BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028044
         (214 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZPS|A Chain A, Crystal Structure Of Methanobacterium Thermoautotrophicum
           Phosphoribosyl-Amp Cyclohydrolase Hisi
 pdb|1ZPS|B Chain B, Crystal Structure Of Methanobacterium Thermoautotrophicum
           Phosphoribosyl-Amp Cyclohydrolase Hisi
          Length = 138

 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 61/92 (66%)

Query: 64  LAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDI 123
           L +A+AQ+ +TG +LM  + NR+AL  T+ +  A ++S SR  LW KGE+S +   V+D+
Sbjct: 23  LIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDV 82

Query: 124 FLDCDRDSIIYLGKPDGPTCHTGSETCYYTSV 155
            +DCD D+++   + +G  CHTG  +C+Y S+
Sbjct: 83  LVDCDGDAVVLKVEQEGGACHTGYRSCFYRSI 114


>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
           Anosmin-1
          Length = 680

 Score = 29.6 bits (65), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 96  KATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTS 154
           +A  ++R+  +  + G T +N+I +QD+   C     +   +P  P  H+ +E  ++T+
Sbjct: 442 EACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTV---QPIRPKSHSKAEAVFFTT 497


>pdb|2FSQ|A Chain A, Crystal Structure Of The Conserved Protein Of Unknown
           Function Atu0111 From Agrobacterium Tumefaciens Str. C58
          Length = 243

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 142 TCH--TGSET-CYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAASKNGKPSWTKR 198
            CH   GS+T     S      D P + + LA T + SL  T+ Q    S+   P W + 
Sbjct: 46  VCHLVEGSQTESAIVSTRQRFLDXP-EASQLAFTPVSSLHXTVFQGVIESRRALPYWPQT 104

Query: 199 LLLDSKL 205
           L LD+ +
Sbjct: 105 LPLDTPI 111


>pdb|2QIP|A Chain A, Crystal Structure Of A Protein Of Unknown Function Vpa0982
           From Vibrio Parahaemolyticus Rimd 2210633
          Length = 165

 Score = 28.1 bits (61), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 65  AVAIAQNVDTGAILMQGFANRDALATTISSR---KATFYSRSRSTLWTKGETSQNFINVQ 121
           A+ IA +VD   IL+ G  +   L   I  R   K T Y   R T  T  + + NF+ + 
Sbjct: 102 AIEIAPDVDR-VILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAID 160

Query: 122 DIFL 125
           D FL
Sbjct: 161 DDFL 164


>pdb|3H9M|A Chain A, Crystal Structure Of Para-Aminobenzoate Synthetase,
           Component I From Cytophaga Hutchinsonii
          Length = 436

 Score = 26.9 bits (58), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 137 KPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLYSLES 179
           +PDG   H GS +   T +  A    PVQ +++ +  + S ES
Sbjct: 122 QPDGILIHKGSGSSLVTEIQHAEPSTPVQQSDIFVKQVVSKES 164


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.128    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,792,237
Number of Sequences: 62578
Number of extensions: 214838
Number of successful extensions: 532
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 12
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)