5 4.3 51 51-111 40-90 (91)
6 1v87_A Deltex protein 2; ring- 99.4 3.2E-13 1.1E-17 102.1 4.2 71 34-110 11-94 (114)
7 2ecm_A Ring finger and CHY zin 99.4 4.8E-13 1.6E-17 88.8 4.4 49 52-109 6-54 (55)
8 2ecl_A Ring-box protein 2; RNF 99.4 3.5E-13 1.2E-17 97.9 3.8 50 52-110 16-76 (81)
9 2ect_A Ring finger protein 126 99.3 1E-12 3.4E-17 93.3 4.6 52 51-112 15-66 (78)
10 2d8s_A Cellular modulator of i 99.3 3.7E-12 1.3E-16 93.8 5.0 56 52-116 16-76 (80)
11 2ea6_A Ring finger protein 4; 99.2 1.1E-11 3.7E-16 85.1 5.2 52 51-110 15-68 (69)
12 3ng2_A RNF4, snurf, ring finge 99.2 9.6E-12 3.3E-16 86.1 4.2 52 52-111 11-64 (71)
13 2ct2_A Tripartite motif protei 99.2 2.5E-11 8.7E-16 87.0 6.3 55 51-111 15-69 (88)
14 2xeu_A Ring finger protein 4; 99.2 1.8E-11 6.1E-16 82.8 4.4 52 52-111 4-57 (64)
15 3dpl_R Ring-box protein 1; ubi 99.1 5E-11 1.7E-15 91.9 6.0 49 52-108 38-99 (106)
16 1chc_A Equine herpes virus-1 r 99.1 2.7E-11 9.4E-16 83.5 3.8 47 52-110 6-52 (68)
17 2ysl_A Tripartite motif-contai 99.1 8.1E-11 2.8E-15 82.0 5.5 51 51-111 20-70 (73)
18 2csy_A Zinc finger protein 183 99.1 4.4E-11 1.5E-15 85.6 3.7 46 51-109 15-60 (81)
19 3lrq_A E3 ubiquitin-protein li 99.1 6.1E-11 2.1E-15 88.8 4.6 65 52-131 23-88 (100)
20 2d8t_A Dactylidin, ring finger 99.1 3.5E-11 1.2E-15 84.4 2.9 46 52-110 16-61 (71)
21 2ecy_A TNF receptor-associated 99.1 9.6E-11 3.3E-15 80.9 4.9 48 52-111 16-63 (66)
22 2djb_A Polycomb group ring fin 99.1 1.3E-10 4.5E-15 81.6 5.5 48 52-112 16-64 (72)
23 2yur_A Retinoblastoma-binding 99.1 1.4E-10 4.7E-15 82.2 5.3 52 51-113 15-67 (74)
24 2ecn_A Ring finger protein 141 99.0 4E-11 1.4E-15 83.3 1.6 47 52-112 16-62 (70)
25 1g25_A CDK-activating kinase a 99.0 1.9E-10 6.5E-15 79.1 5.0 52 52-111 4-56 (65)
26 3fl2_A E3 ubiquitin-protein li 99.0 2.9E-10 9.9E-15 87.5 6.5 50 52-113 53-102 (124)
27 3ztg_A E3 ubiquitin-protein li 99.0 3.6E-10 1.2E-14 82.2 6.7 52 51-113 13-65 (92)
28 1t1h_A Gspef-atpub14, armadill 99.0 3.3E-10 1.1E-14 80.1 6.3 48 52-111 9-56 (78)
29 1jm7_A BRCA1, breast cancer ty 99.0 4.8E-10 1.6E-14 83.8 6.6 68 52-129 22-90 (112)
30 2ecw_A Tripartite motif-contai 99.0 6E-10 2.1E-14 78.7 6.3 54 51-111 19-72 (85)
31 4a0k_B E3 ubiquitin-protein li 99.0 5.7E-11 2E-15 93.5 0.9 49 52-108 49-110 (117)
32 4ap4_A E3 ubiquitin ligase RNF 99.0 3.1E-10 1.1E-14 86.0 4.3 52 52-111 8-61 (133)
33 2ysj_A Tripartite motif-contai 99.0 5.6E-10 1.9E-14 76.2 5.2 44 51-104 20-63 (63)
34 4ayc_A E3 ubiquitin-protein li 99.0 2.8E-10 9.5E-15 89.5 3.7 46 52-110 54-99 (138)
35 2ecj_A Tripartite motif-contai 98.9 7.3E-10 2.5E-14 73.8 4.5 44 51-104 15-58 (58)
36 2ecv_A Tripartite motif-contai 98.9 1E-09 3.4E-14 77.6 5.3 54 51-111 19-72 (85)
37 2y43_A E3 ubiquitin-protein li 98.9 9.1E-10 3.1E-14 81.4 5.2 47 52-111 23-70 (99)
38 2egp_A Tripartite motif-contai 98.9 4.3E-10 1.5E-14 79.2 3.2 54 52-111 13-66 (79)
39 4ap4_A E3 ubiquitin ligase RNF 98.9 6.5E-10 2.2E-14 84.2 3.9 51 52-110 73-125 (133)
40 1z6u_A NP95-like ring finger p 98.9 2.3E-09 7.9E-14 86.3 6.4 50 52-113 79-128 (150)
41 2ckl_B Ubiquitin ligase protei 98.9 1.4E-09 4.9E-14 87.3 5.1 50 52-113 55-105 (165)
42 3l11_A E3 ubiquitin-protein li 98.9 1.3E-09 4.4E-14 82.6 3.8 47 52-110 16-62 (115)
43 1rmd_A RAG1; V(D)J recombinati 98.8 1.9E-09 6.5E-14 81.8 4.4 48 52-111 24-71 (116)
44 2ckl_A Polycomb group ring fin 98.8 2.7E-09 9.1E-14 80.2 4.0 47 52-111 16-63 (108)
45 2ct0_A Non-SMC element 1 homol 98.8 2.3E-09 7.9E-14 78.4 3.4 47 52-108 16-62 (74)
46 3hct_A TNF receptor-associated 98.8 3.2E-09 1.1E-13 81.2 3.5 48 52-111 19-66 (118)
47 1e4u_A Transcriptional repress 98.7 1E-08 3.6E-13 74.7 4.8 51 51-111 11-63 (78)
48 1jm7_B BARD1, BRCA1-associated 98.6 2E-08 6.7E-13 76.7 3.9 45 52-111 23-68 (117)
49 1bor_A Transcription factor PM 98.6 1E-08 3.5E-13 69.4 0.6 45 52-112 7-51 (56)
50 3knv_A TNF receptor-associated 98.5 1.5E-08 5E-13 80.9 0.8 48 52-111 32-79 (141)
51 2c2l_A CHIP, carboxy terminus 98.5 5.1E-08 1.7E-12 82.0 3.9 70 52-135 209-278 (281)
52 1wgm_A Ubiquitin conjugation f 98.5 1E-07 3.4E-12 72.0 5.1 70 52-136 23-93 (98)
53 2y1n_A E3 ubiquitin-protein li 98.4 9.7E-08 3.3E-12 88.6 4.2 48 52-111 333-380 (389)
54 3hcs_A TNF receptor-associated 98.4 1.1E-07 3.9E-12 76.3 3.6 48 52-111 19-66 (170)
55 4ic3_A E3 ubiquitin-protein li 98.4 1E-07 3.5E-12 67.8 2.9 41 52-109 25-66 (74)
56 1vyx_A ORF K3, K3RING; zinc-bi 98.4 2.3E-07 7.8E-12 64.7 3.6 46 52-108 7-57 (60)
57 2kr4_A Ubiquitin conjugation f 98.4 3.9E-07 1.3E-11 66.7 4.8 47 52-111 15-61 (85)
58 2yu4_A E3 SUMO-protein ligase 98.3 3.7E-07 1.2E-11 67.8 4.5 49 52-107 8-59 (94)
59 2kre_A Ubiquitin conjugation f 98.3 5.8E-07 2E-11 68.0 5.0 47 52-111 30-76 (100)
60 3k1l_B Fancl; UBC, ring, RWD, 98.3 1.2E-07 4.3E-12 87.5 0.9 57 52-109 309-372 (381)
61 2vje_A E3 ubiquitin-protein li 98.3 5.2E-07 1.8E-11 62.7 3.4 45 52-109 9-56 (64)
62 1wim_A KIAA0161 protein; ring 98.2 7.3E-08 2.5E-12 70.9 -1.4 53 52-107 6-61 (94)
63 2ecg_A Baculoviral IAP repeat- 98.2 5.2E-07 1.8E-11 64.0 2.6 42 52-110 26-68 (75)
64 2f42_A STIP1 homology and U-bo 98.2 1.1E-06 3.6E-11 73.7 4.9 70 52-135 107-176 (179)
65 2vje_B MDM4 protein; proto-onc 98.2 7.6E-07 2.6E-11 61.7 2.9 47 52-109 8-55 (63)
66 2ea5_A Cell growth regulator w 97.9 3.9E-06 1.3E-10 59.2 2.5 42 52-110 16-58 (68)
67 2yho_A E3 ubiquitin-protein li 97.8 5.9E-06 2E-10 59.7 2.1 42 52-110 19-61 (79)
68 3t6p_A Baculoviral IAP repeat- 97.6 1.1E-05 3.8E-10 73.3 1.4 41 52-109 296-337 (345)
69 3htk_C E3 SUMO-protein ligase 97.4 5.8E-05 2E-09 67.1 3.1 49 51-110 181-232 (267)
70 2bay_A PRE-mRNA splicing facto 97.3 0.00011 3.7E-09 51.0 2.5 46 52-110 4-50 (61)
71 3nw0_A Non-structural maintena 97.3 0.00012 4.1E-09 63.2 3.3 51 51-112 180-230 (238)
72 3vk6_A E3 ubiquitin-protein li 96.8 0.0013 4.4E-08 51.0 4.3 46 53-110 3-49 (101)
73 2lri_C Autoimmune regulator; Z 94.8 0.027 9.3E-07 39.8 3.8 50 52-111 13-63 (66)
74 1f62_A Transcription factor WS 90.6 0.16 5.5E-06 33.2 2.6 47 53-106 2-49 (51)
75 2l5u_A Chromodomain-helicase-D 88.1 0.23 7.8E-06 34.1 2.0 46 51-106 11-57 (61)
76 1mm2_A MI2-beta; PHD, zinc fin 84.8 0.24 8.3E-06 33.9 0.7 48 51-108 9-57 (61)
77 2yql_A PHD finger protein 21A; 84.3 0.097 3.3E-06 35.2 -1.5 46 51-106 9-55 (56)
78 3o36_A Transcription intermedi 82.6 0.97 3.3E-05 36.6 3.5 49 52-110 5-54 (184)
79 4bbq_A Lysine-specific demethy 81.2 0.11 3.9E-06 39.1 -2.4 34 73-106 80-113 (117)
80 2ysm_A Myeloid/lymphoid or mix 79.6 0.26 8.9E-06 37.0 -0.9 80 21-111 24-108 (111)
81 2ysm_A Myeloid/lymphoid or mix 79.4 0.71 2.4E-05 34.5 1.5 49 51-106 7-56 (111)
82 3u5n_A E3 ubiquitin-protein li 78.8 0.45 1.6E-05 39.4 0.3 49 52-110 8-57 (207)
83 2lv9_A Histone-lysine N-methyl 76.2 1.6 5.3E-05 32.5 2.6 60 38-106 14-75 (98)
84 1wil_A KIAA1045 protein; ring 75.3 2.5 8.6E-05 31.8 3.5 50 51-105 15-74 (89)
85 3v43_A Histone acetyltransfera 75.1 0.79 2.7E-05 34.7 0.7 48 53-106 63-111 (112)
86 1fp0_A KAP-1 corepressor; PHD 74.9 0.87 3E-05 34.0 0.9 46 52-107 26-72 (88)
87 2lbm_A Transcriptional regulat 74.7 2.2 7.4E-05 34.4 3.2 45 52-106 64-116 (142)
88 2k16_A Transcription initiatio 74.6 1.3 4.4E-05 31.0 1.7 51 51-108 18-69 (75)
89 1we9_A PHD finger family prote 72.0 1.3 4.5E-05 30.0 1.2 50 52-106 7-57 (64)
90 2puy_A PHD finger protein 21A; 71.7 0.57 1.9E-05 31.7 -0.8 47 52-108 6-53 (60)
91 2kwj_A Zinc finger protein DPF 71.3 1.2 4.1E-05 33.8 0.9 35 52-86 2-41 (114)
92 3asl_A E3 ubiquitin-protein li 70.5 1.2 4.1E-05 31.4 0.7 48 53-106 20-68 (70)
93 1weu_A Inhibitor of growth fam 70.4 2.8 9.6E-05 31.3 2.8 47 52-109 37-87 (91)
94 2kw0_A CCMH protein; oxidoredu 69.9 4.2 0.00014 30.6 3.6 29 98-131 23-51 (90)
95 2e6s_A E3 ubiquitin-protein li 69.6 1.3 4.6E-05 31.8 0.8 49 52-106 27-76 (77)
96 2jun_A Midline-1; B-BOX, TRIM, 69.1 2 7E-05 30.9 1.7 33 52-87 4-38 (101)
97 3v43_A Histone acetyltransfera 68.4 4.9 0.00017 30.2 3.8 50 52-105 6-62 (112)
98 1x63_A Skeletal muscle LIM-pro 68.1 4.9 0.00017 27.5 3.5 41 52-111 16-56 (82)
99 2ro1_A Transcription intermedi 67.7 1.4 4.8E-05 36.3 0.6 49 52-109 3-51 (189)
100 1xwh_A Autoimmune regulator; P 67.6 0.72 2.5E-05 31.9 -1.0 46 52-107 9-55 (66)
101 1wen_A Inhibitor of growth fam 66.2 3.2 0.00011 29.3 2.2 46 51-107 16-65 (71)
102 1wew_A DNA-binding family prot 65.5 3.7 0.00012 29.1 2.4 56 50-111 15-76 (78)
103 2yt5_A Metal-response element- 65.5 2.3 8E-05 28.8 1.3 50 52-106 7-60 (66)
104 3ql9_A Transcriptional regulat 65.2 7.7 0.00026 30.7 4.5 54 43-106 50-110 (129)
105 3shb_A E3 ubiquitin-protein li 64.4 1 3.5E-05 32.5 -0.7 47 53-106 28-76 (77)
106 3lqh_A Histone-lysine N-methyl 64.4 1.1 3.6E-05 37.4 -0.7 54 52-108 3-64 (183)
107 1fre_A Nuclear factor XNF7; zi 63.7 3.7 0.00013 25.2 1.9 27 7-33 10-36 (42)
108 2cs3_A Protein C14ORF4, MY039 62.0 6.3 0.00022 29.6 3.2 40 51-93 15-56 (93)
109 2ri7_A Nucleosome-remodeling f 61.1 1.2 4.1E-05 35.5 -0.9 50 52-107 9-59 (174)
110 1iml_A CRIP, cysteine rich int 61.0 2.8 9.6E-05 28.5 1.1 26 53-82 2-27 (76)
111 1wep_A PHF8; structural genomi 60.6 5.8 0.0002 28.0 2.7 53 52-110 13-66 (79)
112 2rsd_A E3 SUMO-protein ligase 59.8 0.58 2E-05 32.5 -2.7 50 52-105 11-63 (68)
113 2egq_A FHL1 protein; LIM domai 58.9 8 0.00027 26.1 3.1 40 52-110 16-58 (77)
114 2hl7_A Cytochrome C-type bioge 57.8 7.1 0.00024 28.8 2.8 29 98-131 26-54 (84)
115 1wyh_A SLIM 2, skeletal muscle 57.4 8 0.00027 25.7 2.9 40 52-110 6-45 (72)
116 3mjh_B Early endosome antigen 56.7 1.8 6.2E-05 27.1 -0.5 13 97-109 4-16 (34)
117 1wee_A PHD finger family prote 56.0 0.82 2.8E-05 32.0 -2.4 54 50-110 15-69 (72)
118 3o70_A PHD finger protein 13; 54.5 3.4 0.00012 28.9 0.6 46 52-106 20-66 (68)
119 2ehe_A Four and A half LIM dom 54.4 12 0.0004 25.6 3.4 39 52-109 16-54 (82)
120 2e6r_A Jumonji/ARID domain-con 53.4 1.6 5.3E-05 32.3 -1.4 48 52-106 17-65 (92)
121 1wev_A Riken cDNA 1110020M19; 53.0 1.5 5.3E-05 32.0 -1.5 50 52-107 17-72 (88)
122 4gne_A Histone-lysine N-methyl 52.7 6.4 0.00022 30.1 1.9 44 50-105 14-60 (107)
123 2l43_A N-teminal domain from h 51.8 14 0.00047 26.9 3.5 52 50-108 24-76 (88)
124 1x6a_A LIMK-2, LIM domain kina 51.3 12 0.0004 25.6 3.0 38 52-110 16-53 (81)
125 2g6q_A Inhibitor of growth pro 50.4 2.1 7.1E-05 29.5 -1.1 44 52-106 12-59 (62)
126 2cu8_A Cysteine-rich protein 2 48.4 8 0.00027 26.2 1.7 39 52-110 10-48 (76)
127 3ask_A E3 ubiquitin-protein li 48.1 3.8 0.00013 35.3 -0.0 49 52-106 175-224 (226)
128 2vnf_A ING 4, P29ING4, inhibit 47.8 2.3 7.9E-05 28.9 -1.2 44 52-106 11-58 (60)
129 2did_A Tripartite motif protei 47.8 4.5 0.00015 26.1 0.3 29 7-35 15-43 (53)
130 2ku3_A Bromodomain-containing 47.0 18 0.00063 25.3 3.5 48 51-106 16-65 (71)
131 2dj7_A Actin-binding LIM prote 46.6 9.9 0.00034 26.4 2.0 39 51-109 15-53 (80)
132 1g47_A Pinch protein; LIM doma 45.7 12 0.00041 25.1 2.3 46 45-111 7-52 (77)
133 1zfo_A LAsp-1; LIM domain, zin 45.6 6.3 0.00022 23.4 0.7 28 52-83 4-31 (31)
134 2l3k_A Rhombotin-2, linker, LI 45.6 10 0.00036 28.2 2.1 40 53-111 10-49 (123)
135 2kwj_A Zinc finger protein DPF 45.3 1.7 5.7E-05 33.0 -2.4 47 53-106 60-107 (114)
136 2vpb_A Hpygo1, pygopus homolog 45.1 11 0.00036 26.2 1.9 48 52-105 9-64 (65)
137 1x61_A Thyroid receptor intera 43.7 18 0.0006 24.0 2.9 39 52-109 6-44 (72)
138 1x4l_A Skeletal muscle LIM-pro 43.1 19 0.00065 23.9 3.0 40 52-109 6-46 (72)
139 2d8u_A Ubiquitin ligase TRIM63 42.4 8.1 0.00028 25.5 1.0 29 8-36 17-45 (64)
140 3ddt_A E3 ubiquitin-protein li 42.2 4.7 0.00016 25.5 -0.3 28 8-35 15-42 (48)
141 3i2d_A E3 SUMO-protein ligase 42.2 19 0.00065 33.1 3.7 50 52-112 250-302 (371)
142 1z2q_A LM5-1; membrane protein 41.2 14 0.00049 26.3 2.2 43 38-87 11-56 (84)
143 2cuq_A Four and A half LIM dom 40.8 27 0.00092 23.5 3.5 37 52-109 16-52 (80)
144 2kgg_A Histone demethylase jar 39.8 3.3 0.00011 27.2 -1.3 47 53-105 4-52 (52)
145 2co8_A NEDD9 interacting prote 39.7 19 0.00064 25.0 2.6 40 51-110 15-54 (82)
146 2jvx_A NF-kappa-B essential mo 38.2 7.9 0.00027 23.2 0.3 12 97-108 2-13 (28)
147 4fo9_A E3 SUMO-protein ligase 37.6 27 0.00092 32.0 3.9 50 52-112 216-268 (360)
148 1x68_A FHL5 protein; four-and- 37.4 19 0.00065 24.3 2.3 40 52-109 6-46 (76)
149 2yw8_A RUN and FYVE domain-con 37.2 17 0.00058 25.8 2.1 41 40-87 11-54 (82)
150 2yrg_A Tripartite motif-contai 37.0 7.1 0.00024 26.0 -0.0 29 7-35 21-49 (59)
151 2dar_A PDZ and LIM domain prot 36.9 28 0.00097 24.2 3.2 38 52-110 26-63 (90)
152 1x4u_A Zinc finger, FYVE domai 35.1 19 0.00063 25.7 2.0 39 40-86 6-48 (84)
153 3t7l_A Zinc finger FYVE domain 35.0 16 0.00055 26.5 1.7 44 40-87 12-55 (90)
154 2cup_A Skeletal muscle LIM-pro 33.7 14 0.00049 26.0 1.2 29 52-83 67-95 (101)
155 3kqi_A GRC5, PHD finger protei 32.7 18 0.00061 25.2 1.5 52 52-110 10-64 (75)
156 2ko5_A Ring finger protein Z; 32.4 28 0.00097 26.6 2.6 52 43-109 20-72 (99)
157 2d8z_A Four and A half LIM dom 32.3 22 0.00077 23.3 1.9 37 52-109 6-42 (70)
158 3o7a_A PHD finger protein 13 v 31.8 6.8 0.00023 25.6 -0.8 47 52-106 4-51 (52)
159 2cor_A Pinch protein; LIM doma 31.4 32 0.0011 23.5 2.7 38 52-110 16-53 (79)
160 1x3h_A Leupaxin; paxillin fami 31.3 39 0.0013 22.7 3.1 39 52-111 16-54 (80)
161 2jtn_A LIM domain-binding prot 30.7 13 0.00045 29.4 0.6 40 52-110 120-159 (182)
162 3c6w_A P28ING5, inhibitor of g 30.2 4.5 0.00015 27.5 -2.0 44 52-106 10-57 (59)
163 1wd2_A Ariadne-1 protein homol 29.9 9.8 0.00033 26.0 -0.3 36 52-89 7-47 (60)
164 2cur_A Skeletal muscle LIM-pro 29.8 31 0.001 22.6 2.2 37 52-109 6-42 (69)
165 2xqn_T Testin, TESS; metal-bin 28.9 42 0.0014 24.6 3.1 47 52-112 31-77 (126)
166 1x62_A C-terminal LIM domain p 28.5 31 0.0011 23.4 2.2 37 52-109 16-52 (79)
167 1joc_A EEA1, early endosomal a 27.3 25 0.00087 27.0 1.7 40 40-86 61-103 (125)
168 2d8x_A Protein pinch; LIM doma 27.2 40 0.0014 22.1 2.5 39 52-111 6-44 (70)
169 1weo_A Cellulose synthase, cat 26.6 1.2E+02 0.0039 22.9 5.1 51 52-109 17-69 (93)
170 2xb1_A Pygopus homolog 2, B-ce 25.9 23 0.00079 26.4 1.2 54 52-111 4-65 (105)
171 2epr_A POZ-, at HOOK-, and zin 25.8 45 0.0015 19.6 2.3 36 52-106 13-48 (48)
172 1v6g_A Actin binding LIM prote 25.1 41 0.0014 22.8 2.3 38 52-110 16-53 (81)
173 6rxn_A Rubredoxin; electron tr 24.7 31 0.001 22.6 1.4 13 95-107 27-39 (46)
174 2eop_A Zinc finger protein 268 24.4 72 0.0025 18.1 3.0 35 51-104 12-46 (46)
175 1wig_A KIAA1808 protein; LIM d 24.1 55 0.0019 21.9 2.8 38 52-110 6-43 (73)
176 2epz_A Zinc finger protein 28 23.8 78 0.0027 18.0 3.1 35 51-104 12-46 (46)
177 2csv_A Tripartite motif protei 23.8 22 0.00075 24.1 0.6 29 7-36 25-53 (72)
178 1nyp_A Pinch protein; LIM doma 23.7 44 0.0015 21.6 2.1 38 52-110 6-43 (66)
179 1x4k_A Skeletal muscle LIM-pro 23.7 19 0.00064 23.8 0.3 40 52-110 6-45 (72)
180 3m62_A Ubiquitin conjugation f 23.7 77 0.0026 32.6 4.8 46 52-110 892-938 (968)
181 2ytr_A Zinc finger protein 347 23.2 80 0.0027 17.9 3.1 34 52-104 13-46 (46)
182 2el4_A Zinc finger protein 268 23.0 53 0.0018 18.7 2.2 34 52-104 13-46 (46)
183 2rgt_A Fusion of LIM/homeobox 22.8 39 0.0013 26.3 2.0 41 52-111 66-106 (169)
184 2xjy_A Rhombotin-2; oncoprotei 22.6 66 0.0023 23.5 3.2 49 53-111 31-79 (131)
185 2ytn_A Zinc finger protein 347 22.6 75 0.0026 18.1 2.9 34 52-104 13-46 (46)
186 2jmi_A Protein YNG1, ING1 homo 22.2 18 0.00061 26.8 -0.1 44 51-105 26-74 (90)
187 4rxn_A Rubredoxin; electron tr 22.0 36 0.0012 23.0 1.4 12 96-107 34-45 (54)
188 2rpc_A Zinc finger protein ZIC 21.8 1.8E+02 0.0061 20.9 5.5 21 41-63 17-37 (155)
189 2egm_A Tripartite motif-contai 21.8 6.8 0.00023 26.0 -2.3 25 7-31 25-49 (57)
190 2dja_A Midline-2; tripartite m 21.3 16 0.00056 25.3 -0.5 29 8-36 27-55 (84)
191 2em5_A ZFP-95, zinc finger pro 21.0 70 0.0024 18.3 2.5 34 52-104 13-46 (46)
192 1x64_A Alpha-actinin-2 associa 20.7 57 0.0019 22.5 2.3 39 52-111 26-64 (89)
193 2ku7_A MLL1 PHD3-CYP33 RRM chi 20.7 54 0.0019 23.6 2.3 35 73-110 7-47 (140)
194 2pv0_B DNA (cytosine-5)-methyl 20.7 40 0.0014 31.1 1.9 58 42-106 85-147 (386)
195 1e8j_A Rubredoxin; iron-sulfur 20.6 44 0.0015 22.2 1.6 13 95-107 33-45 (52)
196 2ytq_A Zinc finger protein 268 20.4 97 0.0033 17.7 3.1 34 52-104 13-46 (46)
No 1
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=7.6e-14 Score=98.19 Aligned_cols=54 Identities=24% Similarity=0.582 Sum_probs=46.2
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVK 115 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~~i~ 115 (215)
..|+||++.|..++ .++.|+|+|+||..||.+|++... +||+||++|.....+.
T Consensus 16 ~~C~IC~~~~~~~~--~~~~~~C~H~f~~~Ci~~~~~~~~--------~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 16 ELCAVCLEDFKPRD--ELGICPCKHAFHRKCLIKWLEVRK--------VCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CBCSSSCCBCCSSS--CEEEETTTEEEEHHHHHHHHHHCS--------BCTTTCCBCSSCCSCC
T ss_pred CCCcCCCcccCCCC--cEEEcCCCCEecHHHHHHHHHcCC--------cCCCcCcccccccccC
Confidence 78999999998875 677889999999999999998742 5999999998765543
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=8.4e-14 Score=98.59 Aligned_cols=51 Identities=25% Similarity=0.567 Sum_probs=44.2
Q ss_pred CCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
...|+||++.|..++ .++.|+|+|+||..||++|++.. .+||+||+++.+.
T Consensus 23 ~~~C~IC~~~~~~~~--~~~~l~C~H~fh~~Ci~~w~~~~--------~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQ--LLRVLPCNHEFHAKCVDKWLKAN--------RTCPICRADSGPS 73 (75)
T ss_dssp CCEETTTTEECCBTC--EEEEETTTEEEETTHHHHHHHHC--------SSCTTTCCCCCCC
T ss_pred CCCCeECCcccCCCC--eEEEECCCCHhHHHHHHHHHHcC--------CcCcCcCCcCCCC
Confidence 378999999998875 67779999999999999999874 2599999998774
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.40 E-value=1.9e-13 Score=90.92 Aligned_cols=48 Identities=35% Similarity=0.674 Sum_probs=41.6
Q ss_pred CccccccccccccccCCeeeec-CCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~-C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
..|+||+++|.+++ .++.|+ |+|+||..||.+|++.. .+||+||+++.
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~~C~H~f~~~Ci~~w~~~~--------~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGE--EARFLPRCGHGFHAECVDMWLGSH--------STCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTS--CCEECSSSCCEECTTHHHHTTTTC--------CSCSSSCCCSC
T ss_pred CcCccCCccccCCC--ceEECCCCCCcccHHHHHHHHHcC--------CcCcCCCCEeE
Confidence 67999999999876 788887 99999999999999763 25999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=3.8e-13 Score=93.43 Aligned_cols=50 Identities=32% Similarity=0.759 Sum_probs=43.6
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|+||++.|..++ .++.|+|+|+||..||.+|++... +||+||+.|...
T Consensus 15 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~--------~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 15 EKCTICLSILEEGE--DVRRLPCMHLFHQVCVDQWLITNK--------KCPICRVDIEAQ 64 (69)
T ss_dssp CSBTTTTBCCCSSS--CEEECTTSCEEEHHHHHHHHHHCS--------BCTTTCSBSCSC
T ss_pred CCCeeCCccccCCC--cEEEeCCCCHHHHHHHHHHHHcCC--------CCcCcCccccCc
Confidence 78999999998765 688899999999999999998742 599999998754
No 5
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.38 E-value=2.3e-13 Score=100.49 Aligned_cols=51 Identities=25% Similarity=0.548 Sum_probs=43.9
Q ss_pred CCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
...|+||++.|..++ .++.|+|+|+||..||++|++.. .+||+||+.+.++
T Consensus 40 ~~~C~IC~~~~~~~~--~~~~l~C~H~Fh~~Ci~~wl~~~--------~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 40 EMCCPICCSEYVKGD--VATELPCHHYFHKPCVSIWLQKS--------GTCPVCRCMFPPP 90 (91)
T ss_dssp CSEETTTTEECCTTC--EEEEETTTEEEEHHHHHHHHTTT--------CBCTTTCCBSSCC
T ss_pred CCCCcccChhhcCCC--cEEecCCCChHHHHHHHHHHHcC--------CcCcCcCccCCCC
Confidence 367999999998875 67789999999999999999763 2599999998763
No 6
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.36 E-value=3.2e-13 Score=102.12 Aligned_cols=71 Identities=25% Similarity=0.410 Sum_probs=50.2
Q ss_pred eeeeecceeeccCCCCCCCcccccccccccccc------------CCee-eecCCCccCHHHHHHHHhcCCCCCCCCCCC
Q 028040 34 CVVRTYSEWVIDGEYDWPPKCCQCQAVLEEESG------------SETT-RLGCLHVIHTSCLVSHIKSFPPHTAPAGYV 100 (215)
Q Consensus 34 CvVqsYlqwL~Dsdyd~~~~C~ICle~L~~gD~------------~evv-RL~C~HvFH~~CLd~Wl~~~p~nTap~g~~ 100 (215)
=++++|++.+.+.. + ..|+||+++|..++. ..++ .|+|+|+||.+||++|+..... ....+
T Consensus 11 ~~i~~~~~~~~~~~-~--~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~---~~~~~ 84 (114)
T 1v87_A 11 QVIRKYTEELKVAP-E--EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK---DGSLQ 84 (114)
T ss_dssp HHHHHHEEECSSCC-S--CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC---SSCCB
T ss_pred HHHHHHHHhccCCC-C--CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC---CCCCc
Confidence 35678888876553 3 589999999976420 1233 4689999999999999964210 12457
Q ss_pred CCCCCCCccC
Q 028040 101 CPLCSTTIWP 110 (215)
Q Consensus 101 CP~Cr~~I~P 110 (215)
||+||+.+..
T Consensus 85 CP~CR~~~~~ 94 (114)
T 1v87_A 85 CPSCKTIYGE 94 (114)
T ss_dssp CTTTCCBSSS
T ss_pred CCCCCCccCC
Confidence 9999997753
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.36 E-value=4.8e-13 Score=88.76 Aligned_cols=49 Identities=29% Similarity=0.577 Sum_probs=41.7
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
..|+||++.|.+++ +.++.|+|+|+||.+||++|++.. .+||+||++|-
T Consensus 6 ~~C~IC~~~~~~~~-~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSR-VVAHVLPCGHLLHRTCYEEMLKEG--------YRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTT-SCEEECTTSCEEETTHHHHHHHHT--------CCCTTSCCSSC
T ss_pred CcCcccChhhcCCC-cCeEecCCCCcccHHHHHHHHHcC--------CcCCCCCCcCC
Confidence 67999999997765 457778999999999999999874 35999999873
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.5e-13 Score=97.95 Aligned_cols=50 Identities=24% Similarity=0.584 Sum_probs=36.8
Q ss_pred Cccccccccccc----------cccCCeeeec-CCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEE----------ESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~----------gD~~evvRL~-C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
..|+||+++|.+ ++ +.++.|+ |+|+||.+||++||+... +||+||+++..
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~-~~~~~~~~C~H~FH~~Ci~~Wl~~~~--------~CP~CR~~~~~ 76 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQE-DCVVVWGECNHSFHNCCMSLWVKQNN--------RCPLCQQDWVV 76 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTT-TCCEEEETTSCEEEHHHHHHHTTTCC--------BCTTTCCBCCE
T ss_pred CCCcccChhhhccCcccccccCCC-ceEEEeCCCCCccChHHHHHHHHhCC--------CCCCcCCCcch
Confidence 456666666643 22 2566665 999999999999998742 59999998753
No 9
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.32 E-value=1e-12 Score=93.27 Aligned_cols=52 Identities=23% Similarity=0.577 Sum_probs=44.3
Q ss_pred CCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~ 112 (215)
...|+||++.|..++ .++.|+|+|+||..||.+|++.. .+||+||+.+....
T Consensus 15 ~~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 15 GLECPVCKEDYALGE--SVRQLPCNHLFHDSCIVPWLEQH--------DSCPVCRKSLTGQN 66 (78)
T ss_dssp SCCCTTTTSCCCTTS--CEEECTTSCEEETTTTHHHHTTT--------CSCTTTCCCCCCSC
T ss_pred CCCCeeCCccccCCC--CEEEeCCCCeecHHHHHHHHHcC--------CcCcCcCCccCCcc
Confidence 368999999998875 67788999999999999999754 35999999987653
No 10
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.7e-12 Score=93.77 Aligned_cols=56 Identities=27% Similarity=0.491 Sum_probs=44.9
Q ss_pred CccccccccccccccCCeeeecCC-----CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCL-----HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKD 116 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~-----HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~~i~d 116 (215)
..|.||++++++++ .+.++|. |.||.+||++||.... ..+||+||..+.....++.
T Consensus 16 ~~C~IC~~~~~~~~---~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~------~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 16 DICRICHCEGDDES---PLITPCHCTGSLHFVHQACLQQWIKSSD------TRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CCCSSSCCCCCSSS---CEECSSSCCSSSCCEETTHHHHHHHHHC------CSBCSSSCCBCCCCCCSCC
T ss_pred CCCeEcCccccCCC---eeEeccccCCcCCeeCHHHHHHHHhhCC------CCCCCCCCCeeecCcccCC
Confidence 68999999998764 4568996 9999999999998752 2469999999876654443
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=85.07 Aligned_cols=52 Identities=27% Similarity=0.489 Sum_probs=41.4
Q ss_pred CCccccccccccccc--cCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 51 PPKCCQCQAVLEEES--GSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 51 ~~~C~ICle~L~~gD--~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
...|+||++.|.+.. +..++.++|+|+||..||++|++.. .+||+||++|-.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC--------SSCTTTCCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC--------CCCCCCCCccCc
Confidence 367999999998641 0234778999999999999999873 259999998753
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.20 E-value=9.6e-12 Score=86.13 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=42.1
Q ss_pred Ccccccccccccc--ccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEE--SGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~g--D~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|+||++.|.+. +++..+.++|+|+||..||++|++.. .+||+||+++...
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINHK 64 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTTTCCBCCCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCCCCCccChh
Confidence 6799999999763 11245778999999999999999874 2599999998754
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.5e-11 Score=87.00 Aligned_cols=55 Identities=29% Similarity=0.491 Sum_probs=45.2
Q ss_pred CCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
...|+||++.|.+++ ...+.|+|||+||..||.+|++... ...+||+||+++...
T Consensus 15 ~~~C~IC~~~~~~~~-~~~~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 15 VLECPICMESFTEEQ-LRPKLLHCGHTICRQCLEKLLASSI-----NGVRCPFCSKITRIT 69 (88)
T ss_dssp CCBCTTTCCBCCTTS-SCEEECSSSCEEEHHHHHHHHHHCS-----SCBCCTTTCCCBCCS
T ss_pred CCCCccCCccccccC-CCeEECCCCChhhHHHHHHHHHcCC-----CCcCCCCCCCcccch
Confidence 478999999998765 3377789999999999999998742 246799999988654
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.18 E-value=1.8e-11 Score=82.83 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=41.8
Q ss_pred Ccccccccccccc--ccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEE--SGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~g--D~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|+||++.|.+. .++.++.++|+|+||.+||.+|++.. .+||+||+++...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINHK 57 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC--------SBCTTTCCBCTTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC--------CCCCCCCccCCcc
Confidence 5799999999763 11245778999999999999999873 2599999998653
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.14 E-value=5e-11 Score=91.89 Aligned_cols=49 Identities=22% Similarity=0.467 Sum_probs=38.0
Q ss_pred Ccccccccccccc-------------ccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 028040 52 PKCCQCQAVLEEE-------------SGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (215)
Q Consensus 52 ~~C~ICle~L~~g-------------D~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I 108 (215)
..|+||++.|++. ++..++.|+|+|+||..||++||+.. .+||+||+++
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~Cr~~~ 99 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPLDNREW 99 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC--------SBCSSSCSBC
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC--------CcCcCCCCcc
Confidence 5799999998743 20124557999999999999999863 2599999984
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.13 E-value=2.7e-11 Score=83.54 Aligned_cols=47 Identities=26% Similarity=0.574 Sum_probs=39.8
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
..|+||++.+.+ .++.++|+|+||..|+.+|++.. .+||+||+++..
T Consensus 6 ~~C~IC~~~~~~----~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 52 (68)
T 1chc_A 6 ERCPICLEDPSN----YSMALPCLHAFCYVCITRWIRQN--------PTCPLCKVPVES 52 (68)
T ss_dssp CCCSSCCSCCCS----CEEETTTTEEESTTHHHHHHHHS--------CSTTTTCCCCCC
T ss_pred CCCeeCCccccC----CcEecCCCCeeHHHHHHHHHhCc--------CcCcCCChhhHh
Confidence 679999999854 36788999999999999999864 259999998853
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=8.1e-11 Score=82.02 Aligned_cols=51 Identities=22% Similarity=0.497 Sum_probs=41.4
Q ss_pred CCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
...|+||++.|.+ .+.|+|+|+||..||..|++... ...+||+||+++...
T Consensus 20 ~~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 20 EVICPICLDILQK-----PVTIDCGHNFCLKCITQIGETSC-----GFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCBCTTTCSBCSS-----EEECTTCCEEEHHHHHHHCSSSC-----SCCCCSSSCCCCCCC
T ss_pred CCEeccCCcccCC-----eEEcCCCChhhHHHHHHHHHcCC-----CCCCCCCCCCcCCcc
Confidence 3789999999853 77789999999999999997421 245799999998653
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.4e-11 Score=85.62 Aligned_cols=46 Identities=22% Similarity=0.573 Sum_probs=39.3
Q ss_pred CCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
...|+||++.|.+ .+.++|+|+||..||.+|++.. .+||+||+++.
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN-----PVVTKCRHYFCESCALEHFRAT--------PRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS-----EEECTTSCEEEHHHHHHHHHHC--------SBCSSSCCBCC
T ss_pred CCCCcCCCchhcC-----eeEccCCCHhHHHHHHHHHHCC--------CcCCCcCcccc
Confidence 3679999999844 6679999999999999999863 35999999985
No 19
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.09 E-value=6.1e-11 Score=88.79 Aligned_cols=65 Identities=17% Similarity=0.337 Sum_probs=48.5
Q ss_pred CccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCCCcchHHHHHHHHhh
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIM 130 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~~i~d~~S~l~~~Lre~i~ 130 (215)
..|+||++.|.+ .+. ++|||+||..||.+|+.... ..||+||+++.+..-+ ..++.+.+.+.+.
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~FC~~Ci~~~~~~~~-------~~CP~Cr~~~~~~~l~---~~~~~~~i~~~~~ 87 (100)
T 3lrq_A 23 FRCFICMEKLRD-----ARLCPHCSKLCCFSCIRRWLTEQR-------AQCPHCRAPLQLRELV---NCRWAEEVTQQLD 87 (100)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHHHTC-------SBCTTTCCBCCGGGCE---ECTTHHHHHHHHH
T ss_pred CCCccCCccccC-----ccccCCCCChhhHHHHHHHHHHCc-------CCCCCCCCcCCHHHhH---hhHHHHHHHHHHH
Confidence 579999999953 667 89999999999999998742 4699999999664322 2344555555544
Q ss_pred h
Q 028040 131 L 131 (215)
Q Consensus 131 q 131 (215)
+
T Consensus 88 ~ 88 (100)
T 3lrq_A 88 T 88 (100)
T ss_dssp H
T ss_pred H
Confidence 3
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.5e-11 Score=84.38 Aligned_cols=46 Identities=26% Similarity=0.453 Sum_probs=39.5
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
..|+||++.|. +.+.|+|+|+||..||.+|++.. .+||+||+.|..
T Consensus 16 ~~C~IC~~~~~-----~~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 16 PECAICLQTCV-----HPVSLPCKHVFCYLCVKGASWLG--------KRCALCRQEIPE 61 (71)
T ss_dssp CBCSSSSSBCS-----SEEEETTTEEEEHHHHHHCTTCS--------SBCSSSCCBCCH
T ss_pred CCCccCCcccC-----CCEEccCCCHHHHHHHHHHHHCC--------CcCcCcCchhCH
Confidence 67999999984 37888999999999999999763 369999998864
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=9.6e-11 Score=80.86 Aligned_cols=48 Identities=27% Similarity=0.513 Sum_probs=39.4
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|+||++.+.+ .+.++|||+||..||.+|++.. ..+||+||+++...
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCS-----PKQTECGHRFCESCMAALLSSS-------SPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESS-----CCCCSSSCCCCHHHHHHHHTTS-------SCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcC-----eeECCCCCHHHHHHHHHHHHhC-------cCCCCCCCcCCChh
Confidence 679999999854 4558999999999999999632 34699999998653
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.3e-10 Score=81.58 Aligned_cols=48 Identities=29% Similarity=0.671 Sum_probs=40.1
Q ss_pred CccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~ 112 (215)
..|+||++.|.+ .+.| +|+|+||..||.+|++.. .+||+||+++....
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTITECLHTFCKSCIVRHFYYS--------NRCPKCNIVVHQTQ 64 (72)
T ss_dssp GSCTTTSSCCSS-----CEECSSSCCEECHHHHHHHHHHC--------SSCTTTCCCCCSSC
T ss_pred CCCCCCChHHHC-----cCEECCCCCHHHHHHHHHHHHcC--------CcCCCcCcccCccc
Confidence 679999999854 5565 999999999999999863 35999999987643
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.07 E-value=1.4e-10 Score=82.21 Aligned_cols=52 Identities=15% Similarity=0.440 Sum_probs=42.1
Q ss_pred CCccccccccccccccCCeeeec-CCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKN 113 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~-C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~~ 113 (215)
...|+||++.|.+ .+.|+ |+|+||..||..|++... ...||+||+++..++.
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~------~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 15 ELLCLICKDIMTD-----AVVIPCCGNSYCDECIRTALLESD------EHTCPTCHQNDVSPDA 67 (74)
T ss_dssp GGSCSSSCCCCTT-----CEECSSSCCEECTTHHHHHHHHSS------SSCCSSSCCSSCCTTT
T ss_pred CCCCcCCChHHhC-----CeEcCCCCCHHHHHHHHHHHHhcC------CCcCCCCCCcCCCccc
Confidence 3679999999854 67798 999999999999998642 3469999998765543
No 24
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=4e-11 Score=83.33 Aligned_cols=47 Identities=21% Similarity=0.557 Sum_probs=39.5
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~ 112 (215)
..|+||++.+. + +.|+|+|+||..||.+|++.. .+||+||+++....
T Consensus 16 ~~C~IC~~~~~-----~-~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 16 EECCICMDGRA-----D-LILPCAHSFCQKCIDKWSDRH--------RNCPICRLQMTGAN 62 (70)
T ss_dssp CCCSSSCCSCC-----S-EEETTTEEECHHHHHHSSCCC--------SSCHHHHHCTTCCC
T ss_pred CCCeeCCcCcc-----C-cccCCCCcccHHHHHHHHHCc--------CcCCCcCCcccCCC
Confidence 78999999873 3 778999999999999999843 35999999987643
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=1.9e-10 Score=79.12 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=40.3
Q ss_pred Cccccccc-cccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQA-VLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle-~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|+||++ .|.+.. ...+.++|||+||.+||++|+.+. ..+||+||+++...
T Consensus 4 ~~C~IC~~~~~~~~~-~~~~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 4 QGCPRCKTTKYRNPS-LKLMVNVCGHTLCESCVDLLFVRG-------AGNCPECGTPLRKS 56 (65)
T ss_dssp TCCSTTTTHHHHCSS-CCEEECTTCCCEEHHHHHHHHHTT-------SSSCTTTCCCCSSC
T ss_pred CcCCcCCCCccCCCc-cCeecCCCCCHhHHHHHHHHHHcC-------CCcCCCCCCccccc
Confidence 56999999 776643 122457999999999999998652 24699999998653
No 26
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.04 E-value=2.9e-10 Score=87.47 Aligned_cols=50 Identities=20% Similarity=0.462 Sum_probs=41.8
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKN 113 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~~ 113 (215)
..|+||++.|.+ .+.++|||+||..||..|+... .+.||+||+++.....
T Consensus 53 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~~~ 102 (124)
T 3fl2_A 53 FQCICCQELVFR-----PITTVCQHNVCKDCLDRSFRAQ-------VFSCPACRYDLGRSYA 102 (124)
T ss_dssp TBCTTTSSBCSS-----EEECTTSCEEEHHHHHHHHHTT-------CCBCTTTCCBCCTTCC
T ss_pred CCCCcCChHHcC-----cEEeeCCCcccHHHHHHHHhHC-------cCCCCCCCccCCCCCC
Confidence 569999999853 7778999999999999999842 3579999999977443
No 27
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.04 E-value=3.6e-10 Score=82.25 Aligned_cols=52 Identities=15% Similarity=0.440 Sum_probs=41.8
Q ss_pred CCccccccccccccccCCeeeec-CCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKN 113 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~-C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~~ 113 (215)
.-.|+||++.|.+ .+.|+ |||+|+..||..|+.... .+.||+||+++.....
T Consensus 13 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~------~~~CP~Cr~~~~~~~~ 65 (92)
T 3ztg_A 13 ELLCLICKDIMTD-----AVVIPCCGNSYCDECIRTALLESD------EHTCPTCHQNDVSPDA 65 (92)
T ss_dssp TTEETTTTEECSS-----CEECTTTCCEECHHHHHHHHHHCT------TCCCTTTCCSSCCTTS
T ss_pred CCCCCCCChhhcC-----ceECCCCCCHHHHHHHHHHHHhcC------CCcCcCCCCcCCCccc
Confidence 3679999999853 77888 999999999999997642 3579999999754333
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.04 E-value=3.3e-10 Score=80.14 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=40.5
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
-.|+||++.|.+ .+.++|||+|+..||.+|++.. ..+||+||+++...
T Consensus 9 ~~C~IC~~~~~~-----Pv~~~CgH~fc~~Ci~~~~~~~-------~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 9 FRCPISLELMKD-----PVIVSTGQTYERSSIQKWLDAG-------HKTCPKSQETLLHA 56 (78)
T ss_dssp SSCTTTSCCCSS-----EEEETTTEEEEHHHHHHHHTTT-------CCBCTTTCCBCSSC
T ss_pred CCCCCccccccC-----CEEcCCCCeecHHHHHHHHHHC-------cCCCCCCcCCCChh
Confidence 579999999843 7778999999999999999752 34699999998754
No 29
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=4.8e-10 Score=83.78 Aligned_cols=68 Identities=22% Similarity=0.398 Sum_probs=48.3
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCC-CcchHHHHHHHHh
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKD-SGSRLHSLLKEAI 129 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~~i~d-~~S~l~~~Lre~i 129 (215)
..|+||++.+.+ .+.++|||+||..||..|+.... ...+||+||.++....-..+ .-..+.+.+++.+
T Consensus 22 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (112)
T 1jm7_A 22 LECPICLELIKE-----PVSTKCDHIFCKFCMLKLLNQKK-----GPSQCPLCKNDITKRSLQESTRFSQLVEELLKII 90 (112)
T ss_dssp TSCSSSCCCCSS-----CCBCTTSCCCCSHHHHHHHHSSS-----SSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHH
T ss_pred CCCcccChhhcC-----eEECCCCCHHHHHHHHHHHHhCC-----CCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHHH
Confidence 569999999854 55689999999999999998642 23579999999886532211 1234555555443
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.00 E-value=6e-10 Score=78.71 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=42.7
Q ss_pred CCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
...|+||++.|.+ .+.++|+|+||..||..|++.... ......||+||+.+...
T Consensus 19 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~--~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 19 EVTCPICLELLKE-----PVSADCNHSFCRACITLNYESNRN--TDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTSCTTTCSCCSS-----CEECTTSCCBCHHHHHHHHHHSBC--TTSCBCCTTTCCCCCTT
T ss_pred CCCCcCCChhhCc-----ceeCCCCCHHHHHHHHHHHHhccC--CCCCCCCCCCCCcCCHH
Confidence 3679999999854 567899999999999999987421 11356799999998754
No 31
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.00 E-value=5.7e-11 Score=93.55 Aligned_cols=49 Identities=22% Similarity=0.497 Sum_probs=0.0
Q ss_pred Cccccccccccc-------------cccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 028040 52 PKCCQCQAVLEE-------------ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (215)
Q Consensus 52 ~~C~ICle~L~~-------------gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I 108 (215)
.+|+||+++|++ ++.-.++.++|+|+||..||++||+... +||+||++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~--------~CP~Cr~~~ 110 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ--------VCPLDNREW 110 (117)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC--------cCCCCCCee
Confidence 689999999975 3301123358999999999999998742 499999985
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.98 E-value=3.1e-10 Score=86.00 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=42.2
Q ss_pred Ccccccccccccc--ccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEE--SGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~g--D~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|+||++.|.+. +++.++.++|||+||+.||++|++.. .+||+||+.+...
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINHK 61 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--------SBCTTTCCBCTTT
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--------CCCCCCCCcCccc
Confidence 5699999999763 11356889999999999999999864 2599999988654
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=5.6e-10 Score=76.17 Aligned_cols=44 Identities=23% Similarity=0.544 Sum_probs=36.1
Q ss_pred CCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLC 104 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~C 104 (215)
...|+||++.|.+ .+.|+|||+||..||.+|++... ...+||+|
T Consensus 20 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQK-----PVTIDCGHNFCLKCITQIGETSC-----GFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSS-----CEECTTSSEECHHHHHHHHHHCS-----SCCCCSCC
T ss_pred CCCCCcCCchhCC-----eEEeCCCCcchHHHHHHHHHcCC-----CCCcCcCC
Confidence 3789999999853 67789999999999999998531 23569998
No 34
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.96 E-value=2.8e-10 Score=89.54 Aligned_cols=46 Identities=26% Similarity=0.623 Sum_probs=39.1
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
..|+||++.|.+ .+.|+|||.||..||..|+... .+||+||++|-.
T Consensus 54 ~~C~iC~~~~~~-----~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE-----AVTLNCAHSFCSYCINEWMKRK--------IECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS-----EEEETTSCEEEHHHHHHHTTTC--------SBCTTTCCBCCC
T ss_pred CCCcccCcccCC-----ceECCCCCCccHHHHHHHHHcC--------CcCCCCCCcCCC
Confidence 469999999843 7789999999999999999764 359999999853
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=7.3e-10 Score=73.76 Aligned_cols=44 Identities=23% Similarity=0.674 Sum_probs=35.4
Q ss_pred CCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLC 104 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~C 104 (215)
...|+||++.+.+ .+.|+|+|+||..||.+|+.... ...+||+|
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKE-----PVIIECGHNFCKACITRWWEDLE-----RDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSS-----CCCCSSCCCCCHHHHHHHTTSSC-----CSCCCSCC
T ss_pred CCCCccCCcccCc-----cEeCCCCCccCHHHHHHHHHhcC-----CCCCCCCC
Confidence 3789999999854 45689999999999999986532 23579998
No 36
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1e-09 Score=77.56 Aligned_cols=54 Identities=24% Similarity=0.503 Sum_probs=41.9
Q ss_pred CCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
...|+||++.+.+ .+.|+|+|+||..||..|++.... ......||+||+.+...
T Consensus 19 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~--~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 19 EVTCPICLELLTQ-----PLSLDCGHSFCQACLTANHKKSML--DKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCTTTCSCCSS-----CBCCSSSCCBCTTHHHHHHHHHHH--TTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCcccCC-----ceeCCCCCHHHHHHHHHHHHHhhc--CCCCCcCCCCCCccCHH
Confidence 3679999999844 566899999999999999986210 01245799999998764
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.93 E-value=9.1e-10 Score=81.45 Aligned_cols=47 Identities=21% Similarity=0.506 Sum_probs=39.5
Q ss_pred CccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|+||++.|.+ .+.+ +|||.||..||..|+... .+||+||+.+..+
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLSYK--------TQCPTCCVTVTEP 70 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHTTC--------CBCTTTCCBCCGG
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHHHCC--------CCCCCCCCcCChh
Confidence 579999999854 5666 899999999999999853 3699999998763
No 38
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.93 E-value=4.3e-10 Score=79.19 Aligned_cols=54 Identities=22% Similarity=0.445 Sum_probs=42.2
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|+||++.|.+ .+.|+|||+||..||.+|++.... .......||+||+++..+
T Consensus 13 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~~~~~~-~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSLDCGHSLCRACITVSNKEAVT-SMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CEETTTTEECSS-----CCCCSSSCCCCHHHHSCCCCCCSS-SCCCCCCCSSSCCCCCSS
T ss_pred CCCcCCCcccCC-----eeECCCCCHHHHHHHHHHHHhccc-CCCCCCcCCCCCCcCCHh
Confidence 679999999854 566899999999999999986321 112356799999998753
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.91 E-value=6.5e-10 Score=84.22 Aligned_cols=51 Identities=27% Similarity=0.498 Sum_probs=41.2
Q ss_pred Cccccccccccccc--cCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEES--GSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD--~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
..|+||++.|.+.. ++..+.++|+|+||..||++|++.. .+||+||+++.+
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINH 125 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--------SBCTTTCCBCCG
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--------CCCCCCCCcCCh
Confidence 56999999997631 1245778999999999999999874 259999999865
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.88 E-value=2.3e-09 Score=86.29 Aligned_cols=50 Identities=22% Similarity=0.514 Sum_probs=41.9
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKN 113 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~~ 113 (215)
..|+||++.|.+ .+.++|+|+|+..||..|+... .+.||+||.++.....
T Consensus 79 ~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~~~ 128 (150)
T 1z6u_A 79 FMCVCCQELVYQ-----PVTTECFHNVCKDCLQRSFKAQ-------VFSCPACRHDLGQNYI 128 (150)
T ss_dssp TBCTTTSSBCSS-----EEECTTSCEEEHHHHHHHHHTT-------CCBCTTTCCBCCTTCC
T ss_pred CEeecCChhhcC-----CEEcCCCCchhHHHHHHHHHhC-------CCcCCCCCccCCCCCC
Confidence 579999999854 6679999999999999999852 3579999999987633
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.88 E-value=1.4e-09 Score=87.35 Aligned_cols=50 Identities=24% Similarity=0.600 Sum_probs=40.6
Q ss_pred CccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKN 113 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~~ 113 (215)
..|+||++.|.+ .+.+ +|||+||..||..|+... ...||+||.++....+
T Consensus 55 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~~~ 105 (165)
T 2ckl_B 55 LMCPICLDMLKN-----TMTTKECLHRFCADCIITALRSG-------NKECPTCRKKLVSKRS 105 (165)
T ss_dssp HBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHHTT-------CCBCTTTCCBCCSGGG
T ss_pred CCCcccChHhhC-----cCEeCCCCChhHHHHHHHHHHhC-------cCCCCCCCCcCCCccc
Confidence 479999999854 5665 999999999999999852 3469999999865433
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.86 E-value=1.3e-09 Score=82.64 Aligned_cols=47 Identities=26% Similarity=0.658 Sum_probs=39.7
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
..|+||++.|.+ .+.|+|||+|+..||..|+... ...||+||+.+..
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTVEKA-------SLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCCCTT-------TSBCTTTCCBCHH
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHHhHC-------cCCCCCCCcccCc
Confidence 569999999853 7788999999999999999752 3579999999863
No 43
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.84 E-value=1.9e-09 Score=81.83 Aligned_cols=48 Identities=25% Similarity=0.715 Sum_probs=40.6
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|+||++.|.+ .+.++|||+||..||.+|++.. +.+||+||.++...
T Consensus 24 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 24 ISCQICEHILAD-----PVETSCKHLFCRICILRCLKVM-------GSYCPSCRYPCFPT 71 (116)
T ss_dssp TBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHT-------CSBCTTTCCBCCGG
T ss_pred CCCCCCCcHhcC-----cEEcCCCCcccHHHHHHHHhHC-------cCcCCCCCCCCCHh
Confidence 579999999844 6668999999999999999873 24699999998764
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.80 E-value=2.7e-09 Score=80.24 Aligned_cols=47 Identities=23% Similarity=0.676 Sum_probs=40.0
Q ss_pred CccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|+||++.|.+ .+.+ +|||+||..||..|+... ..||+||+.+...
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 16 LMCVLCGGYFID-----ATTIIECLHSFCKTCIVRYLETS--------KYCPICDVQVHKT 63 (108)
T ss_dssp TBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHTSC--------SBCTTTCCBSCSS
T ss_pred CCCccCChHHhC-----cCEeCCCCChhhHHHHHHHHHhC--------CcCcCCCcccccc
Confidence 679999999843 6676 999999999999999863 4699999998764
No 45
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=2.3e-09 Score=78.37 Aligned_cols=47 Identities=21% Similarity=0.447 Sum_probs=38.0
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I 108 (215)
..|+||.+.|..++ .. ..|+|.||..||++||+.... -+||+|+++.
T Consensus 16 ~~C~IC~~~i~~g~--~C--~~C~h~fH~~Ci~kWl~~~~~------~~CP~Cr~~w 62 (74)
T 2ct0_A 16 KICNICHSLLIQGQ--SC--ETCGIRMHLPCVAKYFQSNAE------PRCPHCNDYW 62 (74)
T ss_dssp CBCSSSCCBCSSSE--EC--SSSCCEECHHHHHHHSTTCSS------CCCTTTCSCC
T ss_pred CcCcchhhHcccCC--cc--CCCCchhhHHHHHHHHHhcCC------CCCCCCcCcC
Confidence 78999999998653 22 399999999999999987532 2599999864
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.77 E-value=3.2e-09 Score=81.24 Aligned_cols=48 Identities=21% Similarity=0.476 Sum_probs=40.6
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|+||++.|.+ .+.++|||+|+..||.+|++... .+||+||+++...
T Consensus 19 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~-------~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSIRDAG-------HKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHHC-------SBCTTTCCBCCGG
T ss_pred CCCCcCChhhcC-----eEECCcCChhhHHHHHHHHhhCC-------CCCCCCCCCcCHH
Confidence 679999999854 67789999999999999998742 3699999998764
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.72 E-value=1e-08 Score=74.71 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=40.5
Q ss_pred CCccccccccccccccCCeeee--cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
+..|+||++++...| ...+ +|||.|+..||..+.+. ..+.||.||+++...
T Consensus 11 ~~~CpICle~~~~~d---~~~~p~~CGH~fC~~Cl~~~~~~-------~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 11 PVECPLCMEPLEIDD---INFFPCTCGYQICRFCWHRIRTD-------ENGLCPACRKPYPED 63 (78)
T ss_dssp CCBCTTTCCBCCTTT---TTCCSSTTSCCCCHHHHHHHTTS-------SCSBCTTTCCBCSSC
T ss_pred CCcCCccCccCcccc---ccccccCCCCCcCHHHHHHHHhc-------CCCCCCCCCCccCCC
Confidence 378999999996654 4444 49999999999999854 246799999998764
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.62 E-value=2e-08 Score=76.72 Aligned_cols=45 Identities=33% Similarity=0.867 Sum_probs=38.3
Q ss_pred CccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|+||++.|.+ .+.| +|||+|+..||..|+. ..||+||+++...
T Consensus 23 ~~C~IC~~~~~~-----pv~~~~CgH~fC~~Ci~~~~~----------~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 23 LRCSRCTNILRE-----PVCLGGCEHIFCSNCVSDCIG----------TGCPVCYTPAWIQ 68 (117)
T ss_dssp TSCSSSCSCCSS-----CBCCCSSSCCBCTTTGGGGTT----------TBCSSSCCBCSCS
T ss_pred CCCCCCChHhhC-----ccEeCCCCCHHHHHHHHHHhc----------CCCcCCCCcCccc
Confidence 679999999843 6777 9999999999999997 2499999998643
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=1e-08 Score=69.38 Aligned_cols=45 Identities=33% Similarity=0.680 Sum_probs=37.1
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~ 112 (215)
..|+||++.|.+ .+.|+|+|+|+..||.+| ...||+||+.+..+.
T Consensus 7 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~-----------~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 7 LRCQQCQAEAKC-----PKLLPCLHTLCSGCLEAS-----------GMQCPICQAPWPLGA 51 (56)
T ss_dssp SSCSSSCSSCBC-----CSCSTTSCCSBTTTCSSS-----------SSSCSSCCSSSSCCS
T ss_pred CCceEeCCccCC-----eEEcCCCCcccHHHHccC-----------CCCCCcCCcEeecCC
Confidence 679999999854 677999999999999874 235999999987654
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.52 E-value=1.5e-08 Score=80.93 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=40.3
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
-.|+||++.|.+ .+.++|||+|+..||.+|++.. ..+||+||.+|...
T Consensus 32 ~~C~IC~~~~~~-----pv~~~CgH~FC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 32 YLCSACRNVLRR-----PFQAQCGHRYCSFCLASILSSG-------PQNCAACVHEGIYE 79 (141)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHGGGS-------CEECHHHHHTTCCC
T ss_pred cCCCCCChhhcC-----cEECCCCCccCHHHHHHHHhcC-------CCCCCCCCCccccc
Confidence 679999999954 6778999999999999999753 24699999987654
No 51
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=5.1e-08 Score=81.98 Aligned_cols=70 Identities=9% Similarity=0.053 Sum_probs=52.2
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCCCcchHHHHHHHHhhh
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIML 131 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~~i~d~~S~l~~~Lre~i~q 131 (215)
-.|+||++.|. +.|.++|||+|-+.||.+|+... +.+||+|+.++-+. ++. .+-.|.+.+.+.+.+
T Consensus 209 ~~c~i~~~~~~-----dPv~~~~gh~f~~~~i~~~~~~~-------~~~cP~~~~~~~~~-~l~-~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 209 LCGKISFELMR-----EPCITPSGITYDRKDIEEHLQRV-------GHFNPVTRSPLTQE-QLI-PNLAMKEVIDAFISE 274 (281)
T ss_dssp TBCTTTCSBCS-----SEEECSSCCEEETTHHHHHHHHT-------CSSCTTTCCCCCGG-GCE-ECHHHHHHHHHHHTT
T ss_pred cCCcCcCCHhc-----CCeECCCCCEECHHHHHHHHHHC-------CCCCcCCCCCCchh-cCc-ccHHHHHHHHHHHHH
Confidence 57999999984 48889999999999999999863 23499999998653 221 133455556666666
Q ss_pred hhhh
Q 028040 132 TGLE 135 (215)
Q Consensus 132 ~~wA 135 (215)
.+|+
T Consensus 275 ~~~~ 278 (281)
T 2c2l_A 275 NGWV 278 (281)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 6665
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.51 E-value=1e-07 Score=71.98 Aligned_cols=70 Identities=9% Similarity=0.052 Sum_probs=51.9
Q ss_pred CccccccccccccccCCeeeecCC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCCCcchHHHHHHHHhh
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIM 130 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~-HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~~i~d~~S~l~~~Lre~i~ 130 (215)
-.|+||++.|. +.|.++|| |+|-+.||..|+... .+||.|+.++-.. ++. .+-.|...+.+.+.
T Consensus 23 ~~CpI~~~~m~-----dPV~~~cG~htf~r~cI~~~l~~~--------~~cP~~~~~l~~~-~L~-pn~~Lk~~I~~~~~ 87 (98)
T 1wgm_A 23 FLDPIMSTLMC-----DPVVLPSSRVTVDRSTIARHLLSD--------QTDPFNRSPLTMD-QIR-PNTELKEKIQRWLA 87 (98)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHTTTS--------CBCTTTCSBCCTT-TSE-ECHHHHHHHHHHHH
T ss_pred cCCcCcccccc-----CCeECCCCCeEECHHHHHHHHHhC--------CCCCCCCCCCChh-hce-EcHHHHHHHHHHHH
Confidence 67999999984 48899999 999999999999852 3699999998654 332 13345555555555
Q ss_pred hhhhhh
Q 028040 131 LTGLEK 136 (215)
Q Consensus 131 q~~wAr 136 (215)
+..|++
T Consensus 88 ~~~~~~ 93 (98)
T 1wgm_A 88 ERKQQS 93 (98)
T ss_dssp HSTTCS
T ss_pred Hcchhh
Confidence 666654
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.44 E-value=9.7e-08 Score=88.55 Aligned_cols=48 Identities=31% Similarity=0.518 Sum_probs=40.0
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|+||++.+. +++.++|||+||..|+..|+... ..+||+||+++-..
T Consensus 333 ~~C~ICle~~~-----~pv~lpCGH~FC~~Ci~~wl~~~-------~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDK-----DVKIEPCGHLMCTSCLTSWQESE-------GQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBC-----CEEEETTCCEECHHHHHHHHHHT-------CSBCTTTCCBCCEE
T ss_pred CCCCccCcCCC-----CeEEeCCCChhhHHHHHHHHhcC-------CCCCCCCCCccCCc
Confidence 57999999873 47889999999999999999842 23599999988653
No 54
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.42 E-value=1.1e-07 Score=76.34 Aligned_cols=48 Identities=21% Similarity=0.476 Sum_probs=40.4
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
-.|+||++.|.+ .+.++|||+|...||.+|++... .+||+||.++...
T Consensus 19 ~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~~~-------~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSIRDAG-------HKCPVDNEILLEN 66 (170)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHHC-------SBCTTTCCBCCGG
T ss_pred CCCCCCChhhcC-----cEECCCCCHHHHHHHHHHHHhCC-------CCCCCCccCcchh
Confidence 679999999854 67789999999999999998632 2699999998754
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.42 E-value=1e-07 Score=67.80 Aligned_cols=41 Identities=24% Similarity=0.465 Sum_probs=35.4
Q ss_pred CccccccccccccccCCeeeecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
..|+||++.+. +.+.|+|||+ |...|+..| . +||+||++|.
T Consensus 25 ~~C~iC~~~~~-----~~~~~pCgH~~~C~~C~~~~--~----------~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRNI-----AIVFVPCGHLVTCKQCAEAV--D----------KCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSBC-----CEEEETTCCBCCCHHHHTTC--S----------BCTTTCCBCS
T ss_pred CCCCCCCCCCC-----CEEEcCCCChhHHHHhhhcC--c----------cCCCcCcCcc
Confidence 67999999874 4788999999 999999999 1 3999999875
No 56
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.37 E-value=2.3e-07 Score=64.70 Aligned_cols=46 Identities=26% Similarity=0.560 Sum_probs=34.6
Q ss_pred CccccccccccccccCCeeeecCC--C---ccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCL--H---VIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~--H---vFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I 108 (215)
..|.||+++. ++ + ..+||. | .||.+||++|+..... .+||+|+..+
T Consensus 7 ~~CrIC~~~~--~~--~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~------~~C~~C~~~~ 57 (60)
T 1vyx_A 7 PVCWICNEEL--GN--E-RFRACGCTGELENVHRSCLSTWLTISRN------TACQICGVVY 57 (60)
T ss_dssp CEETTTTEEC--SC--C-CCCSCCCSSGGGSCCHHHHHHHHHHHTC------SBCTTTCCBC
T ss_pred CEeEEeecCC--CC--c-eecCcCCCCchhhhHHHHHHHHHHhCCC------CccCCCCCee
Confidence 6899999872 22 3 357855 4 9999999999986432 3599999875
No 57
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.36 E-value=3.9e-07 Score=66.66 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=40.4
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
-.|+||++.|. +.+.++|||+|-+.||..|+... .+||.|+.++-..
T Consensus 15 ~~CpI~~~~m~-----dPV~~~cGhtf~r~~I~~~l~~~--------~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 15 FRDPLMDTLMT-----DPVRLPSGTVMDRSIILRHLLNS--------PTDPFNRQMLTES 61 (85)
T ss_dssp TBCTTTCSBCS-----SEEECTTSCEEEHHHHHHHHHHC--------SBCTTTCCBCCGG
T ss_pred eECcccCchhc-----CCeECCCCCEECHHHHHHHHhcC--------CCCCCCcCCCChH
Confidence 67999999984 48899999999999999999863 3699999988653
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=3.7e-07 Score=67.76 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=39.0
Q ss_pred CccccccccccccccCCeeeec-CCCccCHHHHHHHHhcCCCCCCCCCCCCCC--CCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPL--CSTT 107 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~-C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~--Cr~~ 107 (215)
-.|+||++.|. +.|.++ |||+|-+.||..|+..... ....++||+ |+..
T Consensus 8 ~~CPI~~~~~~-----dPV~~~~cGh~f~r~cI~~~l~~~~~--~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 8 FTCPITKEEMK-----KPVKNKVCGHTYEEDAIVRMIESRQK--RKKKAYCPQIGCSHT 59 (94)
T ss_dssp CBCTTTCSBCS-----SEEEESSSCCEEEHHHHHHHHHHHHT--TTCCBCCCSTTCCCC
T ss_pred eECcCcCchhc-----CCEEcCCCCCeecHHHHHHHHHHccC--cCCCCCCCcCcCccc
Confidence 67999999985 488895 9999999999999986411 113567999 9876
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.31 E-value=5.8e-07 Score=68.01 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=40.6
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
-.|+||++.|. +.|.++|||+|-+.||..|+... .+||.|+.++-..
T Consensus 30 ~~CpI~~~~m~-----dPV~~~cGhtf~r~~I~~~l~~~--------~~cP~~~~~l~~~ 76 (100)
T 2kre_A 30 FRDPLMDTLMT-----DPVRLPSGTIMDRSIILRHLLNS--------PTDPFNRQTLTES 76 (100)
T ss_dssp TBCTTTCSBCS-----SEEEETTTEEEEHHHHHHHTTSC--------SBCSSSCCBCCTT
T ss_pred hCCcCccCccc-----CCeECCCCCEEchHHHHHHHHcC--------CCCCCCCCCCChh
Confidence 67999999984 48999999999999999999752 4699999998654
No 60
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.29 E-value=1.2e-07 Score=87.49 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=40.4
Q ss_pred CccccccccccccccCCee----eecCCCccCHHHHHHHHhcCCCCC-C--CCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETT----RLGCLHVIHTSCLVSHIKSFPPHT-A--PAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evv----RL~C~HvFH~~CLd~Wl~~~p~nT-a--p~g~~CP~Cr~~I~ 109 (215)
..|+||++.+.+++ +... .+.|+|.||..||.+||++.+... + -..-.||.||++|-
T Consensus 309 ~ECaICys~~l~~g-~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 309 LRCNICFAYRLDGG-EVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCSSSCCSSCTTC-CCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCcccceeecCCC-CCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 78999999998743 1222 247999999999999998753210 0 01135999999885
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.26 E-value=5.2e-07 Score=62.74 Aligned_cols=45 Identities=22% Similarity=0.387 Sum_probs=36.3
Q ss_pred CccccccccccccccCCeeee--cCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETTRL--GCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL--~C~Hv-FH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
..|.||++.+.+ ++.+ +|||+ |-.+|+.+|.+.. ..||+||++|.
T Consensus 9 ~~C~IC~~~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~~--------~~CPiCR~~i~ 56 (64)
T 2vje_A 9 EPCVICQGRPKN-----GCIVHGKTGHLMACFTCAKKLKKRN--------KPCPVCRQPIQ 56 (64)
T ss_dssp SCCTTTSSSCSC-----EEEEETTEEEEEECHHHHHHHHHTT--------CCCTTTCCCCC
T ss_pred CCCCcCCCCCCC-----EEEECCCCCChhhHHHHHHHHHHcC--------CcCCCcCcchh
Confidence 579999998744 4444 99999 6799999999753 25999999884
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.24 E-value=7.3e-08 Score=70.93 Aligned_cols=53 Identities=21% Similarity=0.441 Sum_probs=40.0
Q ss_pred CccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCC--CCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPL--CSTT 107 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~--Cr~~ 107 (215)
..|+||++++... +.++| +|+|.|..+||..|++..-........+||. |+..
T Consensus 6 ~~C~IC~~~~~~~---~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 6 SGCKLCLGEYPVE---QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CCCSSSCCCCBGG---GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred cCCcccCcccccc---cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5699999998765 47777 6999999999999987531111112468999 9987
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=5.2e-07 Score=63.97 Aligned_cols=42 Identities=24% Similarity=0.398 Sum_probs=34.4
Q ss_pred CccccccccccccccCCeeeecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
..|+||++.+. +++.|+|+|+ |...|+... ..||+||++|..
T Consensus 26 ~~C~IC~~~~~-----~~~~~pCgH~~~C~~C~~~~------------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNI-----AIVFVPCGHLVTCKQCAEAV------------DKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCC-----CBCCSSSCCCCBCHHHHHHC------------SBCTTTCCBCCC
T ss_pred CCCCcCCCCCC-----CEEEecCCCHHHHHHHhhCC------------CCCccCCceecC
Confidence 56999999873 3777999999 999999643 249999999864
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.21 E-value=1.1e-06 Score=73.74 Aligned_cols=70 Identities=9% Similarity=0.047 Sum_probs=52.2
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCCCcchHHHHHHHHhhh
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIML 131 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~~i~d~~S~l~~~Lre~i~q 131 (215)
-.|+||++.|. +.|.++|||+|-+.||..|+... +.+||.|+.++-.. ++. .+-.|...+.+...+
T Consensus 107 f~CPI~~elm~-----DPV~~~~Ghtfer~~I~~~l~~~-------~~tcP~t~~~l~~~-~L~-pN~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 107 LCGKISFELMR-----EPCITPSGITYDRKDIEEHLQRV-------GHFDPVTRSPLTQD-QLI-PNLAMKEVIDAFIQE 172 (179)
T ss_dssp GBCTTTCSBCS-----SEEECTTSCEEEHHHHHHHHHHT-------CSBCTTTCCBCCGG-GCE-ECHHHHHHHHHHHHH
T ss_pred hcccCccccCC-----CCeECCCCCEECHHHHHHHHHhC-------CCCCCCCcCCCChh-hCc-chHHHHHHHHHHHHH
Confidence 67999999985 48889999999999999999873 22599999988653 322 133455556666666
Q ss_pred hhhh
Q 028040 132 TGLE 135 (215)
Q Consensus 132 ~~wA 135 (215)
.+|+
T Consensus 173 ~~~~ 176 (179)
T 2f42_A 173 NGWV 176 (179)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 6665
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.18 E-value=7.6e-07 Score=61.71 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=36.6
Q ss_pred CccccccccccccccCCeeeecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
..|.||++...+. .++.++|||+ |-++|+.+|.+.. .+||+||++|.
T Consensus 8 ~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~--------~~CPiCR~~i~ 55 (63)
T 2vje_B 8 KPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAG--------ASCPICKKEIQ 55 (63)
T ss_dssp SBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTT--------CBCTTTCCBCC
T ss_pred CCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhC--------CcCCCcCchhh
Confidence 6799999986442 1233499998 9999999998753 35999999884
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=3.9e-06 Score=59.19 Aligned_cols=42 Identities=24% Similarity=0.551 Sum_probs=34.6
Q ss_pred CccccccccccccccCCeeeecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
..|.||++... +++-|+|+|+ |-..|+... ..||+||++|..
T Consensus 16 ~~C~IC~~~~~-----~~v~~pCgH~~~C~~C~~~~------------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 16 KDCVVCQNGTV-----NWVLLPCRHTCLCDGCVKYF------------QQCPMCRQFVQE 58 (68)
T ss_dssp SCCSSSSSSCC-----CCEETTTTBCCSCTTHHHHC------------SSCTTTCCCCCC
T ss_pred CCCCCcCcCCC-----CEEEECCCChhhhHHHHhcC------------CCCCCCCcchhc
Confidence 67999999753 4888999999 999999841 249999999864
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.83 E-value=5.9e-06 Score=59.75 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=35.1
Q ss_pred CccccccccccccccCCeeeecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
..|.||++.+. +++.|+|||+ |-..|+..|. .||+||++|-.
T Consensus 19 ~~C~IC~~~~~-----~~v~~pCgH~~~C~~C~~~~~------------~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEI-----NSTFCPCGHTVCCESCAAQLQ------------SCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBC-----CEEEETTCBCCBCHHHHTTCS------------BCTTTCCBCCE
T ss_pred CEeEEeCcccC-----cEEEECCCCHHHHHHHHHhcC------------cCCCCCchhhC
Confidence 57999998863 4888999999 9999998773 39999998753
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.65 E-value=1.1e-05 Score=73.28 Aligned_cols=41 Identities=24% Similarity=0.523 Sum_probs=35.7
Q ss_pred CccccccccccccccCCeeeecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
..|+||++.+. +++.|+|||. |...|+..| . .||+||++|-
T Consensus 296 ~~C~IC~~~~~-----~~v~lpCgH~~fC~~C~~~~--~----------~CP~CR~~i~ 337 (345)
T 3t6p_A 296 RTCKVCMDKEV-----SVVFIPCGHLVVCQECAPSL--R----------KCPICRGIIK 337 (345)
T ss_dssp CBCTTTSSSBC-----CEEEETTCCEEECTTTGGGC--S----------BCTTTCCBCC
T ss_pred CCCCccCCcCC-----ceEEcCCCChhHhHHHHhcC--C----------cCCCCCCCcc
Confidence 67999999984 4888999999 999999988 1 3999999885
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.44 E-value=5.8e-05 Score=67.06 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=40.3
Q ss_pred CCccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCC--CCCCccC
Q 028040 51 PPKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPL--CSTTIWP 110 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~--Cr~~I~P 110 (215)
.-.|+||++.|.+ .|+. .|||+|-+.||.+|++.. ...+||+ |++.+-.
T Consensus 181 el~CPIcl~~f~D-----PVts~~CGHsFcR~cI~~~~~~~------~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 181 ELTCPITCKPYEA-----PLISRKCNHVFDRDGIQNYLQGY------TTRDCPQAACSQVVSM 232 (267)
T ss_dssp CSBCTTTSSBCSS-----EEEESSSCCEEEHHHHHHHSTTC------SCEECSGGGCSCEECG
T ss_pred eeECcCccCcccC-----CeeeCCCCCcccHHHHHHHHHhC------CCCCCCcccccCcCch
Confidence 3789999999944 7775 899999999999999753 2357999 9997754
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.30 E-value=0.00011 Score=51.03 Aligned_cols=46 Identities=13% Similarity=0.069 Sum_probs=38.8
Q ss_pred CccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
-.|+|+++.+.+ .+.+ .+||+|=++||.+||+... +||+.+.++-.
T Consensus 4 ~~CpIs~~~m~d-----PV~~~~sG~~yer~~I~~~l~~~~--------~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRR-----PVLSPKSRTIFEKSLLEQYVKDTG--------NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSS-----EEEETTTTEEEEHHHHHHHHHHHS--------BCTTTCCBCCG
T ss_pred EEecCCCCCCCC-----CEEeCCCCcEEcHHHHHHHHHhCC--------CCcCCcCCCCh
Confidence 359999999953 7777 8999999999999998642 49999998854
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.29 E-value=0.00012 Score=63.24 Aligned_cols=51 Identities=24% Similarity=0.553 Sum_probs=39.4
Q ss_pred CCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~ 112 (215)
-..|.+|.+-+..|- .. -.|+|.||..|+..|++... ..+||.|++. ||-.
T Consensus 180 i~~C~iC~~iv~~g~--~C--~~C~~~~H~~C~~~~~~~~~------~~~CP~C~~~-W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ--SC--ETCGIRMHLPCVAKYFQSNA------EPRCPHCNDY-WPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCE--EC--SSSCCEECHHHHHHHTTTCS------SCBCTTTCCB-CCSC
T ss_pred CCcCcchhhHHhCCc--cc--CccChHHHHHHHHHHHHhCC------CCCCCCCCCC-CCCC
Confidence 378999999987642 22 24999999999999998753 3469999997 7743
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.75 E-value=0.0013 Score=50.98 Aligned_cols=46 Identities=28% Similarity=0.554 Sum_probs=36.2
Q ss_pred ccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 53 KCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 53 ~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
-|.+|.-++.. -.|| +|+|+|-.+|+..|.++. ...||.|+.+|.-
T Consensus 3 fC~~C~~Pi~i-----ygRmIPCkHvFCydCa~~~~~~~-------~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV-----YGRMIPCKHVFCYDCAILHEKKG-------DKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE-----EEEEETTCCEEEHHHHHHHHHTT-------CCBCTTTCCBCSE
T ss_pred ecCccCCCeEE-----EeeeccccccHHHHHHHHHHhcc-------CCCCcCcCCeeee
Confidence 47888888754 4555 999999999999998653 2359999998853
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.77 E-value=0.027 Score=39.77 Aligned_cols=50 Identities=26% Similarity=0.536 Sum_probs=37.4
Q ss_pred CccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|.||.+ .+ +++. -.|...||..||+..|...|. ....||.|+....|.
T Consensus 13 ~~C~vC~~---~~---~ll~Cd~C~~~~H~~Cl~P~l~~~P~----g~W~C~~C~~~~~p~ 63 (66)
T 2lri_C 13 ARCGVCGD---GT---DVLRCTHCAAAFHWRCHFPAGTSRPG----TGLRCRSCSGDVTPA 63 (66)
T ss_dssp CCCTTTSC---CT---TCEECSSSCCEECHHHHCTTTCCCCS----SSCCCTTTTTCCCCC
T ss_pred CCcCCCCC---CC---eEEECCCCCCceecccCCCccCcCCC----CCEECccccCCCccC
Confidence 67999974 22 3333 379999999999999887654 468899998776553
No 74
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.64 E-value=0.16 Score=33.21 Aligned_cols=47 Identities=23% Similarity=0.588 Sum_probs=32.3
Q ss_pred ccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 53 KCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 53 ~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
.|.||...=+.+ +.+. -.|.-.||..||+.=+...|. ....||.|+.
T Consensus 2 ~C~vC~~~~~~~---~ll~Cd~C~~~~H~~Cl~p~l~~~P~----g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD---KLILCDECNKAFHLFCLRPALYEVPD----GEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS---CCEECTTTCCEECHHHHCTTCCSCCS----SCCSCTTTSC
T ss_pred CCCCCCCCCCCC---CEEECCCCChhhCcccCCCCcCCCCC----CcEECcCccc
Confidence 488888753222 2333 379999999999876655442 3678999965
No 75
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.11 E-value=0.23 Score=34.08 Aligned_cols=46 Identities=26% Similarity=0.552 Sum_probs=33.5
Q ss_pred CCccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 51 PPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
+..|.+|... + +++. -.|.-.||..||+.-+...|. ....||.|.+
T Consensus 11 ~~~C~vC~~~---g---~ll~CD~C~~~fH~~Cl~p~l~~~p~----g~W~C~~C~~ 57 (61)
T 2l5u_A 11 QDYCEVCQQG---G---EIILCDTCPRAYHMVCLDPDMEKAPE----GKWSCPHCEK 57 (61)
T ss_dssp CSSCTTTSCC---S---SEEECSSSSCEEEHHHHCTTCCSCCC----SSCCCTTGGG
T ss_pred CCCCccCCCC---C---cEEECCCCChhhhhhccCCCCCCCCC----CceECccccc
Confidence 4789999863 2 3444 379999999999986655443 4678999965
No 76
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.81 E-value=0.24 Score=33.95 Aligned_cols=48 Identities=23% Similarity=0.510 Sum_probs=33.8
Q ss_pred CCccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 028040 51 PPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I 108 (215)
...|.+|... + +++. -.|.-.||..||+.-|...|. ....||.|....
T Consensus 9 ~~~C~vC~~~---g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~----g~W~C~~C~~~~ 57 (61)
T 1mm2_A 9 MEFCRVCKDG---G---ELLCCDTCPSSYHIHCLNPPLPEIPN----GEWLCPRCTCPA 57 (61)
T ss_dssp CSSCTTTCCC---S---SCBCCSSSCCCBCSSSSSSCCSSCCS----SCCCCTTTTTTC
T ss_pred CCcCCCCCCC---C---CEEEcCCCCHHHcccccCCCcCcCCC----CccCChhhcCch
Confidence 3679999852 2 2333 379999999999976665443 357899997643
No 77
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.35 E-value=0.097 Score=35.21 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=33.0
Q ss_pred CCccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 51 PPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
+..|.+|... + +++. -.|.-.||..||+.-|...|. ....||.|..
T Consensus 9 ~~~C~vC~~~---g---~ll~Cd~C~~~~H~~Cl~ppl~~~p~----g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS---G---QLLMCDTCSRVYHLDCLDPPLKTIPK----GMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS---S---CCEECSSSSCEECSSSSSSCCCSCCC----SSCCCHHHHC
T ss_pred CCCCccCCCC---C---eEEEcCCCCcceECccCCCCcCCCCC----CceEChhhhC
Confidence 4789999874 3 2333 379999999999976665443 3577998854
No 78
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=82.62 E-value=0.97 Score=36.58 Aligned_cols=49 Identities=31% Similarity=0.659 Sum_probs=35.5
Q ss_pred CccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
..|.+|... | +++- =.|.-.||..|++.-+...|. ....||.|+..--|
T Consensus 5 ~~C~~C~~~---g---~ll~Cd~C~~~~H~~C~~p~l~~~p~----~~W~C~~C~~~~~~ 54 (184)
T 3o36_A 5 DWCAVCQNG---G---ELLCCEKCPKVFHLSCHVPTLTNFPS----GEWICTFCRDLSKP 54 (184)
T ss_dssp SSCTTTCCC---S---SCEECSSSSCEECTTTSSSCCSSCCS----SCCCCTTTSCSSSC
T ss_pred CccccCCCC---C---eeeecCCCCcccCccccCCCCCCCCC----CCEECccccCcccc
Confidence 569999843 3 3332 269999999999887776543 45889999986654
No 79
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=81.22 E-value=0.11 Score=39.13 Aligned_cols=34 Identities=24% Similarity=0.581 Sum_probs=24.6
Q ss_pred cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 73 GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 73 ~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
.|...||..|+.-..+.......++.|.||.|+.
T Consensus 80 ~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 80 ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred ecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 6999999999976544333334567899999963
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=79.57 E-value=0.26 Score=36.97 Aligned_cols=80 Identities=29% Similarity=0.539 Sum_probs=44.3
Q ss_pred ccCcccccCCCCceeeeecceeeccCCCCCC-C---ccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCC
Q 028040 21 VCGECICFPEHQICVVRTYSEWVIDGEYDWP-P---KCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTA 95 (215)
Q Consensus 21 VC~~Ci~~~~H~~CvVqsYlqwL~Dsdyd~~-~---~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTa 95 (215)
.|..|-. .=|..|+.-... -+.+ ..|. + .|.+|...-.+ ..++. -.|...||..||+.-|...|.
T Consensus 24 ~C~~C~~-~~H~~Cl~~~~~-~~~~--~~W~C~~C~~C~~C~~~~~~---~~ll~Cd~C~~~yH~~Cl~ppl~~~P~--- 93 (111)
T 2ysm_A 24 FCTTCGQ-HYHGMCLDIAVT-PLKR--AGWQCPECKVCQNCKQSGED---SKMLVCDTCDKGYHTFCLQPVMKSVPT--- 93 (111)
T ss_dssp ECSSSCC-EECTTTTTCCCC-TTTS--TTCCCTTTCCCTTTCCCSCC---TTEEECSSSCCEEEGGGSSSCCSSCCS---
T ss_pred ECCCCCC-CcChHHhCCccc-cccc--cCccCCcCCcccccCccCCC---CCeeECCCCCcHHhHHhcCCccccCCC---
Confidence 4555542 447777653221 1212 2222 2 35566654221 12222 269999999999986665543
Q ss_pred CCCCCCCCCCCCccCC
Q 028040 96 PAGYVCPLCSTTIWPP 111 (215)
Q Consensus 96 p~g~~CP~Cr~~I~P~ 111 (215)
....||.|+.....+
T Consensus 94 -g~W~C~~C~~c~~g~ 108 (111)
T 2ysm_A 94 -NGWKCKNCRICISGP 108 (111)
T ss_dssp -SCCCCHHHHCCSCSC
T ss_pred -CCcCCcCCcCcCCCC
Confidence 467899997655443
No 81
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=79.44 E-value=0.71 Score=34.54 Aligned_cols=49 Identities=22% Similarity=0.491 Sum_probs=32.5
Q ss_pred CCccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 51 PPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
+..|.||.+.=+.. +.+. -.|...||..||+..+...+ .....||.|+.
T Consensus 7 ~~~C~~C~~~g~~~---~ll~C~~C~~~~H~~Cl~~~~~~~~----~~~W~C~~C~~ 56 (111)
T 2ysm_A 7 GANCAVCDSPGDLL---DQFFCTTCGQHYHGMCLDIAVTPLK----RAGWQCPECKV 56 (111)
T ss_dssp CSCBTTTCCCCCTT---TSEECSSSCCEECTTTTTCCCCTTT----STTCCCTTTCC
T ss_pred CCCCcCCCCCCCCc---CCeECCCCCCCcChHHhCCcccccc----ccCccCCcCCc
Confidence 37899998762211 2233 37999999999998764322 14677887753
No 82
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=78.80 E-value=0.45 Score=39.40 Aligned_cols=49 Identities=29% Similarity=0.643 Sum_probs=35.1
Q ss_pred CccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
..|.+|... | +++-= .|.-.||..||+.-+...|. ....||.|+..--+
T Consensus 8 ~~C~~C~~~---g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~----~~W~C~~C~~~~~~ 57 (207)
T 3u5n_A 8 DWCAVCQNG---G---DLLCCEKCPKVFHLTCHVPTLLSFPS----GDWICTFCRDIGKP 57 (207)
T ss_dssp SSBTTTCCC---E---EEEECSSSSCEECTTTSSSCCSSCCS----SCCCCTTTSCSSSC
T ss_pred CCCCCCCCC---C---ceEEcCCCCCccCCccCCCCCCCCCC----CCEEeCceeCcccc
Confidence 679999743 2 22222 69999999999987776543 45789999876543
No 83
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.16 E-value=1.6 Score=32.54 Aligned_cols=60 Identities=22% Similarity=0.445 Sum_probs=35.9
Q ss_pred ecceeeccCCCCCC-CccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 38 TYSEWVIDGEYDWP-PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 38 sYlqwL~Dsdyd~~-~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
.|.+=-.|+++..+ ..| ||....+++ ..+.= .|.--||..|+..=+ ...|..|.||.|+.
T Consensus 14 ~~~~~~edg~~~~d~vrC-iC~~~~~~~---~mi~Cd~C~~w~H~~C~~~~~-----~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 14 LYFQGSEDGSYGTDVTRC-ICGFTHDDG---YMICCDKCSVWQHIDCMGIDR-----QHIPDTYLCERCQP 75 (98)
T ss_dssp -----CTTCCCCCCBCCC-TTSCCSCSS---CEEEBTTTCBEEETTTTTCCT-----TSCCSSBCCTTTSS
T ss_pred ccccCCccCCCCCCCEEe-ECCCccCCC---cEEEcCCCCCcCcCcCCCCCc-----cCCCCCEECCCCcC
Confidence 45555555555433 346 898775443 23332 799999999996422 33456799999963
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=75.26 E-value=2.5 Score=31.84 Aligned_cols=50 Identities=28% Similarity=0.549 Sum_probs=32.0
Q ss_pred CCccccccccccccccCCeee-ecCCCccCHHHHHHH--HhcC-------CCCCCCCCCCCCCCC
Q 028040 51 PPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSH--IKSF-------PPHTAPAGYVCPLCS 105 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~W--l~~~-------p~nTap~g~~CP~Cr 105 (215)
+..|.||..- ..+ +... -.|+-+||..||.+. ++.. .++| -.|..||-|.
T Consensus 15 D~~C~VC~~~-t~~---~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T-~~GWSC~~Ce 74 (89)
T 1wil_A 15 DEMCDVCEVW-TAE---SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHT-ETGWSCHYCD 74 (89)
T ss_dssp SCCCTTTCCC-CSS---CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSS-SSSCCCTTTC
T ss_pred CcccCccccc-ccc---ceeccccccccccHhhcccccccccHHHHHHHHccCC-CCCccccccc
Confidence 3789999743 222 2333 369999999999997 2111 1122 2589999993
No 85
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=75.11 E-value=0.79 Score=34.67 Aligned_cols=48 Identities=17% Similarity=0.503 Sum_probs=31.0
Q ss_pred ccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 53 KCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 53 ~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
.|.+|...=++++ +++. -.|...||..||+.-|...|. ....||.|+.
T Consensus 63 ~C~vC~~~~~~~~--~ll~Cd~C~~~yH~~Cl~p~l~~~P~----~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNAD--NMLFCDSCDRGFHMECCDPPLTRMPK----GMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTC--CCEECTTTCCEECGGGCSSCCSSCCS----SCCCCTTTSC
T ss_pred ccccccCcCCCcc--ceEEcCCCCCeeecccCCCCCCCCCC----CCeECCCCCC
Confidence 4666665421211 2222 269999999999987776543 3578999974
No 86
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=74.89 E-value=0.87 Score=33.99 Aligned_cols=46 Identities=22% Similarity=0.563 Sum_probs=33.6
Q ss_pred CccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTT 107 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~ 107 (215)
..|.+|... | +++. -.|--.||..||+.=|...|. ....||.|...
T Consensus 26 ~~C~vC~~~---g---~LL~CD~C~~~fH~~Cl~PpL~~~P~----g~W~C~~C~~~ 72 (88)
T 1fp0_A 26 TICRVCQKP---G---DLVMCNQCEFCFHLDCHLPALQDVPG----EEWSCSLCHVL 72 (88)
T ss_dssp SCCSSSCSS---S---CCEECTTSSCEECTTSSSTTCCCCCS----SSCCCCSCCCC
T ss_pred CcCcCcCCC---C---CEEECCCCCCceecccCCCCCCCCcC----CCcCCccccCC
Confidence 569999863 3 3333 279999999999887766543 35789999754
No 87
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=74.74 E-value=2.2 Score=34.37 Aligned_cols=45 Identities=13% Similarity=0.391 Sum_probs=31.7
Q ss_pred CccccccccccccccCCeeee-cCCCccCHHHHHHHHhc-------CCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKS-------FPPHTAPAGYVCPLCST 106 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~-------~p~nTap~g~~CP~Cr~ 106 (215)
..|.+|.+. | +.+-- .|--+||..||+.=|.. .+ .....||.|+.
T Consensus 64 d~C~vC~~G---G---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p----~~~W~C~~C~~ 116 (142)
T 2lbm_A 64 EQCRWCAEG---G---NLICCDFCHNAFCKKCILRNLGRKELSTIMDE----NNQWYCYICHP 116 (142)
T ss_dssp CSCSSSCCC---S---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTS----TTCCCCTTTCC
T ss_pred CeecccCCC---C---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccC----CCCCEeecccC
Confidence 789999853 2 34333 79999999999976631 12 14578999964
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=74.58 E-value=1.3 Score=30.96 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=33.8
Q ss_pred CCccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 028040 51 PPKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I 108 (215)
...|.+|...-. ++ ..+.- .|.--||..|+.--+...+ ...|.||.|+..+
T Consensus 18 ~~~C~~C~~~~~-~~--~mi~CD~C~~wfH~~Cv~~~~~~~~----~~~w~C~~C~~~~ 69 (75)
T 2k16_A 18 IWICPGCNKPDD-GS--PMIGCDDCDDWYHWPCVGIMAAPPE----EMQWFCPKCANKI 69 (75)
T ss_dssp EECBTTTTBCCS-SC--CEEECSSSSSEEEHHHHTCSSCCCS----SSCCCCTTTHHHH
T ss_pred CcCCCCCCCCCC-CC--CEEEcCCCCcccccccCCCCccCCC----CCCEEChhccCch
Confidence 356999987742 21 23332 7999999999975443221 1578999997654
No 89
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=72.02 E-value=1.3 Score=29.97 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=34.1
Q ss_pred CccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
..|++|..+..++. ..+. -.|..=||..|+.--.... ..+..|.||.|+.
T Consensus 7 ~~C~~C~~~~~~~~--~mI~Cd~C~~WfH~~Cvgl~~~~~---~~~~~~~C~~C~~ 57 (64)
T 1we9_A 7 GQCGACGESYAADE--FWICCDLCEMWFHGKCVKITPARA---EHIKQYKCPSCSN 57 (64)
T ss_dssp CCCSSSCCCCCSSS--CEEECSSSCCEEETTTTTCCTTGG---GGCSSCCCHHHHT
T ss_pred CCCCCCCCccCCCC--CEEEccCCCCCCCccccCcChhHh---cCCCcEECCCCcC
Confidence 67999999875432 3444 3799999999985432211 0136799999965
No 90
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=71.67 E-value=0.57 Score=31.71 Aligned_cols=47 Identities=26% Similarity=0.637 Sum_probs=33.4
Q ss_pred CccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I 108 (215)
..|.+|... | +.+. -.|.-.||..||+.-+...|. ....||.|....
T Consensus 6 ~~C~vC~~~---g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~----g~W~C~~C~~~~ 53 (60)
T 2puy_A 6 DFCSVCRKS---G---QLLMCDTCSRVYHLDCLDPPLKTIPK----GMWICPRCQDQM 53 (60)
T ss_dssp SSCTTTCCC---S---SCEECSSSSCEECGGGSSSCCSSCCC----SCCCCHHHHHHH
T ss_pred CCCcCCCCC---C---cEEEcCCCCcCEECCcCCCCcCCCCC----CceEChhccChh
Confidence 679999873 3 2333 379999999999976665443 367799995443
No 91
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=71.32 E-value=1.2 Score=33.79 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=23.6
Q ss_pred Ccccccccccc----ccccCCeee-ecCCCccCHHHHHHH
Q 028040 52 PKCCQCQAVLE----EESGSETTR-LGCLHVIHTSCLVSH 86 (215)
Q Consensus 52 ~~C~ICle~L~----~gD~~evvR-L~C~HvFH~~CLd~W 86 (215)
+.|.+|+..-. .|++++.+. -.|+..||..||+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 57899987642 233223333 379999999999865
No 92
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=70.53 E-value=1.2 Score=31.36 Aligned_cols=48 Identities=23% Similarity=0.575 Sum_probs=30.7
Q ss_pred ccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 53 KCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 53 ~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
.|.+|...=..+ +++.- .|...||..||+.=|...|.. ....||.|+.
T Consensus 20 ~C~~C~~~~~~~---~ll~CD~C~~~yH~~Cl~Ppl~~~P~g---~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD---KQLMCDECDMAFHIYCLDPPLSSVPSE---DEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG---GEEECTTTCCEEEGGGSSSCCSSCCSS---SCCCCTTTSC
T ss_pred CCcCCCCcCCCC---CEEEcCCCCCceecccCCCCcCCCCCC---CCcCCcCccC
Confidence 466776542222 23332 699999999999766655431 1567999975
No 93
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.42 E-value=2.8 Score=31.26 Aligned_cols=47 Identities=26% Similarity=0.552 Sum_probs=31.0
Q ss_pred CccccccccccccccCCeeee-c--CC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETTRL-G--CL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~--C~-HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
..| ||.... .+ +.+.= . |. .-||..|+. |...+. ..|.||.|+...-
T Consensus 37 ~yC-iC~~~~-~g---~MI~CD~~dC~~~WfH~~CVg--l~~~p~----g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 37 TYC-LCHQVS-YG---EMIGCDNPDCSIEWFHFACVG--LTTKPR----GKWFCPRCSQESG 87 (91)
T ss_dssp BCS-TTCCBC-CS---CCCCCSCSSCSCCCCCSTTTT--CSSCCC----SSCCCTTTCCCCS
T ss_pred cEE-ECCCCC-CC---CEeEecCCCCCCCCEecccCC--cCcCCC----CCEECcCccCcCC
Confidence 567 998874 23 23332 4 66 689999998 544332 4789999976543
No 94
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=69.91 E-value=4.2 Score=30.56 Aligned_cols=29 Identities=24% Similarity=0.532 Sum_probs=21.9
Q ss_pred CCCCCCCCCCccCCCCCCCCcchHHHHHHHHhhh
Q 028040 98 GYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIML 131 (215)
Q Consensus 98 g~~CP~Cr~~I~P~~~i~d~~S~l~~~Lre~i~q 131 (215)
..+||.|.. .++.|++++++..||..+.+
T Consensus 23 ~LRCpvCqn-----qsI~dSnA~iA~dlR~~Vre 51 (90)
T 2kw0_A 23 ELRCPKCQN-----NSIADSNSMIATDLRQKVYE 51 (90)
T ss_dssp SSBCSCTTS-----CTTTSCCCHHHHHHHHHHHH
T ss_pred cCcCCCCCC-----CchhhcCcHHHHHHHHHHHH
Confidence 467999955 45677788999988876653
No 95
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.61 E-value=1.3 Score=31.83 Aligned_cols=49 Identities=24% Similarity=0.487 Sum_probs=32.2
Q ss_pred CccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
-.|.||...=..+ +++.= .|...||..||+.=|...|.. ....||.|..
T Consensus 27 c~C~vC~~~~~~~---~ll~CD~C~~~yH~~Cl~Ppl~~~P~g---~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPN---MQLLCDECNVAYHIYCLNPPLDKVPEE---EYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCST---TEEECSSSCCEEETTSSSSCCSSCCCS---SCCCCTTTCC
T ss_pred CCCcCcCCcCCCC---CEEEcCCCCccccccccCCCccCCCCC---CCcCCcCccC
Confidence 3588888652222 23332 799999999998766654421 1477999964
No 96
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=69.14 E-value=2 Score=30.87 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=25.5
Q ss_pred CccccccccccccccCCeee-ecCCCccCHHHHHH-HH
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVS-HI 87 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~-Wl 87 (215)
..|.||++.+... .+.. |.|+|.|=..||.. |.
T Consensus 4 ~~C~~C~~~~~~~---av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 4 VLCQFCDQDPAQD---AVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CBCTTCCSSSCCB---CCEEETTTTEEECHHHHHHHSC
T ss_pred CCCcCCCCCCCCC---ceEECCcCChHHhHHHCHHHhc
Confidence 6799999865332 2444 89999999999998 54
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.40 E-value=4.9 Score=30.17 Aligned_cols=50 Identities=26% Similarity=0.452 Sum_probs=29.0
Q ss_pred Ccccccccccc---ccccCCeee-ecCCCccCHHHHHHH---HhcCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLE---EESGSETTR-LGCLHVIHTSCLVSH---IKSFPPHTAPAGYVCPLCS 105 (215)
Q Consensus 52 ~~C~ICle~L~---~gD~~evvR-L~C~HvFH~~CLd~W---l~~~p~nTap~g~~CP~Cr 105 (215)
..|.+|+..=. .|++++.+. -.|+..||..||+.. ....+ .....||.|+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~----~~~W~C~~C~ 62 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVK----ALRWQCIECK 62 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHH----TSCCCCTTTC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhh----ccccccccCC
Confidence 67888876521 122123333 479999999999632 11111 1356688885
No 98
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.14 E-value=4.9 Score=27.55 Aligned_cols=41 Identities=24% Similarity=0.517 Sum_probs=28.3
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
+.|..|.+.+..++ .+++. =+..||.+|+ +|-.|+++|...
T Consensus 16 ~~C~~C~~~I~~~~--~~~~a-~~~~~H~~CF----------------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGD--QNVEY-KGTVWHKDCF----------------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSS--CEEEC-SSCEEETTTC----------------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCc--eEEEE-CccccccccC----------------chhhCCCccCCC
Confidence 68999999987654 33332 3567887663 488898887653
No 99
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=67.71 E-value=1.4 Score=36.28 Aligned_cols=49 Identities=20% Similarity=0.443 Sum_probs=33.7
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
..|.+|... |+ .+.=-.|--.||..|++.=+...|. ....||.|+...-
T Consensus 3 ~~C~~C~~~---g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~----g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 3 TICRVCQKP---GD--LVMCNQCEFCFHLDCHLPALQDVPG----EEWSCSLCHVLPD 51 (189)
T ss_dssp CCBTTTCCC---SS--CCCCTTTCCBCCSTTSTTCCSSCCC----TTCCTTTTSCSCC
T ss_pred CcCccCCCC---Cc--eeECCCCCchhccccCCCCcccCCC----CCCCCcCccCCCC
Confidence 569999843 32 2222379999999999876655443 3567999987643
No 100
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=67.63 E-value=0.72 Score=31.89 Aligned_cols=46 Identities=24% Similarity=0.640 Sum_probs=32.9
Q ss_pred CccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTT 107 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~ 107 (215)
..|.||... + +++. =.|.-.||..||+.-|...|. ....||.|...
T Consensus 9 ~~C~vC~~~---g---~ll~CD~C~~~fH~~Cl~ppl~~~P~----g~W~C~~C~~~ 55 (66)
T 1xwh_A 9 DECAVCRDG---G---ELICCDGCPRAFHLACLSPPLREIPS----GTWRCSSCLQA 55 (66)
T ss_dssp CSBSSSSCC---S---SCEECSSCCCEECTTTSSSCCSSCCS----SCCCCHHHHHT
T ss_pred CCCccCCCC---C---CEEEcCCCChhhcccccCCCcCcCCC----CCeECccccCc
Confidence 679999853 3 2333 379999999999976655443 46789999654
No 101
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=66.25 E-value=3.2 Score=29.27 Aligned_cols=46 Identities=28% Similarity=0.660 Sum_probs=30.5
Q ss_pred CCccccccccccccccCCeeee-c--CC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRL-G--CL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTT 107 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL-~--C~-HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~ 107 (215)
+.-| ||...- .| +.+.= . |. .-||..|+. |...+. ..+.||.|+..
T Consensus 16 ~~~C-~C~~~~-~g---~MI~CD~~~C~~~wfH~~Cvg--l~~~p~----g~w~Cp~C~~~ 65 (71)
T 1wen_A 16 PTYC-LCHQVS-YG---EMIGCDNPDCSIEWFHFACVG--LTTKPR----GKWFCPRCSQE 65 (71)
T ss_dssp CCCS-TTCCCS-CS---SEECCSCSSCSCCCEETTTTT--CSSCCS----SCCCCTTTSSC
T ss_pred CCEE-ECCCCC-CC---CEeEeeCCCCCCccEecccCC--cCcCCC----CCEECCCCCcc
Confidence 3567 898863 23 33332 4 76 799999998 544332 57899999654
No 102
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=65.51 E-value=3.7 Score=29.13 Aligned_cols=56 Identities=23% Similarity=0.525 Sum_probs=35.6
Q ss_pred CCCccccccccccccccCCeee-e--cCCCccCHHHHHHHHhcCCC---CCCCCCCCCCCCCCCccCC
Q 028040 50 WPPKCCQCQAVLEEESGSETTR-L--GCLHVIHTSCLVSHIKSFPP---HTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 50 ~~~~C~ICle~L~~gD~~evvR-L--~C~HvFH~~CLd~Wl~~~p~---nTap~g~~CP~Cr~~I~P~ 111 (215)
+...| ||......+ ..+. = .|..=||..|+.-- ..+. ...+..|.||.|+..-.++
T Consensus 15 ~~~~C-iC~~~~~~g---~MI~CD~~~C~~W~H~~CVgi~--~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 15 IKVRC-VCGNSLETD---SMIQCEDPRCHVWQHVGCVILP--DKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCCC-SSCCCCCCS---CEEECSSTTTCCEEEHHHHSCC--CTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred CCEEe-ECCCcCCCC---CEEEECCccCCccccCEEEccc--cccccccccCCCCEECCCCCcccCCC
Confidence 34678 899884333 3444 2 69999999999532 1111 0235689999998765544
No 103
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=65.47 E-value=2.3 Score=28.80 Aligned_cols=50 Identities=26% Similarity=0.458 Sum_probs=32.7
Q ss_pred CccccccccccccccCCeee-ecCCCccCHHHHHHHHhcC---CCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSF---PPHTAPAGYVCPLCST 106 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~---p~nTap~g~~CP~Cr~ 106 (215)
..|.||.......+ ..++. -.|.-.||..|++.-+... +. ....|+.|..
T Consensus 7 ~~C~vC~~~~~~~~-~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~----~~W~C~~C~~ 60 (66)
T 2yt5_A 7 GVCTICQEEYSEAP-NEMVICDKCGQGYHQLCHTPHIDSSVIDSD----EKWLCRQCVF 60 (66)
T ss_dssp CCBSSSCCCCCBTT-BCEEECSSSCCEEETTTSSSCCCHHHHHSS----CCCCCHHHHH
T ss_pred CCCCCCCCCCCCCC-CCEEECCCCChHHHhhhCCCcccccccCCC----CCEECCCCcC
Confidence 78999998754322 12333 2799999999998754321 21 3567998854
No 104
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=65.15 E-value=7.7 Score=30.67 Aligned_cols=54 Identities=15% Similarity=0.406 Sum_probs=33.6
Q ss_pred eccCC-CCCCCccccccccccccccCCeee-ecCCCccCHHHHHHH-----HhcCCCCCCCCCCCCCCCCC
Q 028040 43 VIDGE-YDWPPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSH-----IKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 43 L~Dsd-yd~~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~W-----l~~~p~nTap~g~~CP~Cr~ 106 (215)
..|.| ++ ..|.+|.+. | +++- =.|-.+||.+||+.- +.... .......|+.|+.
T Consensus 50 ~~d~Dg~~--~~C~vC~dG---G---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~--~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 50 SRDSDGMD--EQCRWCAEG---G---NLICCDFCHNAFCKKCILRNLGRRELSTIM--DENNQWYCYICHP 110 (129)
T ss_dssp CBCTTSCB--SSCTTTCCC---S---EEEECSSSSCEEEHHHHHHHTCHHHHHHHT--CTTSCCCCTTTCC
T ss_pred ccCCCCCC--CcCeecCCC---C---eeEecCCCchhhhHHHhCCCcchhHHHHhc--cCCCCeEcCCcCC
Confidence 34544 45 779999853 2 2222 279999999999975 22210 0124678999943
No 105
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=64.41 E-value=1 Score=32.51 Aligned_cols=47 Identities=23% Similarity=0.615 Sum_probs=30.0
Q ss_pred ccccccccccccccCCeeee--cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 53 KCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 53 ~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
.|.+|...=.. +.+.+ .|...||..||+.-|...|.. ....||.|+.
T Consensus 28 ~C~vC~~~~d~----~~ll~CD~C~~~yH~~Cl~PpL~~~P~g---~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP----DKQLMCDECDMAFHIYCLDPPLSSVPSE---DEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG----GGEEECTTTCCEEETTTSSSCCSSCCSS---SCCCCTTTC-
T ss_pred cCCccCCCCCC----cceeEeCCCCCccCcccCCCcccCCCCC---CceECcCccc
Confidence 46666554222 22333 699999999999887765431 1268999975
No 106
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=64.39 E-value=1.1 Score=37.36 Aligned_cols=54 Identities=19% Similarity=0.492 Sum_probs=34.8
Q ss_pred Ccccccccccccccc-CCeeee-cCCCccCHHHHHHH------HhcCCCCCCCCCCCCCCCCCCc
Q 028040 52 PKCCQCQAVLEEESG-SETTRL-GCLHVIHTSCLVSH------IKSFPPHTAPAGYVCPLCSTTI 108 (215)
Q Consensus 52 ~~C~ICle~L~~gD~-~evvRL-~C~HvFH~~CLd~W------l~~~p~nTap~g~~CP~Cr~~I 108 (215)
..|+||...+.+++. ...+.- .|..-||..|+.-- +...|. ...|.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe---~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPE---SVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHH---HHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCC---CCeeECcCCCCCC
Confidence 569999999987641 113332 69999999998421 111110 0268999998754
No 107
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=63.75 E-value=3.7 Score=25.16 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.2
Q ss_pred cccccceeeeeccCccCcccccCCCCc
Q 028040 7 RKATKLYCFVHKVPVCGECICFPEHQI 33 (215)
Q Consensus 7 rk~T~~fCf~Hrv~VC~~Ci~~~~H~~ 33 (215)
++.-++||-+.+..||..|....+|..
T Consensus 10 ~e~l~lfC~~d~~~iC~~C~~~~~H~~ 36 (42)
T 1fre_A 10 DERLKLYCKDDGTLSCVICRDSLKHAS 36 (42)
T ss_dssp CSSCCCCCCSSSSSSCCTTSSCSSCTT
T ss_pred CCeeeEEeCCCCeEEeccCCCCCCCCC
Confidence 567789999999999999986567743
No 108
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=61.98 E-value=6.3 Score=29.62 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=31.5
Q ss_pred CCccccccccccccccCCeeee--cCCCccCHHHHHHHHhcCCCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKSFPPH 93 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~Wl~~~p~n 93 (215)
.-.|.+|.+.|++.- -|.- .=+|.|-..|-...++++..+
T Consensus 15 ~l~CtlC~erLEdtH---FVQCPsv~~HkFCFpCsr~sIk~q~~~ 56 (93)
T 2cs3_A 15 PLCCTICHERLEDTH---FVQCPSVPSHKFCFPCSRESIKAQGAT 56 (93)
T ss_dssp SCCCSSSCSCCSSTT---SEECSSCSSCEECHHHHHHHHHHHHSS
T ss_pred eeEeecchhhhccCc---eeeCCCccCCeeeccccHHHHHhcCCC
Confidence 367999999998753 5554 358999999999999987544
No 109
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=61.09 E-value=1.2 Score=35.46 Aligned_cols=50 Identities=24% Similarity=0.436 Sum_probs=32.2
Q ss_pred CccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTT 107 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~ 107 (215)
..| +|.....++. ..+.= .|.-.||..|+.--.... ..+..|.||.|+..
T Consensus 9 ~~C-~C~~~~~~~~--~mi~Cd~C~~WfH~~Cv~~~~~~~---~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 9 LYC-ICKTPEDESK--FYIGCDRCQNWYHGRCVGILQSEA---ELIDEYVCPQCQST 59 (174)
T ss_dssp EET-TTTEECCTTS--CEEECTTTCCEEEHHHHTCCHHHH---TTCSSCCCHHHHHH
T ss_pred cEe-eCCCCCCCCC--CEeECCCCCchhChhhcCCchhhc---cCccCeecCCCcch
Confidence 668 9998864331 33332 799999999995322110 12357999999764
No 110
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=61.01 E-value=2.8 Score=28.54 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=13.6
Q ss_pred ccccccccccccccCCeeeecCCCccCHHH
Q 028040 53 KCCQCQAVLEEESGSETTRLGCLHVIHTSC 82 (215)
Q Consensus 53 ~C~ICle~L~~gD~~evvRL~C~HvFH~~C 82 (215)
.|+.|.+.+..++ .+..+ +..||.+|
T Consensus 2 ~C~~C~~~I~~~~--~v~a~--~~~~H~~C 27 (76)
T 1iml_A 2 KCPKCDKEVYFAE--RVTSL--GKDWHRPC 27 (76)
T ss_dssp BCTTTSSBCCGGG--EEEET--TEEEETTT
T ss_pred cCCCCCCEEECce--EEEEC--CccccCCC
Confidence 4666766665442 22222 55666554
No 111
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.61 E-value=5.8 Score=28.02 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=34.5
Q ss_pred CccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
..| ||..+.+.+. .-+. -.|..=||..|+.--.... ..+..|.||.|+..--|
T Consensus 13 ~~C-~C~~~~d~~~--~MIqCd~C~~WfH~~Cvgl~~~~~---~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 13 VYC-LCRQPYNVNH--FMIECGLCQDWFHGSCVGIEEENA---VDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCS-TTSCSCCSSS--CEEEBTTTCCEEEHHHHTCCHHHH---TTCSBBCCTTTTTTSCS
T ss_pred cEE-EcCCccCCCC--ceEEcCCCCCcEEeeecCcccccc---cCCCeEECCCcccccCC
Confidence 455 9988875332 3444 3799999999996432221 11357999999876554
No 112
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=59.77 E-value=0.58 Score=32.54 Aligned_cols=50 Identities=20% Similarity=0.505 Sum_probs=30.7
Q ss_pred CccccccccccccccCCeeee---cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRL---GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCS 105 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL---~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr 105 (215)
-.| ||......| ..+.- .|.-=||..|+.---........|..|.||.||
T Consensus 11 v~C-~C~~~~~~g---~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 11 VRC-ICSSTMVND---SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp ECC-TTCCCSCCS---CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred EEe-ECCCCcCCC---CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence 457 797765554 35554 399999999984211111111234579999996
No 113
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=58.95 E-value=8 Score=26.11 Aligned_cols=40 Identities=23% Similarity=0.487 Sum_probs=27.9
Q ss_pred Cccccccccccc---cccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEE---ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~---gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
+.|+.|.+.+.. +. +.++. =+..||.+| |+|-.|+++|..
T Consensus 16 ~~C~~C~~~I~~~g~~~--~~~~a-~~~~~H~~C----------------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGS--SVVAY-EGQSWHDYC----------------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCC--CEEEE-TTEEEETTT----------------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCc--eeEEE-CcceeCccc----------------CEehhcCCCCCC
Confidence 789999999875 22 33332 256788766 359999998864
No 114
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=57.77 E-value=7.1 Score=28.82 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=21.4
Q ss_pred CCCCCCCCCCccCCCCCCCCcchHHHHHHHHhhh
Q 028040 98 GYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIML 131 (215)
Q Consensus 98 g~~CP~Cr~~I~P~~~i~d~~S~l~~~Lre~i~q 131 (215)
..+||.|.. .++.|++++++..||..+.+
T Consensus 26 ~LRCp~Cqn-----qsi~dSna~iA~dlR~~V~~ 54 (84)
T 2hl7_A 26 ELRCPKCQN-----QDIADSNAPIAADLRKQIYG 54 (84)
T ss_dssp HEECTTSSS-----CBTTTCCSHHHHHHHHHHHH
T ss_pred cCcCCCCCC-----CchhhcCcHHHHHHHHHHHH
Confidence 356999955 45667788999998876653
No 115
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.42 E-value=8 Score=25.68 Aligned_cols=40 Identities=18% Similarity=0.418 Sum_probs=27.8
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
+.|..|.+.+..++ ++++ .=+..||.+|+ +|-.|+++|..
T Consensus 6 ~~C~~C~~~I~~~~--~~~~-a~~~~~H~~CF----------------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGS--RKLE-YGGQTWHEHCF----------------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSS--CEEC-STTCCEETTTC----------------BCTTTCCBTTT
T ss_pred CCCccCCCccccCc--cEEE-ECccccCcccC----------------eECCCCCcCCC
Confidence 78999999987643 3333 23567887663 48889888754
No 116
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=56.68 E-value=1.8 Score=27.09 Aligned_cols=13 Identities=31% Similarity=1.096 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCcc
Q 028040 97 AGYVCPLCSTTIW 109 (215)
Q Consensus 97 ~g~~CP~Cr~~I~ 109 (215)
.||.||+|++.+-
T Consensus 4 EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 4 EGFICPQCMKSLG 16 (34)
T ss_dssp EEEECTTTCCEES
T ss_pred cccCCcHHHHHcC
Confidence 4799999998775
No 117
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=55.95 E-value=0.82 Score=31.98 Aligned_cols=54 Identities=22% Similarity=0.521 Sum_probs=35.4
Q ss_pred CCCccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 50 WPPKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 50 ~~~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
+...| +|.....+++ ..+.= .|..=||..|+.--... ..+..|.||.|+..--|
T Consensus 15 ~~~~C-~C~~~~~~g~--~mI~Cd~C~~W~H~~Cvg~~~~~----~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGE--RMLACDGCGVWHHTRCIGINNAD----ALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SEECC-TTCCCSCCSS--CEEECSSSCEEEETTTTTCCTTS----CCCSCCCCHHHHHHCSS
T ss_pred cceEe-eCCCccCCCC--cEEECCCCCCccCCeeeccCccc----cCCCcEECCCccCCCCC
Confidence 34678 7988764442 33442 79999999998643211 23578999999765544
No 118
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=54.48 E-value=3.4 Score=28.89 Aligned_cols=46 Identities=24% Similarity=0.494 Sum_probs=31.8
Q ss_pred CccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
..| ||..+.. ++ ..+. -.|..=||..|+.--. ..+|..|.||.|+.
T Consensus 20 ~~C-iC~~~~~-~~--~MIqCd~C~~WfH~~Cvgi~~-----~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 20 VTC-FCMKPFA-GR--PMIECNECHTWIHLSCAKIRK-----SNVPEVFVCQKCRD 66 (68)
T ss_dssp CCS-TTCCCCT-TC--CEEECTTTCCEEETTTTTCCT-----TSCCSSCCCHHHHT
T ss_pred eEe-ECCCcCC-CC--CEEECCCCCccccccccCcCc-----ccCCCcEECCCCCC
Confidence 567 9988754 21 3444 3799999999996322 23467899999965
No 119
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.43 E-value=12 Score=25.62 Aligned_cols=39 Identities=21% Similarity=0.545 Sum_probs=25.7
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
+.|..|.+.+..++ .+++. =+..||.+| |+|-.|+++|.
T Consensus 16 ~~C~~C~~~I~~~~--~~~~a-~~~~~H~~C----------------F~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDS--RELFY-EDRHFHEGC----------------FRCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSC--CBCCC-SSCCCBTTT----------------SBCTTTCCBCS
T ss_pred CcCccCCCccccCc--EEEEe-CCccccccC----------------CeecCCCCccC
Confidence 67999999987432 33332 256777665 34888888775
No 120
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.37 E-value=1.6 Score=32.27 Aligned_cols=48 Identities=25% Similarity=0.494 Sum_probs=32.7
Q ss_pred CccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
..|.||...=..+ .++. =.|...||..||+.=|...|. ....||.|..
T Consensus 17 ~~C~vC~~~~~~~---~ll~CD~C~~~~H~~Cl~Ppl~~~P~----g~W~C~~C~~ 65 (92)
T 2e6r_A 17 YICQVCSRGDEDD---KLLFCDGCDDNYHIFCLLPPLPEIPR----GIWRCPKCIL 65 (92)
T ss_dssp CCCSSSCCSGGGG---GCEECTTTCCEECSSSSSSCCSSCCS----SCCCCHHHHH
T ss_pred CCCccCCCcCCCC---CEEEcCCCCchhccccCCCCcccCCC----CCcCCccCcC
Confidence 5699998763222 2222 279999999999866655443 3577999954
No 121
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.03 E-value=1.5 Score=31.99 Aligned_cols=50 Identities=16% Similarity=0.453 Sum_probs=32.9
Q ss_pred CccccccccccccccCCeeee--cCCCccCHHHHHHHHhc----CCCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKS----FPPHTAPAGYVCPLCSTT 107 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~Wl~~----~p~nTap~g~~CP~Cr~~ 107 (215)
..|.||...=...+ ..+.+ .|...||..|++.=|.. .+. ....|+.|...
T Consensus 17 ~~C~vC~~~~~~~~--~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~----g~W~C~~C~~~ 72 (88)
T 1wev_A 17 LACVVCRQMTVASG--NQLVECQECHNLYHQDCHKPQVTDKEVNDPR----LVWYCARCTRQ 72 (88)
T ss_dssp CSCSSSCCCCCCTT--CCEEECSSSCCEEETTTSSSCCCHHHHHCTT----CCCCCHHHHHH
T ss_pred CcCCCCCCCCCCCC--CceEECCCCCCeEcCccCCCcccccccCCCC----CCeeCccccch
Confidence 67999997633221 23333 69999999999876653 222 35679999543
No 122
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=52.73 E-value=6.4 Score=30.05 Aligned_cols=44 Identities=25% Similarity=0.492 Sum_probs=28.9
Q ss_pred CCCccccccccccccccCCeeee---cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 028040 50 WPPKCCQCQAVLEEESGSETTRL---GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCS 105 (215)
Q Consensus 50 ~~~~C~ICle~L~~gD~~evvRL---~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr 105 (215)
.+..|.+|.. .| +.+.= .|--.||..||. |...|. ....||.|.
T Consensus 14 ~~~~C~~C~~---~G---~ll~CD~~~Cp~~fH~~Cl~--L~~~P~----g~W~Cp~c~ 60 (107)
T 4gne_A 14 HEDYCFQCGD---GG---ELVMCDKKDCPKAYHLLCLN--LTQPPY----GKWECPWHQ 60 (107)
T ss_dssp SCSSCTTTCC---CS---EEEECCSTTCCCEECTGGGT--CSSCCS----SCCCCGGGB
T ss_pred CCCCCCcCCC---CC---cEeEECCCCCCcccccccCc--CCcCCC----CCEECCCCC
Confidence 3467999983 23 34442 488999999998 555432 346688664
No 123
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=51.77 E-value=14 Score=26.92 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=32.5
Q ss_pred CCCccccccccccccccCCeeee-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 028040 50 WPPKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (215)
Q Consensus 50 ~~~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I 108 (215)
.+..|.||...-...+ .+++.= .|.-.||..|+..-+ .|. ....||.|....
T Consensus 24 ~~~~C~vC~~~~s~~~-~~ll~CD~C~~~fH~~Cl~p~~--vP~----g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGVPY--IPE----GQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSE-EEEEECSSSCCCCCHHHHTCSS--CCS----SCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCC-CCEEECCCCCchhhcccCCCCc--cCC----CceECccccCcc
Confidence 3478999987632211 123222 699999999998532 222 356799996543
No 124
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.30 E-value=12 Score=25.58 Aligned_cols=38 Identities=18% Similarity=0.398 Sum_probs=24.3
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
+.|+.|.+.+. +. .+..+ +..||.+| |+|-.|+++|..
T Consensus 16 ~~C~~C~~~I~-~~--~~~a~--~~~~H~~C----------------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GP--FMVAG--EFKYHPEC----------------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SC--CBCCT--TCCBCTTS----------------CBCTTTCCBCCT
T ss_pred CcCccCCCCcC-ce--EEEEC--Cceecccc----------------CCccCCCCccCC
Confidence 67888888886 21 22222 56677655 358888888754
No 125
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=50.40 E-value=2.1 Score=29.53 Aligned_cols=44 Identities=27% Similarity=0.596 Sum_probs=28.9
Q ss_pred CccccccccccccccCCeeee-c--CC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRL-G--CL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~--C~-HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
.-| +|.+.- .| +.+.= . |. .-||..|+. |...+ ...+.||.|+.
T Consensus 12 ~yC-~C~~~~-~g---~MI~CD~c~C~~~WfH~~Cvg--l~~~p----~~~w~Cp~C~~ 59 (62)
T 2g6q_A 12 TYC-LCNQVS-YG---EMIGCDNEQCPIEWFHFSCVS--LTYKP----KGKWYCPKCRG 59 (62)
T ss_dssp EET-TTTEEC-CS---EEEECSCTTCSSCEEETGGGT--CSSCC----SSCCCCHHHHT
T ss_pred cEE-ECCCCC-CC---CeeeeeCCCCCcccEecccCC--cCcCC----CCCEECcCccc
Confidence 556 898862 23 23332 5 65 899999998 44332 24788999964
No 126
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.43 E-value=8 Score=26.17 Aligned_cols=39 Identities=26% Similarity=0.482 Sum_probs=27.8
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
+.|..|.+.+..++ .+. .=+..||.+| |+|-.|+++|..
T Consensus 10 ~~C~~C~~~I~~~~---~v~-a~~~~~H~~C----------------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 10 SKCPKCDKTVYFAE---KVS-SLGKDWHKFC----------------LKCERCSKTLTP 48 (76)
T ss_dssp CBCTTTCCBCCTTT---EEE-ETTEEEETTT----------------CBCSSSCCBCCT
T ss_pred CCCcCCCCEeECCe---EEE-ECCeEeeCCC----------------CCCCCCCCccCC
Confidence 78999999987653 332 2356778766 359999988864
No 127
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=48.06 E-value=3.8 Score=35.34 Aligned_cols=49 Identities=22% Similarity=0.525 Sum_probs=28.4
Q ss_pred CccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
-.|.+|...=..+ ..+- =.|...||..||+.=|...|.. ....||.|..
T Consensus 175 c~C~vC~~~~~~~---~lL~CD~C~~~yH~~CL~PPL~~vP~G---~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPD---KQLMCDECDMAFHIYCLDPPLSSVPSE---DEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC-----CCEECSSSCCEECSCC--CCCCSCCSS---SCCCCGGGC-
T ss_pred CCCcCCCCCCCCC---CeEEcCCCCcceeCccCCCCcccCCCC---CCCCCcCCcC
Confidence 4588887642222 2222 2699999999999766654421 1367999965
No 128
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=47.82 E-value=2.3 Score=28.95 Aligned_cols=44 Identities=27% Similarity=0.634 Sum_probs=28.8
Q ss_pred CccccccccccccccCCeeee-c--CC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRL-G--CL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~--C~-HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
.-| ||...- .| +.+.- . |. .-||..|+. |...|. ..+.||.|+.
T Consensus 11 ~~C-~C~~~~-~g---~mi~CD~cdC~~~wfH~~Cvg--l~~~p~----g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVS-YG---EMIGCDNPDCSIEWFHFACVG--LTTKPR----GKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEEC-CS---EEEECSCTTCSSCEEETGGGT--CSSCCS----SCCCCHHHHC
T ss_pred CEE-ECCCcC-CC---CEEEeCCCCCCCceEehhcCC--CCcCCC----CCEECcCccC
Confidence 556 898863 22 23332 4 65 789999998 554432 5688999954
No 129
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=47.81 E-value=4.5 Score=26.07 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=23.2
Q ss_pred cccccceeeeeccCccCcccccCCCCcee
Q 028040 7 RKATKLYCFVHKVPVCGECICFPEHQICV 35 (215)
Q Consensus 7 rk~T~~fCf~Hrv~VC~~Ci~~~~H~~Cv 35 (215)
++.-++||-+.+..||..|....+|..-.
T Consensus 15 ~e~l~lfC~~d~~~iC~~C~~~~~H~~H~ 43 (53)
T 2did_A 15 HEALSLFCYEDQEAVCLICAISHTHRAHT 43 (53)
T ss_dssp CCBCCEEESSSCSEECHHHHTSSTTTTSC
T ss_pred CCeeeEEeCCCCeEEeccccCCCCCCCCc
Confidence 56778999999999999998656775443
No 130
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=47.01 E-value=18 Score=25.33 Aligned_cols=48 Identities=19% Similarity=0.461 Sum_probs=30.5
Q ss_pred CCccccccccccccccCCeeee--cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
...|.||...-...+ +.+.+ .|.-.||..|+..-. .|. ....||.|+.
T Consensus 16 ~~~C~vC~~~~s~~~--~~ll~CD~C~~~~H~~Cl~~~~--vP~----g~W~C~~C~~ 65 (71)
T 2ku3_A 16 DAVCSICMDGESQNS--NVILFCDMCNLAVHQECYGVPY--IPE----GQWLCRHCLQ 65 (71)
T ss_dssp SCSCSSSCCCCCCSS--SCEEECSSSCCEEEHHHHTCSS--CCS----SCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCC--CCEEECCCCCCccccccCCCCc--CCC----CCcCCccCcC
Confidence 477999987632221 23333 799999999997532 221 3567888843
No 131
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.60 E-value=9.9 Score=26.42 Aligned_cols=39 Identities=26% Similarity=0.635 Sum_probs=27.6
Q ss_pred CCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
.+.|..|.+.+..++ .+..+ +..||.+| |+|-.|+++|.
T Consensus 15 ~~~C~~C~~~I~~~~--~v~a~--~~~wH~~C----------------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQ--SLLAL--DKQWHVSC----------------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSC--CEEET--TEEECTTT----------------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCe--EEEEC--Cccccccc----------------CCcCcCCCCcC
Confidence 368999999987653 33333 56778766 35999988875
No 132
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.74 E-value=12 Score=25.10 Aligned_cols=46 Identities=15% Similarity=0.389 Sum_probs=29.9
Q ss_pred cCCCCCCCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 45 DGEYDWPPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 45 Dsdyd~~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
+.-+. ..|+.|.+.+..++ .+++. =+..||.+| |+|-.|+++|...
T Consensus 7 ~~~~~--~~C~~C~~~I~~~~--~~~~a-~~~~~H~~C----------------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 7 NALAS--ATCERCKGGFAPAE--KIVNS-NGELYHEQC----------------FVCAQCFQQFPEG 52 (77)
T ss_dssp SCCCC--CBCSSSCCBCCSTT--TCEEE-TTEEECTTT----------------CCCTTTCCCCGGG
T ss_pred cCCCC--CCchhcCCccCCCc--eEEEe-CccEecccc----------------CeECCCCCCCCCC
Confidence 33344 78999999987543 33332 255777766 3488898887653
No 133
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=45.59 E-value=6.3 Score=23.36 Aligned_cols=28 Identities=18% Similarity=0.565 Sum_probs=19.7
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHH
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCL 83 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CL 83 (215)
+.|+.|.+..-..+ .+.. =+.+||+.|+
T Consensus 4 ~~C~~C~k~Vy~~E--k~~~--~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTE--KVNC--LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGG--CCCS--SSSCCCGGGC
T ss_pred CcCCccCCEEecce--eEEE--CCeEecccCC
Confidence 67999998876543 2332 3689999884
No 134
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=45.57 E-value=10 Score=28.25 Aligned_cols=40 Identities=23% Similarity=0.474 Sum_probs=27.7
Q ss_pred ccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 53 KCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 53 ~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
.|..|.+.+...+ .+++. =+.+||.+|+ +|-.|+++|.+.
T Consensus 10 ~C~~C~~~I~~~e--~~~~a-~~~~~H~~CF----------------~C~~C~~~L~~g 49 (123)
T 2l3k_A 10 LCASCDKRIRAYE--MTMRV-KDKVYHLECF----------------KCAACQKHFSVG 49 (123)
T ss_dssp CCSSSSCCCCTTC--CCCCC-SSCCCCTTTC----------------BCTTTCCBCCTT
T ss_pred cccCCCCeecCCc--eEEEE-CCcccccccC----------------ccccCCCCCCCC
Confidence 7999999987643 33332 2678887763 488999888543
No 135
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=45.28 E-value=1.7 Score=33.00 Aligned_cols=47 Identities=21% Similarity=0.479 Sum_probs=30.5
Q ss_pred ccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 53 KCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 53 ~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
.|.||...-..+ +++. -.|...||..||+.=|...|. ....||.|..
T Consensus 60 ~C~~C~~~~~~~---~ll~Cd~C~~~yH~~Cl~ppl~~~P~----g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSENDD---QLLFCDDCDRGYHMYCLNPPVAEPPE----GSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCTTTT---TEEECSSSCCEEETTTSSSCCSSCCS----SCCCCHHHHH
T ss_pred ccCcccccCCCC---ceEEcCCCCccccccccCCCccCCCC----CCeECccccc
Confidence 477776653222 2333 279999999999976655443 3567888843
No 136
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=45.14 E-value=11 Score=26.16 Aligned_cols=48 Identities=17% Similarity=0.404 Sum_probs=32.1
Q ss_pred CccccccccccccccCCeee-e-cCCCccCHHHHHHH------HhcCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTR-L-GCLHVIHTSCLVSH------IKSFPPHTAPAGYVCPLCS 105 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L-~C~HvFH~~CLd~W------l~~~p~nTap~g~~CP~Cr 105 (215)
..|.+|..++..++ .-+. - .|.--||..|+.-= |...+. ..|.||.|.
T Consensus 9 ~~C~~C~~p~~~~~--~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~----~~w~C~~C~ 64 (65)
T 2vpb_A 9 YPCGICTNEVNDDQ--DAILCEASCQKWFHRICTGMTETAYGLLTAEAS----AVWGCDTCM 64 (65)
T ss_dssp CBCTTTCSBCCTTS--CEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTT----EEECCHHHH
T ss_pred CcCccCCCccCCCC--CeEecccCccccCchhccCCCHHHHHHhhccCC----CcEECcCcc
Confidence 57999999986653 3444 3 79999999998322 221111 367788885
No 137
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.73 E-value=18 Score=23.98 Aligned_cols=39 Identities=21% Similarity=0.553 Sum_probs=23.6
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
+.|..|.+.+...+ ..++ .=+..||.+| |+|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~~~--~~~~-a~~~~~H~~C----------------F~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDG--AGVV-ALDRVFHVGC----------------FVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSS--CCEE-CSSSEECTTT----------------CBCSSSCCBCT
T ss_pred CCCccCCCccCCCc--eEEE-ECCCeEcccC----------------CcccccCCcCC
Confidence 67888888776532 2222 2246677665 24788887773
No 138
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.07 E-value=19 Score=23.89 Aligned_cols=40 Identities=18% Similarity=0.469 Sum_probs=27.4
Q ss_pred Cccccccccccc-cccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEE-ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~-gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
..|..|.+.+.. ++ +.+++. -+..||.+|+ +|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~~~~-~~~~~a-~~~~wH~~CF----------------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGG-TKYISF-EERQWHNDCF----------------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSS-CSCEEC-SSCEECTTTC----------------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCC-cceEEE-CCcccCcccC----------------EeccCCCcCC
Confidence 689999999875 12 134332 4678887763 4889988875
No 139
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=42.42 E-value=8.1 Score=25.54 Aligned_cols=29 Identities=34% Similarity=0.892 Sum_probs=23.1
Q ss_pred ccccceeeeeccCccCcccccCCCCceee
Q 028040 8 KATKLYCFVHKVPVCGECICFPEHQICVV 36 (215)
Q Consensus 8 k~T~~fCf~Hrv~VC~~Ci~~~~H~~CvV 36 (215)
+.-++||-.-+..||..|....+|..-.+
T Consensus 17 e~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 45 (64)
T 2d8u_A 17 EKINIYCLTCEVPTCSMCKVFGIHKACEV 45 (64)
T ss_dssp CCCCSEESSSCCCCCSHHHHSSSTTSSCE
T ss_pred CccceEcCcCCceeCccccCCCcCCCCCe
Confidence 46789999999999999986567765444
No 140
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=42.17 E-value=4.7 Score=25.52 Aligned_cols=28 Identities=32% Similarity=0.884 Sum_probs=22.3
Q ss_pred ccccceeeeeccCccCcccccCCCCcee
Q 028040 8 KATKLYCFVHKVPVCGECICFPEHQICV 35 (215)
Q Consensus 8 k~T~~fCf~Hrv~VC~~Ci~~~~H~~Cv 35 (215)
+..++||-+-+..+|..|....+|..-.
T Consensus 15 e~l~lfC~~d~~~iC~~C~~~~~H~~H~ 42 (48)
T 3ddt_A 15 EKINIYCLTCEVPTCSMCKVFGIHKACE 42 (48)
T ss_dssp SBCCEEETTTTEEECHHHHHHSTTTTSC
T ss_pred ccccEEcCCCCeeEcccccCCCcCCCCc
Confidence 5688999999999999997556675433
No 141
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=42.16 E-value=19 Score=33.13 Aligned_cols=50 Identities=14% Similarity=0.404 Sum_probs=35.2
Q ss_pred CccccccccccccccCCeee-ecCCCc--cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHV--IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~Hv--FH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~ 112 (215)
-.|++=...|.. .+| ..|.|+ |-.+=+-.+.++. ....||+|.+.+-+.+
T Consensus 250 L~CPlS~~ri~~-----PvRg~~C~HlQCFDl~sfL~~~~~~------~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMKY-----PSKSINCKHLQCFDALWFLHSQLQI------PTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCSS-----EEEETTCCSSCCEEHHHHHHHHHHS------CCCBCTTTCCBCCGGG
T ss_pred ecCCCccccccc-----cCcCCcCCCcceECHHHHHHHhhcC------CceeCCCCCcccCHHH
Confidence 567777777643 566 579998 7776666665553 3578999999887643
No 142
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=41.20 E-value=14 Score=26.30 Aligned_cols=43 Identities=23% Similarity=0.485 Sum_probs=30.8
Q ss_pred ecceeeccCCCCCCCccccccccccccccCCeee---ecCCCccCHHHHHHHH
Q 028040 38 TYSEWVIDGEYDWPPKCCQCQAVLEEESGSETTR---LGCLHVIHTSCLVSHI 87 (215)
Q Consensus 38 sYlqwL~Dsdyd~~~~C~ICle~L~~gD~~evvR---L~C~HvFH~~CLd~Wl 87 (215)
+-..|+.|.+- ..|.+|...|.-- ..| -.||++|=..|....+
T Consensus 11 ~~~~W~pd~~~---~~C~~C~~~Fs~~----~RrHHCR~CG~v~C~~Cs~~~~ 56 (84)
T 1z2q_A 11 SKGYWQEDEDA---PACNGCGCVFTTT----VRRHHCRNCGYVLCGDCSRHRA 56 (84)
T ss_dssp CCSCCCCTTTC---CBCTTTCCBCCTT----SCCEECTTTCCEECTGGGCCEE
T ss_pred CCCccccCCCC---CCCcCcCCccccc----hhcccccCCCcEEChHHhCCeE
Confidence 34579988764 4899999998542 222 3699999999876553
No 143
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.85 E-value=27 Score=23.53 Aligned_cols=37 Identities=30% Similarity=0.645 Sum_probs=24.3
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
+.|..|.+.+.. +.++ .=+..||.+|+ +|-.|+++|.
T Consensus 16 ~~C~~C~~~I~~----~~v~-a~~~~~H~~CF----------------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQ----GGVT-YRDQPWHRECL----------------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCS----CCEE-SSSSEECTTTC----------------BCSSSCCBCT
T ss_pred CcCCCCCCEecC----cEEE-ECCchhhhhhC----------------CcccCCCcCC
Confidence 678888888753 2222 33567776653 4888888874
No 144
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=39.78 E-value=3.3 Score=27.17 Aligned_cols=47 Identities=19% Similarity=0.425 Sum_probs=29.8
Q ss_pred ccccccccccccccCCeee-e-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 028040 53 KCCQCQAVLEEESGSETTR-L-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCS 105 (215)
Q Consensus 53 ~C~ICle~L~~gD~~evvR-L-~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr 105 (215)
.|.+|..+..+++ .-+. - .|.-=||..|+.--.... .+..|.||.|+
T Consensus 4 ~cc~C~~p~~~~~--~mI~Cd~~C~~WfH~~Cvgl~~~~~----~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKV--DWVQCDGGCDEWFHQVCVGVSPEMA----ENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTC--CEEECTTTTCCEEETTTTTCCHHHH----HHSCCCCSCC-
T ss_pred cCCCCcCccCCCC--cEEEeCCCCCccCcccccCCCcccc----CCCCEECCCCC
Confidence 4788888875442 3444 2 588899999986432211 01468899995
No 145
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.67 E-value=19 Score=24.95 Aligned_cols=40 Identities=30% Similarity=0.630 Sum_probs=27.1
Q ss_pred CCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
...|..|.+.+..++ .+. .=+.+||.+|+ +|-.|+++|..
T Consensus 15 ~~~C~~C~~~I~~~e--~v~--a~~~~wH~~CF----------------~C~~C~~~L~~ 54 (82)
T 2co8_A 15 GDLCALCGEHLYVLE--RLC--VNGHFFHRSCF----------------RCHTCEATLWP 54 (82)
T ss_dssp SCBCSSSCCBCCTTT--BCC--BTTBCCBTTTC----------------BCSSSCCBCCT
T ss_pred CCCCcccCCCcccce--EEE--ECCCeeCCCcC----------------EEcCCCCCcCC
Confidence 368999999886543 232 23567887773 48888887754
No 146
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=38.16 E-value=7.9 Score=23.18 Aligned_cols=12 Identities=25% Similarity=0.897 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCc
Q 028040 97 AGYVCPLCSTTI 108 (215)
Q Consensus 97 ~g~~CP~Cr~~I 108 (215)
+.|.||+|+..+
T Consensus 2 ~k~~CpvCk~q~ 13 (28)
T 2jvx_A 2 SDFCCPKCQYQA 13 (28)
T ss_dssp CCEECTTSSCEE
T ss_pred CcccCccccccC
Confidence 457899998755
No 147
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=37.55 E-value=27 Score=31.97 Aligned_cols=50 Identities=16% Similarity=0.356 Sum_probs=35.9
Q ss_pred CccccccccccccccCCeee-ecCCCc--cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHV--IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~Hv--FH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~ 112 (215)
-.|++=...+.. .+| ..|.|+ |-.+=+-.+.++. ...+||+|.+.+-+.+
T Consensus 216 L~CPlS~~ri~~-----P~Rg~~C~HlqCFDl~sfL~~~~~~------~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 216 LMCPLGKMRLTI-----PCRAVTCTHLQCFDAALYLQMNEKK------PTWICPVCDKKAAYES 268 (360)
T ss_dssp SBCTTTCSBCSS-----EEEETTCCCCCCEEHHHHHHHHHHS------CCCBCTTTCSBCCGGG
T ss_pred eeCCCccceecc-----CCcCCCCCCCccCCHHHHHHHHhhC------CCeECCCCCcccCHHH
Confidence 457777777633 566 479998 8877777766654 2578999999887754
No 148
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.42 E-value=19 Score=24.28 Aligned_cols=40 Identities=18% Similarity=0.393 Sum_probs=26.5
Q ss_pred Cccccccccccc-cccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEE-ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~-gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
+.|+.|.+.+.. ++ .+.++ .-+..||.+|+ +|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~~g~-~~~~~-a~~~~wH~~CF----------------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTG-AKFIC-FQDSQWHSECF----------------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTT-CCEEE-ETTEEEEGGGC----------------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCC-ceeEE-ECCcccCcccC----------------ChhhCCCcCC
Confidence 789999998875 12 13333 23567888773 4888888775
No 149
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=37.23 E-value=17 Score=25.79 Aligned_cols=41 Identities=22% Similarity=0.603 Sum_probs=26.7
Q ss_pred ceeeccCCCCCCCccccccccccccccCCeee---ecCCCccCHHHHHHHH
Q 028040 40 SEWVIDGEYDWPPKCCQCQAVLEEESGSETTR---LGCLHVIHTSCLVSHI 87 (215)
Q Consensus 40 lqwL~Dsdyd~~~~C~ICle~L~~gD~~evvR---L~C~HvFH~~CLd~Wl 87 (215)
..|+.|.+- ..|.+|...|.-. ..| -.||.+|=..|....+
T Consensus 11 ~~W~~d~~~---~~C~~C~~~Fs~~----~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 11 HAWLKDDEA---THCRQCEKEFSIS----RRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp ----CCCCC---CBCTTTCCBCBTT----BCCEECTTTCCEECSGGGCEEE
T ss_pred CccccCccC---CcccCcCCcccCc----cccccCCCCCCEEChHHhCCee
Confidence 468887754 4799999999542 222 3699999999987543
No 150
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.99 E-value=7.1 Score=26.03 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=23.0
Q ss_pred cccccceeeeeccCccCcccccCCCCcee
Q 028040 7 RKATKLYCFVHKVPVCGECICFPEHQICV 35 (215)
Q Consensus 7 rk~T~~fCf~Hrv~VC~~Ci~~~~H~~Cv 35 (215)
++.-++||-+.+..||..|....+|..-.
T Consensus 21 ~e~L~lfC~~d~~~iC~~C~~s~eH~~H~ 49 (59)
T 2yrg_A 21 GEKLLLFCQEDGKVICWLCERSQEHRGHH 49 (59)
T ss_dssp CCBCCEEETTTCSEECHHHHTSTTTTTCC
T ss_pred CceeeeecCCCCcEEecccCCCCcCCCCc
Confidence 56788999999999999998656775443
No 151
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.85 E-value=28 Score=24.21 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=26.8
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
+.|..|.+.+. + +.+. .=+..||.+|+ +|-.|+++|..
T Consensus 26 ~~C~~C~~~I~-~---~~v~-a~~~~~H~~CF----------------~C~~C~~~L~~ 63 (90)
T 2dar_A 26 PMCAHCNQVIR-G---PFLV-ALGKSWHPEEF----------------NCAHCKNTMAY 63 (90)
T ss_dssp CBBSSSCCBCC-S---CEEE-ETTEEECTTTC----------------BCSSSCCBCSS
T ss_pred CCCccCCCEec-c---eEEE-ECCccccccCC----------------ccCCCCCCCCC
Confidence 78999999984 2 3333 33678887663 48999988864
No 152
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.13 E-value=19 Score=25.66 Aligned_cols=39 Identities=15% Similarity=0.352 Sum_probs=28.8
Q ss_pred ceeeccCCCCCCCccccccccccccccCCeee----ecCCCccCHHHHHHH
Q 028040 40 SEWVIDGEYDWPPKCCQCQAVLEEESGSETTR----LGCLHVIHTSCLVSH 86 (215)
Q Consensus 40 lqwL~Dsdyd~~~~C~ICle~L~~gD~~evvR----L~C~HvFH~~CLd~W 86 (215)
..|+.|.+- ..|.+|...|.- ..| -.||.+|=..|....
T Consensus 6 ~~W~pd~~~---~~C~~C~~~F~~-----~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 6 SGRYPTNNF---GNCTGCSATFSV-----LKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCSCSCCCC---SSCSSSCCCCCS-----SSCCEECSSSCCEECTTTSCEE
T ss_pred CccccCCCC---CcCcCcCCcccc-----chhhhhhcCCCcEEChhhcCCc
Confidence 469888754 479999999843 333 379999998886654
No 153
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=34.98 E-value=16 Score=26.47 Aligned_cols=44 Identities=25% Similarity=0.483 Sum_probs=29.4
Q ss_pred ceeeccCCCCCCCccccccccccccccCCeeeecCCCccCHHHHHHHH
Q 028040 40 SEWVIDGEYDWPPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHI 87 (215)
Q Consensus 40 lqwL~Dsdyd~~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl 87 (215)
..|+.|.+- ..|.+|...|.--. ..-.--.||++|=..|...++
T Consensus 12 p~W~~d~~~---~~C~~C~~~F~~~~-RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 12 PTWVPDSEA---PNCMNCQVKFTFTK-RRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCCCCGGGC---CBCTTTCCBCCSSS-CCEECTTTCCEECGGGSCEEE
T ss_pred CcCcccccC---CcCcCCCCcccchh-hCccccCCCCEECCcccCCee
Confidence 468877654 47999999985421 011113799999999987664
No 154
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=33.72 E-value=14 Score=26.04 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=20.7
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHH
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCL 83 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CL 83 (215)
+.|..|.+.+..++ .+++. =+..||.+|+
T Consensus 67 ~~C~~C~~~I~~~~--~~~~a-~~~~~H~~CF 95 (101)
T 2cup_A 67 PKCKGCFKAIVAGD--QNVEY-KGTVWHKDCF 95 (101)
T ss_dssp CBCSSSCCBCCSSS--CEEES-SSCEEETTTC
T ss_pred CccccCCCccccCC--eEEEe-CCcchHHhCC
Confidence 79999999998764 34443 3678887663
No 155
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=32.67 E-value=18 Score=25.20 Aligned_cols=52 Identities=25% Similarity=0.414 Sum_probs=32.8
Q ss_pred CccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCC--CCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTA--PAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTa--p~g~~CP~Cr~~I~P 110 (215)
..--||..+...+. ..+. -.|.-=||..|+.--- ..+ ...|.||.|+...-+
T Consensus 10 ~~yCiC~~~~~~~~--~MI~Cd~C~~WfH~~Cvg~~~-----~~~~~~~~~~C~~C~~~~~~ 64 (75)
T 3kqi_A 10 PVYCVCRLPYDVTR--FMIECDACKDWFHGSCVGVEE-----EEAPDIDIYHCPNCEKTHGK 64 (75)
T ss_dssp CEETTTTEECCTTS--CEEECTTTCCEEEHHHHTCCT-----TTGGGBSSCCCHHHHHHHCC
T ss_pred eeEEECCCcCCCCC--CEEEcCCCCCCEecccccccc-----cccCCCCEEECCCCcccCCC
Confidence 44458887764332 3444 3799999999995321 112 157999999765444
No 156
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=32.35 E-value=28 Score=26.58 Aligned_cols=52 Identities=21% Similarity=0.402 Sum_probs=37.6
Q ss_pred eccCCCCCCCccccccccccccccCCeeeecC-CCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 43 VIDGEYDWPPKCCQCQAVLEEESGSETTRLGC-LHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 43 L~Dsdyd~~~~C~ICle~L~~gD~~evvRL~C-~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
+.|..+--+.+|-.|-...+. . ..| -|.+-..||...|... -.||+|.+++-
T Consensus 20 ~~d~s~~G~~nCKsCWf~~k~-----L--V~C~dHYLCl~CLtlmL~~S--------drCpIC~~pLP 72 (99)
T 2ko5_A 20 IPDATHLGPQFCKSCWFENKG-----L--VECNNHYLCLNCLTLLLSVS--------NRCPICKMPLP 72 (99)
T ss_dssp SSSCCCSCCCCCCSSCSCCSS-----E--EECSSCEEEHHHHHHTCSSS--------SEETTTTEECC
T ss_pred cCCccccCcccChhhccccCC-----e--eeecchhhHHHHHHHHHhhc--------cCCcccCCcCC
Confidence 445555446789999877532 1 245 4999999999999764 25999999873
No 157
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.26 E-value=22 Score=23.31 Aligned_cols=37 Identities=22% Similarity=0.550 Sum_probs=23.5
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
+.|..|.+.+.. +.++ .-+..||.+| |+|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~----~~~~-a~~~~~H~~C----------------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT----GGVT-YREQPWHKEC----------------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS----SEEE-SSSSEEETTT----------------SBCSSSCCBCT
T ss_pred CCCcccCCeecc----ceEE-ECccccCCCC----------------CccCCCCCcCC
Confidence 678888888753 2222 2356777665 34888888774
No 158
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=31.78 E-value=6.8 Score=25.57 Aligned_cols=47 Identities=23% Similarity=0.465 Sum_probs=30.6
Q ss_pred CccccccccccccccCCeee-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
..=-||..+.. + +..+. -.|.-=||..|+.---. .+|..|.||.|+.
T Consensus 4 ~~~C~C~~~~~-~--~~MI~Cd~C~~W~H~~Cvgi~~~-----~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 4 LVTCFCMKPFA-G--RPMIECNECHTWIHLSCAKIRKS-----NVPEVFVCQKCRD 51 (52)
T ss_dssp CBCSTTCCBCT-T--CCEEECTTTCCEEETTTTTCCGG-----GCCSSCCCHHHHT
T ss_pred CeEEEeCCcCC-C--CCEEEcCCCCccccccccCCCcc-----cCCCcEECcCCCC
Confidence 33447877643 2 13444 37999999999963332 2456899999965
No 159
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.41 E-value=32 Score=23.49 Aligned_cols=38 Identities=18% Similarity=0.421 Sum_probs=24.0
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
+.|..|.+.+. +. .+.. -+..||.+| |+|-.|+++|..
T Consensus 16 ~~C~~C~~~I~-~~--~v~a--~~~~~H~~C----------------F~C~~C~~~L~~ 53 (79)
T 2cor_A 16 YICQKCHAIID-EQ--PLIF--KNDPYHPDH----------------FNCANCGKELTA 53 (79)
T ss_dssp CBCTTTCCBCC-SC--CCCC--SSSCCCTTT----------------SBCSSSCCBCCT
T ss_pred CCCccCCCEec-ce--EEEE--CcceeCCCC----------------CEeCCCCCccCC
Confidence 67888888876 21 2222 255667655 348888887764
No 160
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.34 E-value=39 Score=22.67 Aligned_cols=39 Identities=31% Similarity=0.605 Sum_probs=25.3
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
+.|+.|.+.+.+ . .+..+ +..||.+| |+|-.|+++|...
T Consensus 16 ~~C~~C~~~I~~-~--~v~a~--~~~~H~~C----------------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE-N--YLSAM--DTVWHPEC----------------FVCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS-S--CEEET--TEEECTTT----------------CBCSSSCCBSCSS
T ss_pred CccccCCCeecc-e--eEEEC--CCeEecCc----------------CChhhCCCCCCCC
Confidence 678888888864 1 33333 45677655 3488888887653
No 161
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=30.72 E-value=13 Score=29.43 Aligned_cols=40 Identities=25% Similarity=0.552 Sum_probs=28.8
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
+.|..|.+.+..++ .+...=+..||.+|+ +|-.|+++|..
T Consensus 120 ~kC~~C~~~I~~~~---~v~~a~~~~~H~~CF----------------~C~~C~~~L~~ 159 (182)
T 2jtn_A 120 TKCAACQLGIPPTQ---VVRRAQDFVYHLHCF----------------ACVVCKRQLAT 159 (182)
T ss_dssp CCCTTTCCCCCSSC---CCCEETTEECCTTTC----------------CCTTTCCCCCT
T ss_pred cccccCCCccCCCc---eEEecCCCCEEeCCC----------------cCCCCCCCCCC
Confidence 78999999987643 332234678887774 49999998864
No 162
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=30.22 E-value=4.5 Score=27.47 Aligned_cols=44 Identities=25% Similarity=0.613 Sum_probs=29.3
Q ss_pred CccccccccccccccCCeeee-c--CC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRL-G--CL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~--C~-HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
.-| +|.+.- .| +.+.= . |. .-||..|+. |...+. ..+.||.|+.
T Consensus 10 ~yC-~C~~~~-~g---~mi~CD~~~C~~~wfH~~Cvg--l~~~p~----~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVS-YG---EMIGCDNPDCPIEWFHFACVD--LTTKPK----GKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEEC-CS---EEEECSCTTCSSCEEETGGGT--CSSCCS----SCCCCHHHHC
T ss_pred cEE-ECCCCC-CC---CeeEeeCCCCCCCCEecccCC--cccCCC----CCEECcCccC
Confidence 556 898863 23 23332 5 76 799999998 554432 4688999964
No 163
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.86 E-value=9.8 Score=25.96 Aligned_cols=36 Identities=17% Similarity=0.438 Sum_probs=27.6
Q ss_pred CccccccccccccccCCeeee---c--CCCccCHHHHHHHHhc
Q 028040 52 PKCCQCQAVLEEESGSETTRL---G--CLHVIHTSCLVSHIKS 89 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL---~--C~HvFH~~CLd~Wl~~ 89 (215)
..|+-|...++-.+ ....| . |++.|=|.|+..|-..
T Consensus 7 k~CP~C~~~Iek~~--GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDG--GCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCC--SCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCC--CCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 46999999988654 44444 2 8899999999999754
No 164
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.76 E-value=31 Score=22.62 Aligned_cols=37 Identities=24% Similarity=0.580 Sum_probs=22.7
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
+.|..|.+.+.. . .+..+ +..||.+|+ +|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~-~--~~~a~--~~~~H~~CF----------------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-G--GITYQ--DQPWHADCF----------------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-T--CEEET--TEEECTTTT----------------BCTTTCCBCT
T ss_pred CCCcccCCEeCc-c--eEEEC--ccccccCcC----------------EECCCCCCCC
Confidence 578888887753 1 23222 456776553 4778877775
No 165
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=28.88 E-value=42 Score=24.58 Aligned_cols=47 Identities=23% Similarity=0.414 Sum_probs=28.6
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~~ 112 (215)
-.|..|...|... .-...=+.+|...|..+.+.. +|..|+++|.+.+
T Consensus 31 F~C~~C~~~L~~~----~f~~~~g~~yC~~cy~~~~~~----------~C~~C~~~I~~~~ 77 (126)
T 2xqn_T 31 FCCFDCDSILAGE----IYVMVNDKPVCKPCYVKNHAV----------VCQGCHNAIDPEV 77 (126)
T ss_dssp SBCTTTCCBCTTS----EEEEETTEEEEHHHHHHHSCC----------BCTTTCSBCCTTS
T ss_pred CCcCCCCCCCCcC----EEEeECCEEechHHhCcCcCc----------cCcccCCcCCcCc
Confidence 4577778877532 222233556667777654432 4888888888643
No 166
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.50 E-value=31 Score=23.39 Aligned_cols=37 Identities=24% Similarity=0.461 Sum_probs=24.9
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
..|..|.+.+.. +.++ .-+.+||.+|+ +|-.|+++|.
T Consensus 16 ~~C~~C~~~I~~----~~~~-a~~~~~H~~CF----------------~C~~C~~~L~ 52 (79)
T 1x62_A 16 PMCDKCGTGIVG----VFVK-LRDRHRHPECY----------------VCTDCGTNLK 52 (79)
T ss_dssp CCCSSSCCCCCS----SCEE-CSSCEECTTTT----------------SCSSSCCCHH
T ss_pred CccccCCCCccC----cEEE-ECcceeCcCcC----------------eeCCCCCCCC
Confidence 679999888764 2222 23578887764 4888888774
No 167
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.29 E-value=25 Score=26.98 Aligned_cols=40 Identities=20% Similarity=0.519 Sum_probs=28.8
Q ss_pred ceeeccCCCCCCCccccccccccccccCCeee---ecCCCccCHHHHHHH
Q 028040 40 SEWVIDGEYDWPPKCCQCQAVLEEESGSETTR---LGCLHVIHTSCLVSH 86 (215)
Q Consensus 40 lqwL~Dsdyd~~~~C~ICle~L~~gD~~evvR---L~C~HvFH~~CLd~W 86 (215)
..|+.|.+- ..|.+|...|.-- ..| -.||++|-..|....
T Consensus 61 ~~W~~d~~~---~~C~~C~~~Fs~~----~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 61 RKWAEDNEV---QNCMACGKGFSVT----VRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCCCCGGGC---CBCTTTCCBCCSS----SCCEECTTTCCEECGGGSCEE
T ss_pred CccccCCCC---CCCcCcCCccccc----cccccCCCCCeEEChHHhCCc
Confidence 468887754 4799999998542 222 369999999887654
No 168
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.19 E-value=40 Score=22.10 Aligned_cols=39 Identities=21% Similarity=0.490 Sum_probs=23.1
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|..|.+.+.+ . .+..+ +..||.+|+ +|-.|+++|...
T Consensus 6 ~~C~~C~~~I~~-~--~~~a~--~~~~H~~CF----------------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIG-R--VIKAM--NNSWHPECF----------------RCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCS-C--CEEET--TEEECTTTS----------------BCSSSCCBCSSS
T ss_pred CcCccCCCEecc-e--EEEEC--cccccccCC----------------EeCCCCCcCCCC
Confidence 568888877752 1 22222 456666653 377787776543
No 169
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=26.64 E-value=1.2e+02 Score=22.94 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=35.8
Q ss_pred CccccccccccccccCCeee--ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 028040 52 PKCCQCQAVLEEESGSETTR--LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR--L~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~ 109 (215)
+.|.||-+++--....++-. --|+--.-+.|++.-.+.. ...||.|++..-
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG-------~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG-------TQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS-------CSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc-------CccccccCCccc
Confidence 78999999975322122222 2588888999998877653 235999999875
No 170
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=25.94 E-value=23 Score=26.44 Aligned_cols=54 Identities=19% Similarity=0.429 Sum_probs=35.6
Q ss_pred CccccccccccccccCCeeee--cCCCccCHHHHHHH------HhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSH------IKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~W------l~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
-.|.+|..++.+++ +-+.= .|..=||..|+.-- |...+ ...|.||.|+..--++
T Consensus 4 ~~C~iC~~p~~~~~--~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~----~~~~~Cp~C~~~~~~~ 65 (105)
T 2xb1_A 4 YPCGACRSEVNDDQ--DAILCEASCQKWFHRECTGMTESAYGLLTTEA----SAVWACDLCLKTKEGS 65 (105)
T ss_dssp CBCTTTCSBCCTTS--CEEECTTTTCCEEEGGGTTCCHHHHHHHHHCT----TEEECCHHHHHTTTTC
T ss_pred CCCCCCCCccCCCC--CEEEecCCcccccccccCCcCHHHHHhhccCC----CCCEECccccCcCCCC
Confidence 45999999986543 44443 68999999998422 11111 1468899998765543
No 171
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=25.80 E-value=45 Score=19.59 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=22.6
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~ 106 (215)
-.|.+|...|... .=|..+++.+ +....|.|+.|.+
T Consensus 13 ~~C~~C~k~f~~~----------------~~L~~H~~~H---~~~k~~~C~~C~k 48 (48)
T 2epr_A 13 VACEICGKIFRDV----------------YHLNRHKLSH---SGEKPYSSGPSSG 48 (48)
T ss_dssp EEETTTTEEESSH----------------HHHHHHGGGS---CSCCCCCSCCCCC
T ss_pred eeCCCCCcccCCH----------------HHHHHHHHhc---CCCCCccCCCCCC
Confidence 4577777776542 3366666553 3445699999964
No 172
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.10 E-value=41 Score=22.78 Aligned_cols=38 Identities=26% Similarity=0.704 Sum_probs=23.6
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
+.|+.|.+.+. + +.++ .=+..||.+|+ +|-.|+++|..
T Consensus 16 ~~C~~C~~~I~-~---~~v~-a~~~~wH~~CF----------------~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-G---EVVS-ALGKTYHPDCF----------------VCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-S---CCEE-ETTEEECTTTS----------------SCSSSCCCCCS
T ss_pred CcCccccCEec-c---ceEE-ECCceeCccCC----------------ccccCCCCCCC
Confidence 67888888876 2 2332 23466776653 47777777654
No 173
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=24.65 E-value=31 Score=22.62 Aligned_cols=13 Identities=31% Similarity=1.142 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCC
Q 028040 95 APAGYVCPLCSTT 107 (215)
Q Consensus 95 ap~g~~CP~Cr~~ 107 (215)
.|..++||+|+.+
T Consensus 27 lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 27 LPDDWCCPVCGVS 39 (46)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 4567899999864
No 174
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.39 E-value=72 Score=18.14 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=22.5
Q ss_pred CCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLC 104 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~C 104 (215)
+-.|.+|...|.... =|...++. ++....|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~----------------~L~~H~~~---H~~~k~~~C~~C 46 (46)
T 2eop_A 12 PHECRECGKSFSFNS----------------QLIVHQRI---HTGENPSGPSSG 46 (46)
T ss_dssp SCBCTTTCCBCSSHH----------------HHHHHHTT---TTTSCCSCCCCC
T ss_pred CeeCCCCCchhCCHH----------------HHHHHHHH---cCCCCCCCCCCC
Confidence 355999988886532 35555544 344456899988
No 175
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.08 E-value=55 Score=21.94 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=21.8
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
+.|+-|.+.+.. . .+. .-+..||.+| |+|-.|+++|.+
T Consensus 6 ~~C~~C~~~I~~-~--~v~--a~~~~wH~~C----------------F~C~~C~~~L~~ 43 (73)
T 1wig_A 6 SGCDSCEKYITG-R--VLE--AGEKHYHPSC----------------ALCVRCGQMFAE 43 (73)
T ss_dssp CSCSSSCCCCSS-C--CBC--CSSCCBCTTT----------------SCCSSSCCCCCS
T ss_pred CCcccCCCEecC-e--eEE--eCCCCCCCCc----------------CEeCCCCCCCCC
Confidence 567777777643 1 222 2345666655 247777777653
No 176
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.81 E-value=78 Score=18.04 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCC
Q 028040 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLC 104 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~C 104 (215)
+-.|.+|...|.... =|...++. ++....|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~----------------~L~~H~~~---H~~~k~~~C~~C 46 (46)
T 2epz_A 12 PFDCIDCGKAFSDHI----------------GLNQHRRI---HTGEKPSGPSSG 46 (46)
T ss_dssp SBCCTTTCCCBSSHH----------------HHHHHHTT---TTTCCCCSSCCC
T ss_pred CeECCCCCceeCCHH----------------HHHHHHHH---hCCCCCCCCCCC
Confidence 355999988886532 25555544 344457899988
No 177
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=23.75 E-value=22 Score=24.14 Aligned_cols=29 Identities=24% Similarity=0.541 Sum_probs=23.4
Q ss_pred cccccceeeeeccCccCcccccCCCCceee
Q 028040 7 RKATKLYCFVHKVPVCGECICFPEHQICVV 36 (215)
Q Consensus 7 rk~T~~fCf~Hrv~VC~~Ci~~~~H~~CvV 36 (215)
.+.-++||-+.+..||..|.. .+|..-.+
T Consensus 25 ~e~l~lfC~~d~~~iC~~C~~-~~H~~H~~ 53 (72)
T 2csv_A 25 GKTMELFCQTDQTCICYLCMF-QEHKNHST 53 (72)
T ss_dssp CCBCCEEESSSCCEECHHHHH-TTTSSSCE
T ss_pred CCceEEEeCCCCeEEccccCC-CCCCCCCE
Confidence 457789999999999999986 78865544
No 178
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=23.75 E-value=44 Score=21.61 Aligned_cols=38 Identities=21% Similarity=0.509 Sum_probs=26.2
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
+.|+.|.+.+. + +.++ .=+..||.+| |+|-.|+++|..
T Consensus 6 ~~C~~C~~~I~-~---~~~~-a~~~~~H~~C----------------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-G---RVVN-AMGKQWHVEH----------------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-S---CEEC-CTTSBEETTT----------------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-c---eEEE-ECccccccCc----------------CEECCCCCCCCC
Confidence 78999999887 3 2332 2356777765 358899888864
No 179
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.71 E-value=19 Score=23.78 Aligned_cols=40 Identities=18% Similarity=0.509 Sum_probs=26.4
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
+.|..|.+.+..++ .+++. =+..||.+| |+|-.|+++|..
T Consensus 6 ~~C~~C~~~I~~~~--~~~~a-~~~~~H~~C----------------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGT--RKMEY-KGSSWHETC----------------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSS--CEEEE-TTEEEETTT----------------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCc--eEEEE-CcCeecccC----------------CcccccCCccCC
Confidence 67899998887643 33332 345777665 348888887754
No 180
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=23.68 E-value=77 Score=32.62 Aligned_cols=46 Identities=13% Similarity=0.006 Sum_probs=36.8
Q ss_pred CccccccccccccccCCeeeecCC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~-HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
-.|+|=++-+. +.|.++-| ++|-++.|.+||.+. -+||.=|.++..
T Consensus 892 F~cPIs~~lM~-----DPVilpsG~~TydR~~I~~wl~~~--------~tdP~Tr~~L~~ 938 (968)
T 3m62_A 892 FLDPLMYTIMK-----DPVILPASKMNIDRSTIKAHLLSD--------STDPFNRMPLKL 938 (968)
T ss_dssp GBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHHTTC--------CBCTTTCCBCCG
T ss_pred hCCcchhhHHh-----CCeEcCCCCEEECHHHHHHHHhcC--------CCCCCCCCCCCc
Confidence 34888887773 48999987 699999999999863 259999888865
No 181
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.20 E-value=80 Score=17.91 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=22.0
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLC 104 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~C 104 (215)
-.|.+|...|... .=|...++. ++....|.|+.|
T Consensus 13 ~~C~~C~k~f~~~----------------~~L~~H~~~---H~~~~~~~C~~C 46 (46)
T 2ytr_A 13 YKCNECGKAFSQT----------------SKLARHQRI---HTGEKPSGPSSG 46 (46)
T ss_dssp TCCTTTCCCCSSH----------------HHHHHHHTT---TTTCSCCCSCCC
T ss_pred cCCCCCCCccCCH----------------HHHHHHHHh---cCCCCCCCCCCC
Confidence 4599998888653 235555544 334456899988
No 182
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=22.98 E-value=53 Score=18.74 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=22.2
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLC 104 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~C 104 (215)
-.|.+|...|.... =|...++. ++....|.|++|
T Consensus 13 ~~C~~C~k~f~~~~----------------~L~~H~~~---H~~~k~~~C~~C 46 (46)
T 2el4_A 13 YGCSQCAKTFSLKS----------------QLIVHQRS---HTGVKPSGPSSG 46 (46)
T ss_dssp EECSSSSCEESSHH----------------HHHHHGGG---SSSCCCSCCTTC
T ss_pred eECCCCCchhCCHH----------------HHHHHHHH---hCCCCCCCCCCC
Confidence 45888888886532 35555554 344457899988
No 183
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=22.84 E-value=39 Score=26.31 Aligned_cols=41 Identities=24% Similarity=0.538 Sum_probs=29.9
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
+.|..|.+.+..+ +.+...=+..||.+|+ +|-.|++.|...
T Consensus 66 ~~C~~C~~~I~~~---~~v~~a~~~~~H~~CF----------------~C~~C~~~L~~g 106 (169)
T 2rgt_A 66 TKCAACQLGIPPT---QVVRRAQDFVYHLHCF----------------ACVVCKRQLATG 106 (169)
T ss_dssp CBCTTTCCBCCTT---SEEEEETTEEEEGGGC----------------BCTTTCCBCCTT
T ss_pred ccccccccccCCC---cEEEEcCCceEeeCCC----------------cCCCCCCCCCCC
Confidence 7899999888664 3443345788998884 499999988643
No 184
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.62 E-value=66 Score=23.54 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=24.7
Q ss_pred ccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 53 KCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 53 ~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
.|..|...|...+ ..-...=+.+|...|..+-+... .+|..|.++|.+.
T Consensus 31 ~C~~C~~~L~~~~--~~~~~~~g~~yC~~~y~~~~~~~--------~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 31 SCDLCGCRLGEVG--RRLYYKLGRKLCRRDYLRLFGQD--------GLCASCDKRIRAY 79 (131)
T ss_dssp BCTTTCCBCSSTT--CCEEEETTEEECHHHHHHHHCCC--------EECTTTCCEECTT
T ss_pred ccCcCCCccccCC--CeEEEECCEEeecCchhhhCCCc--------cChhhcCCccCcc
Confidence 4666666664311 11122223456666666655321 1377777777653
No 185
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.59 E-value=75 Score=18.12 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=22.2
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLC 104 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~C 104 (215)
-.|.+|...|.... =|...++. ++....|.|++|
T Consensus 13 ~~C~~C~k~F~~~~----------------~L~~H~~~---H~~~k~~~C~~C 46 (46)
T 2ytn_A 13 YKCNECGKVFTQNS----------------HLARHRGI---HTGEKPSGPSSG 46 (46)
T ss_dssp CBCTTTCCBCSSHH----------------HHHHHGGG---TSCCCCCSCCCC
T ss_pred eECCCCCCeeCCHH----------------HHHHHhhh---cCCCCCCCCCCC
Confidence 55999988886532 25555554 334456899988
No 186
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=22.17 E-value=18 Score=26.76 Aligned_cols=44 Identities=20% Similarity=0.424 Sum_probs=27.9
Q ss_pred CCccccccccccccccCCeeee-cCC---CccCHHHHHHHHhcCCCCCCCCCCCCCC-CC
Q 028040 51 PPKCCQCQAVLEEESGSETTRL-GCL---HVIHTSCLVSHIKSFPPHTAPAGYVCPL-CS 105 (215)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL-~C~---HvFH~~CLd~Wl~~~p~nTap~g~~CP~-Cr 105 (215)
+.-| ||...- .| +.+.- .|. --||..|+. |...+. ..+.||. |+
T Consensus 26 ~~yC-iC~~~~-~g---~MI~CD~c~C~~eWfH~~CVg--l~~~p~----~~W~Cp~cC~ 74 (90)
T 2jmi_A 26 EVYC-FCRNVS-YG---PMVACDNPACPFEWFHYGCVG--LKQAPK----GKWYCSKDCK 74 (90)
T ss_dssp SCCS-TTTCCC-SS---SEECCCSSSCSCSCEETTTSS--CSSCTT----SCCCSSHHHH
T ss_pred CcEE-EeCCCC-CC---CEEEecCCCCccccCcCccCC--CCcCCC----CCccCChhhc
Confidence 3567 998753 22 33332 444 689999997 443322 4788999 96
No 187
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=22.00 E-value=36 Score=22.98 Aligned_cols=12 Identities=50% Similarity=1.353 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCC
Q 028040 96 PAGYVCPLCSTT 107 (215)
Q Consensus 96 p~g~~CP~Cr~~ 107 (215)
|..++||.|...
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 567899999874
No 188
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=21.77 E-value=1.8e+02 Score=20.94 Aligned_cols=21 Identities=10% Similarity=0.431 Sum_probs=14.8
Q ss_pred eeeccCCCCCCCccccccccccc
Q 028040 41 EWVIDGEYDWPPKCCQCQAVLEE 63 (215)
Q Consensus 41 qwL~Dsdyd~~~~C~ICle~L~~ 63 (215)
.|+.+.+.. -.|.+|...|..
T Consensus 17 ~~~~~~~~~--~~C~~C~~~f~~ 37 (155)
T 2rpc_A 17 KWIDEAQLS--RPKKSCDRTFST 37 (155)
T ss_dssp CBCCTTCCS--SSCCCCCCCBSS
T ss_pred Eeechhhcc--cccccCCcccCC
Confidence 366666555 679999888864
No 189
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.76 E-value=6.8 Score=26.01 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=19.7
Q ss_pred cccccceeeeeccCccCcccccCCC
Q 028040 7 RKATKLYCFVHKVPVCGECICFPEH 31 (215)
Q Consensus 7 rk~T~~fCf~Hrv~VC~~Ci~~~~H 31 (215)
.+.-++||-+.+..||..|....+|
T Consensus 25 ~e~L~lfC~~d~~~iC~~C~~~~eH 49 (57)
T 2egm_A 25 QEALKLFCEVDEEAICVVCRESRSH 49 (57)
T ss_dssp CCBCCEEETTTTEEECHHHHHSHHH
T ss_pred CceeeEEcCCCCcEEecccCCCCCC
Confidence 5677889999999999999853444
No 190
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=21.31 E-value=16 Score=25.31 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=23.1
Q ss_pred ccccceeeeeccCccCcccccCCCCceee
Q 028040 8 KATKLYCFVHKVPVCGECICFPEHQICVV 36 (215)
Q Consensus 8 k~T~~fCf~Hrv~VC~~Ci~~~~H~~CvV 36 (215)
+.-++||-+.+..||..|....+|..-.+
T Consensus 27 e~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 55 (84)
T 2dja_A 27 EKVNMYCVSDDQLICALCKLVGRHRDHQV 55 (84)
T ss_dssp SCCCEEETTTTEEECHHHHHTSTTTTCCB
T ss_pred ccccEEcCCCCceEcccCcCCCCCCCCCc
Confidence 46788999999999999986577765544
No 191
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.01 E-value=70 Score=18.32 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=22.1
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLC 104 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~C 104 (215)
-.|.+|...|... .=|...++. ++....|.|+.|
T Consensus 13 ~~C~~C~k~f~~~----------------~~L~~H~~~---H~~~~~~~C~~C 46 (46)
T 2em5_A 13 HQCHECGRGFTLK----------------SHLNQHQRI---HTGEKPSGPSSG 46 (46)
T ss_dssp EECSSSCCEESSH----------------HHHHHHHTT---TSCSCCSSCCCC
T ss_pred eECCcCCCccCCH----------------HHHHHHHHH---hCCCCCCCCCCC
Confidence 4588888888653 235566544 344456899988
No 192
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.74 E-value=57 Score=22.55 Aligned_cols=39 Identities=21% Similarity=0.504 Sum_probs=27.0
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~Cr~~I~P~ 111 (215)
..|..|.+.+.. +.++ .-+..||.+|+ +|-.|+++|...
T Consensus 26 ~~C~~C~~~I~~----~~~~-a~~~~~H~~CF----------------~C~~C~~~L~~~ 64 (89)
T 1x64_A 26 PLCDKCGSGIVG----AVVK-ARDKYRHPECF----------------VCADCNLNLKQK 64 (89)
T ss_dssp CBCTTTCCBCCS----CCEE-SSSCEECTTTC----------------CCSSSCCCTTTS
T ss_pred CCcccCCCEecc----cEEE-ECCceECccCC----------------EecCCCCCCCCC
Confidence 679999998864 2332 24578887763 488998888653
No 193
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=20.74 E-value=54 Score=23.64 Aligned_cols=35 Identities=20% Similarity=0.520 Sum_probs=22.6
Q ss_pred cCCCccCHHHH---H---HHHhcCCCCCCCCCCCCCCCCCCccC
Q 028040 73 GCLHVIHTSCL---V---SHIKSFPPHTAPAGYVCPLCSTTIWP 110 (215)
Q Consensus 73 ~C~HvFH~~CL---d---~Wl~~~p~nTap~g~~CP~Cr~~I~P 110 (215)
.|.+-||..|+ + +-|...+. ...|.||.|...-.+
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~---~~~~~c~~C~~~~~~ 47 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPE---SVAYTCVNCTERHVD 47 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCT---TTTCCSSCCTTTSCC
T ss_pred cCCCccCCcccccCHHHHHHHhhccc---cceeeCccccccccC
Confidence 48899999996 2 22344331 236899999765443
No 194
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=20.68 E-value=40 Score=31.11 Aligned_cols=58 Identities=22% Similarity=0.427 Sum_probs=36.3
Q ss_pred eeccCC-CCCCCccccccccccccccCCeeee--cCCCccCHHHHHHHHhcCCCC--CCCCCCCCCCCCC
Q 028040 42 WVIDGE-YDWPPKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKSFPPH--TAPAGYVCPLCST 106 (215)
Q Consensus 42 wL~Dsd-yd~~~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~Wl~~~p~n--Tap~g~~CP~Cr~ 106 (215)
|..|.| |+ ..|.+|-+. |+ .+.-= .|..+|-.+||+..+-..-.. .+-....|=+|.-
T Consensus 85 f~~D~DG~~--~yCr~C~~G---g~--l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 85 FLYDDDGYQ--SYCSICCSG---ET--LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp TCBCSSSSB--CSCTTTCCC---SS--CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred cccCCCCCc--ccceEcCCC---Ce--EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 455655 66 889999863 21 22222 699999999999998322100 0114567989963
No 195
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=20.56 E-value=44 Score=22.19 Aligned_cols=13 Identities=31% Similarity=1.160 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCC
Q 028040 95 APAGYVCPLCSTT 107 (215)
Q Consensus 95 ap~g~~CP~Cr~~ 107 (215)
.|..++||+|..+
T Consensus 33 lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 33 LPDDWACPVCGAS 45 (52)
T ss_dssp SCTTCCCSSSCCC
T ss_pred CCCCCcCCCCCCc
Confidence 3678899999863
No 196
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.37 E-value=97 Score=17.67 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=22.1
Q ss_pred CccccccccccccccCCeeeecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCC
Q 028040 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLC 104 (215)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~Wl~~~p~nTap~g~~CP~C 104 (215)
-.|.+|...|... .=|...++. ++....|.|+.|
T Consensus 13 ~~C~~C~k~f~~~----------------~~L~~H~~~---H~~~k~~~C~~C 46 (46)
T 2ytq_A 13 YGCSECGKAFSSK----------------SYLIIHMRT---HSGEKPSGPSSG 46 (46)
T ss_dssp CBCSSSCCBCSCH----------------HHHHHHHTT---TCCSCSSCCCCC
T ss_pred cCCCccChhhCCh----------------HHHHHHHHH---hCCCCCCCCCCC
Confidence 4588898888653 235555554 344456899988
Done!