Query 028044
Match_columns 214
No_of_seqs 238 out of 1554
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:22:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02759 bifunctional phosphor 100.0 8.4E-69 1.8E-73 461.1 15.9 150 53-214 4-155 (203)
2 PLN02346 histidine biosynthesi 100.0 3.8E-66 8.2E-71 459.8 18.0 195 17-214 7-206 (271)
3 COG0139 HisI Phosphoribosyl-AM 100.0 2.7E-57 5.8E-62 357.7 12.6 103 52-154 6-109 (111)
4 PRK00051 hisI phosphoribosyl-A 100.0 2.3E-56 5.1E-61 359.3 13.0 105 52-156 2-106 (125)
5 KOG4311 Histidinol dehydrogena 100.0 5.4E-48 1.2E-52 345.5 8.9 195 1-214 78-283 (359)
6 PF01502 PRA-CH: Phosphoribosy 100.0 1.4E-45 3.1E-50 274.4 9.6 75 79-153 1-75 (75)
7 TIGR03188 histidine_hisI phosp 99.3 1.2E-12 2.6E-17 99.5 1.4 39 174-214 1-40 (84)
8 COG0140 HisI Phosphoribosyl-AT 99.2 2E-12 4.2E-17 100.1 1.1 39 174-214 1-40 (92)
9 PRK00400 hisE phosphoribosyl-A 99.2 7.1E-12 1.5E-16 98.8 2.0 41 172-214 3-44 (105)
10 PF01503 PRA-PH: Phosphoribosy 94.9 0.007 1.5E-07 44.9 -0.1 35 174-214 1-35 (83)
11 PF15596 Imm34: Immunity prote 46.0 31 0.00068 27.9 3.8 35 171-207 48-82 (110)
12 cd00495 Ribosomal_L25_TL5_CTC 44.1 37 0.00081 25.4 3.8 33 61-95 21-53 (91)
13 cd04474 RPA1_DBD_A RPA1_DBD_A: 43.9 91 0.002 23.7 6.0 57 62-118 34-92 (104)
14 PRK05943 50S ribosomal protein 37.0 40 0.00087 25.6 3.0 32 61-94 22-53 (94)
15 PF14076 DUF4258: Domain of un 34.9 1.5E+02 0.0032 20.2 6.2 34 83-116 15-52 (73)
16 PF09137 Glucodextran_N: Gluco 32.0 74 0.0016 29.2 4.4 25 113-137 93-117 (269)
17 TIGR02196 GlrX_YruB Glutaredox 31.7 53 0.0012 21.5 2.7 25 63-92 49-73 (74)
18 KOG3953 SOCS box protein SSB-1 26.8 59 0.0013 29.6 2.8 60 93-152 108-180 (242)
19 PF01386 Ribosomal_L25p: Ribos 26.8 92 0.002 23.3 3.5 31 61-93 19-49 (88)
20 PRK05618 50S ribosomal protein 24.0 86 0.0019 26.9 3.2 33 61-95 24-56 (197)
21 PRK10795 penicillin-binding pr 22.0 1.2E+02 0.0025 30.5 4.1 37 43-81 252-288 (634)
22 TIGR03577 EF_0830 conserved hy 22.0 74 0.0016 25.7 2.2 19 75-93 90-108 (115)
23 PF03413 PepSY: Peptidase prop 20.6 1.4E+02 0.003 19.6 3.1 19 61-79 44-62 (64)
No 1
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=100.00 E-value=8.4e-69 Score=461.14 Aligned_cols=150 Identities=40% Similarity=0.696 Sum_probs=140.7
Q ss_pred hhhccccCCC-CeEEEEEEecCCCcEEEEeecCHHHHHHHHhcCcEEEEeCCCCcceeccCCCCCeEEEEEeeecCCCCe
Q 028044 53 LLDSVKWDNK-GLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDS 131 (214)
Q Consensus 53 ~~~~l~~d~~-GLiPaIvQd~~tg~VLMlaymN~eAl~~Tl~tg~~~y~SRSR~~lW~KGetSGn~q~v~~i~~DCD~Da 131 (214)
+++.|+||++ |||||||||+.||+|||+||||+|||++||+||++|||||||++||+|||||||+|+|++|++|||+||
T Consensus 4 ~~~~l~~~~~~gLip~ivqd~~tg~vLml~ymn~eal~~Tl~tg~~~~~SRSr~~lW~KGetSG~~q~v~~i~~DCD~D~ 83 (203)
T PRK02759 4 QIEELDFDKNDGLIPAIVQDALTGEVLMLGYMNREALEKTLETGEVTFFSRSKQRLWTKGETSGNTQKVVSIRLDCDNDT 83 (203)
T ss_pred hhhccCcCCCCCcEEEEEEECCCCCEEEEEecCHHHHHHHHhcCcEEEEeCCCCcccCCCCCCCCeEEEEEEEecCCCCe
Confidence 5678999997 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCCCcCCCcccccccccccccCCCcCCCchhhHHHHHHHHHHHHHhhcCCCCCCceeeecccCC-hHHHhhh
Q 028044 132 IIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKI 210 (214)
Q Consensus 132 ll~~V~~~G~aCHtg~~SCF~~~~~~~~~~~~~~~~~~~~~~L~~L~~iI~~Rk~~~peg~~SYTa~L~~~G-~kI~kKI 210 (214)
||++|+|.|||||||++||||+.+.. +....+|++|+++|.+|+.++|++ |||++||++| ++|+|||
T Consensus 84 ll~~V~~~G~aCHtg~~sCF~~~~~~----------~~~~~~L~~L~~~I~~Rk~~~pe~--SYT~~L~~~G~~kI~kKv 151 (203)
T PRK02759 84 LLVLVEPIGPACHTGTRSCFYREKKA----------APPWDFLSQLEQLIAERKNAPPEG--SYTAKLFASGTKRIAQKV 151 (203)
T ss_pred EEEEEEecCCcCCCCCCCCCCCcccc----------cchhhHHHHHHHHHHHHHhCCCCC--cHHHHHHhCcHHHHHHHH
Confidence 99999999999999999999986521 112358999999999999999987 9999999999 9999999
Q ss_pred hhcC
Q 028044 211 RYNN 214 (214)
Q Consensus 211 GEEA 214 (214)
||||
T Consensus 152 gEEA 155 (203)
T PRK02759 152 GEEA 155 (203)
T ss_pred HHHH
Confidence 9996
No 2
>PLN02346 histidine biosynthesis bifunctional protein hisIE
Probab=100.00 E-value=3.8e-66 Score=459.81 Aligned_cols=195 Identities=69% Similarity=1.056 Sum_probs=160.3
Q ss_pred CCCcccccccc-ccccceeccccCCCCCCcchhhHHHhhhccccCCCCeEEEEEEecCCCcEEEEeecCHHHHHHHHhcC
Q 028044 17 TGSDRCRDNDM-KRNCLVFASSTESNSNPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSR 95 (214)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~GLiPaIvQd~~tg~VLMlaymN~eAl~~Tl~tg 95 (214)
-|..+|..+.. +.-.-..+-. +.+-.++.+.+++.+++.|+||++|||||||||+.||+||||||||+|||++||+||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~gLipaivQd~~tg~VLml~ymn~eal~~Tl~tg 85 (271)
T PLN02346 7 SPASPCRRDRKISAASKAAAGS-KTLAEPALEPKVESLLDSVKWDDKGLAVAIAQNVDTGAILMQGFANREAISATISSR 85 (271)
T ss_pred ccccccccchhhcccccccccc-cCccccccchhHHHHHHhcCcCCCCCEEEEEEECCCCCEEEEEecCHHHHHHHHhcC
Confidence 46788865543 3221111211 123446888999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCcceeccCCCCCeEEEEEeeecCCCCeEEEEEeeCCCCCcCCCcccccccccccccCCCcCCCchhhHHHH
Q 028044 96 KATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLY 175 (214)
Q Consensus 96 ~~~y~SRSR~~lW~KGetSGn~q~v~~i~~DCD~Dall~~V~~~G~aCHtg~~SCF~~~~~~~~~~~~~~~~~~~~~~L~ 175 (214)
++|||||||++||+|||||||+|+|++|++|||+|||||+|+|.|||||||++||||+.+........+..+.....+|+
T Consensus 86 ~~~y~SRSR~~LW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~aCHtg~~SCF~~~~~~~~~~~~~~~~~~~~~~L~ 165 (271)
T PLN02346 86 KATFYSRSRSGLWTKGETSGNFINVHDIYLDCDRDSIIYLGTPDGPTCHTGAETCYYTSVDDALQNGGPHGNKLALTTLY 165 (271)
T ss_pred cEEEEeCCCCccccCCCCcCCeEEEEEEEecCCCCeEEEEEEecCCcccCCCCCCcCccccccccccccccccchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999986531110000111112336899
Q ss_pred HHHHHHHHHhhc----CCCCCCceeeecccCChHHHhhhhhcC
Q 028044 176 SLESTISQRKAA----SKNGKPSWTKRLLLDSKLLCSKIRYNN 214 (214)
Q Consensus 176 ~L~~iI~~Rk~~----~peg~~SYTa~L~~~G~kI~kKIGEEA 214 (214)
+|+++|.+|+.+ +|++ |||++||+++++|++||||||
T Consensus 166 ~L~~~I~~Rk~~~~~~~~e~--SYT~~L~~~~~~I~kKlgEEA 206 (271)
T PLN02346 166 SLEETIQQRKEEAVPQGGKP--SWTKRLLQDPELLCSKIREEA 206 (271)
T ss_pred HHHHHHHHHHhccCCCCCCC--chHHHHhcCHHHHHHHHHHHH
Confidence 999999999998 6665 999999995599999999996
No 3
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-57 Score=357.68 Aligned_cols=103 Identities=47% Similarity=0.865 Sum_probs=99.5
Q ss_pred HhhhccccCCCCeEEEEEEecCCCcEEEEeecCHHHHHHHHhcCcEEEEeCCCCcceeccCCCCCeEEEEEeeecCCCCe
Q 028044 52 RLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDS 131 (214)
Q Consensus 52 ~~~~~l~~d~~GLiPaIvQd~~tg~VLMlaymN~eAl~~Tl~tg~~~y~SRSR~~lW~KGetSGn~q~v~~i~~DCD~Da 131 (214)
.++..++|+++|||||||||+.||+|||+||||+|||++|++||++|||||||++||+|||||||+|+|++|++|||+||
T Consensus 6 ~~~~~~~~~~~gLvpaIvQd~~t~eVLMlaymN~eAl~kTleTg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Da 85 (111)
T COG0139 6 ALLDELDFDKDGLVPAIVQDAETGEVLMLAYMNEEALAKTLETGEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDA 85 (111)
T ss_pred hhhhhcccCCCCeEEEEEEecCCCcEEEEEecCHHHHHHHHhcCeEEEEEcchhhheccccccCceEEEEEEEcCCCCCE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCC-CCCcCCCccccccc
Q 028044 132 IIYLGKPDG-PTCHTGSETCYYTS 154 (214)
Q Consensus 132 ll~~V~~~G-~aCHtg~~SCF~~~ 154 (214)
||++|+|.| ||||||++|||++.
T Consensus 86 ll~~V~q~gg~aCHtG~~SCF~~~ 109 (111)
T COG0139 86 LLLLVEQIGGPACHTGTRSCFYRA 109 (111)
T ss_pred EEEEEEeCCCCcccCCCccccccc
Confidence 999999966 99999999999974
No 4
>PRK00051 hisI phosphoribosyl-AMP cyclohydrolase; Reviewed
Probab=100.00 E-value=2.3e-56 Score=359.27 Aligned_cols=105 Identities=42% Similarity=0.810 Sum_probs=102.0
Q ss_pred HhhhccccCCCCeEEEEEEecCCCcEEEEeecCHHHHHHHHhcCcEEEEeCCCCcceeccCCCCCeEEEEEeeecCCCCe
Q 028044 52 RLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDS 131 (214)
Q Consensus 52 ~~~~~l~~d~~GLiPaIvQd~~tg~VLMlaymN~eAl~~Tl~tg~~~y~SRSR~~lW~KGetSGn~q~v~~i~~DCD~Da 131 (214)
.+++.|+||++|||||||||+.||+|||+||||+|||++||+||++|||||||++||+|||||||+|+|++|++|||+||
T Consensus 2 ~~~~~l~~~~~GLipaivqd~~tg~VLMlaymn~eAl~~Tl~tg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ 81 (125)
T PRK00051 2 KILDRLKFDADGLVPAIAQDAETGEVLMVAWMNEEALAKTLETGRAHYWSRSRQKLWRKGETSGHVQKVHEVRLDCDGDA 81 (125)
T ss_pred cHhhccccCCCCcEEEEEEECCCCCEEEEEEcCHHHHHHHHhcCcEEEEeCccCcccCCCCCcCCeEEEEEEEecCCCCE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCCCcCCCccccccccc
Q 028044 132 IIYLGKPDGPTCHTGSETCYYTSVL 156 (214)
Q Consensus 132 ll~~V~~~G~aCHtg~~SCF~~~~~ 156 (214)
||++|+|.|||||||++||||+++.
T Consensus 82 Ll~~V~q~G~aCHtg~~SCF~~~~~ 106 (125)
T PRK00051 82 VLLKVEQVGAACHTGRRSCFYRKLE 106 (125)
T ss_pred EEEEEEecCCcccCCCCCccceeec
Confidence 9999999999999999999999874
No 5
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-48 Score=345.52 Aligned_cols=195 Identities=49% Similarity=0.717 Sum_probs=165.7
Q ss_pred Cccccccccccceecc--CCCccccccc---cccccceeccccC----CCCCCcchhhHHHhhhccccCC-CCeEEEEEE
Q 028044 1 MAVSYSQCVQSLKVSL--TGSDRCRDND---MKRNCLVFASSTE----SNSNPVLQSKVDRLLDSVKWDN-KGLAVAIAQ 70 (214)
Q Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~d~-~GLiPaIvQ 70 (214)
|++|+.+-.+++-+++ .|.++-++.. |..+.+|..|... .+|++..+.+++.+++.++||+ +||+.+.|.
T Consensus 78 ~~~Sq~A~~~~~~~s~~niPker~v~~e~g~F~~q~~v~~sfsv~~~v~~K~~~k~~l~d~~L~~i~tDr~dgl~~tlvv 157 (359)
T KOG4311|consen 78 MAVSQNALAQSLARSSCNIPKERVVVEENGSFRDQKLVSRSFSVFACVDNKNIAKQALVDNLLDRIKTDRKDGLVATLVV 157 (359)
T ss_pred HHHhHHHHHHHHHHhhccCCCcceecccCCccchHHHHhhccceeeeeccchHHHHHHHHHHHHHhccCCCCCeEEEEEe
Confidence 6889999999998887 5655532221 3222222111111 3566889999999999999997 566665555
Q ss_pred ecCCCcEEEEeecCHHHHHHHHhcCcEEEEeCCCCcceeccCCCCCeEEEEEeeecCCCCeEEEEEeeCCC-CCcCCCcc
Q 028044 71 NVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGP-TCHTGSET 149 (214)
Q Consensus 71 d~~tg~VLMlaymN~eAl~~Tl~tg~~~y~SRSR~~lW~KGetSGn~q~v~~i~~DCD~Dall~~V~~~G~-aCHtg~~S 149 (214)
+ ++|.|||++|.|+||+.+||.+|+++||||||++||.|||||||+|++.+|++|||+|||.|.|.|.|| +||+|+.+
T Consensus 158 ~-~~g~~Lglvysskes~a~ti~~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~gfCHl~t~~ 236 (359)
T KOG4311|consen 158 V-DTGAVLGLVYSSKESLATTISSGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGPGFCHLGTET 236 (359)
T ss_pred h-hhhhhhhhhcccHHHHHHHHhcCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCCcccccCcce
Confidence 4 899999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred cccccccccccCCCcCCCchhhHHHHHHHHHHHHHhhcCCCCCCceeeecccCChHHHhhhhhcC
Q 028044 150 CYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAASKNGKPSWTKRLLLDSKLLCSKIRYNN 214 (214)
Q Consensus 150 CF~~~~~~~~~~~~~~~~~~~~~~L~~L~~iI~~Rk~~~peg~~SYTa~L~~~G~kI~kKIGEEA 214 (214)
||+.. ...|..|+.+|.+|+++.|++ |||++||++...++.||.|||
T Consensus 237 Cfg~~----------------~~gL~~LEs~l~~Rk~~aPee--SyTrRLftD~aLL~aKI~EEA 283 (359)
T KOG4311|consen 237 CFGTS----------------VFGLYSLESILSKRKETAPEE--SYTRRLFTDDALLCAKIREEA 283 (359)
T ss_pred eeeee----------------chhhhhHHHHHHHhhhcCCch--hhHHHhhCChHHHHHHHHHHH
Confidence 99863 247999999999999999987 999999999999999999997
No 6
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=100.00 E-value=1.4e-45 Score=274.38 Aligned_cols=75 Identities=47% Similarity=0.914 Sum_probs=66.4
Q ss_pred EEeecCHHHHHHHHhcCcEEEEeCCCCcceeccCCCCCeEEEEEeeecCCCCeEEEEEeeCCCCCcCCCcccccc
Q 028044 79 MQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYT 153 (214)
Q Consensus 79 MlaymN~eAl~~Tl~tg~~~y~SRSR~~lW~KGetSGn~q~v~~i~~DCD~Dall~~V~~~G~aCHtg~~SCF~~ 153 (214)
|+||||+|||++||+||++|||||||++||+|||||||+|+|++|++|||+||||++|+|.||+||||+.|||++
T Consensus 1 Mlaymn~eal~~Tl~tg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~aCHtg~~SCF~r 75 (75)
T PF01502_consen 1 MLAYMNKEALEKTLETGRATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGPACHTGRRSCFYR 75 (75)
T ss_dssp EEEEE-HHHHHHHHHHSB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-SSTTSBSSS--E
T ss_pred CceecCHHHHHHHHHhCcEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCCCccCCCCCCcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985
No 7
>TIGR03188 histidine_hisI phosphoribosyl-ATP pyrophosphohydrolase. This enzyme, phosphoribosyl-ATP pyrophosphohydrolase, catalyses the second step in the histidine biosynthesis pathway. It often occurs as a fusion protein. This model a somewhat narrower scope than Pfam model pfam01503, as some paralogs that appear to be functionally distinct are excluded from this model.
Probab=99.27 E-value=1.2e-12 Score=99.48 Aligned_cols=39 Identities=38% Similarity=0.526 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeeecccCC-hHHHhhhhhcC
Q 028044 174 LYSLESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIRYNN 214 (214)
Q Consensus 174 L~~L~~iI~~Rk~~~peg~~SYTa~L~~~G-~kI~kKIGEEA 214 (214)
|++|+++|.+|+.++|++ |||++||.+| ++|+|||||||
T Consensus 1 l~~L~~~I~~R~~~~~~~--SYT~~L~~~G~~ki~kKvgEEa 40 (84)
T TIGR03188 1 LEELEATIAERKAADPEG--SYTARLFAKGLDKILKKVGEEA 40 (84)
T ss_pred CHHHHHHHHHHHhCCCCC--cHHHHHHhCcHHHHHHHHHHHH
Confidence 478999999999999987 9999999999 99999999996
No 8
>COG0140 HisI Phosphoribosyl-ATP pyrophosphohydrolase [Amino acid transport and metabolism]
Probab=99.23 E-value=2e-12 Score=100.09 Aligned_cols=39 Identities=33% Similarity=0.492 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeeecccCC-hHHHhhhhhcC
Q 028044 174 LYSLESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIRYNN 214 (214)
Q Consensus 174 L~~L~~iI~~Rk~~~peg~~SYTa~L~~~G-~kI~kKIGEEA 214 (214)
|.+|+++|.+|++++|++ |||++||++| ++|+|||||||
T Consensus 1 l~~L~~~i~~Rk~~~pe~--SYTa~L~~~G~~ki~kKvGEEa 40 (92)
T COG0140 1 LSELEAVIADRKNARPEG--SYTAKLLAKGIDKIAKKVGEEA 40 (92)
T ss_pred ChHHHHHHHHHHhcCCCc--hHHHHHHHCcHHHHHHHHhHHH
Confidence 468999999999999987 9999999999 99999999996
No 9
>PRK00400 hisE phosphoribosyl-ATP pyrophosphatase; Validated
Probab=99.18 E-value=7.1e-12 Score=98.80 Aligned_cols=41 Identities=34% Similarity=0.443 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceeeecccCC-hHHHhhhhhcC
Q 028044 172 TTLYSLESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIRYNN 214 (214)
Q Consensus 172 ~~L~~L~~iI~~Rk~~~peg~~SYTa~L~~~G-~kI~kKIGEEA 214 (214)
.+|++|+++|.+|+.++|++ |||++||.+| ++|+|||||||
T Consensus 3 ~~l~~L~~~I~~Rk~~~~~~--SYT~~L~~~G~~ki~kKlgEEa 44 (105)
T PRK00400 3 DTLERLAATIEERKGADPEG--SYTAKLLDKGLDKILKKVGEEA 44 (105)
T ss_pred cHHHHHHHHHHHHHhCCCCC--cHHHHHHHCCHHHHHHHHHHHH
Confidence 47999999999999999876 9999999999 99999999996
No 10
>PF01503 PRA-PH: Phosphoribosyl-ATP pyrophosphohydrolase; InterPro: IPR021130 Phosphoribosyl-ATP pyrophosphatase, 3.6.1.31 from EC catalyses the second step in the histidine biosynthetic pathway: 5-phosphoribosyl-ATP + H2O = 5-phosphoribosyl-AMP + PPi The Neurospora crassa enzyme also catalyzes the reactions of histidinol dehydrogenase (1.1.1.23 from EC) and phosphoribosyl-AMP cyclohydrolase (3.5.4.19 from EC). This entry also includes the Bacillus subtilis Cof proteins, which catalyze the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate []. ; PDB: 2A7W_K 3NL9_A 1YXB_D 1YVW_A 2YFD_C 2YFC_B 2YF3_C 2YF4_A 2YEU_E 2YF9_A ....
Probab=94.88 E-value=0.007 Score=44.88 Aligned_cols=35 Identities=34% Similarity=0.328 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeeecccCChHHHhhhhhcC
Q 028044 174 LYSLESTISQRKAASKNGKPSWTKRLLLDSKLLCSKIRYNN 214 (214)
Q Consensus 174 L~~L~~iI~~Rk~~~peg~~SYTa~L~~~G~kI~kKIGEEA 214 (214)
+.+|.++|.+|+...|.+ | |.+|+.. +++||+||+
T Consensus 1 v~ef~~~~~~~~~~~p~~--~-~~~l~~~---~~~kl~EE~ 35 (83)
T PF01503_consen 1 VEEFHRTIDQRKKEAPEG--S-TKELLDL---RLKKLGEEA 35 (83)
T ss_dssp HHHHHHHHHHCCHSSTTT--H-HHHHHHH---HHHHHHHHH
T ss_pred CHHHHHHHHhHhhCCCCC--C-cHHHHHH---HHHHHHHHH
Confidence 468999999999998875 6 9988876 889999995
No 11
>PF15596 Imm34: Immunity protein 34
Probab=45.98 E-value=31 Score=27.85 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCceeeecccCChHHH
Q 028044 171 MTTLYSLESTISQRKAASKNGKPSWTKRLLLDSKLLC 207 (214)
Q Consensus 171 ~~~L~~L~~iI~~Rk~~~peg~~SYTa~L~~~G~kI~ 207 (214)
...++.|-+++.-|....-. .+||.+|+.+|+.+.
T Consensus 48 ~~~~~~LvnL~r~RiDgalS--E~ytCy~l~kg~~~~ 82 (110)
T PF15596_consen 48 DAALDHLVNLMRYRIDGALS--EEYTCYLLTKGKALS 82 (110)
T ss_pred HHHHHHHHHHHhhhcccccC--cceeeeecccchHHH
Confidence 36899999999999987543 499999999996654
No 12
>cd00495 Ribosomal_L25_TL5_CTC Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC, which each contain two domains. CTC is a known stress protein, and proteins of this family are believed to have two functions, acting as both ribosomal and stress proteins. In Escherichia coli, cells deleted for L25 were found to be viable; however, these cells grew slowly and had impaired protein synthesis capability. In Bacillus subtilis, CTC is induced under stress conditions and located in the ribosome; it has been proposed that CTC may be necessary for accurate translation under stress conditions. Ribosomal_L25_TL5_CTC is found only in bacteria and some plastids. Due to its limited taxonomic diversity and the viability of cells deleted for L25, this protein is not believed to be necessary for ribosomal assembly. Eukaryotes contain a protein called L25, which is not homologous to bacterial L
Probab=44.10 E-value=37 Score=25.36 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=23.5
Q ss_pred CCCeEEEEEEecCCCcEEEEeecCHHHHHHHHhcC
Q 028044 61 NKGLAVAIAQNVDTGAILMQGFANRDALATTISSR 95 (214)
Q Consensus 61 ~~GLiPaIvQd~~tg~VLMlaymN~eAl~~Tl~tg 95 (214)
++|.||+|+-- .|.==..-.++...|.+.+.+.
T Consensus 21 ~~G~iPavvYG--~~~~~~~i~v~~~~l~k~l~~~ 53 (91)
T cd00495 21 RAGKVPAVIYG--KGKEPISISVDEKELEKLLRKE 53 (91)
T ss_pred HCCCCCEEEEC--CCCCCEEEEEcHHHHHHHHhhc
Confidence 57999999944 4322344588999998888653
No 13
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=43.90 E-value=91 Score=23.70 Aligned_cols=57 Identities=19% Similarity=0.097 Sum_probs=44.2
Q ss_pred CCeEEEEEEecCCCcEEEEeecCH-HHHHHHHhcCcEEEEeCCCCccee-ccCCCCCeE
Q 028044 62 KGLAVAIAQNVDTGAILMQGFANR-DALATTISSRKATFYSRSRSTLWT-KGETSQNFI 118 (214)
Q Consensus 62 ~GLiPaIvQd~~tg~VLMlaymN~-eAl~~Tl~tg~~~y~SRSR~~lW~-KGetSGn~q 118 (214)
..++..++.|-.+|++-...|-+. +.+...|+.|++.|+|+=+-+-+. +--+.+|-.
T Consensus 34 g~~~~~~l~De~~~~I~~t~~~~~~~~f~~~l~eG~vy~i~~~~V~~a~~~y~~~~~~y 92 (104)
T cd04474 34 GKLFSFDLLDEDGGEIRATFFNDAVDKFYDLLEVGKVYYISKGSVKVANKKFNTLKNDY 92 (104)
T ss_pred cEEEEEEEEECCCCEEEEEEehHHHHHhhcccccccEEEEeccEEeeccccCCCCCCcE
Confidence 457899999988999999999753 668889999999999998776663 344455533
No 14
>PRK05943 50S ribosomal protein L25; Reviewed
Probab=37.05 E-value=40 Score=25.59 Aligned_cols=32 Identities=9% Similarity=0.000 Sum_probs=23.7
Q ss_pred CCCeEEEEEEecCCCcEEEEeecCHHHHHHHHhc
Q 028044 61 NKGLAVAIAQNVDTGAILMQGFANRDALATTISS 94 (214)
Q Consensus 61 ~~GLiPaIvQd~~tg~VLMlaymN~eAl~~Tl~t 94 (214)
++|.||+|+ |.-|.==+-..+++..|.+.+.+
T Consensus 22 ~~G~vPaVi--YG~~~~~~~i~v~~~el~k~l~~ 53 (94)
T PRK05943 22 RAGKFPAII--YGGNEAPVSIVLDHKDVINLQAK 53 (94)
T ss_pred HCCCCCEEE--ECCCCCcEEEEEcHHHHHHHHhc
Confidence 579999999 54442235568999999988864
No 15
>PF14076 DUF4258: Domain of unknown function (DUF4258)
Probab=34.94 E-value=1.5e+02 Score=20.19 Aligned_cols=34 Identities=9% Similarity=0.181 Sum_probs=26.4
Q ss_pred cCHHHHHHHHhcCcEEE----EeCCCCcceeccCCCCC
Q 028044 83 ANRDALATTISSRKATF----YSRSRSTLWTKGETSQN 116 (214)
Q Consensus 83 mN~eAl~~Tl~tg~~~y----~SRSR~~lW~KGetSGn 116 (214)
.+.+-+..+|.+|+..+ -.+...++|..+...|+
T Consensus 15 Is~~~I~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 52 (73)
T PF14076_consen 15 ISEEDIEDALENGEIIEDYSDDKRGPCRLYIGGGKEGR 52 (73)
T ss_pred CCHHHHHHHHhcCeEeeecCCCCCCCeEEEEEecCCCC
Confidence 57788999999999996 44555677777777776
No 16
>PF09137 Glucodextran_N: Glucodextranase, domain N; InterPro: IPR015220 Glucodextranase domain N, uniquely found in bacterial and archaeal glucoamylases and glucodextranases, adopts a structure consisting of 17 antiparallel beta-strands. These beta-strands are divided into two beta-sheets, and one of the beta-sheets is wrapped by an extended polypeptide, which appears to stabilise the domain. This domain, together with glycoside hydrolase domain A (IPR011613 from INTERPRO), is mainly involved with catalytic activity, hydrolysing alpha-1,6-glucosidic linkages of dextran to release beta-D-glucose from the non-reducing end via an inverting reaction mechanism []. ; PDB: 1UG9_A 1ULV_A 1LF6_B 1LF9_A.
Probab=32.02 E-value=74 Score=29.15 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.9
Q ss_pred CCCCeEEEEEeeecCCCCeEEEEEe
Q 028044 113 TSQNFINVQDIFLDCDRDSIIYLGK 137 (214)
Q Consensus 113 tSGn~q~v~~i~~DCD~Dall~~V~ 137 (214)
..|.++..++|..|-++|+||+.|.
T Consensus 93 ~~gry~i~k~i~tDP~rd~ll~~v~ 117 (269)
T PF09137_consen 93 KQGRYRITKEIFTDPDRDVLLMRVT 117 (269)
T ss_dssp TTSSEEEEEEEEE-TTSSEEEEEEE
T ss_pred CCCCEEEEEEEECCCCCCEEEEEEE
Confidence 4688999999999999999999985
No 17
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=31.67 E-value=53 Score=21.46 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=18.8
Q ss_pred CeEEEEEEecCCCcEEEEeecCHHHHHHHH
Q 028044 63 GLAVAIAQNVDTGAILMQGFANRDALATTI 92 (214)
Q Consensus 63 GLiPaIvQd~~tg~VLMlaymN~eAl~~Tl 92 (214)
+-+|+++.+ |++ +.|| |.++|...|
T Consensus 49 ~~vP~~~~~---~~~-~~g~-~~~~i~~~i 73 (74)
T TIGR02196 49 RGVPVIVIG---HKI-IVGF-DPEKLDQLL 73 (74)
T ss_pred CcccEEEEC---CEE-EeeC-CHHHHHHHh
Confidence 457999965 665 7776 889988765
No 18
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=26.82 E-value=59 Score=29.61 Aligned_cols=60 Identities=13% Similarity=0.268 Sum_probs=44.7
Q ss_pred hcCcEEEEeCCCCcceeccCCCCCeEEEEE-----------eeecCCCCeEEEEEeeC--CCCCcCCCccccc
Q 028044 93 SSRKATFYSRSRSTLWTKGETSQNFINVQD-----------IFLDCDRDSIIYLGKPD--GPTCHTGSETCYY 152 (214)
Q Consensus 93 ~tg~~~y~SRSR~~lW~KGetSGn~q~v~~-----------i~~DCD~Dall~~V~~~--G~aCHtg~~SCF~ 152 (214)
.+-+-|=|+=.++.||+.|+-.|-++..-. +-+|||..+|-|.+.+. |.|-.....-|-|
T Consensus 108 s~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~egtl~F~~~~e~LGvAFRgL~~~~LY 180 (242)
T KOG3953|consen 108 SNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIEGTLSFAADGEYLGVAFRGLKDKKLY 180 (242)
T ss_pred CCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeeccceEEEEECCeEEeeeecCCCCCcce
Confidence 456778889999999999988887777655 67999999999998755 6554333333333
No 19
>PF01386 Ribosomal_L25p: Ribosomal L25p family; InterPro: IPR020055 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry models the short-form of the ribosomal L25 protein. The long-form has homology to the general stress protein Ctc of Bacillus subtilis, a mesophile, and ribosomal protein TL5 of Thermus thermophilus, a thermophile. Ribosomal protein L25 of Escherichia coli and Haemophilus influenzae appear to be orthologous but consist only of the N-terminal half of Ctc and TL5. Both short (L25-like) and full-length (CTC-like) members of this family bind the E-loop of bacterial 5S rRNA.; GO: 0003735 structural constituent of ribosome, 0008097 5S rRNA binding, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2HGQ_Y 2HGJ_Y 2Y19_Z 2WRL_Z 3KIT_Z 2WH2_Z 2WDN_Z 3V25_Z 3HUZ_Z 3KIY_Z ....
Probab=26.79 E-value=92 Score=23.26 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=24.5
Q ss_pred CCCeEEEEEEecCCCcEEEEeecCHHHHHHHHh
Q 028044 61 NKGLAVAIAQNVDTGAILMQGFANRDALATTIS 93 (214)
Q Consensus 61 ~~GLiPaIvQd~~tg~VLMlaymN~eAl~~Tl~ 93 (214)
++|.||+|+ |..|.=-+...++...|.+.+.
T Consensus 19 ~~G~iPavi--YG~~~~~~~i~v~~~~l~k~~~ 49 (88)
T PF01386_consen 19 REGKIPAVI--YGKGKESIPISVDEKELEKLLR 49 (88)
T ss_dssp HTTEEEEEE--EESSEEEEEEEEEHHHHHHHHT
T ss_pred HcCCceEEE--ECCCCCCEEEEEeHHHHHHHHH
Confidence 479999999 5455445777899999999985
No 20
>PRK05618 50S ribosomal protein L25/general stress protein Ctc; Reviewed
Probab=23.95 E-value=86 Score=26.95 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=25.3
Q ss_pred CCCeEEEEEEecCCCcEEEEeecCHHHHHHHHhcC
Q 028044 61 NKGLAVAIAQNVDTGAILMQGFANRDALATTISSR 95 (214)
Q Consensus 61 ~~GLiPaIvQd~~tg~VLMlaymN~eAl~~Tl~tg 95 (214)
++|+||+|+ |..|.==....++...|.+.+.++
T Consensus 24 ~~G~VPaVi--YG~~~~~~~i~v~~~~l~k~l~~~ 56 (197)
T PRK05618 24 RAGKVPAVI--YGKGKEPVSISVDEKELIKALKKG 56 (197)
T ss_pred HCCCCcEEE--ECCCCCCEEEEECHHHHHHHHhcC
Confidence 579999999 555533456689999999999654
No 21
>PRK10795 penicillin-binding protein 2; Provisional
Probab=22.01 E-value=1.2e+02 Score=30.50 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=25.4
Q ss_pred CCcchhhHHHhhhccccCCCCeEEEEEEecCCCcEEEEe
Q 028044 43 NPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQG 81 (214)
Q Consensus 43 ~~~~~~~~~~~~~~l~~d~~GLiPaIvQd~~tg~VLMla 81 (214)
.++.|..++.++...=-++.| -+||.|+.||+||-++
T Consensus 252 ~LTID~~lQ~~ae~~l~~~~g--a~Vvmdp~TGeILAma 288 (634)
T PRK10795 252 YLTLDLKLQQYIETLLAGSRA--AVVVTDPRTGGILALV 288 (634)
T ss_pred EEEECHHHHHHHHHHHhcCce--EEEEEECCCCcEEEEE
Confidence 456777776665432112344 7999999999999876
No 22
>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=21.95 E-value=74 Score=25.70 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=16.5
Q ss_pred CcEEEEeecCHHHHHHHHh
Q 028044 75 GAILMQGFANRDALATTIS 93 (214)
Q Consensus 75 g~VLMlaymN~eAl~~Tl~ 93 (214)
..||.+|||+.|.|-+-|-
T Consensus 90 ~~VlGFGFmD~EeLG~rlv 108 (115)
T TIGR03577 90 KNVLGFGFMDKEELGKRLT 108 (115)
T ss_pred CeEEeeccccHHHHHHHHH
Confidence 4899999999999987664
No 23
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=20.62 E-value=1.4e+02 Score=19.58 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=12.8
Q ss_pred CCCeEEEEEEecCCCcEEE
Q 028044 61 NKGLAVAIAQNVDTGAILM 79 (214)
Q Consensus 61 ~~GLiPaIvQd~~tg~VLM 79 (214)
.+|-.--+..|+.||+||-
T Consensus 44 ~~~~~~~v~VDa~tG~Il~ 62 (64)
T PF03413_consen 44 PDGGEYEVYVDAYTGEILS 62 (64)
T ss_dssp TTTEEEEEEEETTT--EEE
T ss_pred CCCCEEEEEEECCCCeEEE
Confidence 3566666778999999984
Done!